AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0580024441.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0580024441.01.T01 MTR_5g011210 96.958 263 8 0 1 263 1 263 0.0 534
MsG0580024441.01.T01 MTR_4g102450 79.468 263 53 1 1 263 1 262 7.92e-158 439
MsG0580024441.01.T01 MTR_5g079950 52.000 250 113 3 16 259 7 255 4.70e-93 275
MsG0580024441.01.T01 MTR_2g097030 53.680 231 105 2 30 259 27 256 1.18e-91 271
MsG0580024441.01.T01 MTR_5g041700 58.108 222 89 3 37 257 25 243 2.77e-90 268
MsG0580024441.01.T01 MTR_7g061720 50.379 264 123 4 1 263 1 257 1.56e-89 266
MsG0580024441.01.T01 MTR_1g085460 54.348 230 99 4 37 262 30 257 8.26e-88 261
MsG0580024441.01.T01 MTR_3g094060 56.054 223 96 2 37 259 31 251 4.06e-87 259
MsG0580024441.01.T01 MTR_7g111010 55.217 230 97 4 37 262 27 254 8.91e-87 259
MsG0580024441.01.T01 MTR_4g081950 55.405 222 95 3 37 257 61 279 9.46e-87 260
MsG0580024441.01.T01 MTR_4g063975 50.000 250 123 2 11 259 6 254 1.85e-86 258
MsG0580024441.01.T01 MTR_7g110990 55.217 230 97 4 37 262 12 239 1.97e-86 257
MsG0580024441.01.T01 MTR_3g094040 56.109 221 95 2 37 257 31 249 2.27e-86 258
MsG0580024441.01.T01 MTR_3g435430 53.648 233 103 4 27 257 14 243 6.41e-86 256
MsG0580024441.01.T01 MTR_5g075320 51.613 248 116 4 9 256 3 246 3.05e-85 255
MsG0580024441.01.T01 MTR_8g464350 53.275 229 103 3 35 262 29 254 2.37e-84 253
MsG0580024441.01.T01 MTR_8g058990 49.612 258 122 5 7 262 2 253 4.27e-84 252
MsG0580024441.01.T01 MTR_1g026020 50.000 240 115 4 26 262 18 255 1.05e-83 251
MsG0580024441.01.T01 MTR_7g013140 54.825 228 99 3 36 262 27 251 2.61e-83 250
MsG0580024441.01.T01 MTR_7g013150 48.638 257 124 4 7 262 4 253 1.29e-81 246
MsG0580024441.01.T01 MTR_7g013120 52.193 228 104 4 37 262 29 253 4.52e-81 244
MsG0580024441.01.T01 MTR_3g466760 50.584 257 124 3 1 256 1 255 9.24e-81 244
MsG0580024441.01.T01 MTR_7g011060 52.444 225 97 3 35 259 24 238 2.25e-80 242
MsG0580024441.01.T01 MTR_3g466790 51.230 244 117 2 13 256 8 249 2.21e-79 240
MsG0580024441.01.T01 MTR_4g124340 49.333 225 109 4 37 259 61 282 2.44e-78 238
MsG0580024441.01.T01 MTR_6g012520 54.464 224 90 4 37 259 28 240 7.51e-70 215
MsG0580024441.01.T01 MTR_0040s0140 41.935 248 139 3 16 259 8 254 2.45e-68 212
MsG0580024441.01.T01 MTR_5g076950 45.778 225 121 1 35 259 39 262 1.61e-67 210
MsG0580024441.01.T01 MTR_2g090255 39.506 243 145 2 18 259 9 250 4.81e-64 201
MsG0580024441.01.T01 MTR_3g064510 43.777 233 122 5 35 259 51 282 1.30e-60 193
MsG0580024441.01.T01 MTR_0008s0120 36.187 257 104 4 6 262 3 199 2.17e-50 164
MsG0580024441.01.T01 MTR_2g090270 31.818 264 149 11 15 262 10 258 7.13e-31 115
MsG0580024441.01.T01 MTR_0122s0020 33.333 240 132 10 37 263 41 265 1.58e-30 115
MsG0580024441.01.T01 MTR_2g090265 31.343 268 155 11 8 262 5 256 4.40e-30 113
MsG0580024441.01.T01 MTR_4g028640 33.058 242 133 9 35 263 40 265 3.54e-27 106
MsG0580024441.01.T01 MTR_6g012500 48.485 99 50 1 161 259 181 278 4.61e-25 100
MsG0580024441.01.T01 MTR_0118s0070 29.958 237 136 9 42 262 53 275 1.26e-21 91.7
MsG0580024441.01.T01 MTR_0809s0010 28.685 251 145 9 28 262 38 270 7.78e-20 86.7
MsG0580024441.01.T01 MTR_5g013440 25.490 255 157 7 27 263 13 252 4.47e-19 84.3
MsG0580024441.01.T01 MTR_0122s0020 32.584 178 94 8 37 202 41 204 9.40e-19 82.4
MsG0580024441.01.T01 MTR_4g075790 28.634 227 131 6 50 262 34 243 1.68e-15 74.3
MsG0580024441.01.T01 MTR_4g099370 25.652 230 156 5 40 263 31 251 6.93e-14 69.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0580024441.01.T01 AT1G12560 65.399 263 90 1 1 263 1 262 7.62e-127 361
MsG0580024441.01.T01 AT1G62980 65.854 246 81 1 18 263 15 257 2.40e-122 349
MsG0580024441.01.T01 AT2G39700 53.846 247 112 2 11 256 5 250 4.21e-95 280
MsG0580024441.01.T01 AT3G55500 55.947 227 98 2 31 256 28 253 6.33e-93 275
MsG0580024441.01.T01 AT2G37640 51.362 257 122 3 8 263 7 261 1.55e-91 271
MsG0580024441.01.T01 AT2G03090 56.951 223 94 2 37 259 30 250 7.04e-89 264
MsG0580024441.01.T01 AT5G02260 49.609 256 126 3 5 259 1 254 1.76e-88 263
MsG0580024441.01.T01 AT1G69530 52.227 247 116 2 11 257 1 245 1.78e-88 263
MsG0580024441.01.T01 AT1G69530 52.227 247 116 2 11 257 1 245 1.78e-88 263
MsG0580024441.01.T01 AT1G69530 52.227 247 116 2 11 257 1 245 2.64e-88 263
MsG0580024441.01.T01 AT2G28950 53.043 230 106 2 31 259 25 253 2.94e-87 260
MsG0580024441.01.T01 AT1G20190 53.138 239 107 3 27 262 16 252 3.57e-86 257
MsG0580024441.01.T01 AT4G01630 53.478 230 101 4 37 262 28 255 2.99e-85 255
MsG0580024441.01.T01 AT5G56320 50.400 250 116 4 11 259 7 249 1.03e-84 254
MsG0580024441.01.T01 AT5G56320 50.400 250 116 4 11 259 7 249 1.03e-84 254
MsG0580024441.01.T01 AT5G56320 50.400 250 116 4 11 259 7 249 4.49e-84 254
MsG0580024441.01.T01 AT2G40610 54.955 222 95 4 37 256 30 248 1.42e-83 251
MsG0580024441.01.T01 AT2G37640 54.976 211 92 3 54 263 28 236 4.21e-82 246
MsG0580024441.01.T01 AT5G05290 51.351 222 105 3 37 257 32 251 4.61e-80 242
MsG0580024441.01.T01 AT1G69530 50.855 234 110 3 11 244 1 229 2.67e-79 239
MsG0580024441.01.T01 AT5G39280 46.067 267 131 6 1 262 17 275 8.59e-79 239
MsG0580024441.01.T01 AT1G69530 54.286 210 95 1 11 220 1 209 9.37e-79 237
MsG0580024441.01.T01 AT5G39300 45.896 268 131 6 1 262 17 276 1.34e-78 239
MsG0580024441.01.T01 AT1G26770 55.204 221 97 2 37 257 26 244 1.92e-78 238
MsG0580024441.01.T01 AT1G26770 55.204 221 97 2 37 257 36 254 2.29e-78 238
MsG0580024441.01.T01 AT5G39270 49.378 241 111 5 28 262 44 279 2.96e-78 238
MsG0580024441.01.T01 AT5G39290 48.963 241 112 5 28 262 44 279 1.17e-76 234
MsG0580024441.01.T01 AT3G29030 50.901 222 98 4 37 257 38 249 2.15e-74 227
MsG0580024441.01.T01 AT5G39310 47.845 232 110 6 35 262 88 312 1.57e-73 227
MsG0580024441.01.T01 AT3G03220 44.643 224 123 1 36 259 39 261 9.89e-68 211
MsG0580024441.01.T01 AT3G15370 48.246 228 106 6 37 259 27 247 2.63e-66 207
MsG0580024441.01.T01 AT1G20190 51.031 194 90 3 72 262 2 193 1.11e-65 203
MsG0580024441.01.T01 AT3G15370 48.815 211 96 6 54 259 74 277 4.39e-60 192
MsG0580024441.01.T01 AT4G38210 40.948 232 132 4 35 263 26 255 1.98e-59 189
MsG0580024441.01.T01 AT5G39260 39.623 265 137 8 4 262 15 262 1.27e-55 180
MsG0580024441.01.T01 AT4G28250 33.058 242 133 8 35 262 34 260 9.59e-34 123
MsG0580024441.01.T01 AT1G65680 33.865 251 137 9 27 262 37 273 1.08e-32 120
MsG0580024441.01.T01 AT4G28250 32.645 242 128 8 35 262 34 254 1.74e-31 117
MsG0580024441.01.T01 AT2G20750 32.231 242 138 9 35 262 38 267 8.48e-31 115
MsG0580024441.01.T01 AT2G45110 31.343 268 150 8 10 262 11 259 6.40e-28 108
MsG0580024441.01.T01 AT1G65681 33.784 222 122 8 53 262 14 222 2.64e-25 100
MsG0580024441.01.T01 AT3G60570 26.374 273 171 7 2 262 3 257 2.29e-21 90.9
MsG0580024441.01.T01 AT4G28250 31.073 177 90 6 35 199 34 190 4.02e-18 80.9
MsG0580024441.01.T01 AT4G28250 30.556 180 93 6 35 202 34 193 4.44e-18 80.5
MsG0580024441.01.T01 AT2G20750 29.944 177 101 7 35 199 38 203 1.37e-17 79.7
MsG0580024441.01.T01 AT4G17030 23.735 257 179 7 11 260 1 247 6.87e-17 78.2
MsG0580024441.01.T01 AT3G60570 26.818 220 135 6 55 262 4 209 1.22e-16 77.0
MsG0580024441.01.T01 AT3G45970 25.463 216 143 7 56 262 15 221 5.97e-12 64.3
MsG0580024441.01.T01 AT4G38400 26.066 211 139 8 60 262 47 248 2.04e-11 63.2

Find 84 sgRNAs with CRISPR-Local

Find 103 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTGGTCAAGCTCTTTCTTTC+AGG 0.154213 5:-5015066 MsG0580024441.01.T01:CDS
ATCTGATTCCTCCCTTTCTT+TGG 0.263324 5:+5015245 None:intergenic
ACCATGATGTTCACTTTCAT+TGG 0.313673 5:-5016157 MsG0580024441.01.T01:CDS
CCAATCTTTGCCCTCCTAAT+TGG 0.315819 5:-5015488 MsG0580024441.01.T01:CDS
CTTTCCAAGGAAACGGATAC+TGG 0.324679 5:-5015219 MsG0580024441.01.T01:CDS
AGCAGTTTCATCTCCATAAA+AGG 0.326533 5:+5016075 None:intergenic
TTGATTGGTAGCATTTAATC+TGG 0.327109 5:+5015553 None:intergenic
GGATTAAGATGAGCCATAAC+TGG 0.340784 5:-5015120 MsG0580024441.01.T01:CDS
ATTTACCTGCGGTACATAAC+AGG 0.349515 5:+5015360 None:intergenic
TCAGAGGGTTTGGACCAATT+AGG 0.358998 5:+5015474 None:intergenic
TCCACCATTATCAGAGGGTT+TGG 0.384127 5:+5015464 None:intergenic
TGGTCCAAACCCTCTGATAA+TGG 0.386369 5:-5015468 MsG0580024441.01.T01:CDS
ATTCCTCCCTTTCTTTGGCA+TGG 0.398529 5:+5015250 None:intergenic
TTCTATAACATGCACTTGAT+TGG 0.400131 5:+5015538 None:intergenic
AATTTGTTTCAGAATGGTTA+CGG 0.419394 5:-5015639 MsG0580024441.01.T01:CDS
ATGAGCAAGAGACCATTTAC+TGG 0.447346 5:+5016102 None:intergenic
ATTTGTTTCAGAATGGTTAC+GGG 0.448067 5:-5015638 MsG0580024441.01.T01:CDS
GGAATGTTGCTCCTTCCAAT+TGG 0.448353 5:-5015006 MsG0580024441.01.T01:CDS
AGTAAGTCCCACATTCCAAT+TGG 0.449157 5:+5014991 None:intergenic
ATGGTGAAAGGAAGCAGAAC+AGG 0.453444 5:-5015145 MsG0580024441.01.T01:CDS
GGTAGGAAGCACCCCAGTTA+TGG 0.453717 5:+5015107 None:intergenic
TCAACAATGGTTACGCATGC+GGG 0.458134 5:-5015584 MsG0580024441.01.T01:CDS
CCATGCAATAATAGTCTCCT+TGG 0.461696 5:+5015027 None:intergenic
TACGGAAATTTGTTTCAGAA+TGG 0.468116 5:-5015645 MsG0580024441.01.T01:CDS
CGATATTTAGACCCAGTAAA+TGG 0.471376 5:-5016114 MsG0580024441.01.T01:CDS
AGGAAACGGATACTGGCTAT+TGG 0.471532 5:-5015212 MsG0580024441.01.T01:CDS
GTGATGAACGTCGGAGGTGG+AGG 0.471761 5:-5015184 MsG0580024441.01.T01:CDS
ATAGCCAGTATCCGTTTCCT+TGG 0.477292 5:+5015215 None:intergenic
AGATTCTCTTTCCAAGGAAA+CGG 0.479253 5:-5015226 MsG0580024441.01.T01:CDS
AAAATTGCACAGTGGAAAGC+TGG 0.493242 5:-5015390 MsG0580024441.01.T01:CDS
TCAGTGGAAGTTGACCCTAC+TGG 0.496511 5:+5014964 None:intergenic
TAGGGTGCCATGCCAAAGAA+AGG 0.506006 5:-5015257 MsG0580024441.01.T01:CDS
CCAATTAGGAGGGCAAAGAT+TGG 0.512665 5:+5015488 None:intergenic
TGCAATAATAGTCTCCTTGG+TGG 0.513313 5:+5015030 None:intergenic
GCTCCTTCCAATTGGAATGT+GGG 0.514369 5:-5014998 MsG0580024441.01.T01:CDS
TGAAACTGCTTCTGAAACCA+TGG 0.519577 5:-5016062 MsG0580024441.01.T01:CDS
TTCAACAATGGTTACGCATG+CGG 0.524009 5:-5015585 MsG0580024441.01.T01:CDS
ATAGGAGGAGCATGTGGATA+CGG 0.529103 5:-5015663 MsG0580024441.01.T01:intron
GGAATCAGATTCTCTTTCCA+AGG 0.540635 5:-5015232 MsG0580024441.01.T01:CDS
CACCTAGTGTTGCAAATGCT+TGG 0.543954 5:+5015086 None:intergenic
TGGGACTTACTTATTCCAGT+AGG 0.549478 5:-5014979 MsG0580024441.01.T01:CDS
AGCTCAACGTTGTTCAACAA+TGG 0.550424 5:-5015597 MsG0580024441.01.T01:CDS
TAGTGTTGCAAATGCTTGGT+AGG 0.556322 5:+5015090 None:intergenic
GATTAAGATGAGCCATAACT+GGG 0.557111 5:-5015119 MsG0580024441.01.T01:CDS
TATGTGATGAACGTCGGAGG+TGG 0.562607 5:-5015187 MsG0580024441.01.T01:CDS
GAGGGTTTGGACCAATTAGG+AGG 0.565605 5:+5015477 None:intergenic
CACCATCCACCATTATCAGA+GGG 0.568584 5:+5015459 None:intergenic
TCGTCCCTGTTATGTACCGC+AGG 0.572591 5:-5015365 MsG0580024441.01.T01:intron
GGGACTTACTTATTCCAGTA+GGG 0.577822 5:-5014978 MsG0580024441.01.T01:CDS
ATTAGGAGGGCAAAGATTGG+TGG 0.578409 5:+5015491 None:intergenic
TGCTCCTTCCAATTGGAATG+TGG 0.582320 5:-5014999 MsG0580024441.01.T01:CDS
AGGGTGCCATGCCAAAGAAA+GGG 0.587575 5:-5015256 MsG0580024441.01.T01:CDS
TCCAATGAAAGTGAACATCA+TGG 0.593699 5:+5016156 None:intergenic
ATGTCGAGCATGATGGTGAA+AGG 0.595570 5:-5015157 MsG0580024441.01.T01:CDS
GGTGGCAGTGACAGTGGTGA+AGG 0.600550 5:+5015509 None:intergenic
AGCTTGAAGAATAGATGCCA+TGG 0.604341 5:+5016204 None:intergenic
AGTCCCACATTCCAATTGGA+AGG 0.609565 5:+5014995 None:intergenic
ATGTCAAAATGAACTCGTGG+TGG 0.609723 5:+5015432 None:intergenic
GAAACTGCTTCTGAAACCAT+GGG 0.617888 5:-5016061 MsG0580024441.01.T01:intron
CCAAGGAGACTATTATTGCA+TGG 0.618930 5:-5015027 MsG0580024441.01.T01:CDS
TTTACCTGCGGTACATAACA+GGG 0.620314 5:+5015361 None:intergenic
AAGTGCATGTTATAGAAATG+TGG 0.620944 5:-5015532 MsG0580024441.01.T01:CDS
AGGAGATATGTCGAGCATGA+TGG 0.627916 5:-5015164 MsG0580024441.01.T01:CDS
ACACCATCCACCATTATCAG+AGG 0.628985 5:+5015458 None:intergenic
AGGGTTTGGACCAATTAGGA+GGG 0.631610 5:+5015478 None:intergenic
TGTCAAAATGAACTCGTGGT+GGG 0.636575 5:+5015433 None:intergenic
TGAAAGGAAGCAGAACAGGA+TGG 0.636895 5:-5015141 MsG0580024441.01.T01:CDS
TGGAGAACAAACAGTAGCTG+TGG 0.637218 5:-5016137 MsG0580024441.01.T01:CDS
AAGATTGGTGGCAGTGACAG+TGG 0.646965 5:+5015503 None:intergenic
TGAGCAAGAGACCATTTACT+GGG 0.649236 5:+5016103 None:intergenic
CAAGCATTTGCAACACTAGG+TGG 0.653587 5:-5015085 MsG0580024441.01.T01:CDS
TACCAAGCATTTGCAACACT+AGG 0.658315 5:-5015088 MsG0580024441.01.T01:CDS
AGTTTCATCTCCATAAAAGG+TGG 0.665867 5:+5016078 None:intergenic
AACCCTCTGATAATGGTGGA+TGG 0.666609 5:-5015461 MsG0580024441.01.T01:CDS
AAAACTATAGGAGGAGCATG+TGG 0.667607 5:-5015669 MsG0580024441.01.T01:intron
GTGCCATGCCAAAGAAAGGG+AGG 0.673537 5:-5015253 MsG0580024441.01.T01:CDS
TCCAAACCCTCTGATAATGG+TGG 0.691504 5:-5015465 MsG0580024441.01.T01:CDS
TTGGTGTATGTGATGAACGT+CGG 0.694988 5:-5015193 MsG0580024441.01.T01:CDS
GCCATGTCAAAATGAACTCG+TGG 0.697661 5:+5015429 None:intergenic
TGGTTACGGGACAGATACAG+TGG 0.710947 5:-5015625 MsG0580024441.01.T01:CDS
GTGTATGTGATGAACGTCGG+AGG 0.712534 5:-5015190 MsG0580024441.01.T01:CDS
CTTTCATGAAAATTGCACAG+TGG 0.717289 5:-5015398 MsG0580024441.01.T01:CDS
GCTTACTTCATACACCACCA+AGG 0.752925 5:-5015044 MsG0580024441.01.T01:CDS
ATTAAGATGAGCCATAACTG+GGG 0.796701 5:-5015118 MsG0580024441.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTTTTTGTTATGAATAT+GGG - Chr5:5015467-5015486 MsG0580024441.01.T01:CDS 10.0%
!!! TTTTTTTTTTGTTATGAATA+TGG - Chr5:5015466-5015485 MsG0580024441.01.T01:CDS 10.0%
!!! ATGCTGATTATTTTATACTA+AGG + Chr5:5015854-5015873 None:intergenic 20.0%
!!! CAGCATTTTACTTAAAATAA+CGG - Chr5:5015868-5015887 MsG0580024441.01.T01:intron 20.0%
! ACATAATAAACCTTTACAGA+CGG + Chr5:5015256-5015275 None:intergenic 25.0%
!! AATTTGTTTCAGAATGGTTA+CGG - Chr5:5015527-5015546 MsG0580024441.01.T01:CDS 25.0%
!! TGCTTGTTGGTTAATTTATA+GGG - Chr5:5015891-5015910 MsG0580024441.01.T01:intron 25.0%
!! TTTTGACATATCATGATCAT+AGG + Chr5:5015389-5015408 None:intergenic 25.0%
AAGCTGAATTAACGTTGAAA+TGG + Chr5:5015183-5015202 None:intergenic 30.0%
AAGTGCATGTTATAGAAATG+TGG - Chr5:5015634-5015653 MsG0580024441.01.T01:CDS 30.0%
ATTTGTTTCAGAATGGTTAC+GGG - Chr5:5015528-5015547 MsG0580024441.01.T01:CDS 30.0%
CATATAAATGTACATACCCA+TGG + Chr5:5015124-5015143 None:intergenic 30.0%
TTCTATAACATGCACTTGAT+TGG + Chr5:5015631-5015650 None:intergenic 30.0%
! GTGCTTGTTGGTTAATTTAT+AGG - Chr5:5015890-5015909 MsG0580024441.01.T01:intron 30.0%
! TACGGAAATTTGTTTCAGAA+TGG - Chr5:5015521-5015540 MsG0580024441.01.T01:CDS 30.0%
! TTGATTGGTAGCATTTAATC+TGG + Chr5:5015616-5015635 None:intergenic 30.0%
!! TTTTGTTATGAATATGGGTG+TGG - Chr5:5015472-5015491 MsG0580024441.01.T01:CDS 30.0%
ACCATGATGTTCACTTTCAT+TGG - Chr5:5015009-5015028 MsG0580024441.01.T01:CDS 35.0%
AGATTCTCTTTCCAAGGAAA+CGG - Chr5:5015940-5015959 MsG0580024441.01.T01:intron 35.0%
AGCAGTTTCATCTCCATAAA+AGG + Chr5:5015094-5015113 None:intergenic 35.0%
AGTTTCATCTCCATAAAAGG+TGG + Chr5:5015091-5015110 None:intergenic 35.0%
ATGGGTGTGGTTAAAACTAT+AGG - Chr5:5015485-5015504 MsG0580024441.01.T01:CDS 35.0%
ATTAAGATGAGCCATAACTG+GGG - Chr5:5016048-5016067 MsG0580024441.01.T01:intron 35.0%
CGATATTTAGACCCAGTAAA+TGG - Chr5:5015052-5015071 MsG0580024441.01.T01:CDS 35.0%
CTTAAAATAACGGTGCTTGT+TGG - Chr5:5015878-5015897 MsG0580024441.01.T01:intron 35.0%
CTTTCATGAAAATTGCACAG+TGG - Chr5:5015768-5015787 MsG0580024441.01.T01:intron 35.0%
GATTAAGATGAGCCATAACT+GGG - Chr5:5016047-5016066 MsG0580024441.01.T01:intron 35.0%
TCCAATGAAAGTGAACATCA+TGG + Chr5:5015013-5015032 None:intergenic 35.0%
TTAATATGCACCGTCTGTAA+AGG - Chr5:5015243-5015262 MsG0580024441.01.T01:CDS 35.0%
! AATTTTCATGAAAGCAGGCT+TGG + Chr5:5015762-5015781 None:intergenic 35.0%
! TGTGCAATTTTCATGAAAGC+AGG + Chr5:5015767-5015786 None:intergenic 35.0%
AAAATTGCACAGTGGAAAGC+TGG - Chr5:5015776-5015795 MsG0580024441.01.T01:intron 40.0%
AGCTCAACGTTGTTCAACAA+TGG - Chr5:5015569-5015588 MsG0580024441.01.T01:CDS 40.0%
AGTAAGTCCCACATTCCAAT+TGG + Chr5:5016178-5016197 None:intergenic 40.0%
ATCTGATTCCTCCCTTTCTT+TGG + Chr5:5015924-5015943 None:intergenic 40.0%
ATGAGCAAGAGACCATTTAC+TGG + Chr5:5015067-5015086 None:intergenic 40.0%
ATGTCAAAATGAACTCGTGG+TGG + Chr5:5015737-5015756 None:intergenic 40.0%
ATTTACCTGCGGTACATAAC+AGG + Chr5:5015809-5015828 None:intergenic 40.0%
CCAAGGAGACTATTATTGCA+TGG - Chr5:5016139-5016158 MsG0580024441.01.T01:CDS 40.0%
CCATGCAATAATAGTCTCCT+TGG + Chr5:5016142-5016161 None:intergenic 40.0%
GGAATCAGATTCTCTTTCCA+AGG - Chr5:5015934-5015953 MsG0580024441.01.T01:intron 40.0%
GGATTAAGATGAGCCATAAC+TGG - Chr5:5016046-5016065 MsG0580024441.01.T01:intron 40.0%
GGGACTTACTTATTCCAGTA+GGG - Chr5:5016188-5016207 MsG0580024441.01.T01:CDS 40.0%
GGTGTGGTTAAAACTATAGG+AGG - Chr5:5015488-5015507 MsG0580024441.01.T01:CDS 40.0%
TACCAAGCATTTGCAACACT+AGG - Chr5:5016078-5016097 MsG0580024441.01.T01:CDS 40.0%
TAGTGTTGCAAATGCTTGGT+AGG + Chr5:5016079-5016098 None:intergenic 40.0%
TGAGCAAGAGACCATTTACT+GGG + Chr5:5015066-5015085 None:intergenic 40.0%
TGCAATAATAGTCTCCTTGG+TGG + Chr5:5016139-5016158 None:intergenic 40.0%
TGGGACTTACTTATTCCAGT+AGG - Chr5:5016187-5016206 MsG0580024441.01.T01:CDS 40.0%
TGTCAAAATGAACTCGTGGT+GGG + Chr5:5015736-5015755 None:intergenic 40.0%
TTCAACAATGGTTACGCATG+CGG - Chr5:5015581-5015600 MsG0580024441.01.T01:CDS 40.0%
TTGGTGTATGTGATGAACGT+CGG - Chr5:5015973-5015992 MsG0580024441.01.T01:intron 40.0%
TTTACCTGCGGTACATAACA+GGG + Chr5:5015808-5015827 None:intergenic 40.0%
! AAAACTATAGGAGGAGCATG+TGG - Chr5:5015497-5015516 MsG0580024441.01.T01:CDS 40.0%
! GAGCATTGTGAATTTACCTG+CGG + Chr5:5015820-5015839 None:intergenic 40.0%
!! ACCACGAGTTCATTTTGACA+TGG - Chr5:5015736-5015755 MsG0580024441.01.T01:intron 40.0%
!! GAAACTGCTTCTGAAACCAT+GGG - Chr5:5015105-5015124 MsG0580024441.01.T01:CDS 40.0%
!! TGAAACTGCTTCTGAAACCA+TGG - Chr5:5015104-5015123 MsG0580024441.01.T01:CDS 40.0%
ACACCATCCACCATTATCAG+AGG + Chr5:5015711-5015730 None:intergenic 45.0%
AGGAGATATGTCGAGCATGA+TGG - Chr5:5016002-5016021 MsG0580024441.01.T01:intron 45.0%
AGGGTTTGGACCAATTAGGA+GGG + Chr5:5015691-5015710 None:intergenic 45.0%
AGTCCCACATTCCAATTGGA+AGG + Chr5:5016174-5016193 None:intergenic 45.0%
ATAGCCAGTATCCGTTTCCT+TGG + Chr5:5015954-5015973 None:intergenic 45.0%
ATGGTGAAAGGAAGCAGAAC+AGG - Chr5:5016021-5016040 MsG0580024441.01.T01:intron 45.0%
ATTAGGAGGGCAAAGATTGG+TGG + Chr5:5015678-5015697 None:intergenic 45.0%
ATTCCTCCCTTTCTTTGGCA+TGG + Chr5:5015919-5015938 None:intergenic 45.0%
CAAGCATTTGCAACACTAGG+TGG - Chr5:5016081-5016100 MsG0580024441.01.T01:CDS 45.0%
CACCATCCACCATTATCAGA+GGG + Chr5:5015710-5015729 None:intergenic 45.0%
CACCTAGTGTTGCAAATGCT+TGG + Chr5:5016083-5016102 None:intergenic 45.0%
CCAATCTTTGCCCTCCTAAT+TGG - Chr5:5015678-5015697 MsG0580024441.01.T01:intron 45.0%
CCAATTAGGAGGGCAAAGAT+TGG + Chr5:5015681-5015700 None:intergenic 45.0%
CTTTCCAAGGAAACGGATAC+TGG - Chr5:5015947-5015966 MsG0580024441.01.T01:intron 45.0%
GCCATGTCAAAATGAACTCG+TGG + Chr5:5015740-5015759 None:intergenic 45.0%
GCTCCTTCCAATTGGAATGT+GGG - Chr5:5016168-5016187 MsG0580024441.01.T01:CDS 45.0%
GCTTACTTCATACACCACCA+AGG - Chr5:5016122-5016141 MsG0580024441.01.T01:CDS 45.0%
GGAATGTTGCTCCTTCCAAT+TGG - Chr5:5016160-5016179 MsG0580024441.01.T01:CDS 45.0%
GTGGTCAAGCTCTTTCTTTC+AGG - Chr5:5016100-5016119 MsG0580024441.01.T01:CDS 45.0%
TCAACAATGGTTACGCATGC+GGG - Chr5:5015582-5015601 MsG0580024441.01.T01:CDS 45.0%
TCAGAGGGTTTGGACCAATT+AGG + Chr5:5015695-5015714 None:intergenic 45.0%
TCCACCATTATCAGAGGGTT+TGG + Chr5:5015705-5015724 None:intergenic 45.0%
TGAAAGGAAGCAGAACAGGA+TGG - Chr5:5016025-5016044 MsG0580024441.01.T01:intron 45.0%
TGCTCCTTCCAATTGGAATG+TGG - Chr5:5016167-5016186 MsG0580024441.01.T01:CDS 45.0%
TGGAGAACAAACAGTAGCTG+TGG - Chr5:5015029-5015048 MsG0580024441.01.T01:CDS 45.0%
TGGTCCAAACCCTCTGATAA+TGG - Chr5:5015698-5015717 MsG0580024441.01.T01:intron 45.0%
! AGGAAACGGATACTGGCTAT+TGG - Chr5:5015954-5015973 MsG0580024441.01.T01:intron 45.0%
! ATAGGAGGAGCATGTGGATA+CGG - Chr5:5015503-5015522 MsG0580024441.01.T01:CDS 45.0%
! ATGTCGAGCATGATGGTGAA+AGG - Chr5:5016009-5016028 MsG0580024441.01.T01:intron 45.0%
! CTTGCTCATGCCACCTTTTA+TGG - Chr5:5015078-5015097 MsG0580024441.01.T01:CDS 45.0%
!! AACCCTCTGATAATGGTGGA+TGG - Chr5:5015705-5015724 MsG0580024441.01.T01:intron 45.0%
!! TCCAAACCCTCTGATAATGG+TGG - Chr5:5015701-5015720 MsG0580024441.01.T01:intron 45.0%
GAGGGTTTGGACCAATTAGG+AGG + Chr5:5015692-5015711 None:intergenic 50.0%
GTGTATGTGATGAACGTCGG+AGG - Chr5:5015976-5015995 MsG0580024441.01.T01:intron 50.0%
TATGTGATGAACGTCGGAGG+TGG - Chr5:5015979-5015998 MsG0580024441.01.T01:intron 50.0%
TCAGTGGAAGTTGACCCTAC+TGG + Chr5:5016205-5016224 None:intergenic 50.0%
TGGTTACGGGACAGATACAG+TGG - Chr5:5015541-5015560 MsG0580024441.01.T01:CDS 50.0%
! AAGATTGGTGGCAGTGACAG+TGG + Chr5:5015666-5015685 None:intergenic 50.0%
! AGGGTGCCATGCCAAAGAAA+GGG - Chr5:5015910-5015929 MsG0580024441.01.T01:intron 50.0%
! TAGGGTGCCATGCCAAAGAA+AGG - Chr5:5015909-5015928 MsG0580024441.01.T01:intron 50.0%
GTGCCATGCCAAAGAAAGGG+AGG - Chr5:5015913-5015932 MsG0580024441.01.T01:intron 55.0%
TCGTCCCTGTTATGTACCGC+AGG - Chr5:5015801-5015820 MsG0580024441.01.T01:intron 55.0%
!! GGTAGGAAGCACCCCAGTTA+TGG + Chr5:5016062-5016081 None:intergenic 55.0%
GGTGGCAGTGACAGTGGTGA+AGG + Chr5:5015660-5015679 None:intergenic 60.0%
GTGATGAACGTCGGAGGTGG+AGG - Chr5:5015982-5016001 MsG0580024441.01.T01:intron 60.0%
Chromosome Type Strat End Strand Name
Chr5 gene 5014964 5016224 5014964 ID=MsG0580024441.01;Name=MsG0580024441.01
Chr5 mRNA 5014964 5016224 5014964 ID=MsG0580024441.01.T01;Parent=MsG0580024441.01;Name=MsG0580024441.01.T01;_AED=0.43;_eAED=0.43;_QI=0|0|0|1|1|1|3|0|263
Chr5 exon 5016062 5016224 5016062 ID=MsG0580024441.01.T01:exon:19007;Parent=MsG0580024441.01.T01
Chr5 exon 5015366 5015681 5015366 ID=MsG0580024441.01.T01:exon:19006;Parent=MsG0580024441.01.T01
Chr5 exon 5014964 5015276 5014964 ID=MsG0580024441.01.T01:exon:19005;Parent=MsG0580024441.01.T01
Chr5 CDS 5016062 5016224 5016062 ID=MsG0580024441.01.T01:cds;Parent=MsG0580024441.01.T01
Chr5 CDS 5015366 5015681 5015366 ID=MsG0580024441.01.T01:cds;Parent=MsG0580024441.01.T01
Chr5 CDS 5014964 5015276 5014964 ID=MsG0580024441.01.T01:cds;Parent=MsG0580024441.01.T01
Gene Sequence

>MsG0580024441.01.T01

ATGGCATCTATTCTTCAAGCTCGTAGCTTCATGTTGATTGCTTATACCATGATGTTCACTTTCATTGGAGAACAAACAGTAGCTGTGGCGATATTTAGACCCAGTAAATGGTCTCTTGCTCATGCCACCTTTTATGGAGATGAAACTGCTTCTGAAACCATGGGAGGAGCATGTGGATACGGAAATTTGTTTCAGAATGGTTACGGGACAGATACAGTGGCTTTAAGCTCAACGTTGTTCAACAATGGTTACGCATGCGGGACGTGTTTCCAGATTAAATGCTACCAATCAAGTGCATGTTATAGAAATGTGGCCTTCACCACTGTCACTGCCACCAATCTTTGCCCTCCTAATTGGTCCAAACCCTCTGATAATGGTGGATGGTGTAACCCACCACGAGTTCATTTTGACATGGCCAAGCCTGCTTTCATGAAAATTGCACAGTGGAAAGCTGGTATCGTCCCTGTTATGTACCGCAGGGTGCCATGCCAAAGAAAGGGAGGAATCAGATTCTCTTTCCAAGGAAACGGATACTGGCTATTGGTGTATGTGATGAACGTCGGAGGTGGAGGAGATATGTCGAGCATGATGGTGAAAGGAAGCAGAACAGGATGGATTAAGATGAGCCATAACTGGGGTGCTTCCTACCAAGCATTTGCAACACTAGGTGGTCAAGCTCTTTCTTTCAGGCTTACTTCATACACCACCAAGGAGACTATTATTGCATGGAATGTTGCTCCTTCCAATTGGAATGTGGGACTTACTTATTCCAGTAGGGTCAACTTCCACTGA
Protein sequence

>MsG0580024441.01.T01

MASILQARSFMLIAYTMMFTFIGEQTVAVAIFRPSKWSLAHATFYGDETASETMGGACGYGNLFQNGYGTDTVALSSTLFNNGYACGTCFQIKCYQSSACYRNVAFTTVTATNLCPPNWSKPSDNGGWCNPPRVHFDMAKPAFMKIAQWKAGIVPVMYRRVPCQRKGGIRFSFQGNGYWLLVYVMNVGGGGDMSSMMVKGSRTGWIKMSHNWGASYQAFATLGGQALSFRLTSYTTKETIIAWNVAPSNWNVGLTYSSRVNFH*