AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0580024530.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0580024530.01.T01 MTR_5g012770 93.714 525 13 3 1 521 1 509 0.0 1011
MsG0580024530.01.T01 MTR_4g100810 81.579 494 86 2 20 513 8 496 0.0 858
MsG0580024530.01.T01 MTR_3g115220 56.301 492 200 5 29 507 4 493 0.0 559
MsG0580024530.01.T01 MTR_5g099010 56.900 471 178 5 49 507 43 500 0.0 548
MsG0580024530.01.T01 MTR_1g031590 41.204 432 222 10 97 506 125 546 1.26e-107 332
MsG0580024530.01.T01 MTR_4g084570 41.509 424 225 10 112 513 132 554 2.51e-103 321
MsG0580024530.01.T01 MTR_3g005340 41.355 428 230 9 98 508 123 546 2.94e-101 316
MsG0580024530.01.T01 MTR_5g042200 42.857 413 213 9 121 516 81 487 5.01e-100 310
MsG0580024530.01.T01 MTR_4g019210 41.435 432 227 11 93 508 202 623 5.03e-99 312
MsG0580024530.01.T01 MTR_4g082310 42.651 415 213 10 120 516 92 499 6.92e-99 308
MsG0580024530.01.T01 MTR_5g064620 42.347 392 213 7 95 481 84 467 3.20e-95 299
MsG0580024530.01.T01 MTR_5g081690 39.862 434 229 14 95 509 93 513 7.61e-95 298
MsG0580024530.01.T01 MTR_6g016015 42.893 401 215 8 118 505 108 507 7.68e-95 298
MsG0580024530.01.T01 MTR_4g125460 39.310 435 236 9 90 507 56 479 2.53e-94 295
MsG0580024530.01.T01 MTR_5g059260 45.915 355 170 7 126 461 158 509 5.20e-94 298
MsG0580024530.01.T01 MTR_3g086570 36.719 512 269 17 33 506 53 547 5.62e-94 296
MsG0580024530.01.T01 MTR_4g110030 41.895 401 219 8 118 505 109 508 7.90e-94 295
MsG0580024530.01.T01 MTR_3g099480 42.172 396 215 7 97 485 115 503 1.40e-93 295
MsG0580024530.01.T01 MTR_2g059350 41.935 403 216 9 118 505 108 507 4.81e-93 293
MsG0580024530.01.T01 MTR_4g125460 39.310 435 236 9 90 507 195 618 1.39e-92 295
MsG0580024530.01.T01 MTR_2g016470 37.923 414 210 10 109 477 174 585 5.01e-90 288
MsG0580024530.01.T01 MTR_3g096020 37.045 467 274 8 4 461 70 525 3.75e-89 285
MsG0580024530.01.T01 MTR_4g132590 36.617 467 236 13 92 506 34 492 2.63e-86 275
MsG0580024530.01.T01 MTR_4g132590 36.617 467 236 13 92 506 133 591 6.14e-85 274
MsG0580024530.01.T01 MTR_5g032100 36.404 456 233 12 96 507 60 502 7.91e-82 263
MsG0580024530.01.T01 MTR_3g100310 37.471 427 226 13 117 506 93 515 1.39e-77 253
MsG0580024530.01.T01 MTR_1g102030 40.599 367 202 6 125 477 88 452 4.06e-77 252
MsG0580024530.01.T01 MTR_3g026650 37.292 421 248 9 96 506 142 556 7.11e-75 247
MsG0580024530.01.T01 MTR_4g023030 37.762 429 247 10 96 512 202 622 1.01e-71 240
MsG0580024530.01.T01 MTR_3g086570 36.675 379 196 13 40 390 68 430 5.99e-68 225
MsG0580024530.01.T01 MTR_3g026650 39.255 349 201 5 96 437 142 486 1.83e-65 220
MsG0580024530.01.T01 MTR_1g101990 41.176 255 145 4 237 487 6 259 7.51e-52 179
MsG0580024530.01.T01 MTR_4g010990 31.608 367 221 9 95 450 46 393 2.78e-51 181
MsG0580024530.01.T01 MTR_4g010990 32.087 321 189 8 141 450 2 304 9.74e-46 164
MsG0580024530.01.T01 MTR_7g017330 33.075 387 214 16 44 397 11 385 1.70e-45 169
MsG0580024530.01.T01 MTR_3g092590 29.867 375 244 8 44 400 7 380 6.05e-42 158
MsG0580024530.01.T01 MTR_3g092590 29.867 375 244 8 44 400 7 380 1.64e-41 158
MsG0580024530.01.T01 MTR_3g026650 37.405 262 154 4 96 351 142 399 6.24e-40 149
MsG0580024530.01.T01 MTR_1g007390 28.609 381 247 9 44 400 7 386 4.00e-35 140
MsG0580024530.01.T01 MTR_7g064210 41.279 172 82 4 246 402 26 193 4.08e-32 128
MsG0580024530.01.T01 MTR_2g038320 29.310 348 198 13 117 453 84 394 3.99e-30 122
MsG0580024530.01.T01 MTR_4g008200 28.382 377 213 15 90 452 5 338 8.83e-28 114
MsG0580024530.01.T01 MTR_4g008200 28.382 377 213 15 90 452 56 389 2.41e-27 114
MsG0580024530.01.T01 MTR_1g101985 44.340 106 57 1 96 201 61 164 5.43e-22 93.6
MsG0580024530.01.T01 MTR_1g095680 43.023 86 38 1 251 325 9 94 3.37e-12 63.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0580024530.01.T01 AT4G16650 72.780 518 136 3 1 517 1 514 0.0 768
MsG0580024530.01.T01 AT4G16650 72.780 518 136 3 1 517 1 514 0.0 768
MsG0580024530.01.T01 AT4G38390 57.576 462 194 2 47 506 44 505 0.0 550
MsG0580024530.01.T01 AT1G20550 54.865 483 205 5 49 521 24 503 0.0 543
MsG0580024530.01.T01 AT1G76270 60.432 417 162 2 92 507 73 487 0.0 540
MsG0580024530.01.T01 AT1G14970 43.230 421 216 10 110 508 15 434 2.43e-109 333
MsG0580024530.01.T01 AT1G14970 44.279 402 206 9 124 508 8 408 5.55e-109 331
MsG0580024530.01.T01 AT1G14970 42.000 450 236 11 81 508 108 554 1.79e-108 335
MsG0580024530.01.T01 AT2G01480 42.993 421 217 10 110 508 134 553 2.93e-107 332
MsG0580024530.01.T01 AT2G01480 46.113 373 180 8 110 461 134 506 4.93e-106 327
MsG0580024530.01.T01 AT2G03280 43.921 403 202 10 121 505 84 480 1.39e-99 309
MsG0580024530.01.T01 AT1G14020 43.108 399 214 7 121 507 87 484 1.45e-98 307
MsG0580024530.01.T01 AT1G35510 40.920 435 229 9 95 509 133 559 2.89e-98 308
MsG0580024530.01.T01 AT5G15740 42.394 401 217 8 118 505 99 498 7.56e-97 303
MsG0580024530.01.T01 AT3G02250 43.142 401 214 8 118 505 99 498 1.07e-96 303
MsG0580024530.01.T01 AT1G38065 42.250 400 202 10 106 488 13 400 2.30e-96 300
MsG0580024530.01.T01 AT1G38065 43.570 381 192 9 125 488 36 410 5.44e-96 299
MsG0580024530.01.T01 AT2G37980 38.826 443 237 11 96 518 199 627 7.39e-96 304
MsG0580024530.01.T01 AT1G38131 43.570 381 192 9 125 488 155 529 8.82e-95 300
MsG0580024530.01.T01 AT3G26370 38.964 444 238 12 90 507 120 556 1.34e-93 296
MsG0580024530.01.T01 AT2G03280 41.176 425 209 9 121 505 84 507 1.52e-93 294
MsG0580024530.01.T01 AT5G64600 44.152 342 183 4 125 462 117 454 1.45e-92 292
MsG0580024530.01.T01 AT1G22460 42.935 368 199 7 97 460 135 495 1.48e-91 291
MsG0580024530.01.T01 AT3G54100 38.128 438 246 12 92 513 190 618 2.51e-91 292
MsG0580024530.01.T01 AT5G35570 40.416 433 220 12 97 507 225 641 5.79e-90 289
MsG0580024530.01.T01 AT1G62330 35.991 464 240 13 94 506 192 649 7.80e-89 286
MsG0580024530.01.T01 AT1G04910 36.966 468 270 10 48 507 25 475 1.02e-88 282
MsG0580024530.01.T01 AT5G01100 36.427 431 244 11 96 507 190 609 9.62e-86 277
MsG0580024530.01.T01 AT1G11990 38.272 405 227 10 96 481 163 563 6.03e-85 274
MsG0580024530.01.T01 AT4G24530 35.491 479 257 13 72 507 48 517 9.82e-84 269
MsG0580024530.01.T01 AT1G29200 38.298 423 216 9 99 477 43 464 4.91e-83 266
MsG0580024530.01.T01 AT1G29200 38.298 423 216 9 99 477 43 464 4.91e-83 266
MsG0580024530.01.T01 AT1G29200 38.298 423 216 9 99 477 159 580 5.80e-82 267
MsG0580024530.01.T01 AT5G65470 34.967 449 249 11 96 506 59 502 2.41e-79 257
MsG0580024530.01.T01 AT1G29200 39.130 391 194 8 130 477 1 390 1.14e-78 253
MsG0580024530.01.T01 AT1G11990 35.068 442 227 11 96 481 148 585 2.70e-78 257
MsG0580024530.01.T01 AT2G44500 38.551 428 234 12 96 506 146 561 1.49e-76 252
MsG0580024530.01.T01 AT5G63390 36.667 420 253 8 96 506 133 548 1.96e-74 246
MsG0580024530.01.T01 AT3G07900 37.731 432 252 10 88 508 149 574 2.40e-73 243
MsG0580024530.01.T01 AT1G52630 31.884 345 208 7 125 460 74 400 4.35e-50 178
MsG0580024530.01.T01 AT3G26370 37.052 251 141 6 90 326 120 367 2.47e-45 164
MsG0580024530.01.T01 AT3G30300 35.644 303 173 9 112 397 90 387 4.01e-45 169
MsG0580024530.01.T01 AT3G30300 35.644 303 173 9 112 397 90 387 4.01e-45 169
MsG0580024530.01.T01 AT1G52630 30.120 332 199 7 141 460 2 312 1.56e-44 160
MsG0580024530.01.T01 AT3G03810 34.106 302 183 8 114 400 79 379 1.94e-42 160
MsG0580024530.01.T01 AT3G03810 34.106 302 183 8 114 400 79 379 1.94e-42 160
MsG0580024530.01.T01 AT2G44500 36.641 262 157 4 96 351 146 404 3.04e-40 150
MsG0580024530.01.T01 AT3G21190 28.235 340 195 12 125 452 90 392 7.03e-27 113
MsG0580024530.01.T01 AT1G51630 27.941 340 196 12 125 452 91 393 1.74e-25 109

Find 104 sgRNAs with CRISPR-Local

Find 321 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTGGCATGCCTTAACCTTTC+TGG 0.108482 5:-6088234 None:intergenic
GGTTTAATTTCGCTTCTTAC+TGG 0.232835 5:+6083841 MsG0580024530.01.T01:CDS
TGTTTATAATAGGAGATATA+TGG 0.246061 5:+6088127 MsG0580024530.01.T01:intron
ATTGATCTCATCACCTTATC+AGG 0.260179 5:-6085377 None:intergenic
CTTGGGACACGCATTGTATA+TGG 0.264993 5:-6085410 None:intergenic
CCTGAAAAGGCTAGCATATC+TGG 0.273488 5:-6086129 None:intergenic
CCTCGCTTCCGTTCTCCATC+TGG 0.279056 5:-6086780 None:intergenic
AGTTGGATCATCATTCTTAT+TGG 0.287747 5:+6085177 MsG0580024530.01.T01:CDS
CATGACGATCTCGTGGTCTT+TGG 0.289859 5:+6083792 MsG0580024530.01.T01:CDS
ATCTCCTTTGTATAGATGTT+AGG 0.318976 5:-6086939 None:intergenic
GTGCTAAGCTTCTTTGCATT+TGG 0.323021 5:-6088170 None:intergenic
AACTTGATCAAGATAATAAT+CGG 0.343642 5:-6085444 None:intergenic
ATAGGTAAGGCTTGGAGGTT+AGG 0.347071 5:+6083682 MsG0580024530.01.T01:CDS
ATCTCGTGGTCTTTGGTTTG+TGG 0.362348 5:+6083799 MsG0580024530.01.T01:CDS
GCTCTCCCATGAATCCTCTT+TGG 0.363004 5:-6088253 None:intergenic
GTTGCATCGGGAGAAATATA+TGG 0.373675 5:+6086879 MsG0580024530.01.T01:CDS
GTTTGACCAAGTTCTTGAAT+AGG 0.379703 5:-6085758 None:intergenic
ACCGTGCACCAATTGATATA+TGG 0.382336 5:+6084049 MsG0580024530.01.T01:CDS
AGCTTGGTGAAATCAGAAAA+AGG 0.386962 5:+6086187 MsG0580024530.01.T01:CDS
ACCTGTCGTCTCAAAAGAAT+TGG 0.388497 5:-6085470 None:intergenic
TTGGGACACGCATTGTATAT+GGG 0.397785 5:-6085409 None:intergenic
TTAGATTTCCATATATCAAT+TGG 0.403180 5:-6084057 None:intergenic
GGATTGAATCAACAAAGAAC+TGG 0.404396 5:+6084884 MsG0580024530.01.T01:CDS
GGCATGCCAAAGAGGATTCA+TGG 0.413310 5:+6088247 MsG0580024530.01.T01:CDS
CCTTCGACCAGCTAGAATCT+TGG 0.414719 5:-6087078 None:intergenic
TAATCGGGTTCTGATTTCCT+TGG 0.421676 5:-6085428 None:intergenic
GTTTATAATAGGAGATATAT+GGG 0.423059 5:+6088128 MsG0580024530.01.T01:intron
AAATTGTCTAAATATTACTA+TGG 0.426138 5:+6084078 MsG0580024530.01.T01:CDS
CGTCCAGGTCTCATCTCATC+TGG 0.430826 5:-6088275 None:intergenic
AATCGGGTTCTGATTTCCTT+GGG 0.434363 5:-6085427 None:intergenic
CCCACTTCATGAGGAGTAAG+AGG 0.434476 5:-6086810 None:intergenic
TCTCCTTTGTATAGATGTTA+GGG 0.441328 5:-6086938 None:intergenic
GTTTCATAGCAGTCCATTTG+AGG 0.448307 5:+6085813 MsG0580024530.01.T01:CDS
ACATGCTTTCTGATCTTGAA+TGG 0.450545 5:+6083866 MsG0580024530.01.T01:CDS
TACCTTCGCCAGAAAGGTTA+AGG 0.454344 5:+6088226 MsG0580024530.01.T01:CDS
TGTTGTTTGGTAACAAAGCT+AGG 0.462226 5:-6083720 None:intergenic
TACGTGCATAATCGCGGCCT+CGG 0.477640 5:-6084110 None:intergenic
ACCAAAATAACAACCTGAAA+AGG 0.486933 5:-6086142 None:intergenic
GAGAAAGAAAGAAATGAGCT+TGG 0.488177 5:+6086171 MsG0580024530.01.T01:CDS
GCTGAAATGGGTGTGAGTAT+AGG 0.488919 5:+6083664 None:intergenic
TCTCTCACAAACACAAGAGC+TGG 0.490882 5:-6088318 None:intergenic
TGCCTTAACCTTTCTGGCGA+AGG 0.491638 5:-6088228 None:intergenic
ACAAAACCTATTCAAGAACT+TGG 0.495920 5:+6085752 MsG0580024530.01.T01:CDS
GTAGTCTACAGCGGCTAGGC+GGG 0.497730 5:-6087003 None:intergenic
GCGGCTAGGCGGGATGAGAA+TGG 0.503816 5:-6086993 None:intergenic
TGTCAAAAGAGTTCCTGATA+AGG 0.507750 5:+6085364 MsG0580024530.01.T01:CDS
GGTTTGATGTTACGCGCACT+TGG 0.513582 5:+6086831 MsG0580024530.01.T01:CDS
CACATACCTCTATGTTGCAT+CGG 0.516486 5:+6086866 MsG0580024530.01.T01:CDS
TGAATGGTATTCTCATCGAT+TGG 0.519424 5:+6083882 MsG0580024530.01.T01:CDS
CGGGATGAGAATGGAAGAAA+AGG 0.524026 5:-6086984 None:intergenic
CGGGAAGGCATCAGATGGAC+TGG 0.526918 5:+6088201 MsG0580024530.01.T01:CDS
TGAGTATAGGTAAGGCTTGG+AGG 0.527965 5:+6083677 MsG0580024530.01.T01:CDS
TGGGACACGCATTGTATATG+GGG 0.528406 5:-6085408 None:intergenic
ACATACCTCTATGTTGCATC+GGG 0.530349 5:+6086867 MsG0580024530.01.T01:CDS
GGATCATCATTCTTATTGGA+AGG 0.535696 5:+6085181 MsG0580024530.01.T01:CDS
ACTTGATCAAGATAATAATC+GGG 0.536000 5:-6085443 None:intergenic
TCAAATGGACTGCTATGAAA+CGG 0.539398 5:-6085811 None:intergenic
TCCTCTTACTCCTCATGAAG+TGG 0.539526 5:+6086809 MsG0580024530.01.T01:CDS
CCTCTTACTCCTCATGAAGT+GGG 0.541378 5:+6086810 MsG0580024530.01.T01:CDS
TACTTGCTTATTGCAGCTAG+TGG 0.544271 5:+6084860 MsG0580024530.01.T01:CDS
GAGCCAGATGAGATGAGACC+TGG 0.545176 5:+6088272 MsG0580024530.01.T01:CDS
TGATAAGGTGATGAGATCAA+TGG 0.547039 5:+6085379 MsG0580024530.01.T01:CDS
CTGGCATACCTTCGCCAGAA+AGG 0.547774 5:+6088220 MsG0580024530.01.T01:CDS
AAATAGGATTTGAGTCCAGA+TGG 0.553327 5:+6086765 MsG0580024530.01.T01:intron
CTCTCACAAACACAAGAGCT+GGG 0.560650 5:-6088317 None:intergenic
AACATGGCCAAGATTCTAGC+TGG 0.561681 5:+6087071 MsG0580024530.01.T01:CDS
GCATGCCAAAGAGGATTCAT+GGG 0.563632 5:+6088248 MsG0580024530.01.T01:CDS
TTGCTTATTGCAGCTAGTGG+AGG 0.569118 5:+6084863 MsG0580024530.01.T01:CDS
TGTTACGAGAATGCAGAAGA+TGG 0.570027 5:+6085784 MsG0580024530.01.T01:CDS
TCCATATATCAATTGGTGCA+CGG 0.574106 5:-6084050 None:intergenic
TCGTGATGGTCATCTCGTCC+AGG 0.574549 5:-6088290 None:intergenic
AATGGGTGTGAGTATAGGTA+AGG 0.584194 5:+6083669 None:intergenic
ATTCTTATTGGAAGGATGAG+AGG 0.587254 5:+6085189 MsG0580024530.01.T01:CDS
GTGTGAGTATAGGTAAGGCT+TGG 0.588001 5:+6083674 MsG0580024530.01.T01:CDS
ACGAATTCTTAATGCTACGC+TGG 0.588010 5:+6085145 MsG0580024530.01.T01:CDS
ATTTGAGTCCAGATGGAGAA+CGG 0.597126 5:+6086772 MsG0580024530.01.T01:CDS
TTTCCCTAACATCTATACAA+AGG 0.599447 5:+6086935 MsG0580024530.01.T01:CDS
TACTAACAACAATGGCAACA+TGG 0.600721 5:+6087055 MsG0580024530.01.T01:CDS
GATTGAATCAACAAAGAACT+GGG 0.605354 5:+6084885 MsG0580024530.01.T01:CDS
CCAAGATTCTAGCTGGTCGA+AGG 0.607748 5:+6087078 MsG0580024530.01.T01:CDS
CAGATGGAGAACGGAAGCGA+GGG 0.610738 5:+6086781 MsG0580024530.01.T01:CDS
CCAGATGGAGAACGGAAGCG+AGG 0.610998 5:+6086780 MsG0580024530.01.T01:CDS
AACATCAAACCCACTTCATG+AGG 0.611141 5:-6086819 None:intergenic
TACGCTGGTTGTACCTGAGT+TGG 0.611847 5:+6085160 MsG0580024530.01.T01:CDS
TTTCTCCCGATGCAACATAG+AGG 0.613162 5:-6086872 None:intergenic
CAATGTAGTCTACAGCGGCT+AGG 0.614499 5:-6087007 None:intergenic
GGGACACGCATTGTATATGG+GGG 0.616024 5:-6085407 None:intergenic
CATATACAATGCGTGTCCCA+AGG 0.618244 5:+6085411 MsG0580024530.01.T01:CDS
GTATTTGTTACTAACAACAA+TGG 0.620898 5:+6087047 MsG0580024530.01.T01:CDS
TGTAGTCTACAGCGGCTAGG+CGG 0.622536 5:-6087004 None:intergenic
TAAGAATGATGATCCAACTC+AGG 0.623565 5:-6085173 None:intergenic
GAAACTTACGTGCATAATCG+CGG 0.624468 5:-6084116 None:intergenic
ATCGGGAGAAATATATGGAG+GGG 0.625932 5:+6086884 MsG0580024530.01.T01:CDS
AAGGTTAAGGCATGCCAAAG+AGG 0.627153 5:+6088239 MsG0580024530.01.T01:CDS
GCATCGGGAGAAATATATGG+AGG 0.640908 5:+6086882 MsG0580024530.01.T01:CDS
CATCGGGAGAAATATATGGA+GGG 0.644373 5:+6086883 MsG0580024530.01.T01:CDS
GTGCGTGAGCAGATGTCGAA+TGG 0.645428 5:+6084836 MsG0580024530.01.T01:CDS
TTAGGGAAAAGATCTTTGAG+AGG 0.654145 5:-6086921 None:intergenic
TACTATGGATGTAGTGACCG+AGG 0.661648 5:+6084093 MsG0580024530.01.T01:CDS
AAGAGCTGGGAAATTCGTGA+TGG 0.664397 5:-6088304 None:intergenic
AGAACAACATGACGATCTCG+TGG 0.676268 5:+6083785 MsG0580024530.01.T01:CDS
TCAAAGCATGAAAATTAACA+CGG 0.699065 5:-6085724 None:intergenic
ATTGAATCAACAAAGAACTG+GGG 0.728844 5:+6084886 MsG0580024530.01.T01:CDS
ACAAACAATGTAGTCTACAG+CGG 0.728868 5:-6087012 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAAAAATAGAAAGATTAATA+AGG - Chr5:6083957-6083976 None:intergenic 10.0%
!!! TTTTAATTATAATTCATTGT+TGG + Chr5:6084163-6084182 MsG0580024530.01.T01:intron 10.0%
!!! TTTTGATTTATATTAGAAAT+AGG + Chr5:6087287-6087306 MsG0580024530.01.T01:intron 10.0%
!! AAAATTTAAAAAATAACACG+TGG + Chr5:6086483-6086502 MsG0580024530.01.T01:intron 15.0%
!! AAATTGTCTAAATATTACTA+TGG + Chr5:6084078-6084097 MsG0580024530.01.T01:CDS 15.0%
!! ATTGTTAATTGCAATTAAAA+AGG - Chr5:6086079-6086098 None:intergenic 15.0%
!! TATTTGTTTACTTATACTTT+GGG + Chr5:6085924-6085943 MsG0580024530.01.T01:intron 15.0%
!!! GCTTGAAATTTTTATTTTAA+TGG + Chr5:6085503-6085522 MsG0580024530.01.T01:intron 15.0%
!!! TATTTTTCTATTAATCAGTA+GGG - Chr5:6084988-6085007 None:intergenic 15.0%
!!! TTATTTTTCTATTAATCAGT+AGG - Chr5:6084989-6085008 None:intergenic 15.0%
!!! TTCGTAATCAAATTTAAAAT+TGG + Chr5:6084136-6084155 MsG0580024530.01.T01:intron 15.0%
!!! TTTAAATTTTTTTTGGACTT+GGG - Chr5:6086473-6086492 None:intergenic 15.0%
!!! TTTTAAATTTTTTTTGGACT+TGG - Chr5:6086474-6086493 None:intergenic 15.0%
!!! TTTTGTAGTTTTTTTTCTTA+GGG + Chr5:6086596-6086615 MsG0580024530.01.T01:intron 15.0%
!! AAATAAAAATTTCAAGCAAG+TGG - Chr5:6085500-6085519 None:intergenic 20.0%
!! AACTTGATCAAGATAATAAT+CGG - Chr5:6085447-6085466 None:intergenic 20.0%
!! AATGACAAAGTTGAAAAAAA+TGG - Chr5:6087798-6087817 None:intergenic 20.0%
!! AATGTTAGAAATAAGAGTTT+GGG + Chr5:6086040-6086059 MsG0580024530.01.T01:intron 20.0%
!! CATATAAGAATCAAGTTTAA+TGG + Chr5:6085237-6085256 MsG0580024530.01.T01:intron 20.0%
!! CATTAAACTTGATTCTTATA+TGG - Chr5:6085239-6085258 None:intergenic 20.0%
!! GAACAAATCAAAATACAAAA+TGG - Chr5:6084725-6084744 None:intergenic 20.0%
!! GATTTATATTAGAAATAGGT+GGG + Chr5:6087291-6087310 MsG0580024530.01.T01:intron 20.0%
!! GTATTTGTTTACTTATACTT+TGG + Chr5:6085923-6085942 MsG0580024530.01.T01:intron 20.0%
!! GTTGAAAAAAATGGTAAATA+AGG - Chr5:6087789-6087808 None:intergenic 20.0%
!! GTTTATAATAGGAGATATAT+GGG + Chr5:6088128-6088147 MsG0580024530.01.T01:intron 20.0%
!! TAACAAATGATCTTAAGAAT+GGG + Chr5:6084747-6084766 MsG0580024530.01.T01:intron 20.0%
!! TATCCTCAATTATTAACTAT+TGG - Chr5:6087757-6087776 None:intergenic 20.0%
!! TGATTTATATTAGAAATAGG+TGG + Chr5:6087290-6087309 MsG0580024530.01.T01:intron 20.0%
!! TGTTCGTTTATTACATAAAT+GGG + Chr5:6087134-6087153 MsG0580024530.01.T01:intron 20.0%
!! TGTTTATAATAGGAGATATA+TGG + Chr5:6088127-6088146 MsG0580024530.01.T01:intron 20.0%
!! TTAACAAATGATCTTAAGAA+TGG + Chr5:6084746-6084765 MsG0580024530.01.T01:intron 20.0%
!! TTAGATTTCCATATATCAAT+TGG - Chr5:6084060-6084079 None:intergenic 20.0%
!! TTATGTAATAAACGAACAAA+AGG - Chr5:6087132-6087151 None:intergenic 20.0%
!! TTCAATTTCAAAACATTGTA+AGG - Chr5:6085860-6085879 None:intergenic 20.0%
!! TTGTTCGTTTATTACATAAA+TGG + Chr5:6087133-6087152 MsG0580024530.01.T01:intron 20.0%
!! TTTAGATTACAACGTTAATT+AGG - Chr5:6087718-6087737 None:intergenic 20.0%
!! TTTCCAATAGTTAATAATTG+AGG + Chr5:6087751-6087770 MsG0580024530.01.T01:intron 20.0%
!!! AATAGTTTTCTGTTTATGTA+GGG + Chr5:6084420-6084439 MsG0580024530.01.T01:intron 20.0%
!!! ATGAAATGAGAATTTTGTTT+AGG + Chr5:6084942-6084961 MsG0580024530.01.T01:intron 20.0%
!!! ATTTTGATTTTTTGTAGGAT+GGG + Chr5:6084022-6084041 MsG0580024530.01.T01:intron 20.0%
!!! ATTTTTCTATTAATCAGTAG+GGG - Chr5:6084987-6085006 None:intergenic 20.0%
!!! GTAGTTTTTTTTTCTTCTTA+GGG - Chr5:6086408-6086427 None:intergenic 20.0%
!!! GTGTTATTTTGATTTTTTGT+AGG + Chr5:6084017-6084036 MsG0580024530.01.T01:intron 20.0%
!!! GTTTTGTAGTTTTTTTTCTT+AGG + Chr5:6086595-6086614 MsG0580024530.01.T01:intron 20.0%
!!! TAACAAGTTATACTTTTCAT+AGG - Chr5:6087874-6087893 None:intergenic 20.0%
!!! TAGTTTTTTTTTCTTCTTAG+GGG - Chr5:6086407-6086426 None:intergenic 20.0%
!!! TATTTTGATTTTTTGTAGGA+TGG + Chr5:6084021-6084040 MsG0580024530.01.T01:intron 20.0%
!!! TGCATAGCAAAATAATTTTT+AGG - Chr5:6086672-6086691 None:intergenic 20.0%
!!! TGTAGTTTTTTTTTCTTCTT+AGG - Chr5:6086409-6086428 None:intergenic 20.0%
!!! TTAAATTTTTTTTGGACTTG+GGG - Chr5:6086472-6086491 None:intergenic 20.0%
!!! TTGACTGTATTTTTAGTTTT+TGG + Chr5:6084197-6084216 MsG0580024530.01.T01:intron 20.0%
!!! TTTGTAGTTTTTTTTCTTAG+GGG + Chr5:6086597-6086616 MsG0580024530.01.T01:intron 20.0%
! AACTCTACAGTTTGAATATT+AGG - Chr5:6087686-6087705 None:intergenic 25.0%
! AATAAAATTGGACATGTTTG+TGG + Chr5:6087592-6087611 MsG0580024530.01.T01:intron 25.0%
! ACTTGATCAAGATAATAATC+GGG - Chr5:6085446-6085465 None:intergenic 25.0%
! AGTATGTATATCATAGATTC+AGG + Chr5:6087974-6087993 MsG0580024530.01.T01:intron 25.0%
! ATAGTGATGATTATTCTGTT+AGG + Chr5:6087235-6087254 MsG0580024530.01.T01:intron 25.0%
! ATGCATTCTAAGTAAAAATC+AGG + Chr5:6086363-6086382 MsG0580024530.01.T01:intron 25.0%
! ATTGTATCATTAGAAGTCAA+TGG - Chr5:6086241-6086260 None:intergenic 25.0%
! CAAGTAATGTGATAGAAAAT+AGG - Chr5:6084526-6084545 None:intergenic 25.0%
! CAATGTTAGAAATAAGAGTT+TGG + Chr5:6086039-6086058 MsG0580024530.01.T01:intron 25.0%
! CATATTGAATGTTTCATTTG+TGG + Chr5:6084660-6084679 MsG0580024530.01.T01:intron 25.0%
! GTAAGAATACAAAACTACTA+TGG + Chr5:6087100-6087119 MsG0580024530.01.T01:intron 25.0%
! TAAAGCTTGTATATGGAATT+TGG + Chr5:6087907-6087926 MsG0580024530.01.T01:intron 25.0%
! TCAAAGCATGAAAATTAACA+CGG - Chr5:6085727-6085746 None:intergenic 25.0%
!! CAATAGTTTTCTGTTTATGT+AGG + Chr5:6084419-6084438 MsG0580024530.01.T01:intron 25.0%
!! CACTTCTCTTTGTTTATAAT+AGG + Chr5:6088117-6088136 MsG0580024530.01.T01:intron 25.0%
!! CACTTTCTTCTTTTCATAAT+CGG + Chr5:6084799-6084818 MsG0580024530.01.T01:intron 25.0%
!! GCTTTTTAACCAAAAATCAA+AGG - Chr5:6088086-6088105 None:intergenic 25.0%
!! GTATTTGTTACTAACAACAA+TGG + Chr5:6087047-6087066 MsG0580024530.01.T01:CDS 25.0%
!! TCAAATCCTATTTTATCACA+AGG - Chr5:6086758-6086777 None:intergenic 25.0%
!! TCAATATTTTCGATGTTGAT+TGG + Chr5:6085309-6085328 MsG0580024530.01.T01:CDS 25.0%
!! TTTCATAGGAATTTTTGCTT+TGG - Chr5:6087860-6087879 None:intergenic 25.0%
!! TTTTACTTAGAATGCATATC+AGG - Chr5:6086360-6086379 None:intergenic 25.0%
!!! AAAAGTATAACTTGTTACAG+GGG + Chr5:6087877-6087896 MsG0580024530.01.T01:intron 25.0%
!!! AAAGAGAAGTGTTTAAAAGA+AGG - Chr5:6088108-6088127 None:intergenic 25.0%
!!! AGTTTTTTTTTCTTCTTAGG+GGG - Chr5:6086406-6086425 None:intergenic 25.0%
!!! CAAACTCTTATTTCTAACAT+TGG - Chr5:6086041-6086060 None:intergenic 25.0%
!!! GAAAAGTATAACTTGTTACA+GGG + Chr5:6087876-6087895 MsG0580024530.01.T01:intron 25.0%
!!! TAAATTTTTTTTGGACTTGG+GGG - Chr5:6086471-6086490 None:intergenic 25.0%
!!! TCCAATTTTATTTCTGAACA+GGG - Chr5:6087584-6087603 None:intergenic 25.0%
!!! TGAAAAGTATAACTTGTTAC+AGG + Chr5:6087875-6087894 MsG0580024530.01.T01:intron 25.0%
!!! TGTTGTTTCTTTTTGTTGTT+TGG - Chr5:6083736-6083755 None:intergenic 25.0%
!!! TTGTAGTTTTTTTTCTTAGG+GGG + Chr5:6086598-6086617 MsG0580024530.01.T01:intron 25.0%
AACCAAAAATCAAAGGTTGA+GGG - Chr5:6088079-6088098 None:intergenic 30.0%
AACTACTGTATCAAGTGAAA+AGG + Chr5:6084627-6084646 MsG0580024530.01.T01:intron 30.0%
ACAAAACCTATTCAAGAACT+TGG + Chr5:6085752-6085771 MsG0580024530.01.T01:CDS 30.0%
ACCAAAATAACAACCTGAAA+AGG - Chr5:6086145-6086164 None:intergenic 30.0%
ACCCTGTTCAGAAATAAAAT+TGG + Chr5:6087580-6087599 MsG0580024530.01.T01:intron 30.0%
ACTACTGTATCAAGTGAAAA+GGG + Chr5:6084628-6084647 MsG0580024530.01.T01:intron 30.0%
AGTTGGATCATCATTCTTAT+TGG + Chr5:6085177-6085196 MsG0580024530.01.T01:CDS 30.0%
ATCTCCTTTGTATAGATGTT+AGG - Chr5:6086942-6086961 None:intergenic 30.0%
ATTGAATCAACAAAGAACTG+GGG + Chr5:6084886-6084905 MsG0580024530.01.T01:CDS 30.0%
CAGAAAACACTATAATTGCA+GGG + Chr5:6084481-6084500 MsG0580024530.01.T01:intron 30.0%
CAGAAAAGAAAAACCTCAAA+TGG - Chr5:6085829-6085848 None:intergenic 30.0%
CATTTAAACGCAATCAACAA+AGG + Chr5:6087178-6087197 MsG0580024530.01.T01:intron 30.0%
CTTGATGAAACATAAGAACT+TGG + Chr5:6085551-6085570 MsG0580024530.01.T01:intron 30.0%
CTTGTATATGGAATTTGGTT+TGG + Chr5:6087912-6087931 MsG0580024530.01.T01:intron 30.0%
GAAAAGAAGAAAGTGAGAAA+TGG - Chr5:6084794-6084813 None:intergenic 30.0%
GATGAAGAATCATAATTGTC+CGG - Chr5:6085099-6085118 None:intergenic 30.0%
GATTGAATCAACAAAGAACT+GGG + Chr5:6084885-6084904 MsG0580024530.01.T01:CDS 30.0%
GTTTCATCAAGACAGTTATT+TGG - Chr5:6085542-6085561 None:intergenic 30.0%
GTTTCTGTAAAGCTTGTATA+TGG + Chr5:6087900-6087919 MsG0580024530.01.T01:intron 30.0%
TAACATTAAGGAGATGTTTC+AGG + Chr5:6085631-6085650 MsG0580024530.01.T01:intron 30.0%
TAACCAAAAATCAAAGGTTG+AGG - Chr5:6088080-6088099 None:intergenic 30.0%
TATGTTTCAAGAAACAGTGT+AGG - Chr5:6086336-6086355 None:intergenic 30.0%
TCTCCTTTGTATAGATGTTA+GGG - Chr5:6086941-6086960 None:intergenic 30.0%
TGATTGAGCAACTAACATTA+AGG + Chr5:6085619-6085638 MsG0580024530.01.T01:intron 30.0%
TGCTACAGTTGCAAAATTTA+GGG - Chr5:6086440-6086459 None:intergenic 30.0%
TGTAATAAACGAACAAAAGG+AGG - Chr5:6087129-6087148 None:intergenic 30.0%
TTGTTGCCTTGTGATAAAAT+AGG + Chr5:6086749-6086768 MsG0580024530.01.T01:intron 30.0%
TTTATGTTCTGTTTATTCGC+TGG + Chr5:6087358-6087377 MsG0580024530.01.T01:intron 30.0%
TTTCCCTAACATCTATACAA+AGG + Chr5:6086935-6086954 MsG0580024530.01.T01:CDS 30.0%
! ACATACTTTTGCATCAAGTT+TGG - Chr5:6087961-6087980 None:intergenic 30.0%
! ACCAATCTAGAGTAAAAAGT+AGG - Chr5:6083913-6083932 None:intergenic 30.0%
! CCAATCTAGAGTAAAAAGTA+GGG - Chr5:6083912-6083931 None:intergenic 30.0%
! GAAACATAAGAACTTGGTTT+TGG + Chr5:6085557-6085576 MsG0580024530.01.T01:intron 30.0%
! TTACTTATACTTTGGGTTTG+TGG + Chr5:6085931-6085950 MsG0580024530.01.T01:intron 30.0%
!! AAAGTATAACTTGTTACAGG+GGG + Chr5:6087878-6087897 MsG0580024530.01.T01:intron 30.0%
!! AGTTGTTTTCTGTGAATATG+AGG + Chr5:6085050-6085069 MsG0580024530.01.T01:intron 30.0%
!! ATGAGACTTTTGATTATGAC+CGG + Chr5:6085077-6085096 MsG0580024530.01.T01:intron 30.0%
!! TGGTTTGATGCTTTTTGTTT+TGG + Chr5:6083819-6083838 MsG0580024530.01.T01:CDS 30.0%
!!! AAATTTTTTTTGGACTTGGG+GGG - Chr5:6086470-6086489 None:intergenic 30.0%
!!! AAGTTGTTTTTGTTTGGGTT+CGG + Chr5:6084316-6084335 MsG0580024530.01.T01:intron 30.0%
!!! ACAGTAGTTTTGTCTTTCAA+GGG - Chr5:6084616-6084635 None:intergenic 30.0%
!!! CGTGAAAGTTGTTTTTGTTT+GGG + Chr5:6084311-6084330 MsG0580024530.01.T01:intron 30.0%
!!! GAGTTGATTTGATTTTTCGT+TGG + Chr5:6087834-6087853 MsG0580024530.01.T01:intron 30.0%
!!! GGTTTGATGCTTTTTGTTTT+GGG + Chr5:6083820-6083839 MsG0580024530.01.T01:CDS 30.0%
!!! GTCCAATTTTATTTCTGAAC+AGG - Chr5:6087585-6087604 None:intergenic 30.0%
!!! TACAGTAGTTTTGTCTTTCA+AGG - Chr5:6084617-6084636 None:intergenic 30.0%
!!! TCGTGAAAGTTGTTTTTGTT+TGG + Chr5:6084310-6084329 MsG0580024530.01.T01:intron 30.0%
!!! TTGCTACTTTTATGAAGTGA+AGG - Chr5:6087559-6087578 None:intergenic 30.0%
!!! TTTCAGGTTGTTATTTTGGT+GGG + Chr5:6086145-6086164 MsG0580024530.01.T01:CDS 30.0%
!!! TTTTCAGGTTGTTATTTTGG+TGG + Chr5:6086144-6086163 MsG0580024530.01.T01:CDS 30.0%
AAATAGGATTTGAGTCCAGA+TGG + Chr5:6086765-6086784 MsG0580024530.01.T01:intron 35.0%
AAGGTTGAGGGAAAAAAAGT+AGG - Chr5:6088067-6088086 None:intergenic 35.0%
ACAAACAATGTAGTCTACAG+CGG - Chr5:6087015-6087034 None:intergenic 35.0%
ACATGCTTTCTGATCTTGAA+TGG + Chr5:6083866-6083885 MsG0580024530.01.T01:CDS 35.0%
AGCTATTCCATTACTAGATC+TGG - Chr5:6087209-6087228 None:intergenic 35.0%
ATCGCAACTTTGTGAAAGTT+AGG + Chr5:6086626-6086645 MsG0580024530.01.T01:intron 35.0%
ATGTTTGTGGACAGTAGAAT+AGG + Chr5:6087605-6087624 MsG0580024530.01.T01:intron 35.0%
ATTCTTATTGGAAGGATGAG+AGG + Chr5:6085189-6085208 MsG0580024530.01.T01:CDS 35.0%
ATTGATCTCATCACCTTATC+AGG - Chr5:6085380-6085399 None:intergenic 35.0%
CCAGAAAACACTATAATTGC+AGG + Chr5:6084480-6084499 MsG0580024530.01.T01:intron 35.0%
CCATATGTCGATGAAAAACT+CGG + Chr5:6088341-6088360 MsG0580024530.01.T01:CDS 35.0%
CTACAGTTGCAAAATTTAGG+GGG - Chr5:6086438-6086457 None:intergenic 35.0%
CTGCTACAGTTGCAAAATTT+AGG - Chr5:6086441-6086460 None:intergenic 35.0%
GAGAAAGAAAGAAATGAGCT+TGG + Chr5:6086171-6086190 MsG0580024530.01.T01:CDS 35.0%
GCTACAGTTGCAAAATTTAG+GGG - Chr5:6086439-6086458 None:intergenic 35.0%
GGATCATCATTCTTATTGGA+AGG + Chr5:6085181-6085200 MsG0580024530.01.T01:CDS 35.0%
GGATTGAATCAACAAAGAAC+TGG + Chr5:6084884-6084903 MsG0580024530.01.T01:CDS 35.0%
GGCATTCTTCTATTCAGAAA+AGG + Chr5:6087379-6087398 MsG0580024530.01.T01:intron 35.0%
GGTTTAGACATTCAGAAAGT+CGG - Chr5:6086315-6086334 None:intergenic 35.0%
GTACAAAGATTGATACCTGA+AGG + Chr5:6088363-6088382 MsG0580024530.01.T01:CDS 35.0%
GTTTGACCAAGTTCTTGAAT+AGG - Chr5:6085761-6085780 None:intergenic 35.0%
TAAGAATGATGATCCAACTC+AGG - Chr5:6085176-6085195 None:intergenic 35.0%
TACTAACAACAATGGCAACA+TGG + Chr5:6087055-6087074 MsG0580024530.01.T01:CDS 35.0%
TCCATATATCAATTGGTGCA+CGG - Chr5:6084053-6084072 None:intergenic 35.0%
TCGCAACTTTGTGAAAGTTA+GGG + Chr5:6086627-6086646 MsG0580024530.01.T01:intron 35.0%
TCTAAACCACATTTGGAGAA+TGG - Chr5:6087527-6087546 None:intergenic 35.0%
TGAATGGTATTCTCATCGAT+TGG + Chr5:6083882-6083901 MsG0580024530.01.T01:CDS 35.0%
TGATAAGGTGATGAGATCAA+TGG + Chr5:6085379-6085398 MsG0580024530.01.T01:CDS 35.0%
TGTCAAAAGAGTTCCTGATA+AGG + Chr5:6085364-6085383 MsG0580024530.01.T01:CDS 35.0%
TTAGGGAAAAGATCTTTGAG+AGG - Chr5:6086924-6086943 None:intergenic 35.0%
TTGGTGAAATCAGAAAAAGG+TGG + Chr5:6086190-6086209 MsG0580024530.01.T01:CDS 35.0%
TTTCTATTAATCAGTAGGGG+AGG - Chr5:6084984-6085003 None:intergenic 35.0%
! AGCTTGGTGAAATCAGAAAA+AGG + Chr5:6086187-6086206 MsG0580024530.01.T01:CDS 35.0%
! CAACAGTTTTCGAATTTGCA+AGG - Chr5:6084343-6084362 None:intergenic 35.0%
! CCTGCAATTATAGTGTTTTC+TGG - Chr5:6084483-6084502 None:intergenic 35.0%
! CTTTCACAAAGTTGCGATTT+TGG - Chr5:6086624-6086643 None:intergenic 35.0%
! GGTTTAATTTCGCTTCTTAC+TGG + Chr5:6083841-6083860 MsG0580024530.01.T01:CDS 35.0%
! TGTTGTTTGGTAACAAAGCT+AGG - Chr5:6083723-6083742 None:intergenic 35.0%
! TTTTGCAACTGTAGCAGTTT+TGG + Chr5:6086444-6086463 MsG0580024530.01.T01:intron 35.0%
!! TCAAATGGACTGCTATGAAA+CGG - Chr5:6085814-6085833 None:intergenic 35.0%
!! TCAATGGATTGTAGTCTTAC+TGG - Chr5:6086225-6086244 None:intergenic 35.0%
!! TGGCAGTGTTTTTGTGAATT+TGG + Chr5:6085585-6085604 MsG0580024530.01.T01:intron 35.0%
!! TGTTTTTGTGAATTTGGCTG+TGG + Chr5:6085591-6085610 MsG0580024530.01.T01:intron 35.0%
!! TTATGAAGTGAAGGTACCTA+TGG - Chr5:6087550-6087569 None:intergenic 35.0%
!! TTCCCTCAACCTTTGATTTT+TGG + Chr5:6088074-6088093 MsG0580024530.01.T01:intron 35.0%
!!! AGAACTTGGTTTTGGTCAAT+TGG + Chr5:6085565-6085584 MsG0580024530.01.T01:intron 35.0%
!!! CCCTACTTTTTACTCTAGAT+TGG + Chr5:6083909-6083928 MsG0580024530.01.T01:CDS 35.0%
!!! CTTGCAAGTCTGTTTTGTTT+GGG - Chr5:6084452-6084471 None:intergenic 35.0%
!!! GCCTTTTCAGGTTGTTATTT+TGG + Chr5:6086141-6086160 MsG0580024530.01.T01:CDS 35.0%
!!! TTCAGGTTGTTATTTTGGTG+GGG + Chr5:6086146-6086165 MsG0580024530.01.T01:CDS 35.0%
AACAAAGAACTGGGGTAAGT+AGG + Chr5:6084894-6084913 MsG0580024530.01.T01:intron 40.0%
AACATCAAACCCACTTCATG+AGG - Chr5:6086822-6086841 None:intergenic 40.0%
ACAGTAGAATAGGAGGGAAT+TGG + Chr5:6087615-6087634 MsG0580024530.01.T01:intron 40.0%
ACATACCTCTATGTTGCATC+GGG + Chr5:6086867-6086886 MsG0580024530.01.T01:CDS 40.0%
ACCGTGCACCAATTGATATA+TGG + Chr5:6084049-6084068 MsG0580024530.01.T01:CDS 40.0%
ACCTGTCGTCTCAAAAGAAT+TGG - Chr5:6085473-6085492 None:intergenic 40.0%
ACGAATTCTTAATGCTACGC+TGG + Chr5:6085145-6085164 MsG0580024530.01.T01:CDS 40.0%
ATCGGGAGAAATATATGGAG+GGG + Chr5:6086884-6086903 MsG0580024530.01.T01:CDS 40.0%
ATTAGAAATAGGTGGGAGAG+CGG + Chr5:6087298-6087317 MsG0580024530.01.T01:intron 40.0%
ATTTGAGTCCAGATGGAGAA+CGG + Chr5:6086772-6086791 MsG0580024530.01.T01:CDS 40.0%
CAACTACAGCATCTGTTATC+TGG - Chr5:6085121-6085140 None:intergenic 40.0%
CACATACCTCTATGTTGCAT+CGG + Chr5:6086866-6086885 MsG0580024530.01.T01:CDS 40.0%
CATCGGGAGAAATATATGGA+GGG + Chr5:6086883-6086902 MsG0580024530.01.T01:CDS 40.0%
CCAAACAAAACAGACTTGCA+AGG + Chr5:6084450-6084469 MsG0580024530.01.T01:intron 40.0%
CCAAATGTGGTTTAGACCAT+AGG + Chr5:6087531-6087550 MsG0580024530.01.T01:intron 40.0%
CCTATGGTCTAAACCACATT+TGG - Chr5:6087534-6087553 None:intergenic 40.0%
CGCAACTTTGTGAAAGTTAG+GGG + Chr5:6086628-6086647 MsG0580024530.01.T01:intron 40.0%
GAAACTTACGTGCATAATCG+CGG - Chr5:6084119-6084138 None:intergenic 40.0%
GATTATTCTGTTAGGAAGCG+TGG + Chr5:6087243-6087262 MsG0580024530.01.T01:intron 40.0%
GCAACTTTGTGAAAGTTAGG+GGG + Chr5:6086629-6086648 MsG0580024530.01.T01:intron 40.0%
GGATTGTCCAGATCTAGTAA+TGG + Chr5:6087199-6087218 MsG0580024530.01.T01:intron 40.0%
GTGCTAAGCTTCTTTGCATT+TGG - Chr5:6088173-6088192 None:intergenic 40.0%
GTTGCATCGGGAGAAATATA+TGG + Chr5:6086879-6086898 MsG0580024530.01.T01:CDS 40.0%
GTTTCATAGCAGTCCATTTG+AGG + Chr5:6085813-6085832 MsG0580024530.01.T01:CDS 40.0%
TACTTGCTTATTGCAGCTAG+TGG + Chr5:6084860-6084879 MsG0580024530.01.T01:CDS 40.0%
TGATGACCATTCTCCAAATG+TGG + Chr5:6087518-6087537 MsG0580024530.01.T01:intron 40.0%
TGTTACGAGAATGCAGAAGA+TGG + Chr5:6085784-6085803 MsG0580024530.01.T01:CDS 40.0%
TTGGGACACGCATTGTATAT+GGG - Chr5:6085412-6085431 None:intergenic 40.0%
TTGTGAATTTGGCTGTGGTA+AGG + Chr5:6085596-6085615 MsG0580024530.01.T01:intron 40.0%
TTGTGGACAGTAGAATAGGA+GGG + Chr5:6087609-6087628 MsG0580024530.01.T01:intron 40.0%
TTTGTGGACAGTAGAATAGG+AGG + Chr5:6087608-6087627 MsG0580024530.01.T01:intron 40.0%
TTTGTGGTGTGTTGTGTTAG+TGG + Chr5:6084676-6084695 MsG0580024530.01.T01:intron 40.0%
! AATCGGGTTCTGATTTCCTT+GGG - Chr5:6085430-6085449 None:intergenic 40.0%
! CCGAGTTTTTCATCGACATA+TGG - Chr5:6088344-6088363 None:intergenic 40.0%
! GTTTTTGTAGCTCGTCATCA+AGG - Chr5:6085697-6085716 None:intergenic 40.0%
! TAATCGGGTTCTGATTTCCT+TGG - Chr5:6085431-6085450 None:intergenic 40.0%
!! AAGCTTAGCACACTTTTTGC+GGG + Chr5:6088182-6088201 MsG0580024530.01.T01:CDS 40.0%
!! CCTTGCAAGTCTGTTTTGTT+TGG - Chr5:6084453-6084472 None:intergenic 40.0%
!! GAAGCTTAGCACACTTTTTG+CGG + Chr5:6088181-6088200 MsG0580024530.01.T01:CDS 40.0%
!! GCACGAGAAAGTTGATTTTG+AGG - Chr5:6085972-6085991 None:intergenic 40.0%
!!! TCAGGTTGTTATTTTGGTGG+GGG + Chr5:6086147-6086166 MsG0580024530.01.T01:CDS 40.0%
AAAGTCGGCACTGTTGAGAA+AGG - Chr5:6086300-6086319 None:intergenic 45.0%
AACATGGCCAAGATTCTAGC+TGG + Chr5:6087071-6087090 MsG0580024530.01.T01:CDS 45.0%
AAGAGCTGGGAAATTCGTGA+TGG - Chr5:6088307-6088326 None:intergenic 45.0%
AAGGTTAAGGCATGCCAAAG+AGG + Chr5:6088239-6088258 MsG0580024530.01.T01:CDS 45.0%
AGAACAACATGACGATCTCG+TGG + Chr5:6083785-6083804 MsG0580024530.01.T01:CDS 45.0%
AGCGTAGACCGAGTCAAAAT+TGG + Chr5:6086529-6086548 MsG0580024530.01.T01:intron 45.0%
AGTCTCCAACGTCAGCTTAT+CGG + Chr5:6084368-6084387 MsG0580024530.01.T01:intron 45.0%
ATAGGTAAGGCTTGGAGGTT+AGG + Chr5:6083682-6083701 MsG0580024530.01.T01:CDS 45.0%
CAGTTGCAAAATTTAGGGGG+CGG - Chr5:6086435-6086454 None:intergenic 45.0%
CATATACAATGCGTGTCCCA+AGG + Chr5:6085411-6085430 MsG0580024530.01.T01:CDS 45.0%
CCTCTTACTCCTCATGAAGT+GGG + Chr5:6086810-6086829 MsG0580024530.01.T01:CDS 45.0%
CCTGAAAAGGCTAGCATATC+TGG - Chr5:6086132-6086151 None:intergenic 45.0%
CGGGATGAGAATGGAAGAAA+AGG - Chr5:6086987-6087006 None:intergenic 45.0%
CTCTCACAAACACAAGAGCT+GGG - Chr5:6088320-6088339 None:intergenic 45.0%
CTTGGGACACGCATTGTATA+TGG - Chr5:6085413-6085432 None:intergenic 45.0%
GCATCGGGAGAAATATATGG+AGG + Chr5:6086882-6086901 MsG0580024530.01.T01:CDS 45.0%
GCATGCCAAAGAGGATTCAT+GGG + Chr5:6088248-6088267 MsG0580024530.01.T01:CDS 45.0%
GTGTGAGTATAGGTAAGGCT+TGG + Chr5:6083674-6083693 MsG0580024530.01.T01:CDS 45.0%
TACCTTCGCCAGAAAGGTTA+AGG + Chr5:6088226-6088245 MsG0580024530.01.T01:CDS 45.0%
TACTATGGATGTAGTGACCG+AGG + Chr5:6084093-6084112 MsG0580024530.01.T01:CDS 45.0%
TCATGCACATGTGCTTCTGT+GGG + Chr5:6088010-6088029 MsG0580024530.01.T01:intron 45.0%
TCCTCTTACTCCTCATGAAG+TGG + Chr5:6086809-6086828 MsG0580024530.01.T01:CDS 45.0%
TCTCTCACAAACACAAGAGC+TGG - Chr5:6088321-6088340 None:intergenic 45.0%
TGAGTATAGGTAAGGCTTGG+AGG + Chr5:6083677-6083696 MsG0580024530.01.T01:CDS 45.0%
TGCCACAGGTGCAAAACTTA+GGG + Chr5:6086568-6086587 MsG0580024530.01.T01:intron 45.0%
TGGGACACGCATTGTATATG+GGG - Chr5:6085411-6085430 None:intergenic 45.0%
TTGCTTATTGCAGCTAGTGG+AGG + Chr5:6084863-6084882 MsG0580024530.01.T01:CDS 45.0%
TTGGCATGCCTTAACCTTTC+TGG - Chr5:6088237-6088256 None:intergenic 45.0%
TTTCTCCCGATGCAACATAG+AGG - Chr5:6086875-6086894 None:intergenic 45.0%
! AATAAGAGTTTGGGATGCGC+AGG + Chr5:6086049-6086068 MsG0580024530.01.T01:intron 45.0%
! ATAAGAGTTTGGGATGCGCA+GGG + Chr5:6086050-6086069 MsG0580024530.01.T01:intron 45.0%
! TTTTGCACCTGTGGCAGTTT+TGG - Chr5:6086564-6086583 None:intergenic 45.0%
!! ACCGAGTCAAAATTGGCCTT+GGG + Chr5:6086536-6086555 MsG0580024530.01.T01:intron 45.0%
!! ATCTCGTGGTCTTTGGTTTG+TGG + Chr5:6083799-6083818 MsG0580024530.01.T01:CDS 45.0%
!! GTGTTGTGTTAGTGGACTTG+TGG + Chr5:6084684-6084703 MsG0580024530.01.T01:intron 45.0%
!! TTAGCACACTTTTTGCGGGA+AGG + Chr5:6088186-6088205 MsG0580024530.01.T01:CDS 45.0%
!!! CCAGATATGCTAGCCTTTTC+AGG + Chr5:6086129-6086148 MsG0580024530.01.T01:CDS 45.0%
!!! GCCAATTCTTTTGAGACGAC+AGG + Chr5:6085469-6085488 MsG0580024530.01.T01:CDS 45.0%
!!! TTCTTTTGAGACGACAGGTG+TGG + Chr5:6085474-6085493 MsG0580024530.01.T01:intron 45.0%
!!! GTTATTTTTTAAATTTTTTT+TGG - Chr5:6086480-6086499 None:intergenic 5.0%
AACACGTGGCACCTCACTTA+GGG + Chr5:6086497-6086516 MsG0580024530.01.T01:intron 50.0%
CAATGTAGTCTACAGCGGCT+AGG - Chr5:6087010-6087029 None:intergenic 50.0%
CAGTAGGGGAGGAACAAAGA+TGG - Chr5:6084973-6084992 None:intergenic 50.0%
CATGACGATCTCGTGGTCTT+TGG + Chr5:6083792-6083811 MsG0580024530.01.T01:CDS 50.0%
CCACACTCTTGCTAGTCGAA+TGG - Chr5:6086269-6086288 None:intergenic 50.0%
CCACAGGTGCAAAACTTAGG+GGG + Chr5:6086570-6086589 MsG0580024530.01.T01:intron 50.0%
CCATTCGACTAGCAAGAGTG+TGG + Chr5:6086266-6086285 MsG0580024530.01.T01:intron 50.0%
CCCACTTCATGAGGAGTAAG+AGG - Chr5:6086813-6086832 None:intergenic 50.0%
CCTTCGACCAGCTAGAATCT+TGG - Chr5:6087081-6087100 None:intergenic 50.0%
CTGCCACAGGTGCAAAACTT+AGG + Chr5:6086567-6086586 MsG0580024530.01.T01:intron 50.0%
GCCACAGGTGCAAAACTTAG+GGG + Chr5:6086569-6086588 MsG0580024530.01.T01:intron 50.0%
GCTCTCCCATGAATCCTCTT+TGG - Chr5:6088256-6088275 None:intergenic 50.0%
GGAGAATGGTCATCACTCCT+TGG - Chr5:6087513-6087532 None:intergenic 50.0%
GGCATGCCAAAGAGGATTCA+TGG + Chr5:6088247-6088266 MsG0580024530.01.T01:CDS 50.0%
GGGACACGCATTGTATATGG+GGG - Chr5:6085410-6085429 None:intergenic 50.0%
GGTTTGATGTTACGCGCACT+TGG + Chr5:6086831-6086850 MsG0580024530.01.T01:CDS 50.0%
GTCATGCACATGTGCTTCTG+TGG + Chr5:6088009-6088028 MsG0580024530.01.T01:intron 50.0%
GTCTCCAACGTCAGCTTATC+GGG + Chr5:6084369-6084388 MsG0580024530.01.T01:intron 50.0%
TAACACGTGGCACCTCACTT+AGG + Chr5:6086496-6086515 MsG0580024530.01.T01:intron 50.0%
TCTCCAACGTCAGCTTATCG+GGG + Chr5:6084370-6084389 MsG0580024530.01.T01:intron 50.0%
! CCAAGATTCTAGCTGGTCGA+AGG + Chr5:6087078-6087097 MsG0580024530.01.T01:CDS 50.0%
! GACCGAGTCAAAATTGGCCT+TGG + Chr5:6086535-6086554 MsG0580024530.01.T01:intron 50.0%
! TAAGAGTTTGGGATGCGCAG+GGG + Chr5:6086051-6086070 MsG0580024530.01.T01:intron 50.0%
! TACGCTGGTTGTACCTGAGT+TGG + Chr5:6085160-6085179 MsG0580024530.01.T01:CDS 50.0%
! TGCCTTAACCTTTCTGGCGA+AGG - Chr5:6088231-6088250 None:intergenic 50.0%
!! CCGAGTCAAAATTGGCCTTG+GGG + Chr5:6086537-6086556 MsG0580024530.01.T01:intron 50.0%
!! CGAGTCAAAATTGGCCTTGG+GGG + Chr5:6086538-6086557 MsG0580024530.01.T01:intron 50.0%
!!! CCCCAAGGCCAATTTTGACT+CGG - Chr5:6086540-6086559 None:intergenic 50.0%
!!! TTTTGCGGGAAGGCATCAGA+TGG + Chr5:6088196-6088215 MsG0580024530.01.T01:CDS 50.0%
CAGATGGAGAACGGAAGCGA+GGG + Chr5:6086781-6086800 MsG0580024530.01.T01:CDS 55.0%
CAGGTGCAAAACTTAGGGGG+CGG + Chr5:6086573-6086592 MsG0580024530.01.T01:intron 55.0%
CGTCCAGGTCTCATCTCATC+TGG - Chr5:6088278-6088297 None:intergenic 55.0%
CTCCAACGTCAGCTTATCGG+GGG + Chr5:6084371-6084390 MsG0580024530.01.T01:intron 55.0%
CTGGCATACCTTCGCCAGAA+AGG + Chr5:6088220-6088239 MsG0580024530.01.T01:CDS 55.0%
GAGCCAGATGAGATGAGACC+TGG + Chr5:6088272-6088291 MsG0580024530.01.T01:CDS 55.0%
GGTCATCACTCCTTGGCAGA+GGG - Chr5:6087506-6087525 None:intergenic 55.0%
GTGCGTGAGCAGATGTCGAA+TGG + Chr5:6084836-6084855 MsG0580024530.01.T01:CDS 55.0%
TACGTGCATAATCGCGGCCT+CGG - Chr5:6084113-6084132 None:intergenic 55.0%
TCGTGATGGTCATCTCGTCC+AGG - Chr5:6088293-6088312 None:intergenic 55.0%
TGGTCATCACTCCTTGGCAG+AGG - Chr5:6087507-6087526 None:intergenic 55.0%
TGTAGTCTACAGCGGCTAGG+CGG - Chr5:6087007-6087026 None:intergenic 55.0%
! CCCCCTAAGTTTTGCACCTG+TGG - Chr5:6086573-6086592 None:intergenic 55.0%
! TGGGAGAGCGGTTAGCTGTA+TGG + Chr5:6087310-6087329 MsG0580024530.01.T01:intron 55.0%
!! TCCTTGGCAGAGGGCATTGT+GGG - Chr5:6087497-6087516 None:intergenic 55.0%
CCAGATGGAGAACGGAAGCG+AGG + Chr5:6086780-6086799 MsG0580024530.01.T01:CDS 60.0%
CCTCGCTTCCGTTCTCCATC+TGG - Chr5:6086783-6086802 None:intergenic 60.0%
CTGACGTGGCACCCTAAGTG+AGG - Chr5:6086511-6086530 None:intergenic 60.0%
GTAGTCTACAGCGGCTAGGC+GGG - Chr5:6087006-6087025 None:intergenic 60.0%
TGCCCCCGATAAGCTGACGT+TGG - Chr5:6084376-6084395 None:intergenic 60.0%
TTGGGGGCCAAAACTGCCAC+AGG + Chr5:6086554-6086573 MsG0580024530.01.T01:intron 60.0%
!! CGGGAAGGCATCAGATGGAC+TGG + Chr5:6088201-6088220 MsG0580024530.01.T01:CDS 60.0%
!! CTCCTTGGCAGAGGGCATTG+TGG - Chr5:6087498-6087517 None:intergenic 60.0%
!! TGACTCGGTCTACGCTGACG+TGG - Chr5:6086525-6086544 None:intergenic 60.0%
!! TGTGGCAGTTTTGGCCCCCA+AGG - Chr5:6086555-6086574 None:intergenic 60.0%
GCCCACAATGCCCTCTGCCA+AGG + Chr5:6087493-6087512 MsG0580024530.01.T01:intron 65.0%
GCGGCTAGGCGGGATGAGAA+TGG - Chr5:6086996-6087015 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
Chr5 gene 6083670 6088382 6083670 ID=MsG0580024530.01;Name=MsG0580024530.01
Chr5 mRNA 6083670 6088382 6083670 ID=MsG0580024530.01.T01;Parent=MsG0580024530.01;Name=MsG0580024530.01.T01;_AED=0.49;_eAED=0.49;_QI=0|0|0|1|1|1|9|0|521
Chr5 exon 6083670 6083930 6083670 ID=MsG0580024530.01.T01:exon:19177;Parent=MsG0580024530.01.T01
Chr5 exon 6084039 6084129 6084039 ID=MsG0580024530.01.T01:exon:19178;Parent=MsG0580024530.01.T01
Chr5 exon 6084831 6084907 6084831 ID=MsG0580024530.01.T01:exon:19179;Parent=MsG0580024530.01.T01
Chr5 exon 6085122 6085210 6085122 ID=MsG0580024530.01.T01:exon:19180;Parent=MsG0580024530.01.T01
Chr5 exon 6085301 6085490 6085301 ID=MsG0580024530.01.T01:exon:19181;Parent=MsG0580024530.01.T01
Chr5 exon 6085653 6085834 6085653 ID=MsG0580024530.01.T01:exon:19182;Parent=MsG0580024530.01.T01
Chr5 exon 6086122 6086224 6086122 ID=MsG0580024530.01.T01:exon:19183;Parent=MsG0580024530.01.T01
Chr5 exon 6086771 6087099 6086771 ID=MsG0580024530.01.T01:exon:19184;Parent=MsG0580024530.01.T01
Chr5 exon 6088139 6088382 6088139 ID=MsG0580024530.01.T01:exon:19185;Parent=MsG0580024530.01.T01
Chr5 CDS 6083670 6083930 6083670 ID=MsG0580024530.01.T01:cds;Parent=MsG0580024530.01.T01
Chr5 CDS 6084039 6084129 6084039 ID=MsG0580024530.01.T01:cds;Parent=MsG0580024530.01.T01
Chr5 CDS 6084831 6084907 6084831 ID=MsG0580024530.01.T01:cds;Parent=MsG0580024530.01.T01
Chr5 CDS 6085122 6085210 6085122 ID=MsG0580024530.01.T01:cds;Parent=MsG0580024530.01.T01
Chr5 CDS 6085301 6085490 6085301 ID=MsG0580024530.01.T01:cds;Parent=MsG0580024530.01.T01
Chr5 CDS 6085653 6085834 6085653 ID=MsG0580024530.01.T01:cds;Parent=MsG0580024530.01.T01
Chr5 CDS 6086122 6086224 6086122 ID=MsG0580024530.01.T01:cds;Parent=MsG0580024530.01.T01
Chr5 CDS 6086771 6087099 6086771 ID=MsG0580024530.01.T01:cds;Parent=MsG0580024530.01.T01
Chr5 CDS 6088139 6088382 6088139 ID=MsG0580024530.01.T01:cds;Parent=MsG0580024530.01.T01
Gene Sequence

>MsG0580024530.01.T01

ATGGGTGTGAGTATAGGTAAGGCTTGGAGGTTAGGAGTATTATCAACGAACCTAGCTTTGTTACCAAACAACAAAAAGAAACAACAACAACAGCAGCAACATGTTTGTTCTCGAAAGAACAACATGACGATCTCGTGGTCTTTGGTTTGTGGTTTGATGCTTTTTGTTTTGGGTTTAATTTCGCTTCTTACTGGTCACATGCTTTCTGATCTTGAATGGTATTCTCATCGATTGGTTCACCCTACTTTTTACTCTAGATTGGATGGGCATTACCGTGCACCAATTGATATATGGAAATCTAAATTGTCTAAATATTACTATGGATGTAGTGACCGAGGCCGCGATTATGCACCTGCTGTGCGTGAGCAGATGTCGAATGGCTACTTGCTTATTGCAGCTAGTGGAGGATTGAATCAACAAAGAACTGGGATAACAGATGCTGTAGTTGTTGCACGAATTCTTAATGCTACGCTGGTTGTACCTGAGTTGGATCATCATTCTTATTGGAAGGATGAGAGTGACTTTATCAATATTTTCGATGTTGATTGGTTCATTTCTTATCTCGCAAAAGACGTCACTATTGTCAAAAGAGTTCCTGATAAGGTGATGAGATCAATGGAAAAACCCCCATATACAATGCGTGTCCCAAGGAAATCAGAACCCGATTATTATCTTGATCAAGTTTTGCCAATTCTTTTGAGACGACAGGTTGTACAATTGACGAAGTTTGACTTTAGACTTGCGAATCACCTTGATGACGAGCTACAAAAACTACGATGCCGTGTTAATTTTCATGCTTTGAGATTCACAAAACCTATTCAAGAACTTGGTCAAACAATTGTTACGAGAATGCAGAAGATGGCTCACCGTTTCATAGCAGTCCATTTGAGATTTGAACCAGATATGCTAGCCTTTTCAGGTTGTTATTTTGGTGGGGGAGAGAAAGAAAGAAATGAGCTTGGTGAAATCAGAAAAAGGTGGACAACATTACCAGATTTGAGTCCAGATGGAGAACGGAAGCGAGGGAAATGTCCTCTTACTCCTCATGAAGTGGGTTTGATGTTACGCGCACTTGGTTTTACAAATGACACATACCTCTATGTTGCATCGGGAGAAATATATGGAGGGGACGAGACTATGCAGCCTCTCAAAGATCTTTTCCCTAACATCTATACAAAGGAGATGCTTGCTGATGAAGAGCTGAAACCTTTTCTTCCATTCTCATCCCGCCTAGCCGCTGTAGACTACATTGTTTGTGATGAAAGCGATGTATTTGTTACTAACAACAATGGCAACATGGCCAAGATTCTAGCTGGTCGAAGGAGATATATGGGTCACAAAAGAACAATTAGACCAAATGCAAAGAAGCTTAGCACACTTTTTGCGGGAAGGCATCAGATGGACTGGCATACCTTCGCCAGAAAGGTTAAGGCATGCCAAAGAGGATTCATGGGAGAGCCAGATGAGATGAGACCTGGACGAGATGACCATCACGAATTTCCCAGCTCTTGTGTTTGTGAGAGACCATATGTCGATGAAAAACTCGGTACAAAGATTGATACCTGA
Protein sequence

>MsG0580024530.01.T01

MGVSIGKAWRLGVLSTNLALLPNNKKKQQQQQQHVCSRKNNMTISWSLVCGLMLFVLGLISLLTGHMLSDLEWYSHRLVHPTFYSRLDGHYRAPIDIWKSKLSKYYYGCSDRGRDYAPAVREQMSNGYLLIAASGGLNQQRTGITDAVVVARILNATLVVPELDHHSYWKDESDFINIFDVDWFISYLAKDVTIVKRVPDKVMRSMEKPPYTMRVPRKSEPDYYLDQVLPILLRRQVVQLTKFDFRLANHLDDELQKLRCRVNFHALRFTKPIQELGQTIVTRMQKMAHRFIAVHLRFEPDMLAFSGCYFGGGEKERNELGEIRKRWTTLPDLSPDGERKRGKCPLTPHEVGLMLRALGFTNDTYLYVASGEIYGGDETMQPLKDLFPNIYTKEMLADEELKPFLPFSSRLAAVDYIVCDESDVFVTNNNGNMAKILAGRRRYMGHKRTIRPNAKKLSTLFAGRHQMDWHTFARKVKACQRGFMGEPDEMRPGRDDHHEFPSSCVCERPYVDEKLGTKIDT*