AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0580024522.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0580024522.01.T01 MTR_5g012770 89.463 484 26 3 1 474 41 509 0.0 877
MsG0580024522.01.T01 MTR_4g100810 79.193 471 92 1 2 466 26 496 0.0 791
MsG0580024522.01.T01 MTR_3g115220 54.430 474 195 6 6 460 22 493 0.0 521
MsG0580024522.01.T01 MTR_5g099010 53.928 471 186 6 8 460 43 500 1.22e-178 513
MsG0580024522.01.T01 MTR_1g031590 41.579 380 204 8 97 459 168 546 7.30e-96 300
MsG0580024522.01.T01 MTR_4g084570 40.355 394 217 9 90 466 162 554 1.45e-91 289
MsG0580024522.01.T01 MTR_5g042200 41.063 414 220 10 73 469 81 487 3.73e-91 286
MsG0580024522.01.T01 MTR_4g082310 40.865 416 220 11 72 469 92 499 1.56e-90 285
MsG0580024522.01.T01 MTR_3g005340 41.623 382 205 8 97 461 166 546 5.60e-89 283
MsG0580024522.01.T01 MTR_4g019210 38.605 430 236 11 52 461 202 623 2.73e-86 278
MsG0580024522.01.T01 MTR_6g016015 41.103 399 220 9 73 458 111 507 9.61e-86 273
MsG0580024522.01.T01 MTR_5g064620 39.433 388 224 6 54 434 84 467 3.06e-85 271
MsG0580024522.01.T01 MTR_4g110030 40.100 399 224 9 73 458 112 508 1.59e-84 270
MsG0580024522.01.T01 MTR_3g099480 39.949 393 222 7 56 438 115 503 4.49e-84 269
MsG0580024522.01.T01 MTR_5g059260 44.186 344 170 7 90 414 169 509 5.23e-84 270
MsG0580024522.01.T01 MTR_5g081690 37.587 431 237 13 54 462 93 513 5.73e-84 268
MsG0580024522.01.T01 MTR_2g059350 40.150 401 221 10 73 458 111 507 8.05e-84 268
MsG0580024522.01.T01 MTR_4g125460 36.952 433 243 9 49 460 56 479 5.95e-83 265
MsG0580024522.01.T01 MTR_3g086570 39.164 383 209 9 97 459 169 547 3.28e-82 265
MsG0580024522.01.T01 MTR_4g125460 36.952 433 243 9 49 460 195 618 1.71e-81 265
MsG0580024522.01.T01 MTR_3g096020 40.054 367 209 5 55 414 163 525 5.84e-81 262
MsG0580024522.01.T01 MTR_2g016470 37.203 379 192 9 97 430 208 585 4.03e-78 255
MsG0580024522.01.T01 MTR_4g132590 34.698 464 243 13 51 459 34 492 3.54e-75 244
MsG0580024522.01.T01 MTR_4g132590 34.698 464 243 13 51 459 133 591 4.11e-74 244
MsG0580024522.01.T01 MTR_5g032100 36.855 407 205 10 97 460 105 502 6.72e-72 236
MsG0580024522.01.T01 MTR_3g100310 36.609 407 218 12 90 459 112 515 6.28e-70 231
MsG0580024522.01.T01 MTR_1g102030 38.592 355 202 6 90 430 100 452 1.13e-67 225
MsG0580024522.01.T01 MTR_3g026650 37.831 378 221 8 90 459 185 556 1.57e-67 226
MsG0580024522.01.T01 MTR_4g023030 35.363 427 254 8 55 465 202 622 1.93e-64 219
MsG0580024522.01.T01 MTR_3g026650 40.196 306 174 4 90 390 185 486 4.62e-58 199
MsG0580024522.01.T01 MTR_3g086570 39.245 265 140 6 97 343 169 430 2.80e-56 193
MsG0580024522.01.T01 MTR_1g101990 41.176 255 145 4 190 440 6 259 4.98e-52 178
MsG0580024522.01.T01 MTR_4g010990 32.278 316 185 8 99 403 7 304 9.07e-46 163
MsG0580024522.01.T01 MTR_4g010990 32.278 316 185 8 99 403 96 393 8.64e-45 162
MsG0580024522.01.T01 MTR_7g017330 35.740 277 153 8 94 350 114 385 1.28e-40 154
MsG0580024522.01.T01 MTR_3g092590 32.491 277 172 6 92 353 104 380 1.69e-38 147
MsG0580024522.01.T01 MTR_3g092590 32.491 277 172 6 92 353 104 380 5.37e-38 147
MsG0580024522.01.T01 MTR_1g007390 33.080 263 161 6 106 353 124 386 1.98e-35 140
MsG0580024522.01.T01 MTR_3g026650 38.356 219 127 3 90 304 185 399 1.09e-32 129
MsG0580024522.01.T01 MTR_7g064210 41.279 172 82 4 199 355 26 193 2.82e-32 127
MsG0580024522.01.T01 MTR_2g038320 29.907 321 177 13 97 406 111 394 8.52e-27 112
MsG0580024522.01.T01 MTR_4g008200 28.571 371 214 14 49 405 5 338 1.68e-26 110
MsG0580024522.01.T01 MTR_4g008200 27.913 369 219 13 49 405 56 389 4.19e-26 110
MsG0580024522.01.T01 MTR_1g101985 53.448 58 27 0 97 154 107 164 4.69e-13 67.8
MsG0580024522.01.T01 MTR_1g095680 43.023 86 38 1 204 278 9 94 4.24e-12 63.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0580024522.01.T01 AT4G16650 72.000 475 124 2 2 470 43 514 0.0 701
MsG0580024522.01.T01 AT4G16650 72.000 475 124 2 2 470 43 514 0.0 701
MsG0580024522.01.T01 AT4G38390 54.329 462 203 3 6 459 44 505 2.21e-179 514
MsG0580024522.01.T01 AT1G20550 52.174 483 212 6 8 474 24 503 3.77e-179 514
MsG0580024522.01.T01 AT1G76270 57.314 417 169 3 51 460 73 487 9.79e-177 508
MsG0580024522.01.T01 AT1G14970 42.416 389 206 9 90 461 21 408 4.87e-98 301
MsG0580024522.01.T01 AT1G14970 42.416 389 206 9 90 461 47 434 9.69e-98 301
MsG0580024522.01.T01 AT1G14970 42.416 389 206 9 90 461 167 554 3.45e-96 301
MsG0580024522.01.T01 AT2G01480 42.159 389 207 9 90 461 166 553 6.45e-96 301
MsG0580024522.01.T01 AT2G01480 45.455 341 170 7 90 414 166 506 9.59e-95 296
MsG0580024522.01.T01 AT2G03280 42.079 404 209 11 73 458 84 480 6.40e-91 285
MsG0580024522.01.T01 AT1G14020 41.250 400 221 8 73 460 87 484 8.99e-90 283
MsG0580024522.01.T01 AT1G35510 37.418 457 249 10 26 462 120 559 1.61e-88 281
MsG0580024522.01.T01 AT5G15740 40.602 399 222 9 73 458 102 498 2.74e-87 276
MsG0580024522.01.T01 AT3G02250 41.353 399 219 9 73 458 102 498 4.29e-87 276
MsG0580024522.01.T01 AT1G38065 39.848 394 214 9 65 441 13 400 4.13e-86 272
MsG0580024522.01.T01 AT1G38065 41.734 369 192 9 90 441 48 410 9.74e-86 271
MsG0580024522.01.T01 AT2G03280 39.437 426 216 10 73 458 84 507 5.52e-85 270
MsG0580024522.01.T01 AT5G64600 41.040 346 196 4 73 414 112 453 9.37e-85 270
MsG0580024522.01.T01 AT1G38131 39.848 394 214 9 65 441 142 529 1.43e-84 272
MsG0580024522.01.T01 AT2G37980 35.973 442 245 12 55 471 199 627 5.55e-84 271
MsG0580024522.01.T01 AT3G26370 37.644 433 227 13 57 460 138 556 1.44e-83 268
MsG0580024522.01.T01 AT1G22460 44.237 321 171 6 97 413 179 495 3.06e-81 262
MsG0580024522.01.T01 AT3G54100 35.321 436 255 12 51 466 190 618 1.32e-79 260
MsG0580024522.01.T01 AT5G35570 37.850 428 232 11 56 460 225 641 1.84e-79 260
MsG0580024522.01.T01 AT1G62330 35.862 435 223 10 50 434 196 624 1.50e-78 258
MsG0580024522.01.T01 AT1G04910 38.360 378 224 6 90 460 100 475 1.33e-76 249
MsG0580024522.01.T01 AT1G11990 38.674 362 205 7 90 434 202 563 7.24e-75 246
MsG0580024522.01.T01 AT4G24530 33.613 476 264 13 31 460 48 517 2.22e-74 243
MsG0580024522.01.T01 AT5G01100 34.236 406 246 9 55 447 190 587 1.89e-73 243
MsG0580024522.01.T01 AT1G29200 37.637 364 183 8 110 430 28 390 2.89e-72 235
MsG0580024522.01.T01 AT1G29200 37.637 364 183 8 110 430 102 464 1.65e-71 235
MsG0580024522.01.T01 AT1G29200 37.637 364 183 8 110 430 102 464 1.65e-71 235
MsG0580024522.01.T01 AT1G29200 37.637 364 183 8 110 430 218 580 1.50e-70 235
MsG0580024522.01.T01 AT5G65470 32.735 446 257 9 55 459 59 502 4.88e-70 231
MsG0580024522.01.T01 AT2G44500 38.961 385 208 11 90 459 189 561 2.15e-69 231
MsG0580024522.01.T01 AT1G11990 35.088 399 205 8 90 434 187 585 2.35e-68 229
MsG0580024522.01.T01 AT5G63390 35.238 420 253 9 55 459 133 548 2.88e-67 225
MsG0580024522.01.T01 AT3G07900 36.259 433 251 11 47 461 149 574 4.30e-65 220
MsG0580024522.01.T01 AT1G52630 30.091 329 197 7 97 413 5 312 1.81e-44 159
MsG0580024522.01.T01 AT1G52630 30.091 329 197 7 97 413 93 400 1.27e-43 159
MsG0580024522.01.T01 AT3G30300 36.496 274 155 8 94 350 116 387 6.12e-41 155
MsG0580024522.01.T01 AT3G30300 36.496 274 155 8 94 350 116 387 6.12e-41 155
MsG0580024522.01.T01 AT3G03810 34.050 279 169 7 90 353 101 379 1.16e-38 149
MsG0580024522.01.T01 AT3G03810 34.050 279 169 7 90 353 101 379 1.16e-38 149
MsG0580024522.01.T01 AT3G26370 34.583 240 130 7 57 279 138 367 1.76e-35 136
MsG0580024522.01.T01 AT2G44500 36.986 219 131 3 90 304 189 404 2.67e-33 130
MsG0580024522.01.T01 AT3G21190 28.483 323 182 12 95 405 107 392 4.69e-25 107
MsG0580024522.01.T01 AT1G51630 28.173 323 183 12 95 405 108 393 1.25e-23 103

Find 98 sgRNAs with CRISPR-Local

Find 311 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTGGCATGCCTTAACCTTTC+TGG 0.108482 5:-5991034 None:intergenic
GGTTTAATTTCGCTTCTTAC+TGG 0.232835 5:+5986681 MsG0580024522.01.T01:CDS
TGTTTATAATAGGAGATATA+TGG 0.246061 5:+5990927 MsG0580024522.01.T01:intron
ATTGATCTCATCACCTTATC+AGG 0.260179 5:-5988184 None:intergenic
CTTGGGACACGCATTGTATA+TGG 0.264993 5:-5988217 None:intergenic
CCTGAAAAGGCTAGCATATC+TGG 0.273488 5:-5988936 None:intergenic
CCTCGCTTCCGTTCTCCATC+TGG 0.279056 5:-5989586 None:intergenic
AGTTGGATCATCATTCTTAT+TGG 0.287747 5:+5987984 MsG0580024522.01.T01:CDS
CATGACGATCTCGTGGTCTT+TGG 0.289859 5:+5986632 None:intergenic
ATCTCCTTTGTATAGATGTT+AGG 0.318976 5:-5989745 None:intergenic
GTGCTAAGCTTCTTTGCATT+TGG 0.323021 5:-5990970 None:intergenic
AACTTGATCAAGATAATAAT+CGG 0.343642 5:-5988251 None:intergenic
ATCTCGTGGTCTTTGGTTTG+TGG 0.362348 5:+5986639 MsG0580024522.01.T01:CDS
GCTCTCCCATGAATCCTCTT+TGG 0.363004 5:-5991053 None:intergenic
GTTGCATCGGGAGAAATATA+TGG 0.373675 5:+5989685 MsG0580024522.01.T01:CDS
GTTTGACCAAGTTCTTGAAT+AGG 0.379703 5:-5988565 None:intergenic
ACCGTGCACCAATTGATATA+TGG 0.382336 5:+5986885 MsG0580024522.01.T01:CDS
AGCTTGGTGAAATCAGAAAA+AGG 0.386962 5:+5988994 MsG0580024522.01.T01:CDS
ACCTGTCGTCTCAAAAGAAT+TGG 0.388497 5:-5988277 None:intergenic
TTGGGACACGCATTGTATAT+GGG 0.397785 5:-5988216 None:intergenic
TTAGATTTCCATATATCAAT+TGG 0.403180 5:-5986893 None:intergenic
GGCATGCCAAAGAGGATTCA+TGG 0.413310 5:+5991047 MsG0580024522.01.T01:CDS
CCTTCGACCAGCTAGAATCT+TGG 0.414719 5:-5989884 None:intergenic
TAATCGGGTTCTGATTTCCT+TGG 0.421676 5:-5988235 None:intergenic
GTTTATAATAGGAGATATAT+GGG 0.423059 5:+5990928 MsG0580024522.01.T01:intron
AAATTGTCTAAATATTACTA+TGG 0.426138 5:+5986914 MsG0580024522.01.T01:CDS
GGATTGAATCAACAAAGAAC+TGG 0.427628 5:+5987692 MsG0580024522.01.T01:CDS
CGTCCAGGTCTCATCTCATC+TGG 0.430826 5:-5991075 None:intergenic
TTGTTGATTCAATCCTCCAC+TGG 0.432521 5:-5987684 None:intergenic
AATCGGGTTCTGATTTCCTT+GGG 0.434363 5:-5988234 None:intergenic
CCCACTTCATGAGGAGTAAG+AGG 0.434476 5:-5989616 None:intergenic
TCTCCTTTGTATAGATGTTA+GGG 0.441328 5:-5989744 None:intergenic
GTTTCATAGCAGTCCATTTG+AGG 0.448307 5:+5988620 MsG0580024522.01.T01:CDS
ACATGCTTTCTGATCTTGAA+TGG 0.450545 5:+5986706 MsG0580024522.01.T01:CDS
TACCTTCGCCAGAAAGGTTA+AGG 0.454344 5:+5991026 MsG0580024522.01.T01:CDS
TACGTGCATAATCGCGGCCT+CGG 0.477640 5:-5986946 None:intergenic
ACCAAAATAACAACCTGAAA+AGG 0.486933 5:-5988949 None:intergenic
GAGAAAGAAAGAAATGAGCT+TGG 0.488177 5:+5988978 MsG0580024522.01.T01:CDS
TCTCTCACAAACACAAGAGC+TGG 0.490882 5:-5991118 None:intergenic
TGCCTTAACCTTTCTGGCGA+AGG 0.491638 5:-5991028 None:intergenic
ACAAAACCTATTCAAGAACT+TGG 0.495920 5:+5988559 MsG0580024522.01.T01:CDS
GTAGTCTACAGCGGCTAGGC+GGG 0.497730 5:-5989809 None:intergenic
GCGGCTAGGCGGGATGAGAA+TGG 0.503816 5:-5989799 None:intergenic
TGTCAAAAGAGTTCCTGATA+AGG 0.507750 5:+5988171 MsG0580024522.01.T01:CDS
GGTTTGATGTTACGCGCACT+TGG 0.513582 5:+5989637 MsG0580024522.01.T01:CDS
CACATACCTCTATGTTGCAT+CGG 0.516486 5:+5989672 MsG0580024522.01.T01:CDS
TGAATGGTATTCTCATCGAT+TGG 0.519424 5:+5986722 MsG0580024522.01.T01:CDS
CGGGATGAGAATGGAAGAAA+AGG 0.524026 5:-5989790 None:intergenic
CGGGAAGGCATCAGATGGAC+TGG 0.526918 5:+5991001 MsG0580024522.01.T01:CDS
TGGGACACGCATTGTATATG+GGG 0.528406 5:-5988215 None:intergenic
ACATACCTCTATGTTGCATC+GGG 0.530349 5:+5989673 MsG0580024522.01.T01:CDS
GGATCATCATTCTTATTGGA+AGG 0.535696 5:+5987988 MsG0580024522.01.T01:CDS
ACTTGATCAAGATAATAATC+GGG 0.536000 5:-5988250 None:intergenic
TCAAATGGACTGCTATGAAA+CGG 0.539398 5:-5988618 None:intergenic
TCCTCTTACTCCTCATGAAG+TGG 0.539526 5:+5989615 MsG0580024522.01.T01:CDS
CCTCTTACTCCTCATGAAGT+GGG 0.541378 5:+5989616 MsG0580024522.01.T01:CDS
TTGCTTATTGCAGCCAGTGG+AGG 0.542071 5:+5987671 MsG0580024522.01.T01:CDS
GAGCCAGATGAGATGAGACC+TGG 0.545176 5:+5991072 MsG0580024522.01.T01:CDS
TGATAAGGTGATGAGATCAA+TGG 0.547039 5:+5988186 MsG0580024522.01.T01:CDS
CTGGCATACCTTCGCCAGAA+AGG 0.547774 5:+5991020 MsG0580024522.01.T01:CDS
AAATAGGATTTGAGTCCAGA+TGG 0.553327 5:+5989571 MsG0580024522.01.T01:intron
CTCTCACAAACACAAGAGCT+GGG 0.560650 5:-5991117 None:intergenic
AACATGGCCAAGATTCTAGC+TGG 0.561681 5:+5989877 MsG0580024522.01.T01:CDS
GCATGCCAAAGAGGATTCAT+GGG 0.563632 5:+5991048 MsG0580024522.01.T01:CDS
TGTTACGAGAATGCAGAAGA+TGG 0.570027 5:+5988591 MsG0580024522.01.T01:CDS
TCCATATATCAATTGGTGCA+CGG 0.574106 5:-5986886 None:intergenic
TACTTGCTTATTGCAGCCAG+TGG 0.574430 5:+5987668 MsG0580024522.01.T01:CDS
TCGTGATGGTCATCTCGTCC+AGG 0.574549 5:-5991090 None:intergenic
ATTCTTATTGGAAGGATGAG+AGG 0.587254 5:+5987996 MsG0580024522.01.T01:CDS
ACGAATTCTTAATGCTACGC+TGG 0.588010 5:+5987952 MsG0580024522.01.T01:CDS
ATTTGAGTCCAGATGGAGAA+CGG 0.597126 5:+5989578 MsG0580024522.01.T01:CDS
TTTCCCTAACATCTATACAA+AGG 0.599447 5:+5989741 MsG0580024522.01.T01:CDS
TACTAACAACAATGGCAACA+TGG 0.600721 5:+5989861 MsG0580024522.01.T01:CDS
CCAAGATTCTAGCTGGTCGA+AGG 0.607748 5:+5989884 MsG0580024522.01.T01:CDS
CAGATGGAGAACGGAAGCGA+GGG 0.610738 5:+5989587 MsG0580024522.01.T01:CDS
CCAGATGGAGAACGGAAGCG+AGG 0.610998 5:+5989586 MsG0580024522.01.T01:CDS
AACATCAAACCCACTTCATG+AGG 0.611141 5:-5989625 None:intergenic
TACGCTGGTTGTACCTGAGT+TGG 0.611847 5:+5987967 MsG0580024522.01.T01:CDS
TTTCTCCCGATGCAACATAG+AGG 0.613162 5:-5989678 None:intergenic
CAATGTAGTCTACAGCGGCT+AGG 0.614499 5:-5989813 None:intergenic
GGGACACGCATTGTATATGG+GGG 0.616024 5:-5988214 None:intergenic
CATATACAATGCGTGTCCCA+AGG 0.618244 5:+5988218 MsG0580024522.01.T01:CDS
GTATTTGTTACTAACAACAA+TGG 0.620898 5:+5989853 MsG0580024522.01.T01:CDS
TGTAGTCTACAGCGGCTAGG+CGG 0.622536 5:-5989810 None:intergenic
TAAGAATGATGATCCAACTC+AGG 0.623565 5:-5987980 None:intergenic
GAAACTTACGTGCATAATCG+CGG 0.624468 5:-5986952 None:intergenic
ATCGGGAGAAATATATGGAG+GGG 0.625932 5:+5989690 MsG0580024522.01.T01:CDS
AAGGTTAAGGCATGCCAAAG+AGG 0.627153 5:+5991039 MsG0580024522.01.T01:CDS
GCATCGGGAGAAATATATGG+AGG 0.640908 5:+5989688 MsG0580024522.01.T01:CDS
GATTGAATCAACAAAGAACT+GGG 0.642422 5:+5987693 MsG0580024522.01.T01:CDS
CATCGGGAGAAATATATGGA+GGG 0.644373 5:+5989689 MsG0580024522.01.T01:CDS
GTGCGTGAGCAGATGTCGAA+TGG 0.645428 5:+5987644 MsG0580024522.01.T01:intron
TTAGGGAAAAGATCTTTGAG+AGG 0.654145 5:-5989727 None:intergenic
TACTATGGATGTAGTGACCG+AGG 0.661648 5:+5986929 MsG0580024522.01.T01:CDS
AAGAGCTGGGAAATTCGTGA+TGG 0.664397 5:-5991104 None:intergenic
AGAACAACATGACGATCTCG+TGG 0.676268 5:+5986625 None:intergenic
TCAAAGCATGAAAATTAACA+CGG 0.699065 5:-5988531 None:intergenic
ACAAACAATGTAGTCTACAG+CGG 0.728868 5:-5989818 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATTTAATTATAATCATTGT+TGG + Chr5:5986997-5987016 MsG0580024522.01.T01:intron 10.0%
!! ATAAAAATAGAAGATTAATA+AGG - Chr5:5986796-5986815 None:intergenic 10.0%
!!! TTTTGATTTATATTAGAAAT+AGG + Chr5:5990091-5990110 MsG0580024522.01.T01:intron 10.0%
!! AAAATTTAAAAAATAACACG+TGG + Chr5:5989290-5989309 MsG0580024522.01.T01:intron 15.0%
!! AAATTGTCTAAATATTACTA+TGG + Chr5:5986914-5986933 MsG0580024522.01.T01:CDS 15.0%
!! ATTCAATGCTAATTATAAAT+TGG + Chr5:5986835-5986854 MsG0580024522.01.T01:intron 15.0%
!! ATTGTTAATTGCAATTAAAA+AGG - Chr5:5988886-5988905 None:intergenic 15.0%
!! TATTTGTTTACTTATACTTT+GGG + Chr5:5988731-5988750 MsG0580024522.01.T01:intron 15.0%
!!! ATTGGTTATTTTGATTTTTT+AGG + Chr5:5986853-5986872 MsG0580024522.01.T01:intron 15.0%
!!! GCTTGAAATTTTTATTTTAA+TGG + Chr5:5988310-5988329 MsG0580024522.01.T01:intron 15.0%
!!! TATTTTTCTATTAATCAGTA+GGG - Chr5:5987795-5987814 None:intergenic 15.0%
!!! TTATTTTGATTTTTTAGGAT+GGG + Chr5:5986858-5986877 MsG0580024522.01.T01:intron 15.0%
!!! TTATTTTTCTATTAATCAGT+AGG - Chr5:5987796-5987815 None:intergenic 15.0%
!!! TTCGTAATCAAATTTAAAAT+TGG + Chr5:5986972-5986991 MsG0580024522.01.T01:intron 15.0%
!!! TTTTAAATTTTTTTGGACTT+GGG - Chr5:5989281-5989300 None:intergenic 15.0%
!!! TTTTGTAGTTTTTTTTCTTA+GGG + Chr5:5989403-5989422 MsG0580024522.01.T01:intron 15.0%
!!! TTTTTAAATTTTTTTGGACT+TGG - Chr5:5989282-5989301 None:intergenic 15.0%
!! AAATAAAAATTTCAAGCAAG+TGG - Chr5:5988307-5988326 None:intergenic 20.0%
!! AACTTGATCAAGATAATAAT+CGG - Chr5:5988254-5988273 None:intergenic 20.0%
!! AATGACAAAGTTGAAAAAAA+TGG - Chr5:5990599-5990618 None:intergenic 20.0%
!! AATGTTAGAAATAAGAGTTT+GGG + Chr5:5988847-5988866 MsG0580024522.01.T01:intron 20.0%
!! ACAAATCTTGTATGATATAA+AGG + Chr5:5990451-5990470 MsG0580024522.01.T01:intron 20.0%
!! CATATAAGAATCAAGTTTAA+TGG + Chr5:5988044-5988063 MsG0580024522.01.T01:intron 20.0%
!! CATTAAACTTGATTCTTATA+TGG - Chr5:5988046-5988065 None:intergenic 20.0%
!! GAACAAATCAAAATACAAAA+TGG - Chr5:5987531-5987550 None:intergenic 20.0%
!! GATTTATATTAGAAATAGGT+GGG + Chr5:5990095-5990114 MsG0580024522.01.T01:intron 20.0%
!! GTATTTGTTTACTTATACTT+TGG + Chr5:5988730-5988749 MsG0580024522.01.T01:intron 20.0%
!! GTTGAAAAAAATGGTAAATA+AGG - Chr5:5990590-5990609 None:intergenic 20.0%
!! GTTTATAATAGGAGATATAT+GGG + Chr5:5990928-5990947 MsG0580024522.01.T01:intron 20.0%
!! TAACAAATGATCTTAAGAAT+GGG + Chr5:5987553-5987572 MsG0580024522.01.T01:intron 20.0%
!! TACAATAATGTGATAGAAAT+AGG - Chr5:5987337-5987356 None:intergenic 20.0%
!! TATCCTCAATTATTAACTAT+TGG - Chr5:5990558-5990577 None:intergenic 20.0%
!! TGATTTATATTAGAAATAGG+TGG + Chr5:5990094-5990113 MsG0580024522.01.T01:intron 20.0%
!! TGTTTATAATAGGAGATATA+TGG + Chr5:5990927-5990946 MsG0580024522.01.T01:intron 20.0%
!! TTAACAAATGATCTTAAGAA+TGG + Chr5:5987552-5987571 MsG0580024522.01.T01:intron 20.0%
!! TTAGATTTCCATATATCAAT+TGG - Chr5:5986896-5986915 None:intergenic 20.0%
!! TTATGTAATAAACGAACAAA+AGG - Chr5:5989938-5989957 None:intergenic 20.0%
!! TTCAATTTCAAAACATTGTA+AGG - Chr5:5988667-5988686 None:intergenic 20.0%
!! TTGTTCGTTTATTACATAAA+TGG + Chr5:5989939-5989958 MsG0580024522.01.T01:intron 20.0%
!! TTTAGATTACAACGTTAATT+AGG - Chr5:5990519-5990538 None:intergenic 20.0%
!! TTTCCAATAGTTAATAATTG+AGG + Chr5:5990552-5990571 MsG0580024522.01.T01:intron 20.0%
!!! ATGAAATGAGAATTTTGTTT+AGG + Chr5:5987749-5987768 MsG0580024522.01.T01:intron 20.0%
!!! ATTTTTCTATTAATCAGTAG+GGG - Chr5:5987794-5987813 None:intergenic 20.0%
!!! GTTATTTTGATTTTTTAGGA+TGG + Chr5:5986857-5986876 MsG0580024522.01.T01:intron 20.0%
!!! GTTTTGTAGTTTTTTTTCTT+AGG + Chr5:5989402-5989421 MsG0580024522.01.T01:intron 20.0%
!!! TAACAAGTTATACTTTTCAT+AGG - Chr5:5990675-5990694 None:intergenic 20.0%
!!! TGCATAGCAAAATAATTTTT+AGG - Chr5:5989478-5989497 None:intergenic 20.0%
!!! TTGACTGTATTTTTAGTTTT+TGG + Chr5:5987030-5987049 MsG0580024522.01.T01:intron 20.0%
!!! TTGTAGTTTTTTTCTTCTTA+GGG - Chr5:5989214-5989233 None:intergenic 20.0%
!!! TTTAAATTTTTTTGGACTTG+GGG - Chr5:5989280-5989299 None:intergenic 20.0%
!!! TTTGTAGTTTTTTTCTTCTT+AGG - Chr5:5989215-5989234 None:intergenic 20.0%
!!! TTTGTAGTTTTTTTTCTTAG+GGG + Chr5:5989404-5989423 MsG0580024522.01.T01:intron 20.0%
! AACTCTACAGTTTGAATATT+AGG - Chr5:5990487-5990506 None:intergenic 25.0%
! AATAAAATTGGACATGTTTG+TGG + Chr5:5990394-5990413 MsG0580024522.01.T01:intron 25.0%
! ACTTGATCAAGATAATAATC+GGG - Chr5:5988253-5988272 None:intergenic 25.0%
! AGTATGTATATCATAGATTC+AGG + Chr5:5990775-5990794 MsG0580024522.01.T01:intron 25.0%
! ATAGTGATGATTATTCTGTT+AGG + Chr5:5990039-5990058 MsG0580024522.01.T01:intron 25.0%
! ATGCATTCTAAGTAAAAATC+AGG + Chr5:5989169-5989188 MsG0580024522.01.T01:intron 25.0%
! ATTGTATCATTAGAAGTCAA+TGG - Chr5:5989048-5989067 None:intergenic 25.0%
! CAATGTTAGAAATAAGAGTT+TGG + Chr5:5988846-5988865 MsG0580024522.01.T01:intron 25.0%
! CATATTGAATGTTTCATTTG+TGG + Chr5:5987466-5987485 MsG0580024522.01.T01:intron 25.0%
! GTAAGAATACAAAACTACTA+TGG + Chr5:5989906-5989925 MsG0580024522.01.T01:intron 25.0%
! TAAAGCTTGTATATGGAATT+TGG + Chr5:5990708-5990727 MsG0580024522.01.T01:intron 25.0%
! TCAAAGCATGAAAATTAACA+CGG - Chr5:5988534-5988553 None:intergenic 25.0%
!! ACAAAGTTTTCTGTTTATGT+AGG + Chr5:5987234-5987253 MsG0580024522.01.T01:intron 25.0%
!! CAAAGTTTTCTGTTTATGTA+GGG + Chr5:5987235-5987254 MsG0580024522.01.T01:intron 25.0%
!! CACTTCTCTTTGTTTATAAT+AGG + Chr5:5990917-5990936 MsG0580024522.01.T01:intron 25.0%
!! CTTCTTTCTTCTTTTCATAT+CGG + Chr5:5987607-5987626 MsG0580024522.01.T01:intron 25.0%
!! GCTTTTTAACCAAAAATCAA+AGG - Chr5:5990886-5990905 None:intergenic 25.0%
!! GTATTTGTTACTAACAACAA+TGG + Chr5:5989853-5989872 MsG0580024522.01.T01:CDS 25.0%
!! TCAAATCCTATTTTATCACA+AGG - Chr5:5989564-5989583 None:intergenic 25.0%
!! TCAATATTTTCGATGTTGAT+TGG + Chr5:5988116-5988135 MsG0580024522.01.T01:CDS 25.0%
!! TTTCATAGGAATTTTTGCTT+TGG - Chr5:5990661-5990680 None:intergenic 25.0%
!! TTTTACTTAGAATGCATATC+AGG - Chr5:5989166-5989185 None:intergenic 25.0%
!!! AAAAGTATAACTTGTTACAG+GGG + Chr5:5990678-5990697 MsG0580024522.01.T01:intron 25.0%
!!! AAAGAGAAGTGTTTAAAAGA+AGG - Chr5:5990908-5990927 None:intergenic 25.0%
!!! CAAACTCTTATTTCTAACAT+TGG - Chr5:5988848-5988867 None:intergenic 25.0%
!!! GAAAAGTATAACTTGTTACA+GGG + Chr5:5990677-5990696 MsG0580024522.01.T01:intron 25.0%
!!! TCCAATTTTATTTCTGAACA+GGG - Chr5:5990386-5990405 None:intergenic 25.0%
!!! TGAAAAGTATAACTTGTTAC+AGG + Chr5:5990676-5990695 MsG0580024522.01.T01:intron 25.0%
!!! TGTAGTTTTTTTCTTCTTAG+GGG - Chr5:5989213-5989232 None:intergenic 25.0%
!!! TTAAATTTTTTTGGACTTGG+GGG - Chr5:5989279-5989298 None:intergenic 25.0%
!!! TTGTAGTTTTTTTTCTTAGG+GGG + Chr5:5989405-5989424 MsG0580024522.01.T01:intron 25.0%
AAACTACTGTATCAGTGAAA+AGG + Chr5:5987433-5987452 MsG0580024522.01.T01:intron 30.0%
AACCAAAAATCAAAGGTTGA+GGG - Chr5:5990879-5990898 None:intergenic 30.0%
AACCAGAAAACTATAATTGC+AGG + Chr5:5987292-5987311 MsG0580024522.01.T01:intron 30.0%
AACTACTGTATCAGTGAAAA+GGG + Chr5:5987434-5987453 MsG0580024522.01.T01:intron 30.0%
AAGAAGAAAGAAGTGAGAAA+TGG - Chr5:5987600-5987619 None:intergenic 30.0%
ACAAAACCTATTCAAGAACT+TGG + Chr5:5988559-5988578 MsG0580024522.01.T01:CDS 30.0%
ACCAAAATAACAACCTGAAA+AGG - Chr5:5988952-5988971 None:intergenic 30.0%
ACCAGAAAACTATAATTGCA+GGG + Chr5:5987293-5987312 MsG0580024522.01.T01:intron 30.0%
ACCCTGTTCAGAAATAAAAT+TGG + Chr5:5990382-5990401 MsG0580024522.01.T01:intron 30.0%
AGTTGGATCATCATTCTTAT+TGG + Chr5:5987984-5988003 MsG0580024522.01.T01:CDS 30.0%
ATCTCCTTTGTATAGATGTT+AGG - Chr5:5989748-5989767 None:intergenic 30.0%
CAGAAAAGAAAAACCTCAAA+TGG - Chr5:5988636-5988655 None:intergenic 30.0%
CATTTAAACGCAATCAACAA+AGG + Chr5:5989982-5990001 MsG0580024522.01.T01:intron 30.0%
CTTGATGAAACATAAGAACT+TGG + Chr5:5988358-5988377 MsG0580024522.01.T01:intron 30.0%
CTTGTATATGGAATTTGGTT+TGG + Chr5:5990713-5990732 MsG0580024522.01.T01:intron 30.0%
GATGAAGAATCATAATTGTC+CGG - Chr5:5987906-5987925 None:intergenic 30.0%
GATTGAATCAACAAAGAACT+GGG + Chr5:5987693-5987712 MsG0580024522.01.T01:CDS 30.0%
GTTTCATCAAGACAGTTATT+TGG - Chr5:5988349-5988368 None:intergenic 30.0%
GTTTCTGTAAAGCTTGTATA+TGG + Chr5:5990701-5990720 MsG0580024522.01.T01:intron 30.0%
TAACATTAAGGAGATGTTTC+AGG + Chr5:5988438-5988457 MsG0580024522.01.T01:intron 30.0%
TAACCAAAAATCAAAGGTTG+AGG - Chr5:5990880-5990899 None:intergenic 30.0%
TATGTTTCAAGAAACAGTGT+AGG - Chr5:5989142-5989161 None:intergenic 30.0%
TCTCCTTTGTATAGATGTTA+GGG - Chr5:5989747-5989766 None:intergenic 30.0%
TGATTGAGCAACTAACATTA+AGG + Chr5:5988426-5988445 MsG0580024522.01.T01:intron 30.0%
TGCTACAGTTGCAAAATTTA+GGG - Chr5:5989248-5989267 None:intergenic 30.0%
TGTAATAAACGAACAAAAGG+AGG - Chr5:5989935-5989954 None:intergenic 30.0%
TTGTTGCCTTGTGATAAAAT+AGG + Chr5:5989555-5989574 MsG0580024522.01.T01:intron 30.0%
TTTATGTTCTGTTTATTCGC+TGG + Chr5:5990162-5990181 MsG0580024522.01.T01:intron 30.0%
TTTCCCTAACATCTATACAA+AGG + Chr5:5989741-5989760 MsG0580024522.01.T01:CDS 30.0%
! ACATACTTTTGCATCAAGTT+TGG - Chr5:5990762-5990781 None:intergenic 30.0%
! ACCAATCTAGAGTAAAAAGT+AGG - Chr5:5986753-5986772 None:intergenic 30.0%
! CCAATCTAGAGTAAAAAGTA+GGG - Chr5:5986752-5986771 None:intergenic 30.0%
! GAAACATAAGAACTTGGTTT+TGG + Chr5:5988364-5988383 MsG0580024522.01.T01:intron 30.0%
! TTACTTATACTTTGGGTTTG+TGG + Chr5:5988738-5988757 MsG0580024522.01.T01:intron 30.0%
!! AAAGTATAACTTGTTACAGG+GGG + Chr5:5990679-5990698 MsG0580024522.01.T01:intron 30.0%
!! AGTTGTTTTCTGTGAATATG+AGG + Chr5:5987857-5987876 MsG0580024522.01.T01:intron 30.0%
!! ATGAGACTTTTGATTATGAC+CGG + Chr5:5987884-5987903 MsG0580024522.01.T01:intron 30.0%
!! TGGTTTGATGCTTTTTGTTT+TGG + Chr5:5986659-5986678 MsG0580024522.01.T01:CDS 30.0%
!! TTTATGAAGTGAAGGTACTA+TGG - Chr5:5990353-5990372 None:intergenic 30.0%
!!! ACAGTAGTTTTGTCTTTCAA+GGG - Chr5:5987423-5987442 None:intergenic 30.0%
!!! GAGTTGATTTGATTTTTCGT+TGG + Chr5:5990635-5990654 MsG0580024522.01.T01:intron 30.0%
!!! GGTTTGATGCTTTTTGTTTT+GGG + Chr5:5986660-5986679 MsG0580024522.01.T01:CDS 30.0%
!!! GTAGTTTTTTTCTTCTTAGG+GGG - Chr5:5989212-5989231 None:intergenic 30.0%
!!! GTCCAATTTTATTTCTGAAC+AGG - Chr5:5990387-5990406 None:intergenic 30.0%
!!! TAAATTTTTTTGGACTTGGG+GGG - Chr5:5989278-5989297 None:intergenic 30.0%
!!! TACAGTAGTTTTGTCTTTCA+AGG - Chr5:5987424-5987443 None:intergenic 30.0%
!!! TTGCTACTTTTATGAAGTGA+AGG - Chr5:5990361-5990380 None:intergenic 30.0%
!!! TTTCAGGTTGTTATTTTGGT+GGG + Chr5:5988952-5988971 MsG0580024522.01.T01:CDS 30.0%
!!! TTTTCAGGTTGTTATTTTGG+TGG + Chr5:5988951-5988970 MsG0580024522.01.T01:CDS 30.0%
AAAGGTTGAGGGAAAAAAGT+AGG - Chr5:5990868-5990887 None:intergenic 35.0%
AAATAGGATTTGAGTCCAGA+TGG + Chr5:5989571-5989590 MsG0580024522.01.T01:intron 35.0%
ACAAACAATGTAGTCTACAG+CGG - Chr5:5989821-5989840 None:intergenic 35.0%
ACATGCTTTCTGATCTTGAA+TGG + Chr5:5986706-5986725 MsG0580024522.01.T01:CDS 35.0%
ACTATGGTCTAAACCACATT+TGG - Chr5:5990337-5990356 None:intergenic 35.0%
AGCTATTCCATTACTAGATC+TGG - Chr5:5990013-5990032 None:intergenic 35.0%
ATCGCAACTTTGTGAAAGTT+AGG + Chr5:5989433-5989452 MsG0580024522.01.T01:intron 35.0%
ATGTTTGTGGACAGTAGAAT+AGG + Chr5:5990407-5990426 MsG0580024522.01.T01:intron 35.0%
ATTCTTATTGGAAGGATGAG+AGG + Chr5:5987996-5988015 MsG0580024522.01.T01:CDS 35.0%
ATTGATCTCATCACCTTATC+AGG - Chr5:5988187-5988206 None:intergenic 35.0%
CCATATGTCGATGAAAAACT+CGG + Chr5:5991141-5991160 MsG0580024522.01.T01:CDS 35.0%
CTACAGTTGCAAAATTTAGG+GGG - Chr5:5989246-5989265 None:intergenic 35.0%
CTGCTACAGTTGCAAAATTT+AGG - Chr5:5989249-5989268 None:intergenic 35.0%
GAGAAAGAAAGAAATGAGCT+TGG + Chr5:5988978-5988997 MsG0580024522.01.T01:CDS 35.0%
GCTACAGTTGCAAAATTTAG+GGG - Chr5:5989247-5989266 None:intergenic 35.0%
GGATCATCATTCTTATTGGA+AGG + Chr5:5987988-5988007 MsG0580024522.01.T01:CDS 35.0%
GGATTGAATCAACAAAGAAC+TGG + Chr5:5987692-5987711 MsG0580024522.01.T01:CDS 35.0%
GGCATTCTTCTATTCAGAAA+AGG + Chr5:5990183-5990202 MsG0580024522.01.T01:intron 35.0%
GGTTTAGACATTCAGAAAGT+CGG - Chr5:5989121-5989140 None:intergenic 35.0%
GTTTGACCAAGTTCTTGAAT+AGG - Chr5:5988568-5988587 None:intergenic 35.0%
TAAGAATGATGATCCAACTC+AGG - Chr5:5987983-5988002 None:intergenic 35.0%
TACTAACAACAATGGCAACA+TGG + Chr5:5989861-5989880 MsG0580024522.01.T01:CDS 35.0%
TCCATATATCAATTGGTGCA+CGG - Chr5:5986889-5986908 None:intergenic 35.0%
TCGCAACTTTGTGAAAGTTA+GGG + Chr5:5989434-5989453 MsG0580024522.01.T01:intron 35.0%
TCTAAACCACATTTGGAGAA+TGG - Chr5:5990330-5990349 None:intergenic 35.0%
TGAATGGTATTCTCATCGAT+TGG + Chr5:5986722-5986741 MsG0580024522.01.T01:CDS 35.0%
TGATAAGGTGATGAGATCAA+TGG + Chr5:5988186-5988205 MsG0580024522.01.T01:CDS 35.0%
TGTCAAAAGAGTTCCTGATA+AGG + Chr5:5988171-5988190 MsG0580024522.01.T01:CDS 35.0%
TGTTTGTGGACAGTAGAATA+GGG + Chr5:5990408-5990427 MsG0580024522.01.T01:intron 35.0%
TTAGGGAAAAGATCTTTGAG+AGG - Chr5:5989730-5989749 None:intergenic 35.0%
TTGGTGAAATCAGAAAAAGG+TGG + Chr5:5988997-5989016 MsG0580024522.01.T01:CDS 35.0%
TTTCTATTAATCAGTAGGGG+AGG - Chr5:5987791-5987810 None:intergenic 35.0%
! AGCTTGGTGAAATCAGAAAA+AGG + Chr5:5988994-5989013 MsG0580024522.01.T01:CDS 35.0%
! CTTTCACAAAGTTGCGATTT+TGG - Chr5:5989431-5989450 None:intergenic 35.0%
! GGTTTAATTTCGCTTCTTAC+TGG + Chr5:5986681-5986700 MsG0580024522.01.T01:CDS 35.0%
! TCCCTGCAATTATAGTTTTC+TGG - Chr5:5987297-5987316 None:intergenic 35.0%
! TTTTGCAACTGTAGCAGTTT+TGG + Chr5:5989252-5989271 MsG0580024522.01.T01:intron 35.0%
!! TCAAATGGACTGCTATGAAA+CGG - Chr5:5988621-5988640 None:intergenic 35.0%
!! TCAATGGATTGTAGTCTTAC+TGG - Chr5:5989032-5989051 None:intergenic 35.0%
!! TGGCAGTGTTTTTGTGAATT+TGG + Chr5:5988392-5988411 MsG0580024522.01.T01:intron 35.0%
!! TGTTTTTGTGAATTTGGCTG+TGG + Chr5:5988398-5988417 MsG0580024522.01.T01:intron 35.0%
!! TTCCCTCAACCTTTGATTTT+TGG + Chr5:5990874-5990893 MsG0580024522.01.T01:intron 35.0%
!!! AGAACTTGGTTTTGGTCAAT+TGG + Chr5:5988372-5988391 MsG0580024522.01.T01:intron 35.0%
!!! CCCTACTTTTTACTCTAGAT+TGG + Chr5:5986749-5986768 MsG0580024522.01.T01:CDS 35.0%
!!! GCCTTTTCAGGTTGTTATTT+TGG + Chr5:5988948-5988967 MsG0580024522.01.T01:CDS 35.0%
!!! GTCGTGAAGTTGTTTTTGTT+CGG + Chr5:5987134-5987153 MsG0580024522.01.T01:intron 35.0%
!!! TTCAGGTTGTTATTTTGGTG+GGG + Chr5:5988953-5988972 MsG0580024522.01.T01:CDS 35.0%
AACATCAAACCCACTTCATG+AGG - Chr5:5989628-5989647 None:intergenic 40.0%
ACATACCTCTATGTTGCATC+GGG + Chr5:5989673-5989692 MsG0580024522.01.T01:CDS 40.0%
ACCGTGCACCAATTGATATA+TGG + Chr5:5986885-5986904 MsG0580024522.01.T01:CDS 40.0%
ACCTGTCGTCTCAAAAGAAT+TGG - Chr5:5988280-5988299 None:intergenic 40.0%
ACGAATTCTTAATGCTACGC+TGG + Chr5:5987952-5987971 MsG0580024522.01.T01:CDS 40.0%
ATCGGGAGAAATATATGGAG+GGG + Chr5:5989690-5989709 MsG0580024522.01.T01:CDS 40.0%
ATTAGAAATAGGTGGGAGAG+CGG + Chr5:5990102-5990121 MsG0580024522.01.T01:intron 40.0%
ATTTGAGTCCAGATGGAGAA+CGG + Chr5:5989578-5989597 MsG0580024522.01.T01:CDS 40.0%
CAACAAAGAACTGGGTAAGT+AGG + Chr5:5987701-5987720 MsG0580024522.01.T01:intron 40.0%
CAACTACAGCATCTGTTATC+TGG - Chr5:5987928-5987947 None:intergenic 40.0%
CACATACCTCTATGTTGCAT+CGG + Chr5:5989672-5989691 MsG0580024522.01.T01:CDS 40.0%
CATCGGGAGAAATATATGGA+GGG + Chr5:5989689-5989708 MsG0580024522.01.T01:CDS 40.0%
CGCAACTTTGTGAAAGTTAG+GGG + Chr5:5989435-5989454 MsG0580024522.01.T01:intron 40.0%
GAAACTTACGTGCATAATCG+CGG - Chr5:5986955-5986974 None:intergenic 40.0%
GATTATTCTGTTAGGAAGCG+TGG + Chr5:5990047-5990066 MsG0580024522.01.T01:intron 40.0%
GGATTGTCCAGATCTAGTAA+TGG + Chr5:5990003-5990022 MsG0580024522.01.T01:intron 40.0%
GTGCTAAGCTTCTTTGCATT+TGG - Chr5:5990973-5990992 None:intergenic 40.0%
GTTGCATCGGGAGAAATATA+TGG + Chr5:5989685-5989704 MsG0580024522.01.T01:CDS 40.0%
GTTTCATAGCAGTCCATTTG+AGG + Chr5:5988620-5988639 MsG0580024522.01.T01:CDS 40.0%
GTTTGTGGACAGTAGAATAG+GGG + Chr5:5990409-5990428 MsG0580024522.01.T01:intron 40.0%
TGATGACCATTCTCCAAATG+TGG + Chr5:5990321-5990340 MsG0580024522.01.T01:intron 40.0%
TGTTACGAGAATGCAGAAGA+TGG + Chr5:5988591-5988610 MsG0580024522.01.T01:CDS 40.0%
TTGGGACACGCATTGTATAT+GGG - Chr5:5988219-5988238 None:intergenic 40.0%
TTGTGAATTTGGCTGTGGTA+AGG + Chr5:5988403-5988422 MsG0580024522.01.T01:intron 40.0%
TTTGTGGACAGTAGAATAGG+GGG + Chr5:5990410-5990429 MsG0580024522.01.T01:intron 40.0%
TTTGTGGTGTGTTGTGTTAG+TGG + Chr5:5987482-5987501 MsG0580024522.01.T01:intron 40.0%
! AATCGGGTTCTGATTTCCTT+GGG - Chr5:5988237-5988256 None:intergenic 40.0%
! CCGAGTTTTTCATCGACATA+TGG - Chr5:5991144-5991163 None:intergenic 40.0%
! GTTTTTGTAGCTCGTCATCA+AGG - Chr5:5988504-5988523 None:intergenic 40.0%
! TAATCGGGTTCTGATTTCCT+TGG - Chr5:5988238-5988257 None:intergenic 40.0%
! TCCTTGCAAGTCTGTTTTGT+TGG - Chr5:5987268-5987287 None:intergenic 40.0%
!! AAGCTTAGCACACTTTTTGC+GGG + Chr5:5990982-5991001 MsG0580024522.01.T01:CDS 40.0%
!! CCTTGCAAGTCTGTTTTGTT+GGG - Chr5:5987267-5987286 None:intergenic 40.0%
!! GAAGCTTAGCACACTTTTTG+CGG + Chr5:5990981-5991000 MsG0580024522.01.T01:CDS 40.0%
!! GCACGAGAAAGTTGATTTTG+AGG - Chr5:5988779-5988798 None:intergenic 40.0%
!! TTGTTGATTCAATCCTCCAC+TGG - Chr5:5987687-5987706 None:intergenic 40.0%
!!! TCAGGTTGTTATTTTGGTGG+GGG + Chr5:5988954-5988973 MsG0580024522.01.T01:CDS 40.0%
AAAGTCGGCACTGTTGAGAA+AGG - Chr5:5989106-5989125 None:intergenic 45.0%
AACATGGCCAAGATTCTAGC+TGG + Chr5:5989877-5989896 MsG0580024522.01.T01:CDS 45.0%
AAGAGCTGGGAAATTCGTGA+TGG - Chr5:5991107-5991126 None:intergenic 45.0%
AAGGTTAAGGCATGCCAAAG+AGG + Chr5:5991039-5991058 MsG0580024522.01.T01:CDS 45.0%
AGCGTAGACCGAGTCAAAAT+TGG + Chr5:5989336-5989355 MsG0580024522.01.T01:intron 45.0%
AGTCTCCAACGTCAGCTTAT+CGG + Chr5:5987185-5987204 MsG0580024522.01.T01:intron 45.0%
CAGTTGCAAAATTTAGGGGG+CGG - Chr5:5989243-5989262 None:intergenic 45.0%
CATATACAATGCGTGTCCCA+AGG + Chr5:5988218-5988237 MsG0580024522.01.T01:CDS 45.0%
CCCAACAAAACAGACTTGCA+AGG + Chr5:5987264-5987283 MsG0580024522.01.T01:intron 45.0%
CCTCTTACTCCTCATGAAGT+GGG + Chr5:5989616-5989635 MsG0580024522.01.T01:CDS 45.0%
CCTGAAAAGGCTAGCATATC+TGG - Chr5:5988939-5988958 None:intergenic 45.0%
CGGGATGAGAATGGAAGAAA+AGG - Chr5:5989793-5989812 None:intergenic 45.0%
CTCTCACAAACACAAGAGCT+GGG - Chr5:5991120-5991139 None:intergenic 45.0%
CTTGGGACACGCATTGTATA+TGG - Chr5:5988220-5988239 None:intergenic 45.0%
GACAGTAGAATAGGGGGAAT+TGG + Chr5:5990416-5990435 MsG0580024522.01.T01:intron 45.0%
GCATCGGGAGAAATATATGG+AGG + Chr5:5989688-5989707 MsG0580024522.01.T01:CDS 45.0%
GCATGCCAAAGAGGATTCAT+GGG + Chr5:5991048-5991067 MsG0580024522.01.T01:CDS 45.0%
TACCTTCGCCAGAAAGGTTA+AGG + Chr5:5991026-5991045 MsG0580024522.01.T01:CDS 45.0%
TACTATGGATGTAGTGACCG+AGG + Chr5:5986929-5986948 MsG0580024522.01.T01:CDS 45.0%
TACTTGCTTATTGCAGCCAG+TGG + Chr5:5987668-5987687 MsG0580024522.01.T01:CDS 45.0%
TCATGCACATGTGCTTCTGT+GGG + Chr5:5990811-5990830 MsG0580024522.01.T01:intron 45.0%
TCCTCTTACTCCTCATGAAG+TGG + Chr5:5989615-5989634 MsG0580024522.01.T01:CDS 45.0%
TCTCTCACAAACACAAGAGC+TGG - Chr5:5991121-5991140 None:intergenic 45.0%
TGCCACAGGTGCAAAACTTA+GGG + Chr5:5989375-5989394 MsG0580024522.01.T01:intron 45.0%
TGGGACACGCATTGTATATG+GGG - Chr5:5988218-5988237 None:intergenic 45.0%
TTGGCATGCCTTAACCTTTC+TGG - Chr5:5991037-5991056 None:intergenic 45.0%
TTTCTCCCGATGCAACATAG+AGG - Chr5:5989681-5989700 None:intergenic 45.0%
! AATAAGAGTTTGGGATGCGC+AGG + Chr5:5988856-5988875 MsG0580024522.01.T01:intron 45.0%
! ATAAGAGTTTGGGATGCGCA+GGG + Chr5:5988857-5988876 MsG0580024522.01.T01:intron 45.0%
! TTTTGCACCTGTGGCAGTTT+TGG - Chr5:5989371-5989390 None:intergenic 45.0%
!! ACCGAGTCAAAATTGGCCTT+GGG + Chr5:5989343-5989362 MsG0580024522.01.T01:intron 45.0%
!! ATCTCGTGGTCTTTGGTTTG+TGG + Chr5:5986639-5986658 MsG0580024522.01.T01:CDS 45.0%
!! GTGTTGTGTTAGTGGACTTG+TGG + Chr5:5987490-5987509 MsG0580024522.01.T01:intron 45.0%
!! TTAGCACACTTTTTGCGGGA+AGG + Chr5:5990986-5991005 MsG0580024522.01.T01:CDS 45.0%
!!! CCAGATATGCTAGCCTTTTC+AGG + Chr5:5988936-5988955 MsG0580024522.01.T01:CDS 45.0%
!!! GCCAATTCTTTTGAGACGAC+AGG + Chr5:5988276-5988295 MsG0580024522.01.T01:CDS 45.0%
!!! TTCTTTTGAGACGACAGGTG+TGG + Chr5:5988281-5988300 MsG0580024522.01.T01:intron 45.0%
!!! TGTTATTTTTTAAATTTTTT+TGG - Chr5:5989288-5989307 None:intergenic 5.0%
AACACGTGGCACCTCACTTA+GGG + Chr5:5989304-5989323 MsG0580024522.01.T01:intron 50.0%
CAATGTAGTCTACAGCGGCT+AGG - Chr5:5989816-5989835 None:intergenic 50.0%
CAGTAGGGGAGGAACAAAGA+TGG - Chr5:5987780-5987799 None:intergenic 50.0%
CCACACTCTTGCTAGTCGAA+TGG - Chr5:5989076-5989095 None:intergenic 50.0%
CCACAGGTGCAAAACTTAGG+GGG + Chr5:5989377-5989396 MsG0580024522.01.T01:intron 50.0%
CCATTCGACTAGCAAGAGTG+TGG + Chr5:5989073-5989092 MsG0580024522.01.T01:intron 50.0%
CCCACTTCATGAGGAGTAAG+AGG - Chr5:5989619-5989638 None:intergenic 50.0%
CCTTCGACCAGCTAGAATCT+TGG - Chr5:5989887-5989906 None:intergenic 50.0%
CTGCCACAGGTGCAAAACTT+AGG + Chr5:5989374-5989393 MsG0580024522.01.T01:intron 50.0%
GCCACAGGTGCAAAACTTAG+GGG + Chr5:5989376-5989395 MsG0580024522.01.T01:intron 50.0%
GCTCTCCCATGAATCCTCTT+TGG - Chr5:5991056-5991075 None:intergenic 50.0%
GGAGAATGGTCATCACTCCT+TGG - Chr5:5990316-5990335 None:intergenic 50.0%
GGCATGCCAAAGAGGATTCA+TGG + Chr5:5991047-5991066 MsG0580024522.01.T01:CDS 50.0%
GGGACACGCATTGTATATGG+GGG - Chr5:5988217-5988236 None:intergenic 50.0%
GGTTTGATGTTACGCGCACT+TGG + Chr5:5989637-5989656 MsG0580024522.01.T01:CDS 50.0%
GTCATGCACATGTGCTTCTG+TGG + Chr5:5990810-5990829 MsG0580024522.01.T01:intron 50.0%
GTCTCCAACGTCAGCTTATC+GGG + Chr5:5987186-5987205 MsG0580024522.01.T01:intron 50.0%
TAACACGTGGCACCTCACTT+AGG + Chr5:5989303-5989322 MsG0580024522.01.T01:intron 50.0%
TCTCCAACGTCAGCTTATCG+GGG + Chr5:5987187-5987206 MsG0580024522.01.T01:intron 50.0%
TGCAAAATTTAGGGGGCGGT+TGG - Chr5:5989239-5989258 None:intergenic 50.0%
TTGCTTATTGCAGCCAGTGG+AGG + Chr5:5987671-5987690 MsG0580024522.01.T01:CDS 50.0%
! CCAAGATTCTAGCTGGTCGA+AGG + Chr5:5989884-5989903 MsG0580024522.01.T01:CDS 50.0%
! GACCGAGTCAAAATTGGCCT+TGG + Chr5:5989342-5989361 MsG0580024522.01.T01:intron 50.0%
! TAAGAGTTTGGGATGCGCAG+GGG + Chr5:5988858-5988877 MsG0580024522.01.T01:intron 50.0%
! TACGCTGGTTGTACCTGAGT+TGG + Chr5:5987967-5987986 MsG0580024522.01.T01:CDS 50.0%
! TGCCTTAACCTTTCTGGCGA+AGG - Chr5:5991031-5991050 None:intergenic 50.0%
!! CCGAGTCAAAATTGGCCTTG+GGG + Chr5:5989344-5989363 MsG0580024522.01.T01:intron 50.0%
!! CGAGTCAAAATTGGCCTTGG+GGG + Chr5:5989345-5989364 MsG0580024522.01.T01:intron 50.0%
!!! CCCCAAGGCCAATTTTGACT+CGG - Chr5:5989347-5989366 None:intergenic 50.0%
!!! TTTTGCGGGAAGGCATCAGA+TGG + Chr5:5990996-5991015 MsG0580024522.01.T01:CDS 50.0%
CAGATGGAGAACGGAAGCGA+GGG + Chr5:5989587-5989606 MsG0580024522.01.T01:CDS 55.0%
CAGGTGCAAAACTTAGGGGG+CGG + Chr5:5989380-5989399 MsG0580024522.01.T01:intron 55.0%
CGTCCAGGTCTCATCTCATC+TGG - Chr5:5991078-5991097 None:intergenic 55.0%
CTCCAACGTCAGCTTATCGG+GGG + Chr5:5987188-5987207 MsG0580024522.01.T01:intron 55.0%
CTGGCATACCTTCGCCAGAA+AGG + Chr5:5991020-5991039 MsG0580024522.01.T01:CDS 55.0%
GAGCCAGATGAGATGAGACC+TGG + Chr5:5991072-5991091 MsG0580024522.01.T01:CDS 55.0%
GGTCATCACTCCTTGGCAGA+GGG - Chr5:5990309-5990328 None:intergenic 55.0%
GTGCGTGAGCAGATGTCGAA+TGG + Chr5:5987644-5987663 MsG0580024522.01.T01:intron 55.0%
TACGTGCATAATCGCGGCCT+CGG - Chr5:5986949-5986968 None:intergenic 55.0%
TCGTGATGGTCATCTCGTCC+AGG - Chr5:5991093-5991112 None:intergenic 55.0%
TGGTCATCACTCCTTGGCAG+AGG - Chr5:5990310-5990329 None:intergenic 55.0%
TGTAGTCTACAGCGGCTAGG+CGG - Chr5:5989813-5989832 None:intergenic 55.0%
! CCCCCTAAGTTTTGCACCTG+TGG - Chr5:5989380-5989399 None:intergenic 55.0%
! TGGGAGAGCGGTTAGCTGTA+TGG + Chr5:5990114-5990133 MsG0580024522.01.T01:intron 55.0%
!! TCCTTGGCAGAGGGCATTGT+GGG - Chr5:5990300-5990319 None:intergenic 55.0%
CCAGATGGAGAACGGAAGCG+AGG + Chr5:5989586-5989605 MsG0580024522.01.T01:CDS 60.0%
CCTCGCTTCCGTTCTCCATC+TGG - Chr5:5989589-5989608 None:intergenic 60.0%
CTGACGTGGCACCCTAAGTG+AGG - Chr5:5989318-5989337 None:intergenic 60.0%
GTAGTCTACAGCGGCTAGGC+GGG - Chr5:5989812-5989831 None:intergenic 60.0%
TGCCCCCGATAAGCTGACGT+TGG - Chr5:5987193-5987212 None:intergenic 60.0%
TTGGGGGCCAAAACTGCCAC+AGG + Chr5:5989361-5989380 MsG0580024522.01.T01:intron 60.0%
!! CGGGAAGGCATCAGATGGAC+TGG + Chr5:5991001-5991020 MsG0580024522.01.T01:CDS 60.0%
!! CTCCTTGGCAGAGGGCATTG+TGG - Chr5:5990301-5990320 None:intergenic 60.0%
!! TGACTCGGTCTACGCTGACG+TGG - Chr5:5989332-5989351 None:intergenic 60.0%
!! TGTGGCAGTTTTGGCCCCCA+AGG - Chr5:5989362-5989381 None:intergenic 60.0%
GCCCACAATGCCCTCTGCCA+AGG + Chr5:5990296-5990315 MsG0580024522.01.T01:intron 65.0%
GCGGCTAGGCGGGATGAGAA+TGG - Chr5:5989802-5989821 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
Chr5 gene 5986633 5991182 5986633 ID=MsG0580024522.01;Name=MsG0580024522.01
Chr5 mRNA 5986633 5991182 5986633 ID=MsG0580024522.01.T01;Parent=MsG0580024522.01;Name=MsG0580024522.01.T01;_AED=0.50;_eAED=0.52;_QI=0|0|0|1|1|1|9|0|474
Chr5 exon 5986633 5986770 5986633 ID=MsG0580024522.01.T01:exon:19144;Parent=MsG0580024522.01.T01
Chr5 exon 5986875 5986965 5986875 ID=MsG0580024522.01.T01:exon:19145;Parent=MsG0580024522.01.T01
Chr5 exon 5987656 5987714 5987656 ID=MsG0580024522.01.T01:exon:19146;Parent=MsG0580024522.01.T01
Chr5 exon 5987929 5988017 5987929 ID=MsG0580024522.01.T01:exon:19147;Parent=MsG0580024522.01.T01
Chr5 exon 5988108 5988297 5988108 ID=MsG0580024522.01.T01:exon:19148;Parent=MsG0580024522.01.T01
Chr5 exon 5988460 5988641 5988460 ID=MsG0580024522.01.T01:exon:19149;Parent=MsG0580024522.01.T01
Chr5 exon 5988929 5989031 5988929 ID=MsG0580024522.01.T01:exon:19150;Parent=MsG0580024522.01.T01
Chr5 exon 5989577 5989905 5989577 ID=MsG0580024522.01.T01:exon:19151;Parent=MsG0580024522.01.T01
Chr5 exon 5990939 5991182 5990939 ID=MsG0580024522.01.T01:exon:19152;Parent=MsG0580024522.01.T01
Chr5 CDS 5986633 5986770 5986633 ID=MsG0580024522.01.T01:cds;Parent=MsG0580024522.01.T01
Chr5 CDS 5986875 5986965 5986875 ID=MsG0580024522.01.T01:cds;Parent=MsG0580024522.01.T01
Chr5 CDS 5987656 5987714 5987656 ID=MsG0580024522.01.T01:cds;Parent=MsG0580024522.01.T01
Chr5 CDS 5987929 5988017 5987929 ID=MsG0580024522.01.T01:cds;Parent=MsG0580024522.01.T01
Chr5 CDS 5988108 5988297 5988108 ID=MsG0580024522.01.T01:cds;Parent=MsG0580024522.01.T01
Chr5 CDS 5988460 5988641 5988460 ID=MsG0580024522.01.T01:cds;Parent=MsG0580024522.01.T01
Chr5 CDS 5988929 5989031 5988929 ID=MsG0580024522.01.T01:cds;Parent=MsG0580024522.01.T01
Chr5 CDS 5989577 5989905 5989577 ID=MsG0580024522.01.T01:cds;Parent=MsG0580024522.01.T01
Chr5 CDS 5990939 5991182 5990939 ID=MsG0580024522.01.T01:cds;Parent=MsG0580024522.01.T01
Gene Sequence

>MsG0580024522.01.T01

ATGACGATCTCGTGGTCTTTGGTTTGTGGTTTGATGCTTTTTGTTTTGGGTTTAATTTCGCTTCTTACTGGTCACATGCTTTCTGATCTTGAATGGTATTCTCATCGATTGGTTCACCCTACTTTTTACTCTAGATTGGATGGGCATTACCGTGCACCAATTGATATATGGAAATCTAAATTGTCTAAATATTACTATGGATGTAGTGACCGAGGCCGCGATTATGCACATGTCGAATGGCTACTTGCTTATTGCAGCCAGTGGAGGATTGAATCAACAAAGAACTGGATAACAGATGCTGTAGTTGTTGCACGAATTCTTAATGCTACGCTGGTTGTACCTGAGTTGGATCATCATTCTTATTGGAAGGATGAGAGTGACTTTATCAATATTTTCGATGTTGATTGGTTCATTTCTTATCTCGCAAAAGACGTCACTATTGTCAAAAGAGTTCCTGATAAGGTGATGAGATCAATGGAAAAACCCCCATATACAATGCGTGTCCCAAGGAAATCAGAACCCGATTATTATCTTGATCAAGTTTTGCCAATTCTTTTGAGACGACAGGTTGTACAATTGACGAAGTTTGACTTTAGACTTGCGAATCACCTTGATGACGAGCTACAAAAACTACGATGCCGTGTTAATTTTCATGCTTTGAGATTCACAAAACCTATTCAAGAACTTGGTCAAACAATTGTTACGAGAATGCAGAAGATGGCTCACCGTTTCATAGCAGTCCATTTGAGATTTGAACCAGATATGCTAGCCTTTTCAGGTTGTTATTTTGGTGGGGGAGAGAAAGAAAGAAATGAGCTTGGTGAAATCAGAAAAAGGTGGACAACATTACCAGATTTGAGTCCAGATGGAGAACGGAAGCGAGGGAAATGTCCTCTTACTCCTCATGAAGTGGGTTTGATGTTACGCGCACTTGGTTTTACAAATGACACATACCTCTATGTTGCATCGGGAGAAATATATGGAGGGGACGAGACTATGCAGCCTCTCAAAGATCTTTTCCCTAACATCTATACAAAGGAGATGCTTGCTGATGAAGAGCTGAAACCTTTTCTTCCATTCTCATCCCGCCTAGCCGCTGTAGACTACATTGTTTGTGATGAAAGCGATGTATTTGTTACTAACAACAATGGCAACATGGCCAAGATTCTAGCTGGTCGAAGGAGATATATGGGTCACAAAAGAACAATTAGACCAAATGCAAAGAAGCTTAGCACACTTTTTGCGGGAAGGCATCAGATGGACTGGCATACCTTCGCCAGAAAGGTTAAGGCATGCCAAAGAGGATTCATGGGAGAGCCAGATGAGATGAGACCTGGACGAGATGACCATCACGAATTTCCCAGCTCTTGTGTTTGTGAGAGACCATATGTCGATGAAAAACTCGGTACAAAGATTGATACCTGA
Protein sequence

>MsG0580024522.01.T01

MTISWSLVCGLMLFVLGLISLLTGHMLSDLEWYSHRLVHPTFYSRLDGHYRAPIDIWKSKLSKYYYGCSDRGRDYAHVEWLLAYCSQWRIESTKNWITDAVVVARILNATLVVPELDHHSYWKDESDFINIFDVDWFISYLAKDVTIVKRVPDKVMRSMEKPPYTMRVPRKSEPDYYLDQVLPILLRRQVVQLTKFDFRLANHLDDELQKLRCRVNFHALRFTKPIQELGQTIVTRMQKMAHRFIAVHLRFEPDMLAFSGCYFGGGEKERNELGEIRKRWTTLPDLSPDGERKRGKCPLTPHEVGLMLRALGFTNDTYLYVASGEIYGGDETMQPLKDLFPNIYTKEMLADEELKPFLPFSSRLAAVDYIVCDESDVFVTNNNGNMAKILAGRRRYMGHKRTIRPNAKKLSTLFAGRHQMDWHTFARKVKACQRGFMGEPDEMRPGRDDHHEFPSSCVCERPYVDEKLGTKIDT*