AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0580024589.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0580024589.01.T01 MTR_5g013515 78.571 126 21 2 34 153 1 126 2.62e-64 198
MsG0580024589.01.T01 MTR_5g013515 81.132 106 19 1 174 278 1 106 1.19e-57 181
MsG0580024589.01.T01 MTR_5g013530 68.462 130 34 2 150 278 7 130 5.03e-56 178
MsG0580024589.01.T01 MTR_5g013530 75.701 107 19 2 32 137 29 129 3.55e-49 160
MsG0580024589.01.T01 MTR_5g013530 75.229 109 20 2 30 137 5 107 3.56e-51 165
MsG0580024589.01.T01 MTR_5g013530 64.286 112 33 2 168 278 3 108 9.65e-43 143
MsG0580024589.01.T01 MTR_5g013520 74.528 106 20 2 33 137 1 100 1.50e-49 160
MsG0580024589.01.T01 MTR_5g013520 65.421 107 30 2 173 278 1 101 6.50e-42 141
MsG0580024589.01.T01 MTR_2g042900 45.455 121 37 3 43 137 108 225 1.03e-25 102
MsG0580024589.01.T01 MTR_2g042900 40.000 135 51 4 170 278 96 226 1.88e-22 93.6
MsG0580024589.01.T01 MTR_2g042900 36.424 151 37 4 43 137 108 255 6.99e-20 86.7
MsG0580024589.01.T01 MTR_2g042900 32.727 165 51 5 170 278 96 256 1.09e-16 78.2
MsG0580024589.01.T01 MTR_4g124960 33.333 123 57 3 26 148 82 179 5.10e-15 72.4
MsG0580024589.01.T01 MTR_4g124960 38.235 102 40 3 177 278 91 169 2.27e-13 67.8
MsG0580024589.01.T01 MTR_4g124960 35.714 112 47 3 26 137 82 168 5.15e-15 71.6
MsG0580024589.01.T01 MTR_4g124960 38.235 102 40 3 177 278 91 169 1.65e-13 67.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0580024589.01.T01 AT1G19180 45.192 104 47 4 40 137 53 152 2.38e-17 78.6
MsG0580024589.01.T01 AT1G19180 40.367 109 55 4 176 278 49 153 8.78e-14 68.6
MsG0580024589.01.T01 AT1G19180 45.192 104 47 4 40 137 119 218 1.13e-16 77.8
MsG0580024589.01.T01 AT1G19180 39.450 109 56 4 176 278 115 219 2.98e-13 68.6
MsG0580024589.01.T01 AT1G19180 45.192 104 47 4 40 137 119 218 1.13e-16 77.8
MsG0580024589.01.T01 AT1G19180 39.450 109 56 4 176 278 115 219 2.98e-13 68.6
MsG0580024589.01.T01 AT1G74950 38.532 109 56 2 40 137 112 220 1.28e-16 77.0
MsG0580024589.01.T01 AT1G74950 39.655 116 55 4 176 278 108 221 2.80e-15 73.6
MsG0580024589.01.T01 AT1G74950 38.532 109 56 2 40 137 112 220 1.81e-16 77.4
MsG0580024589.01.T01 AT1G74950 39.655 116 55 4 176 278 108 221 3.92e-15 73.6
MsG0580024589.01.T01 AT5G20900 39.655 116 60 5 173 278 41 156 1.14e-11 62.8

Find 47 sgRNAs with CRISPR-Local

Find 389 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCATCTACACCTGTTATTTA+TGG 0.119392 5:+6637063 MsG0580024589.01.T01:CDS
TCTACAAGAGGTTTCAAATT+TGG 0.130518 5:+6636658 MsG0580024589.01.T01:CDS
TCATCCTCACCTGTTATTTA+TGG 0.150258 5:+6631724 MsG0580024589.01.T01:CDS
CTACAAGAGGTTTCAAATTT+GGG 0.272831 5:+6636659 MsG0580024589.01.T01:CDS
GGCTTCACTTCATCGGTTCT+TGG 0.289096 5:+6638220 MsG0580024589.01.T01:CDS
AGCTTCACTTCATCGGTTCT+TGG 0.292747 5:+6631877 MsG0580024589.01.T01:CDS
ATTGTCATTTGGGCACTTCT+AGG 0.305926 5:-6636856 None:intergenic
TTTCAAATTTAGGAAATTCC+AGG 0.358166 5:+6631379 None:intergenic
TTGAGAGTTAGTAGTTCCTT+TGG 0.375053 5:-6631614 None:intergenic
GGGGTGACTCTGAGCAAATC+TGG 0.380764 5:-6636998 None:intergenic
TTTCAAATTTGGGACATTCC+AGG 0.386089 5:+6636669 MsG0580024589.01.T01:CDS
AGTGAAGCTTTCCTAGTCAT+TGG 0.425048 5:-6631863 None:intergenic
TCGAGAGGTAGTAGTTCCTT+TGG 0.433772 5:-6636953 None:intergenic
GGAGCTTGTTGAAAATTCAT+AGG 0.439447 5:-6636626 None:intergenic
ATTCAGATTTATCAATTACT+AGG 0.446451 5:+6638195 MsG0580024589.01.T01:intron
GAATTTCTAGCAAGAAATGA+TGG 0.446507 5:-6631679 None:intergenic
CCATAAATAACAGGTGTAGA+TGG 0.461679 5:-6637063 None:intergenic
ATTGTCATTTGTGCACATCT+AGG 0.463250 5:-6631517 None:intergenic
TTCATCGGTTCTTGGAGAAA+AGG 0.463618 5:+6631885 MsG0580024589.01.T01:CDS
TTCATCGGTTCTTGGAAAGA+AGG 0.486928 5:+6638228 MsG0580024589.01.T01:CDS
AAACCTCTTGTAGAAAGAGA+TGG 0.490315 5:-6636649 None:intergenic
TGATACTTGAAGAGAATTGT+TGG 0.494345 5:-6631704 None:intergenic
AGAGTTAGTAGTTCCTTTGG+AGG 0.509053 5:-6631611 None:intergenic
TCCCCATCTCTTTCTACAAG+AGG 0.509375 5:+6636646 MsG0580024589.01.T01:CDS
AGATTTATCAATTACTAGGA+AGG 0.513206 5:+6638199 MsG0580024589.01.T01:intron
AACCTCTTGTAGAAAGAGAT+GGG 0.514919 5:-6636648 None:intergenic
CTAGGAAGGCTTCACTTCAT+CGG 0.521487 5:+6638213 MsG0580024589.01.T01:CDS
CTAGGAAAGCTTCACTTCAT+CGG 0.529148 5:+6631870 MsG0580024589.01.T01:CDS
AATGAAGACTAATATTATCA+AGG 0.534533 5:+6636828 MsG0580024589.01.T01:CDS
TGGTATTTGAGCTGAATTGT+TGG 0.539227 5:-6637043 None:intergenic
TCGGTTCTTGGAAAGAAGGA+TGG 0.543639 5:+6638232 MsG0580024589.01.T01:CDS
TGAAAGCATAGTTATTGTTG+TGG 0.546555 5:-6631639 None:intergenic
AATGAAGGCTAATATTAAGA+AGG 0.546955 5:+6631489 MsG0580024589.01.T01:CDS
AAAATTTCTAGCAAGAAATG+AGG 0.558270 5:-6637019 None:intergenic
GTAGCAAAAGAACATGTACC+TGG 0.559938 5:-6631397 None:intergenic
TCTTGGAGAAAAGGAAGGAT+AGG 0.567398 5:+6631894 MsG0580024589.01.T01:CDS
AAATTTCTAGCAAGAAATGA+GGG 0.575092 5:-6637018 None:intergenic
TCTTGGAAAGAAGGATGGAT+AGG 0.575095 5:+6638237 MsG0580024589.01.T01:CDS
TCGGTTCTTGGAGAAAAGGA+AGG 0.585705 5:+6631889 MsG0580024589.01.T01:CDS
TGGAAGCGTAGTTATTGCTG+TGG 0.608871 5:-6636978 None:intergenic
TTTACCATAAATAACAGGTG+AGG 0.612964 5:-6631728 None:intergenic
GTTATTGCTGTGGTTTCGAG+AGG 0.614841 5:-6636968 None:intergenic
ATACAGATTTACCAATGACT+AGG 0.627962 5:+6631852 MsG0580024589.01.T01:intron
AATTTCTAGCAAGAAATGAT+GGG 0.637681 5:-6631678 None:intergenic
ACCTCTTGTAGAAAGAGATG+GGG 0.650821 5:-6636647 None:intergenic
TTCTAGCAAGAAATGATGGG+TGG 0.652275 5:-6631675 None:intergenic
AATTTCTAGCAAGAAATGAG+GGG 0.713360 5:-6637017 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATCTGAATAAATATTAAA+AGG - Chr5:6638185-6638204 None:intergenic 10.0%
!! AACAAAAAAACAAAAAAAAA+AGG + Chr5:6633480-6633499 MsG0580024589.01.T01:intron 10.0%
!! GGTAAAAAAATAATAATAAT+TGG + Chr5:6631745-6631764 MsG0580024589.01.T01:intron 10.0%
!! TATGGTAAAAAAAAAAAAAT+CGG + Chr5:6637081-6637100 MsG0580024589.01.T01:intron 10.0%
!!! AAAAAAATCTAATTTTTTTC+GGG + Chr5:6632274-6632293 MsG0580024589.01.T01:intron 10.0%
!!! AAAATATAAATTTTCAAGTT+CGG + Chr5:6635730-6635749 MsG0580024589.01.T01:intron 10.0%
!!! AATATGAATTTTTATGTTTT+TGG - Chr5:6632238-6632257 None:intergenic 10.0%
!!! AATCTAAAATATTATCTTTA+TGG + Chr5:6636346-6636365 MsG0580024589.01.T01:intron 10.0%
!!! ACATATAAATTTTTAAGTTT+AGG - Chr5:6635287-6635306 None:intergenic 10.0%
!!! ATATAAATTTTTAAGTTTAG+GGG - Chr5:6635285-6635304 None:intergenic 10.0%
!!! ATTTATTTTTTTTTTAGTAG+GGG - Chr5:6637877-6637896 None:intergenic 10.0%
!!! CATATAAATTTTTAAGTTTA+GGG - Chr5:6635286-6635305 None:intergenic 10.0%
!!! TATTTTTTTTTCTAAATACA+AGG - Chr5:6637274-6637293 None:intergenic 10.0%
!!! TTAAATTTTAAATATGATTG+AGG + Chr5:6637693-6637712 MsG0580024589.01.T01:intron 10.0%
!!! TTAGAAAAAAAAATAGATTT+TGG + Chr5:6637279-6637298 MsG0580024589.01.T01:intron 10.0%
!! AATTTGAATTTGTATAACAA+TGG - Chr5:6634772-6634791 None:intergenic 15.0%
!! ACAAAAATATCAGTAAAATA+TGG - Chr5:6632916-6632935 None:intergenic 15.0%
!! ATTAAAGACAAAAAAACTAA+CGG + Chr5:6635335-6635354 MsG0580024589.01.T01:intron 15.0%
!! ATTATCAAATAAAAGTTCAT+CGG - Chr5:6632504-6632523 None:intergenic 15.0%
!! CTATATATATATATATGAAC+TGG + Chr5:6633110-6633129 MsG0580024589.01.T01:intron 15.0%
!! TACACTTCTTAATTAATTAT+GGG - Chr5:6633242-6633261 None:intergenic 15.0%
!! TACAGTATAAGAAAATAAAT+TGG + Chr5:6634679-6634698 MsG0580024589.01.T01:intron 15.0%
!! TATATGTTCTTAATTATAGA+CGG + Chr5:6636303-6636322 MsG0580024589.01.T01:intron 15.0%
!! TTACACTTCTTAATTAATTA+TGG - Chr5:6633243-6633262 None:intergenic 15.0%
!! TTTAAATAAGTCATAAGTTA+TGG + Chr5:6635570-6635589 MsG0580024589.01.T01:intron 15.0%
!! TTTAAATATGAGATGTATTA+TGG - Chr5:6637916-6637935 None:intergenic 15.0%
!!! AAATATAAATTTTCAAGTTC+GGG + Chr5:6635731-6635750 MsG0580024589.01.T01:intron 15.0%
!!! AAATGACAATTTTTTATGAT+GGG + Chr5:6631530-6631549 MsG0580024589.01.T01:CDS 15.0%
!!! AAGTATATATGTTTAGTTTA+AGG + Chr5:6634220-6634239 MsG0580024589.01.T01:intron 15.0%
!!! AAGTTTTTCATCATTTATTT+TGG + Chr5:6632066-6632085 MsG0580024589.01.T01:intron 15.0%
!!! AATTTGACAAAAATTTTAGA+AGG - Chr5:6632035-6632054 None:intergenic 15.0%
!!! ATACAATTTTACTTAATCAA+GGG - Chr5:6637968-6637987 None:intergenic 15.0%
!!! ATCATAAAAAATTGTCATTT+GGG - Chr5:6631530-6631549 None:intergenic 15.0%
!!! ATTAATTCCTATTTCATTTT+TGG - Chr5:6632460-6632479 None:intergenic 15.0%
!!! ATTTTTTTACCATAAATAAC+AGG - Chr5:6631736-6631755 None:intergenic 15.0%
!!! CTTTTTTTTTTTTTTTTTGC+TGG + Chr5:6632588-6632607 MsG0580024589.01.T01:intron 15.0%
!!! TATAAATTTTTAAGTTTAGG+GGG - Chr5:6635284-6635303 None:intergenic 15.0%
!!! TATACAATTTTACTTAATCA+AGG - Chr5:6637969-6637988 None:intergenic 15.0%
!!! TATTTGATAATTGATAGATT+AGG + Chr5:6632513-6632532 MsG0580024589.01.T01:intron 15.0%
!!! TGTTTTATAATATTCAAAAG+TGG - Chr5:6633786-6633805 None:intergenic 15.0%
!!! TTAAATGAGATAATTTTGAA+TGG - Chr5:6634333-6634352 None:intergenic 15.0%
!!! TTAATTCCTATTTCATTTTT+GGG - Chr5:6632459-6632478 None:intergenic 15.0%
!!! TTTAGTATGGTTTTAAATTT+TGG + Chr5:6637512-6637531 MsG0580024589.01.T01:intron 15.0%
!!! TTTATTTTTTTTTTAGTAGG+GGG - Chr5:6637876-6637895 None:intergenic 15.0%
!!! TTTTGGGTTTAATATATTTT+TGG - Chr5:6632443-6632462 None:intergenic 15.0%
!!! TTTTTTTATGTGAGAATAAT+AGG - Chr5:6636011-6636030 None:intergenic 15.0%
!!! TTTTTTTTACCATAAATAAC+AGG - Chr5:6637075-6637094 None:intergenic 15.0%
!! AAAAAAAATCGGATATCTAA+TGG + Chr5:6637092-6637111 MsG0580024589.01.T01:intron 20.0%
!! AAAAAAATCGGATATCTAAT+GGG + Chr5:6637093-6637112 MsG0580024589.01.T01:intron 20.0%
!! AAAAATGAAAAACGAAAAAG+AGG + Chr5:6633564-6633583 MsG0580024589.01.T01:intron 20.0%
!! AAAATGAAAAACGAAAAAGA+GGG + Chr5:6633565-6633584 MsG0580024589.01.T01:intron 20.0%
!! AAATAAATTGGTGTAAATTC+TGG + Chr5:6634691-6634710 MsG0580024589.01.T01:intron 20.0%
!! AACAAAAAAAAAAGGTAAGA+TGG + Chr5:6633488-6633507 MsG0580024589.01.T01:intron 20.0%
!! AATGAAGACTAATATTATCA+AGG + Chr5:6636828-6636847 MsG0580024589.01.T01:CDS 20.0%
!! AATGATACATAATTATGTGT+CGG + Chr5:6634126-6634145 MsG0580024589.01.T01:intron 20.0%
!! ACGAAATAAAAAATGATCTT+TGG + Chr5:6637403-6637422 MsG0580024589.01.T01:intron 20.0%
!! AGATTTGAAGATTTGAATTT+GGG + Chr5:6637745-6637764 MsG0580024589.01.T01:intron 20.0%
!! ATTAAACCCAAAAATGAAAT+AGG + Chr5:6632450-6632469 MsG0580024589.01.T01:intron 20.0%
!! ATTCAGATTTATCAATTACT+AGG + Chr5:6638195-6638214 MsG0580024589.01.T01:intron 20.0%
!! CAAAAATCGTAATAGAAAAA+AGG - Chr5:6632889-6632908 None:intergenic 20.0%
!! CATCATAAAAAATTGTCATT+TGG - Chr5:6631531-6631550 None:intergenic 20.0%
!! CTTTAATATCATTTGAATCA+AGG - Chr5:6635322-6635341 None:intergenic 20.0%
!! GAGTTGAATAAAAGTAATTA+AGG - Chr5:6632093-6632112 None:intergenic 20.0%
!! TAGATTTGAAGATTTGAATT+TGG + Chr5:6637744-6637763 MsG0580024589.01.T01:intron 20.0%
!! TAGTAGCTAAAAAATGTTAA+TGG - Chr5:6636729-6636748 None:intergenic 20.0%
!! TTAAATGAGATGAATTTGAA+TGG - Chr5:6636184-6636203 None:intergenic 20.0%
!! TTAGATTCATTCATTAAATG+AGG - Chr5:6636333-6636352 None:intergenic 20.0%
!! TTGAATTATTATGAAAGAGT+TGG - Chr5:6636533-6636552 None:intergenic 20.0%
!!! AAATACAATTTTGTTGACAA+AGG - Chr5:6634658-6634677 None:intergenic 20.0%
!!! AATATAAATTTTCAAGTTCG+GGG + Chr5:6635732-6635751 MsG0580024589.01.T01:intron 20.0%
!!! AATGACATTTTTTCAGAAAT+AGG - Chr5:6632321-6632340 None:intergenic 20.0%
!!! ACGGTTATCTTTAATTTTTA+AGG + Chr5:6635354-6635373 MsG0580024589.01.T01:intron 20.0%
!!! ATAGTACACTTTTTTATGAA+AGG - Chr5:6636152-6636171 None:intergenic 20.0%
!!! ATGAAGCAAGAATTATTTTT+TGG - Chr5:6633749-6633768 None:intergenic 20.0%
!!! ATTCATTAATTGGCTTATTA+AGG - Chr5:6632995-6633014 None:intergenic 20.0%
!!! CAAAAACTTGTTTTTATGAA+AGG - Chr5:6636441-6636460 None:intergenic 20.0%
!!! CAAATGACAATTTTTTATGA+TGG + Chr5:6631529-6631548 MsG0580024589.01.T01:CDS 20.0%
!!! CTTTAATATCTTTTGAGTTA+AGG + Chr5:6635698-6635717 MsG0580024589.01.T01:intron 20.0%
!!! GAAAAAAAAAACAGCATTTT+TGG + Chr5:6633880-6633899 MsG0580024589.01.T01:intron 20.0%
!!! TAATTCTGCATTATTTTTAG+AGG - Chr5:6635397-6635416 None:intergenic 20.0%
!!! TCTTTTTATCAATAAATCGT+TGG - Chr5:6634555-6634574 None:intergenic 20.0%
!!! TGAAATAGATTTTCATTTTG+AGG + Chr5:6637312-6637331 MsG0580024589.01.T01:intron 20.0%
!!! TGAATATTTATTTTCCATGT+AGG + Chr5:6633688-6633707 MsG0580024589.01.T01:intron 20.0%
!!! TTAAAAAAATCTAAAGCTGT+TGG + Chr5:6637188-6637207 MsG0580024589.01.T01:intron 20.0%
!!! TTAATTAAGAAGTGTAATTC+TGG + Chr5:6633246-6633265 MsG0580024589.01.T01:intron 20.0%
!!! TTATTTTTACAGTGTAATGA+AGG + Chr5:6631474-6631493 MsG0580024589.01.T01:CDS 20.0%
! AAAAAGGTTATCAATTTGAC+AGG - Chr5:6632873-6632892 None:intergenic 25.0%
! AAAGTTGTAAAAACTGTCTA+CGG + Chr5:6634828-6634847 MsG0580024589.01.T01:intron 25.0%
! AACTACCACAATTAAAACTA+CGG + Chr5:6638128-6638147 MsG0580024589.01.T01:intron 25.0%
! AATGAAGGCTAATATTAAGA+AGG + Chr5:6631489-6631508 MsG0580024589.01.T01:CDS 25.0%
! ACAAAAGAATGAACATATTG+AGG - Chr5:6633328-6633347 None:intergenic 25.0%
! AGATTTATCAATTACTAGGA+AGG + Chr5:6638199-6638218 MsG0580024589.01.T01:intron 25.0%
! AGCAAAAATCGTAAGAAAAA+TGG + Chr5:6634730-6634749 MsG0580024589.01.T01:intron 25.0%
! ATCATTTAATTCTGATCTAG+GGG + Chr5:6635973-6635992 MsG0580024589.01.T01:intron 25.0%
! ATTATCTGACTTTCAATCAA+TGG - Chr5:6632758-6632777 None:intergenic 25.0%
! ATTATTCAATCTATCCTACA+TGG - Chr5:6633705-6633724 None:intergenic 25.0%
! ATTGAAATCAACAATTCCTT+TGG + Chr5:6632776-6632795 MsG0580024589.01.T01:intron 25.0%
! ATTGCTCTTTCATTCTTAAA+GGG - Chr5:6635645-6635664 None:intergenic 25.0%
! CAATTAATGAATTCATGTCA+TGG + Chr5:6633003-6633022 MsG0580024589.01.T01:intron 25.0%
! CATGACATGAATTCATTAAT+TGG - Chr5:6633005-6633024 None:intergenic 25.0%
! CATGATTCATGTTTATAACA+TGG + Chr5:6636760-6636779 MsG0580024589.01.T01:intron 25.0%
! CCTACTAAAAAAAATGTTGA+AGG - Chr5:6631439-6631458 None:intergenic 25.0%
! CTGTAAAAATGCATATCATT+CGG + Chr5:6636230-6636249 MsG0580024589.01.T01:intron 25.0%
! GATCATTTAATTCTGATCTA+GGG + Chr5:6635972-6635991 MsG0580024589.01.T01:intron 25.0%
! GATCTTACCTAAAATATTAG+GGG - Chr5:6638018-6638037 None:intergenic 25.0%
! GATTTGAAGATTTGAATTTG+GGG + Chr5:6637746-6637765 MsG0580024589.01.T01:intron 25.0%
! GCTAGAATTAATTATTCATG+AGG + Chr5:6635502-6635521 MsG0580024589.01.T01:intron 25.0%
! GGATCTTACCTAAAATATTA+GGG - Chr5:6638019-6638038 None:intergenic 25.0%
! GTAAAGGAAATCAGAAAATA+GGG + Chr5:6633660-6633679 MsG0580024589.01.T01:intron 25.0%
! TAATTGGATATCTATTTGAG+TGG + Chr5:6631761-6631780 MsG0580024589.01.T01:intron 25.0%
! TACAATCAAACAGTAATTAG+TGG - Chr5:6631961-6631980 None:intergenic 25.0%
! TGACGAAACTTATAATTTCA+GGG - Chr5:6635108-6635127 None:intergenic 25.0%
! TGACTAACAGAAAAATTTGA+CGG + Chr5:6635809-6635828 MsG0580024589.01.T01:intron 25.0%
! TGTAAAGGAAATCAGAAAAT+AGG + Chr5:6633659-6633678 MsG0580024589.01.T01:intron 25.0%
! TTGACGAAACTTATAATTTC+AGG - Chr5:6635109-6635128 None:intergenic 25.0%
! TTGTAAAAATGTACGAGTTA+TGG + Chr5:6634425-6634444 MsG0580024589.01.T01:intron 25.0%
!! AGATTCAATACTTTTGCAAA+AGG - Chr5:6632630-6632649 None:intergenic 25.0%
!! ATTAACGTTGTGCAATTTTA+GGG - Chr5:6635167-6635186 None:intergenic 25.0%
!! ATTTCACAAAGATGTTTTTC+AGG - Chr5:6633964-6633983 None:intergenic 25.0%
!! CTTTTAAACAACGAGTAAAT+AGG - Chr5:6635938-6635957 None:intergenic 25.0%
!! GTTAATTCTGAAAACTTAAG+AGG + Chr5:6632540-6632559 MsG0580024589.01.T01:intron 25.0%
!! TATGAGTTGACTAAAAAGTA+AGG + Chr5:6632360-6632379 MsG0580024589.01.T01:intron 25.0%
!! TCTTATTTGTTTGAAAGATC+TGG - Chr5:6631928-6631947 None:intergenic 25.0%
!! TGACGAAACTTACAATTTTA+GGG + Chr5:6635904-6635923 MsG0580024589.01.T01:intron 25.0%
!! TTGACGAAACTTACAATTTT+AGG + Chr5:6635903-6635922 MsG0580024589.01.T01:intron 25.0%
!! TTTCACAAAGATGTTTTTCA+GGG - Chr5:6633963-6633982 None:intergenic 25.0%
!! TTTTACAACTTTTGCTGATA+GGG - Chr5:6634820-6634839 None:intergenic 25.0%
!! TTTTTACAACTTTTGCTGAT+AGG - Chr5:6634821-6634840 None:intergenic 25.0%
!!! AAAAAAAACAGCATTTTTGG+AGG + Chr5:6633883-6633902 MsG0580024589.01.T01:intron 25.0%
!!! AAAAAAACAGCATTTTTGGA+GGG + Chr5:6633884-6633903 MsG0580024589.01.T01:intron 25.0%
!!! AAAATTTCTAGCAAGAAATG+AGG - Chr5:6637022-6637041 None:intergenic 25.0%
!!! AAATTTCTAGCAAGAAATGA+GGG - Chr5:6637021-6637040 None:intergenic 25.0%
!!! AATTTCTAGCAAGAAATGAT+GGG - Chr5:6631681-6631700 None:intergenic 25.0%
!!! ATATAAATTTTCAAGTTCGG+GGG + Chr5:6635733-6635752 MsG0580024589.01.T01:intron 25.0%
!!! ATTGACGTTTTGTTAATTTC+AGG + Chr5:6635872-6635891 MsG0580024589.01.T01:intron 25.0%
!!! CCTTCAACATTTTTTTTAGT+AGG + Chr5:6631436-6631455 MsG0580024589.01.T01:CDS 25.0%
!!! CTGTAGGTTCATTTTAATTT+TGG + Chr5:6634621-6634640 MsG0580024589.01.T01:intron 25.0%
!!! CTTGATTTTGATTTGTGTAA+TGG + Chr5:6631789-6631808 MsG0580024589.01.T01:intron 25.0%
!!! GAGACTTGACTATTTTTTTT+TGG + Chr5:6634498-6634517 MsG0580024589.01.T01:intron 25.0%
!!! TAAAACCGTAGTTTTAATTG+TGG - Chr5:6638136-6638155 None:intergenic 25.0%
!!! TGACGTTTTGTTAATTTCAT+GGG - Chr5:6635137-6635156 None:intergenic 25.0%
!!! TGTTTTTTTTTTCGTGTGTA+AGG - Chr5:6633873-6633892 None:intergenic 25.0%
!!! TTGACGTTTTGTTAATTTCA+GGG + Chr5:6635873-6635892 MsG0580024589.01.T01:intron 25.0%
!!! TTGACGTTTTGTTAATTTCA+TGG - Chr5:6635892-6635873 None:intergenic 25.0%
AAAAAAAAAGAGGTCTCCTA+CGG + Chr5:6636054-6636073 MsG0580024589.01.T01:intron 30.0%
AAAAATAGTCAAGTCTCCTA+TGG - Chr5:6634495-6634514 None:intergenic 30.0%
AAAAGCAATTAATTTCCGTG+GGG + Chr5:6633930-6633949 MsG0580024589.01.T01:intron 30.0%
AAGTTAAAGAAACACAGAAC+TGG - Chr5:6633078-6633097 None:intergenic 30.0%
AATAAATAGCATAAGACCAG+TGG - Chr5:6638043-6638062 None:intergenic 30.0%
ACGAAACTTATAATTTCAGG+GGG - Chr5:6635106-6635125 None:intergenic 30.0%
ATACAGATTTACCAATGACT+AGG + Chr5:6631852-6631871 MsG0580024589.01.T01:intron 30.0%
ATGAACTGGATTGATCATTA+GGG + Chr5:6633124-6633143 MsG0580024589.01.T01:intron 30.0%
ATTTCGGAACAAGAAGTAAA+GGG - Chr5:6632841-6632860 None:intergenic 30.0%
CAAAAGCAATTAATTTCCGT+GGG + Chr5:6633929-6633948 MsG0580024589.01.T01:intron 30.0%
CATTGCTCTTTCATTCTTAA+AGG - Chr5:6635646-6635665 None:intergenic 30.0%
CGATCATTTAATTCTGATCT+AGG + Chr5:6635971-6635990 MsG0580024589.01.T01:intron 30.0%
CGGATCTTACCTAAAATATT+AGG - Chr5:6638020-6638039 None:intergenic 30.0%
CTACAAGAGGTTTCAAATTT+GGG + Chr5:6636659-6636678 MsG0580024589.01.T01:CDS 30.0%
GACGAAACTTATAATTTCAG+GGG - Chr5:6635107-6635126 None:intergenic 30.0%
GATATAAAGCTATGTGTTGA+TGG - Chr5:6633365-6633384 None:intergenic 30.0%
GCTAAATAAATACGAGTCAT+TGG + Chr5:6634523-6634542 MsG0580024589.01.T01:intron 30.0%
GTGTTGTCTAAAGAGTAAAT+AGG + Chr5:6635073-6635092 MsG0580024589.01.T01:intron 30.0%
TAACAGAAAAAGTTGACGAA+GGG - Chr5:6635199-6635218 None:intergenic 30.0%
TAACAGAAAAATTTGACGGA+GGG + Chr5:6635813-6635832 MsG0580024589.01.T01:intron 30.0%
TATGAACTGGATTGATCATT+AGG + Chr5:6633123-6633142 MsG0580024589.01.T01:intron 30.0%
TATTTCGGAACAAGAAGTAA+AGG - Chr5:6632842-6632861 None:intergenic 30.0%
TCTACAAGAGGTTTCAAATT+TGG + Chr5:6636658-6636677 MsG0580024589.01.T01:CDS 30.0%
TGAAAAAGTCAACGATATCA+TGG + Chr5:6636921-6636940 MsG0580024589.01.T01:CDS 30.0%
TGAAAAAGTCAAGGACATTA+TGG + Chr5:6631582-6631601 MsG0580024589.01.T01:CDS 30.0%
TGAACAATCAAATGGCATAA+CGG + Chr5:6635598-6635617 MsG0580024589.01.T01:intron 30.0%
TGATACTTGAAGAGAATTGT+TGG - Chr5:6631707-6631726 None:intergenic 30.0%
TGATTAACGTTGTGCAATTT+CGG + Chr5:6635843-6635862 MsG0580024589.01.T01:intron 30.0%
TGGAGAATTGAACAATCAAA+TGG + Chr5:6635590-6635609 MsG0580024589.01.T01:intron 30.0%
TTATACTACTTCCTTCATGA+TGG - Chr5:6633531-6633550 None:intergenic 30.0%
TTGCTCTTTCATTCTTAAAG+GGG - Chr5:6635644-6635663 None:intergenic 30.0%
TTTACCATAAATAACAGGTG+AGG - Chr5:6631731-6631750 None:intergenic 30.0%
! ACGAAACTTACAATTTTAGG+GGG + Chr5:6635906-6635925 MsG0580024589.01.T01:intron 30.0%
! ATTGGCTTATTAAGGTTAGT+TGG - Chr5:6632987-6633006 None:intergenic 30.0%
! CTCTCACGAGTAATTTTTAT+GGG + Chr5:6634252-6634271 MsG0580024589.01.T01:intron 30.0%
! GACGAAACTTACAATTTTAG+GGG + Chr5:6635905-6635924 MsG0580024589.01.T01:intron 30.0%
! GATTAACGTTGTGCAATTTT+AGG - Chr5:6635168-6635187 None:intergenic 30.0%
! TACCTTTTCCATTCATTGAT+TGG - Chr5:6634974-6634993 None:intergenic 30.0%
! TAGCTTACTTTGTTGTGAAT+TGG + Chr5:6635537-6635556 MsG0580024589.01.T01:intron 30.0%
! TCTCTCACGAGTAATTTTTA+TGG + Chr5:6634251-6634270 MsG0580024589.01.T01:intron 30.0%
! TGAAAGCATAGTTATTGTTG+TGG - Chr5:6631642-6631661 None:intergenic 30.0%
! TTAAATTTTGGATGCAGTTG+CGG + Chr5:6637524-6637543 MsG0580024589.01.T01:intron 30.0%
! TTAACGTTGTGCAATTTTAG+GGG - Chr5:6635166-6635185 None:intergenic 30.0%
! TTCAATACTTTTGCAAAAGG+AGG - Chr5:6632627-6632646 None:intergenic 30.0%
! TTGGCTTATTAAGGTTAGTT+GGG - Chr5:6632986-6633005 None:intergenic 30.0%
! TTTCTCTATTTTGTAGGACT+TGG + Chr5:6633149-6633168 MsG0580024589.01.T01:intron 30.0%
!! AAAAAACAGCATTTTTGGAG+GGG + Chr5:6633885-6633904 MsG0580024589.01.T01:intron 30.0%
!! AAAGAGAAAAGCATTGCAAT+TGG + Chr5:6634570-6634589 MsG0580024589.01.T01:intron 30.0%
!! AATTTCTAGCAAGAAATGAG+GGG - Chr5:6637020-6637039 None:intergenic 30.0%
!! ACGTTTTGTTAATTTCATGG+GGG - Chr5:6635135-6635154 None:intergenic 30.0%
!! GAATTTCTAGCAAGAAATGA+TGG - Chr5:6631682-6631701 None:intergenic 30.0%
!! GACGTTTTGTTAATTTCATG+GGG - Chr5:6635136-6635155 None:intergenic 30.0%
!! GGAAATTAATTGCTTTTGCA+AGG - Chr5:6633927-6633946 None:intergenic 30.0%
!! TAAATTCTGGAATCAATCAC+AGG + Chr5:6634704-6634723 MsG0580024589.01.T01:intron 30.0%
!! TGACGTTTTGTTAATTTCAG+GGG + Chr5:6635874-6635893 MsG0580024589.01.T01:intron 30.0%
!! TTATTATGAAAGAGTTGGTG+AGG - Chr5:6636528-6636547 None:intergenic 30.0%
!! TTCACAAAGATGTTTTTCAG+GGG - Chr5:6633962-6633981 None:intergenic 30.0%
!! TTTGTGTAACGGTTTTAGTA+TGG + Chr5:6637499-6637518 MsG0580024589.01.T01:intron 30.0%
!!! ATGTTGCTTTGTGCTATTTT+TGG - Chr5:6636582-6636601 None:intergenic 30.0%
!!! TATAAATTTTCAAGTTCGGG+GGG + Chr5:6635734-6635753 MsG0580024589.01.T01:intron 30.0%
AAACATACGCATGAGTTATG+CGG - Chr5:6636117-6636136 None:intergenic 35.0%
AAACCTCTTGTAGAAAGAGA+TGG - Chr5:6636652-6636671 None:intergenic 35.0%
AAACTGCCCAAATATTGAGA+GGG + Chr5:6637464-6637483 MsG0580024589.01.T01:intron 35.0%
AACAGAAAAAGTTGACGAAG+GGG - Chr5:6635198-6635217 None:intergenic 35.0%
AACAGAAAAATTTGACGGAG+GGG + Chr5:6635814-6635833 MsG0580024589.01.T01:intron 35.0%
AACCTCTTGTAGAAAGAGAT+GGG - Chr5:6636651-6636670 None:intergenic 35.0%
AATATGATTGAGGTTGCTTG+AGG + Chr5:6637703-6637722 MsG0580024589.01.T01:intron 35.0%
ACATAAGTGCAAAACTTCAG+GGG - Chr5:6635784-6635765 None:intergenic 35.0%
ATGAAAAACGAAAAAGAGGG+AGG + Chr5:6633568-6633587 MsG0580024589.01.T01:intron 35.0%
ATTAACGTTGTGCAATTTCG+GGG + Chr5:6635845-6635864 MsG0580024589.01.T01:intron 35.0%
ATTATAGACCCTCTCTCATT+TGG + Chr5:6637940-6637959 MsG0580024589.01.T01:intron 35.0%
ATTTGTTTGAAAGATCTGGC+TGG - Chr5:6631924-6631943 None:intergenic 35.0%
CACATAAGTGCAAAACTTCA+GGG + Chr5:6635764-6635783 MsG0580024589.01.T01:intron 35.0%
CACATAAGTGCAAAACTTCA+GGG - Chr5:6635783-6635764 None:intergenic 35.0%
CCATAAATAACAGGTGTAGA+TGG - Chr5:6637066-6637085 None:intergenic 35.0%
CGAAACTTATAATTTCAGGG+GGG - Chr5:6635105-6635124 None:intergenic 35.0%
CTAAATGTTCGTGAATGTTG+TGG + Chr5:6633200-6633219 MsG0580024589.01.T01:intron 35.0%
CTAACAGAAAAAGTTGACGA+AGG - Chr5:6635200-6635219 None:intergenic 35.0%
CTAACAGAAAAATTTGACGG+AGG + Chr5:6635812-6635831 MsG0580024589.01.T01:intron 35.0%
GAGTTATGGAGTACAAAACA+AGG + Chr5:6634439-6634458 MsG0580024589.01.T01:intron 35.0%
GAGTTCTTATTACACACTGT+AGG + Chr5:6634605-6634624 MsG0580024589.01.T01:intron 35.0%
GATTAACGTTGTGCAATTTC+GGG + Chr5:6635844-6635863 MsG0580024589.01.T01:intron 35.0%
GCAAAAGCAATTAATTTCCG+TGG + Chr5:6633928-6633947 MsG0580024589.01.T01:intron 35.0%
GTACAAAACAAAACACGCAT+AGG + Chr5:6636389-6636408 MsG0580024589.01.T01:intron 35.0%
GTTGGGTTACTTGTTTGATA+TGG - Chr5:6632969-6632988 None:intergenic 35.0%
TAAACTGCCCAAATATTGAG+AGG + Chr5:6637463-6637482 MsG0580024589.01.T01:intron 35.0%
TAAAGTTAAATAGTAGCCCG+TGG - Chr5:6637676-6637695 None:intergenic 35.0%
TAATGAAATCGTCTTAGCAG+TGG + Chr5:6637818-6637837 MsG0580024589.01.T01:intron 35.0%
TATTCCAGCTGAAAAAGTCA+AGG + Chr5:6631573-6631592 MsG0580024589.01.T01:CDS 35.0%
TCAACAATTCCTTTGGACAT+AGG + Chr5:6632783-6632802 MsG0580024589.01.T01:intron 35.0%
TGAAAAACGAAAAAGAGGGA+GGG + Chr5:6633569-6633588 MsG0580024589.01.T01:intron 35.0%
TGACAGGACTCAAACTATTT+CGG - Chr5:6632857-6632876 None:intergenic 35.0%
TGCATATACAGTGAATGTAG+AGG - Chr5:6633275-6633294 None:intergenic 35.0%
TGGTATTTGAGCTGAATTGT+TGG - Chr5:6637046-6637065 None:intergenic 35.0%
TTGAGAGTTAGTAGTTCCTT+TGG - Chr5:6631617-6631636 None:intergenic 35.0%
TTTACCAGACGCAAATAACA+TGG - Chr5:6633819-6633838 None:intergenic 35.0%
! ACTTTTGCTGATAGGGAAAA+TGG - Chr5:6634813-6634832 None:intergenic 35.0%
! ATTATGGTCTTTTCCTCCAA+AGG + Chr5:6631598-6631617 MsG0580024589.01.T01:CDS 35.0%
! ATTGTCATTTGTGCACATCT+AGG - Chr5:6631520-6631539 None:intergenic 35.0%
! CAATTTTGTTGACAAAGGTG+TGG - Chr5:6634653-6634672 None:intergenic 35.0%
! CCATCTACACCTGTTATTTA+TGG + Chr5:6637063-6637082 MsG0580024589.01.T01:CDS 35.0%
! TAACGTTGTGCAATTTTAGG+GGG - Chr5:6635165-6635184 None:intergenic 35.0%
! TCATCCTCACCTGTTATTTA+TGG + Chr5:6631724-6631743 MsG0580024589.01.T01:CDS 35.0%
! TGAATGGAAAAGGTATGAGA+AGG + Chr5:6634979-6634998 MsG0580024589.01.T01:intron 35.0%
! TGTTGATGGAAGAATTGACA+TGG - Chr5:6633351-6633370 None:intergenic 35.0%
! TTTCAAATTTGGGACATTCC+AGG + Chr5:6636669-6636688 MsG0580024589.01.T01:CDS 35.0%
! TTTCGCTCCCCTAATATTTT+AGG + Chr5:6638008-6638027 MsG0580024589.01.T01:intron 35.0%
! TTTTGACGTCGTTCACAATT+AGG - Chr5:6633462-6633481 None:intergenic 35.0%
!! AATTGCTTTTGCAAGGAACA+AGG - Chr5:6633920-6633939 None:intergenic 35.0%
!! ACGTTTTGTTAATTTCAGGG+GGG + Chr5:6635876-6635895 MsG0580024589.01.T01:intron 35.0%
!! AGGGTGTTTCTCTATTTTGT+AGG + Chr5:6633143-6633162 MsG0580024589.01.T01:intron 35.0%
!! CATAGCTTTATATCGCTGAT+AGG + Chr5:6633371-6633390 MsG0580024589.01.T01:intron 35.0%
!! GACGTTTTGTTAATTTCAGG+GGG + Chr5:6635875-6635894 MsG0580024589.01.T01:intron 35.0%
!! GGAGCTTGTTGAAAATTCAT+AGG - Chr5:6636629-6636648 None:intergenic 35.0%
!!! ATATCGTTGACTTTTTCAGC+TGG - Chr5:6636919-6636938 None:intergenic 35.0%
AAATAGCATAAGACCAGTGG+CGG - Chr5:6638040-6638059 None:intergenic 40.0%
AACATACGCATGAGTTATGC+GGG - Chr5:6636116-6636135 None:intergenic 40.0%
AACCGTTACACAAACCAACA+AGG - Chr5:6637493-6637512 None:intergenic 40.0%
AAGGAAGGCCAATCAATGAA+TGG + Chr5:6634963-6634982 MsG0580024589.01.T01:intron 40.0%
AATTGTGGTAGTTTCCGTGA+TGG - Chr5:6638121-6638140 None:intergenic 40.0%
ACAGAAAAAGTTGACGAAGG+GGG - Chr5:6635197-6635216 None:intergenic 40.0%
ACAGAAAAATTTGACGGAGG+GGG + Chr5:6635815-6635834 MsG0580024589.01.T01:intron 40.0%
ACAGCAAAGACATCTAGTGA+CGG - Chr5:6634937-6634956 None:intergenic 40.0%
ACCGTTACACAAACCAACAA+GGG - Chr5:6637492-6637511 None:intergenic 40.0%
ACCTCTTGTAGAAAGAGATG+GGG - Chr5:6636650-6636669 None:intergenic 40.0%
AGAGTTAGTAGTTCCTTTGG+AGG - Chr5:6631614-6631633 None:intergenic 40.0%
AGTACAAGAACGATAGCATG+TGG + Chr5:6635040-6635059 MsG0580024589.01.T01:intron 40.0%
AGTGAAGCTTTCCTAGTCAT+TGG - Chr5:6631866-6631885 None:intergenic 40.0%
ATAAGTGCAAAACTTCAGGG+GGG - Chr5:6635786-6635767 None:intergenic 40.0%
ATAAGTGCAAAACTTCAGGG+TGG + Chr5:6635767-6635786 MsG0580024589.01.T01:intron 40.0%
ATAGTCAAGTCTCCTATGGT+AGG - Chr5:6634491-6634510 None:intergenic 40.0%
CATAAGTGCAAAACTTCAGG+GGG - Chr5:6635785-6635766 None:intergenic 40.0%
CATGCATTTCCTATGTCCAA+AGG - Chr5:6632795-6632814 None:intergenic 40.0%
CTAGGAAAGCTTCACTTCAT+CGG + Chr5:6631870-6631889 MsG0580024589.01.T01:CDS 40.0%
CTGAGATTGAACCATCATGA+AGG + Chr5:6633517-6633536 MsG0580024589.01.T01:intron 40.0%
CTGCAATTACAATGCCATCA+CGG + Chr5:6638104-6638123 MsG0580024589.01.T01:intron 40.0%
GCACATAAGTGCAAAACTTC+AGG + Chr5:6635763-6635782 MsG0580024589.01.T01:intron 40.0%
GCACATAAGTGCAAAACTTC+AGG - Chr5:6635782-6635763 None:intergenic 40.0%
GCCATCAATTTGTGATCAGT+CGG + Chr5:6632652-6632671 MsG0580024589.01.T01:intron 40.0%
GGAGTCATCTTGAAAGATGA+TGG + Chr5:6633616-6633635 MsG0580024589.01.T01:intron 40.0%
GGCCAATCAATGAATGGAAA+AGG + Chr5:6634969-6634988 MsG0580024589.01.T01:intron 40.0%
GTAGCAAAAGAACATGTACC+TGG - Chr5:6631400-6631419 None:intergenic 40.0%
GTTGCTAGTTGCTACAACAA+AGG - Chr5:6633842-6633861 None:intergenic 40.0%
GTTGTAAAAACTGTCTACGG+CGG + Chr5:6634831-6634850 MsG0580024589.01.T01:intron 40.0%
TCTCAAATGGCGTCATGTAA+AGG + Chr5:6633644-6633663 MsG0580024589.01.T01:intron 40.0%
TCTTGGAAAGAAGGATGGAT+AGG + Chr5:6638237-6638256 MsG0580024589.01.T01:CDS 40.0%
TCTTGGAGAAAAGGAAGGAT+AGG + Chr5:6631894-6631913 MsG0580024589.01.T01:CDS 40.0%
TGCTATCGTTCTTGTACTGT+TGG - Chr5:6635038-6635057 None:intergenic 40.0%
TGCTGATAGGGAAAATGGAT+CGG - Chr5:6634808-6634827 None:intergenic 40.0%
TGGAGTACAAAACAAGGCTT+CGG + Chr5:6634445-6634464 MsG0580024589.01.T01:intron 40.0%
TTAACGTTGTGCAATTTCGG+GGG + Chr5:6635846-6635865 MsG0580024589.01.T01:intron 40.0%
TTACATGACGCCATTTGAGA+TGG - Chr5:6633644-6633663 None:intergenic 40.0%
! ATCATGGTCTTTTGCACCAA+AGG + Chr5:6636937-6636956 MsG0580024589.01.T01:CDS 40.0%
! ATTGTCATTTGGGCACTTCT+AGG - Chr5:6636859-6636878 None:intergenic 40.0%
! CATTCTGATTTGTGGTCTTG+TGG - Chr5:6633050-6633069 None:intergenic 40.0%
! TGGAGCTACATTCTGATTTG+TGG - Chr5:6633058-6633077 None:intergenic 40.0%
! TTCTAGCAAGAAATGATGGG+TGG - Chr5:6631678-6631697 None:intergenic 40.0%
! TTTGCCATGTTATTTGCGTC+TGG + Chr5:6633812-6633831 MsG0580024589.01.T01:intron 40.0%
!! AACGTTGTGCAATTTTAGGG+GGG - Chr5:6635164-6635183 None:intergenic 40.0%
!! CATGCGTATGTTTTGAACTC+AGG + Chr5:6636124-6636143 MsG0580024589.01.T01:intron 40.0%
!! CGTTTTGTTAATTTCAGGGG+GGG + Chr5:6635877-6635896 MsG0580024589.01.T01:intron 40.0%
!! TATGAAAGAGTTGGTGAGGA+GGG - Chr5:6636524-6636543 None:intergenic 40.0%
!! TTATGAAAGAGTTGGTGAGG+AGG - Chr5:6636525-6636544 None:intergenic 40.0%
!! TTCATCGGTTCTTGGAAAGA+AGG + Chr5:6638228-6638247 MsG0580024589.01.T01:CDS 40.0%
!! TTCATCGGTTCTTGGAGAAA+AGG + Chr5:6631885-6631904 MsG0580024589.01.T01:CDS 40.0%
!!! ATGTCCTTGACTTTTTCAGC+TGG - Chr5:6631580-6631599 None:intergenic 40.0%
AAAAAGAGGTCTCCTACGGT+AGG + Chr5:6636058-6636077 MsG0580024589.01.T01:intron 45.0%
AAAACGAAAAAGAGGGAGGG+TGG + Chr5:6633572-6633591 MsG0580024589.01.T01:intron 45.0%
AAGAACGATAGCATGTGGCA+AGG + Chr5:6635045-6635064 MsG0580024589.01.T01:intron 45.0%
AGTACAAAACAAGGCTTCGG+TGG + Chr5:6634448-6634467 MsG0580024589.01.T01:intron 45.0%
AGTTAAATAGTAGCCCGTGG+TGG - Chr5:6637673-6637692 None:intergenic 45.0%
ATACACTATTGACCCACCAC+GGG + Chr5:6637657-6637676 MsG0580024589.01.T01:intron 45.0%
ATTCATGTCATGGCTCTCCT+TGG + Chr5:6633013-6633032 MsG0580024589.01.T01:intron 45.0%
CATACACTATTGACCCACCA+CGG + Chr5:6637656-6637675 MsG0580024589.01.T01:intron 45.0%
CTAGGAAGGCTTCACTTCAT+CGG + Chr5:6638213-6638232 MsG0580024589.01.T01:CDS 45.0%
CTATGGTAGGAGACCTAAGA+AGG - Chr5:6634478-6634497 None:intergenic 45.0%
CTTCTTAGGTCTCCTACCAT+AGG + Chr5:6634476-6634495 MsG0580024589.01.T01:intron 45.0%
GAACAGTTTGACTGAGAAGC+AGG - Chr5:6634908-6634927 None:intergenic 45.0%
GCCGACTGATCACAAATTGA+TGG - Chr5:6632656-6632675 None:intergenic 45.0%
GTACAAAACAAGGCTTCGGT+GGG + Chr5:6634449-6634468 MsG0580024589.01.T01:intron 45.0%
GTCACTAGATGTCTTTGCTG+TGG + Chr5:6634936-6634955 MsG0580024589.01.T01:intron 45.0%
GTGGGTCAATAGTGTATGCA+TGG - Chr5:6637654-6637673 None:intergenic 45.0%
GTTAAATAGTAGCCCGTGGT+GGG - Chr5:6637672-6637691 None:intergenic 45.0%
GTTATTGCTGTGGTTTCGAG+AGG - Chr5:6636971-6636990 None:intergenic 45.0%
TAACGTTGTGCAATTTCGGG+GGG + Chr5:6635847-6635866 MsG0580024589.01.T01:intron 45.0%
TAAGTGCAAAACTTCAGGGG+GGG - Chr5:6635250-6635269 None:intergenic 45.0%
TAGGATGACGTCAAGTGAGA+GGG + Chr5:6633595-6633614 MsG0580024589.01.T01:intron 45.0%
TCCCCATCTCTTTCTACAAG+AGG + Chr5:6636646-6636665 MsG0580024589.01.T01:CDS 45.0%
TCGAGAGGTAGTAGTTCCTT+TGG - Chr5:6636956-6636975 None:intergenic 45.0%
TCGGTTCTTGGAAAGAAGGA+TGG + Chr5:6638232-6638251 MsG0580024589.01.T01:CDS 45.0%
TCGGTTCTTGGAGAAAAGGA+AGG + Chr5:6631889-6631908 MsG0580024589.01.T01:CDS 45.0%
TGAAATCGTCTTAGCAGTGG+CGG + Chr5:6637821-6637840 MsG0580024589.01.T01:intron 45.0%
TTTGCAAGGAACAAGGTCCA+AGG - Chr5:6633913-6633932 None:intergenic 45.0%
! AGGGCACCCTCTCAATATTT+GGG - Chr5:6637473-6637492 None:intergenic 45.0%
! ATGTCTTTGCTGTGGTTGCA+AGG + Chr5:6634944-6634963 MsG0580024589.01.T01:intron 45.0%
! TGGAAGCGTAGTTATTGCTG+TGG - Chr5:6636981-6637000 None:intergenic 45.0%
!! AAGGGCACCCTCTCAATATT+TGG - Chr5:6637474-6637493 None:intergenic 45.0%
!! AGCTTCACTTCATCGGTTCT+TGG + Chr5:6631877-6631896 MsG0580024589.01.T01:CDS 45.0%
!! GATGATGGTGCCATCTCAAA+TGG + Chr5:6633631-6633650 MsG0580024589.01.T01:intron 45.0%
!! GCCCTTGTTGGTTTGTGTAA+CGG + Chr5:6637488-6637507 MsG0580024589.01.T01:intron 45.0%
!! TTGTGGTCTTGTGGTGATTG+TGG - Chr5:6633041-6633060 None:intergenic 45.0%
!! TTTTAGGTAAGATCCGCCAC+TGG + Chr5:6638024-6638043 MsG0580024589.01.T01:intron 45.0%
!! TAAAAAAAAAAAAAAAAAAG+AGG + Chr5:6636044-6636063 MsG0580024589.01.T01:intron 5.0%
!!! AATAATTTTTTTTCAAAAAT+AGG + Chr5:6633719-6633738 MsG0580024589.01.T01:intron 5.0%
!!! TAAAAAAATCTAATTTTTTT+CGG + Chr5:6632273-6632292 MsG0580024589.01.T01:intron 5.0%
!!! TATTTATTTTTTTTTTAGTA+GGG - Chr5:6637878-6637897 None:intergenic 5.0%
!!! TTATTTATTTTTTTTTTAGT+AGG - Chr5:6637879-6637898 None:intergenic 5.0%
AAGTGCAAAACTTCAGGGGG+GGG - Chr5:6635249-6635268 None:intergenic 50.0%
CAAGGGAGCCAAATGAGAGA+GGG - Chr5:6637951-6637970 None:intergenic 50.0%
CTACGGTAGGAGACCTAAGA+AGG + Chr5:6636071-6636090 MsG0580024589.01.T01:intron 50.0%
CTTCTTAGGTCTCCTACCGT+AGG - Chr5:6636073-6636092 None:intergenic 50.0%
GTAGGATGACGTCAAGTGAG+AGG + Chr5:6633594-6633613 MsG0580024589.01.T01:intron 50.0%
TCAAGGGAGCCAAATGAGAG+AGG - Chr5:6637952-6637971 None:intergenic 50.0%
TGGTGAGAGTGAAGAGAGAG+CGG - Chr5:6636501-6636520 None:intergenic 50.0%
TTTGGATGCAGTTGCGGATG+CGG + Chr5:6637530-6637549 MsG0580024589.01.T01:intron 50.0%
! CTTTGCTGTGGTTGCAAGGA+AGG + Chr5:6634948-6634967 MsG0580024589.01.T01:intron 50.0%
! GTCGTAGACAGTAGAAGCGT+CGG - Chr5:6634868-6634887 None:intergenic 50.0%
! TTGTGGTGATTGTGGTGCCA+AGG - Chr5:6633033-6633052 None:intergenic 50.0%
!! GCATTTTTGGAGGGGTTCCT+TGG + Chr5:6633893-6633912 MsG0580024589.01.T01:intron 50.0%
!! GGCTTCACTTCATCGGTTCT+TGG + Chr5:6638220-6638239 MsG0580024589.01.T01:CDS 50.0%
!! TATTGAGAGGGTGCCCTTGT+TGG + Chr5:6637476-6637495 MsG0580024589.01.T01:intron 50.0%
AGAAGGTCTCCCACCCGAAA+CGG + Chr5:6636088-6636107 MsG0580024589.01.T01:intron 55.0%
AGTGCAAAACTTCAGGGGGG+GGG - Chr5:6635248-6635267 None:intergenic 55.0%
CGAAAAAGAGGGAGGGTGGT+AGG + Chr5:6633576-6633595 MsG0580024589.01.T01:intron 55.0%
CTTCGGTGGGAGACCTTCTT+AGG + Chr5:6634462-6634481 MsG0580024589.01.T01:intron 55.0%
GGGGTGACTCTGAGCAAATC+TGG - Chr5:6637001-6637020 None:intergenic 55.0%
TGCGGTCATTGCAATGCGCA+CGG + Chr5:6637548-6637567 MsG0580024589.01.T01:intron 55.0%
TTCGGGTGGGAGACCTTCTT+AGG - Chr5:6636087-6636106 None:intergenic 55.0%
! TTTCAGGGGCACAAACCCCA+CGG - Chr5:6633948-6633967 None:intergenic 55.0%
!! GAAAGAGTTGGTGAGGAGGG+TGG - Chr5:6636521-6636540 None:intergenic 55.0%
!! GTAGACAGTAGAAGCGTCGG+TGG - Chr5:6634865-6634884 None:intergenic 55.0%
CTAAAGAGCCCAGGGGAGCA+GGG + Chr5:6637848-6637867 MsG0580024589.01.T01:intron 60.0%
GTGCAAAACTTCAGGGGGGG+GGG - Chr5:6635247-6635266 None:intergenic 60.0%
TCTAAAGAGCCCAGGGGAGC+AGG + Chr5:6637847-6637866 MsG0580024589.01.T01:intron 60.0%
TGCAAAACTTCAGGGGGGGG+GGG - Chr5:6635246-6635265 None:intergenic 60.0%
! AGTTATGCGGGCGCCGTTTC+GGG - Chr5:6636104-6636123 None:intergenic 60.0%
! GAGTTATGCGGGCGCCGTTT+CGG - Chr5:6636105-6636124 None:intergenic 60.0%
!! CGGAGCTCTAAAGAGCCCAG+GGG + Chr5:6637841-6637860 MsG0580024589.01.T01:intron 60.0%
!! GCGGAGCTCTAAAGAGCCCA+GGG + Chr5:6637840-6637859 MsG0580024589.01.T01:intron 60.0%
GCAAAACTTCAGGGGGGGGG+GGG - Chr5:6635245-6635264 None:intergenic 65.0%
!! GGCGGAGCTCTAAAGAGCCC+AGG + Chr5:6637839-6637858 MsG0580024589.01.T01:intron 65.0%
! ATGCGGGCGCCGTTTCGGGT+GGG - Chr5:6636100-6636119 None:intergenic 70.0%
! TATGCGGGCGCCGTTTCGGG+TGG - Chr5:6636101-6636120 None:intergenic 70.0%
AGGGGGAGCCCTGCTCCCCT+GGG - Chr5:6637859-6637878 None:intergenic 75.0%
TAGGGGGAGCCCTGCTCCCC+TGG - Chr5:6637860-6637879 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
Chr5 gene 6631391 6638262 6631391 ID=MsG0580024589.01;Name=MsG0580024589.01
Chr5 mRNA 6631391 6638262 6631391 ID=MsG0580024589.01.T01;Parent=MsG0580024589.01;Name=MsG0580024589.01.T01;_AED=0.50;_eAED=0.52;_QI=0|0|0|1|0.5|0.8|5|0|278
Chr5 exon 6631391 6631745 6631391 ID=MsG0580024589.01.T01:exon:2515;Parent=MsG0580024589.01.T01
Chr5 exon 6631858 6631915 6631858 ID=MsG0580024589.01.T01:exon:2516;Parent=MsG0580024589.01.T01
Chr5 exon 6636589 6636690 6636589 ID=MsG0580024589.01.T01:exon:2517;Parent=MsG0580024589.01.T01
Chr5 exon 6636825 6637084 6636825 ID=MsG0580024589.01.T01:exon:2518;Parent=MsG0580024589.01.T01
Chr5 exon 6638201 6638262 6638201 ID=MsG0580024589.01.T01:exon:2519;Parent=MsG0580024589.01.T01
Chr5 CDS 6631391 6631745 6631391 ID=MsG0580024589.01.T01:cds;Parent=MsG0580024589.01.T01
Chr5 CDS 6631858 6631915 6631858 ID=MsG0580024589.01.T01:cds;Parent=MsG0580024589.01.T01
Chr5 CDS 6636589 6636690 6636589 ID=MsG0580024589.01.T01:cds;Parent=MsG0580024589.01.T01
Chr5 CDS 6636825 6637084 6636825 ID=MsG0580024589.01.T01:cds;Parent=MsG0580024589.01.T01
Chr5 CDS 6638201 6638262 6638201 ID=MsG0580024589.01.T01:cds;Parent=MsG0580024589.01.T01
Gene Sequence

>MsG0580024589.01.T01

GAAATTCCAGGTACATGTTCTTTTGCTACTTTTAACTTGTCAAGTCCTTCAACATTTTTTTTAGTAGGACTATTGCTAAATCATTATTTTTACAGTGTAATGAAGGCTAATATTAAGAAGGAAGAGCCTAGATGTGCACAAATGACAATTTTTTATGATGGGAAAGTAATAGTGTTTGATGATATTCCAGCTGAAAAAGTCAAGGACATTATGGTCTTTTCCTCCAAAGGAACTACTAACTCTCAAAACCACAACAATAACTATGCTTTCAGATTTGCTCAGAGCCACCCATCATTTCTTGCTAGAAATTCTGCCAACAATTCTCTTCAAGTATCATCCTCACCTGTTATTTATGATTTACCAATGACTAGGAAAGCTTCACTTCATCGGTTCTTGGAGAAAAGGAAGGATAGCACAAAGCAACATGAATCACTACAAAACTTACGTACACCTATGAATTTTCAACAAGCTCCCCATCTCTTTCTACAAGAGGTTTCAAATTTGGGACATTCCAGTGTAATGAAGACTAATATTATCAAGGAAGAGCCTAGAAGTGCCCAAATGACAATTTTTTATGATGGGAAAGTAATTGTGTTTGATGATATTCCAGCTGAAAAAGTCAACGATATCATGGTCTTTTGCACCAAAGGAACTACTACCTCTCGAAACCACAGCAATAACTACGCTTCCAGATTTGCTCAGAGTCACCCCTCATTTCTTGCTAGAAATTTTGCCAACAATTCAGCTCAAATACCATCTACACCTGTTATTTATGATTTATCAATTACTAGGAAGGCTTCACTTCATCGGTTCTTGGAAAGAAGGATGGATAGGTAA
Protein sequence

>MsG0580024589.01.T01

EIPGTCSFATFNLSSPSTFFLVGLLLNHYFYSVMKANIKKEEPRCAQMTIFYDGKVIVFDDIPAEKVKDIMVFSSKGTTNSQNHNNNYAFRFAQSHPSFLARNSANNSLQVSSSPVIYDLPMTRKASLHRFLEKRKDSTKQHESLQNLRTPMNFQQAPHLFLQEVSNLGHSSVMKTNIIKEEPRSAQMTIFYDGKVIVFDDIPAEKVNDIMVFCTKGTTTSRNHSNNYASRFAQSHPSFLARNFANNSAQIPSTPVIYDLSITRKASLHRFLERRMDR*