AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0180004277.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180004277.01.T01 MTR_1g076330 96.758 586 18 1 1 585 176 761 0.0 1157
MsG0180004277.01.T01 MTR_1g076330 96.758 586 18 1 1 585 270 855 0.0 1157
MsG0180004277.01.T01 MTR_1g076330 96.758 586 18 1 1 585 254 839 0.0 1156
MsG0180004277.01.T01 MTR_1g076330 95.785 522 21 1 1 521 249 770 0.0 1025
MsG0180004277.01.T01 MTR_1g076330 95.785 522 21 1 1 521 270 791 0.0 1024
MsG0180004277.01.T01 MTR_1g076330 94.931 434 21 1 1 433 270 703 0.0 851
MsG0180004277.01.T01 MTR_1g076330 94.931 434 21 1 1 433 249 682 0.0 851
MsG0180004277.01.T01 MTR_7g117580 25.828 604 349 18 15 578 56 600 2.26e-40 155
MsG0180004277.01.T01 MTR_7g117580 26.000 600 353 17 15 578 280 824 2.37e-39 154
MsG0180004277.01.T01 MTR_2g005870 25.671 596 360 15 15 578 338 882 5.64e-39 153
MsG0180004277.01.T01 MTR_2g005870 25.722 381 230 8 15 387 338 673 1.44e-24 108
MsG0180004277.01.T01 MTR_7g117580 25.263 380 234 9 15 387 280 616 1.95e-22 102
MsG0180004277.01.T01 MTR_7g117580 27.027 259 175 5 15 268 280 529 1.23e-18 90.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180004277.01.T01 AT5G43745 66.212 586 192 3 1 585 237 817 0.0 791
MsG0180004277.01.T01 AT5G02940 64.686 589 196 4 1 585 233 813 0.0 765
MsG0180004277.01.T01 AT5G02940 62.418 612 195 5 1 585 233 836 0.0 753
MsG0180004277.01.T01 AT5G49960 25.768 586 365 14 15 575 281 821 7.19e-41 159
MsG0180004277.01.T01 AT5G49960 25.858 379 231 8 15 387 281 615 1.31e-27 118
MsG0180004277.01.T01 AT5G49960 25.858 379 231 8 15 387 281 615 1.63e-27 117

Find 135 sgRNAs with CRISPR-Local

Find 340 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCAATGCAATTACCAAATTT+TGG 0.068491 1:+75929667 None:intergenic
ATTCAAAATGGTTTCCTTTA+AGG 0.073901 1:+75931876 None:intergenic
TTTCTGAGAGAGCATATTTA+AGG 0.151867 1:-75929946 MsG0180004277.01.T01:CDS
AGAAATTGTCGATTCAAAAT+TGG 0.174597 1:-75931228 MsG0180004277.01.T01:CDS
CATTAAATGACAGGATTATT+AGG 0.177184 1:-75932061 MsG0180004277.01.T01:CDS
CTAATAATCCTGTCATTTAA+TGG 0.182682 1:+75932062 None:intergenic
GAAATTCTGACCCCAAAATT+TGG 0.202536 1:-75929679 MsG0180004277.01.T01:three_prime_UTR
TCTGACAAAGATTGGCTTCT+TGG 0.213550 1:-75931802 MsG0180004277.01.T01:CDS
AGGGGTTCTGACTTTGAAAT+TGG 0.214303 1:+75929791 None:intergenic
AGAGCATTGAACAAATAATT+TGG 0.238735 1:+75933486 None:intergenic
TCTCTCCTTCTTTCATATAA+AGG 0.245635 1:+75929987 None:intergenic
CCTTCAACCAATTCCAGATA+TGG 0.255524 1:-75933702 MsG0180004277.01.T01:CDS
TAATTATGCTGAGAATATTT+AGG 0.258678 1:-75929701 MsG0180004277.01.T01:three_prime_UTR
CATGGACTACGGCACCTTAA+AGG 0.272237 1:-75931890 MsG0180004277.01.T01:CDS
TGCAGAATTTCATCATCATT+TGG 0.285455 1:+75932879 None:intergenic
TTCATTCAATTCACTATTCT+CGG 0.286894 1:+75930916 None:intergenic
GAAATTGTCGATTCAAAATT+GGG 0.301885 1:-75931227 MsG0180004277.01.T01:CDS
ATAGTGAATTGAATGAAGTT+TGG 0.306785 1:-75930910 MsG0180004277.01.T01:CDS
CTGTTGTATGTGGTCTTTAC+CGG 0.310048 1:-75932923 MsG0180004277.01.T01:CDS
TGAAGTCTGAATATTCAAAA+TGG 0.312714 1:+75931864 None:intergenic
CAAAATTTGGTAATTGCATT+GGG 0.313430 1:-75929666 MsG0180004277.01.T01:three_prime_UTR
CCTCGTTAGGTATTGTTCAT+TGG 0.325696 1:-75932761 MsG0180004277.01.T01:intron
CTTGCATATCTGACAAAGAT+TGG 0.330744 1:-75931810 MsG0180004277.01.T01:CDS
GATATGCAAGCAATTGAAAA+AGG 0.332048 1:+75931823 None:intergenic
CTTCAACAAGTCACATGTTT+GGG 0.332614 1:+75933552 None:intergenic
AGTAAAAGAATGCATTCTTT+TGG 0.333418 1:+75932453 None:intergenic
GCAGAATTTCATCATCATTT+GGG 0.346170 1:+75932880 None:intergenic
ATTAAATGACAGGATTATTA+GGG 0.346750 1:-75932060 MsG0180004277.01.T01:CDS
TGCAGCTTGCCTGATCTTGA+AGG 0.354653 1:-75933073 MsG0180004277.01.T01:CDS
TTAAATGTAAAATATGTAAA+TGG 0.362555 1:-75929538 MsG0180004277.01.T01:three_prime_UTR
CCACAAGTTATAACCACAAA+TGG 0.365342 1:-75932716 MsG0180004277.01.T01:CDS
TCTCGGTCCTGGAAGTGTTT+TGG 0.368444 1:-75932382 MsG0180004277.01.T01:intron
ACTTCAACAAGTCACATGTT+TGG 0.378442 1:+75933551 None:intergenic
CCAAAATTTGGTAATTGCAT+TGG 0.390652 1:-75929667 MsG0180004277.01.T01:three_prime_UTR
AGAATGTTCGAGTTTCTCAT+AGG 0.392413 1:-75932010 MsG0180004277.01.T01:CDS
CTTTAAGGTGCCGTAGTCCA+TGG 0.393693 1:+75931891 None:intergenic
AAACATACCAAAACACTTCC+AGG 0.411264 1:+75932375 None:intergenic
ATTGATATATGTAGGTTTCA+AGG 0.414000 1:-75933576 MsG0180004277.01.T01:intron
ATAATTATACTGCCAGCAAA+AGG 0.414426 1:-75934507 MsG0180004277.01.T01:CDS
TATGTGGTCTTTACCGGAAT+GGG 0.416645 1:-75932917 MsG0180004277.01.T01:CDS
GTGGGGACAGAACCCATATC+TGG 0.420607 1:+75933689 None:intergenic
GAAAATATCTGCGACAAACT+TGG 0.422042 1:-75931670 MsG0180004277.01.T01:CDS
AGCAGATAGCTTATCTGTCT+TGG 0.425298 1:+75931711 None:intergenic
ACCGATCATATCATTATTTG+TGG 0.426209 1:-75935131 MsG0180004277.01.T01:CDS
CCATTTGTGGTTATAACTTG+TGG 0.429550 1:+75932716 None:intergenic
TTCCAAGAAAACAGATTGAT+AGG 0.432088 1:-75934905 MsG0180004277.01.T01:CDS
TTGGAAGATCAGACATAAGA+AGG 0.434726 1:+75934922 None:intergenic
TTGGATGCAACATCTTCTAC+TGG 0.434987 1:+75933505 None:intergenic
TTGAATCATTTCTACAACAT+CGG 0.436367 1:+75932419 None:intergenic
GTTCTTCTTCACATAACCTA+TGG 0.436383 1:+75929913 None:intergenic
ACAGAACCCATATCTGGAAT+TGG 0.442566 1:+75933695 None:intergenic
TGAATCATTTCTACAACATC+GGG 0.447283 1:+75932420 None:intergenic
GGGGTTCTGACTTTGAAATT+GGG 0.448435 1:+75929792 None:intergenic
CTTCAACCAATTCCAGATAT+GGG 0.456773 1:-75933701 MsG0180004277.01.T01:CDS
TATTCAGACTTCATTGAAGA+AGG 0.463327 1:-75931854 MsG0180004277.01.T01:CDS
TTTAAGGTGCCGTAGTCCAT+GGG 0.463795 1:+75931892 None:intergenic
AGAGTAATATGCAAAGGCTC+AGG 0.468992 1:-75935181 MsG0180004277.01.T01:CDS
GACTTGTTGAAGTCAATCTC+GGG 0.469582 1:-75933541 MsG0180004277.01.T01:CDS
CCATATCTGGAATTGGTTGA+AGG 0.469691 1:+75933702 None:intergenic
TATGTCATTCCTTCAAGATC+AGG 0.471383 1:+75933064 None:intergenic
TTATTTCAGGCTGTTGTATG+TGG 0.479952 1:-75932933 MsG0180004277.01.T01:intron
TTCTGTCCCCACAATAGTTG+AGG 0.480508 1:-75933678 MsG0180004277.01.T01:intron
TCAGAAAGCTCGGAAAATGA+TGG 0.485822 1:+75929962 None:intergenic
ATTAGCCTTTATATGAAAGA+AGG 0.487807 1:-75929992 MsG0180004277.01.T01:CDS
AATGACCTTGAGCAGTTACA+AGG 0.490244 1:+75931044 None:intergenic
TATGAGAACTATCTCGGTCC+TGG 0.491562 1:-75932393 MsG0180004277.01.T01:CDS
TTTAGCTGCTTTAATATGAA+AGG 0.497921 1:+75935092 None:intergenic
GTGGCTTATTAGTATTCTGA+AGG 0.498207 1:+75932735 None:intergenic
CAGAGACGCCATTAAATGAC+AGG 0.499203 1:-75932070 MsG0180004277.01.T01:CDS
GACAAAGATTGGCTTCTTGG+AGG 0.500058 1:-75931799 MsG0180004277.01.T01:intron
TATTTCCTCCGCCGCAACAT+AGG 0.501247 1:+75931072 None:intergenic
ATTGATAGTCATATCTGAGC+TGG 0.501789 1:-75929747 MsG0180004277.01.T01:CDS
TAATTATACTGCCAGCAAAA+GGG 0.507131 1:-75934506 MsG0180004277.01.T01:CDS
TAACAAACCTCAACTATTGT+GGG 0.508090 1:+75933671 None:intergenic
AAGGACTTATAAAGATCTAC+AGG 0.509152 1:-75933456 MsG0180004277.01.T01:CDS
TGACTTGTTGAAGTCAATCT+CGG 0.511323 1:-75933542 MsG0180004277.01.T01:CDS
AATTATTTGTTCAATGCTCT+CGG 0.514496 1:-75933483 MsG0180004277.01.T01:CDS
ATAACCACAAATGGGAAAGA+AGG 0.514985 1:-75932707 MsG0180004277.01.T01:CDS
GTAACGCGTCCTAACAGATC+TGG 0.516914 1:-75932602 MsG0180004277.01.T01:CDS
AGTGACCTATGTTGCGGCGG+AGG 0.517374 1:-75931077 MsG0180004277.01.T01:CDS
CACAAGTTATAACCACAAAT+GGG 0.517797 1:-75932715 MsG0180004277.01.T01:CDS
GTTCAATGCTCTCGGCAGAA+AGG 0.520032 1:-75933475 MsG0180004277.01.T01:CDS
ATCTTGAAGGAATGACATAT+AGG 0.524524 1:-75933060 MsG0180004277.01.T01:CDS
GTCAGTCAATTCAAGAGAGA+GGG 0.525834 1:+75929772 None:intergenic
TCTTACTTTACTCAATTCGA+TGG 0.529133 1:+75932637 None:intergenic
CAGCATAATTACAAAATGAC+CGG 0.533687 1:+75929713 None:intergenic
AATGGGAAAGAAGGAAAAGA+TGG 0.536238 1:-75932698 MsG0180004277.01.T01:CDS
AATTATACTGCCAGCAAAAG+GGG 0.536630 1:-75934505 MsG0180004277.01.T01:CDS
CAAGAGTATGAGAACTATCT+CGG 0.537222 1:-75932399 MsG0180004277.01.T01:CDS
CACGAGTTTGCTGTTCGCCT+AGG 0.538803 1:-75935062 MsG0180004277.01.T01:CDS
TTGAGCCTTGTAACTGCTCA+AGG 0.539272 1:-75931049 MsG0180004277.01.T01:intron
GTAACAAACCTCAACTATTG+TGG 0.540000 1:+75933670 None:intergenic
ATATGCTCTCTCAGAAAGCT+CGG 0.542579 1:+75929952 None:intergenic
ATCACCATTTAGGCAGCAGA+CGG 0.544517 1:-75932486 MsG0180004277.01.T01:intron
CCGATCATATCATTATTTGT+GGG 0.545928 1:-75935130 MsG0180004277.01.T01:CDS
ATTATTAGGGAAAACATCGT+TGG 0.550733 1:-75932047 MsG0180004277.01.T01:CDS
TACTGCCAGCAAAAGGGGAT+CGG 0.554950 1:-75934500 MsG0180004277.01.T01:intron
ACCTTGGAACCAGATCTGTT+AGG 0.555505 1:+75932593 None:intergenic
CATATCTGGAATTGGTTGAA+GGG 0.560971 1:+75933703 None:intergenic
GTATGTGGTCTTTACCGGAA+TGG 0.565150 1:-75932918 MsG0180004277.01.T01:CDS
CTGCGACAAACTTGGAGTCA+AGG 0.565908 1:-75931662 MsG0180004277.01.T01:intron
TTAAGGAGAGAAGTAGCCAT+AGG 0.566286 1:-75929929 MsG0180004277.01.T01:CDS
ATTGGAAACCCCATGGACTA+CGG 0.567157 1:-75931901 MsG0180004277.01.T01:CDS
GAATGTTCGAGTTTCTCATA+GGG 0.567985 1:-75932009 MsG0180004277.01.T01:intron
GGGAGCACAAATGCAAGTCA+TGG 0.570238 1:-75935156 MsG0180004277.01.T01:CDS
TAGGCAGCAGACGGGAATGT+AGG 0.574180 1:-75932477 MsG0180004277.01.T01:CDS
TCACCATTTAGGCAGCAGAC+GGG 0.585510 1:-75932485 MsG0180004277.01.T01:intron
TGAGCTGGAAGGTGAACAGC+CGG 0.586773 1:-75929732 MsG0180004277.01.T01:CDS
CGCAACAGAGTAATATGCAA+AGG 0.588880 1:-75935187 MsG0180004277.01.T01:CDS
GAATTTCATCATCATTTGGG+TGG 0.590474 1:+75932883 None:intergenic
TCCTAACAGATCTGGTTCCA+AGG 0.594226 1:-75932594 MsG0180004277.01.T01:intron
GAGTAATATGCAAAGGCTCA+GGG 0.597688 1:-75935180 MsG0180004277.01.T01:CDS
CCCACAAATAATGATATGAT+CGG 0.599046 1:+75935130 None:intergenic
AGTCAGTCAATTCAAGAGAG+AGG 0.599157 1:+75929771 None:intergenic
ACCTAGCTGAAGCAGTGCCT+AGG 0.600093 1:+75935045 None:intergenic
AGCGTCGATACCTCTTGCTA+AGG 0.600603 1:+75934841 None:intergenic
GCCGCAACATAGGTCACTGA+TGG 0.603508 1:+75931082 None:intergenic
GGGTGATGAAATATATGTGA+AGG 0.604673 1:-75930867 MsG0180004277.01.T01:intron
GCCATCAGTGACCTATGTTG+CGG 0.607641 1:-75931083 MsG0180004277.01.T01:CDS
TGGCTTATTAGTATTCTGAA+GGG 0.612456 1:+75932736 None:intergenic
AAAATTTGGTAATTGCATTG+GGG 0.616593 1:-75929665 MsG0180004277.01.T01:three_prime_UTR
GAAAGACATACTAGATGCAG+AGG 0.618766 1:-75930888 MsG0180004277.01.T01:CDS
ATATTGATCTCCTTAGCAAG+AGG 0.619450 1:-75934851 MsG0180004277.01.T01:intron
ATCAGTGACCTATGTTGCGG+CGG 0.620787 1:-75931080 MsG0180004277.01.T01:CDS
AAATTGTCGATTCAAAATTG+GGG 0.621368 1:-75931226 MsG0180004277.01.T01:CDS
TCAGTCAATTCAAGAGAGAG+GGG 0.638151 1:+75929773 None:intergenic
ATAGTCATATCTGAGCTGGA+AGG 0.647720 1:-75929743 MsG0180004277.01.T01:CDS
GCCTAGGCACTGCTTCAGCT+AGG 0.650589 1:-75935046 MsG0180004277.01.T01:intron
ACTATAGATTGGAAACCCCA+TGG 0.653465 1:-75931908 MsG0180004277.01.T01:intron
AACAAACCTCAACTATTGTG+GGG 0.656942 1:+75933672 None:intergenic
AATATGCAAAGGCTCAGGGA+GGG 0.673017 1:-75935176 MsG0180004277.01.T01:CDS
TAATATGCAAAGGCTCAGGG+AGG 0.678347 1:-75935177 MsG0180004277.01.T01:CDS
TTAAGGTGCCGTAGTCCATG+GGG 0.678704 1:+75931893 None:intergenic
ACTTGTTGAAGTCAATCTCG+GGG 0.695230 1:-75933540 MsG0180004277.01.T01:CDS
AAAGACATACTAGATGCAGA+GGG 0.713150 1:-75930887 MsG0180004277.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! CATATGATTAATTTAATTAA+TGG + Chr1:75929993-75930012 None:intergenic 10.0%
!! CATTAATGTAAAATTATAAA+TGG + Chr1:75931698-75931717 None:intergenic 10.0%
!! TTAAATGTAAAATATGTAAA+TGG - Chr1:75935130-75935149 MsG0180004277.01.T01:CDS 10.0%
!!! ATAAATTATTCATTCAATTT+TGG - Chr1:75931395-75931414 MsG0180004277.01.T01:intron 10.0%
!!! ATATTTTTATTATTGTTTTG+CGG + Chr1:75932404-75932423 None:intergenic 10.0%
!!! GTTTTATTTTGAATAATAAT+TGG - Chr1:75934808-75934827 MsG0180004277.01.T01:intron 10.0%
!!! TAATATTTTTTTGTTATGAT+AGG - Chr1:75933029-75933048 MsG0180004277.01.T01:intron 10.0%
!!! TTTATTTTTTCTTATTATAC+AGG - Chr1:75934651-75934670 MsG0180004277.01.T01:intron 10.0%
!! AAATTAGAAATATTTCCAAA+AGG + Chr1:75933062-75933081 None:intergenic 15.0%
!! AATCTCTTTGATAAATTATA+TGG + Chr1:75934010-75934029 None:intergenic 15.0%
!! ATAAATCATGTTCAAATTTA+TGG + Chr1:75934498-75934517 None:intergenic 15.0%
!! CAATTAAGAAAATTTCAAAT+AGG + Chr1:75931076-75931095 None:intergenic 15.0%
!! CATTCCAAAAAATTTATATA+TGG - Chr1:75934321-75934340 MsG0180004277.01.T01:intron 15.0%
!! CTATATATTGATATTATTTC+AGG - Chr1:75931722-75931741 MsG0180004277.01.T01:intron 15.0%
!! GTAAAAAAAATATTAAACAC+CGG + Chr1:75931546-75931565 None:intergenic 15.0%
!! TTCTAATTTCTCTAAATATA+TGG - Chr1:75933073-75933092 MsG0180004277.01.T01:CDS 15.0%
!!! AAAGTTGTTAACATTTTATT+TGG - Chr1:75935202-75935221 MsG0180004277.01.T01:CDS 15.0%
!!! AAATGATTTTGTTAAACTAA+GGG + Chr1:75930111-75930130 None:intergenic 15.0%
!!! CAAACCATATATAAATTTTT+TGG + Chr1:75934328-75934347 None:intergenic 15.0%
!!! TATATTTTTTTACATTGCTT+AGG - Chr1:75929901-75929920 MsG0180004277.01.T01:intron 15.0%
!!! TTTTCTTAATTGATATATGT+AGG - Chr1:75931084-75931103 MsG0180004277.01.T01:CDS 15.0%
!!! TTTTTTCTTTCAGAATAAAT+TGG - Chr1:75935094-75935113 MsG0180004277.01.T01:CDS 15.0%
!! AATACCATAATAGAAAATCT+AGG + Chr1:75931310-75931329 None:intergenic 20.0%
!! AATGTAGTTGAAATTTGAAA+AGG + Chr1:75933137-75933156 None:intergenic 20.0%
!! AGATCATTATTCCTAATTAT+TGG - Chr1:75930576-75930595 MsG0180004277.01.T01:intron 20.0%
!! ATGTAGTTGAAATTTGAAAA+GGG + Chr1:75933136-75933155 None:intergenic 20.0%
!! ATTAAATGACAGGATTATTA+GGG - Chr1:75932608-75932627 MsG0180004277.01.T01:CDS 20.0%
!! ATTAAATTAAATCGTACTCT+TGG + Chr1:75930543-75930562 None:intergenic 20.0%
!! CAAAAAATTGTAACTGAAAA+TGG - Chr1:75932902-75932921 MsG0180004277.01.T01:CDS 20.0%
!! CTAGGTAAATATTTCATAAA+AGG - Chr1:75929640-75929659 MsG0180004277.01.T01:three_prime_UTR 20.0%
!! GAAAAATATGTGACATAATT+AGG + Chr1:75933183-75933202 None:intergenic 20.0%
!! GATCATTATTCCTAATTATT+GGG - Chr1:75930577-75930596 MsG0180004277.01.T01:intron 20.0%
!! TAATAGAAAATCTAGGAAAT+AGG + Chr1:75931303-75931322 None:intergenic 20.0%
!! TAATTATGCTGAGAATATTT+AGG - Chr1:75934967-75934986 MsG0180004277.01.T01:intron 20.0%
!! TCTATCATAGTATTTACTAT+AGG + Chr1:75933211-75933230 None:intergenic 20.0%
!! TTGGAGATTATGTAATAATA+TGG - Chr1:75932542-75932561 MsG0180004277.01.T01:intron 20.0%
!! TTTAGAAAATCCAAGATAAA+AGG + Chr1:75931878-75931897 None:intergenic 20.0%
!! TTTCATACCTAACAATATAA+AGG + Chr1:75930915-75930934 None:intergenic 20.0%
!!! AAATAAGTCTTGACTATTTT+GGG + Chr1:75934037-75934056 None:intergenic 20.0%
!!! AAATCAATACAAGTTTTAAC+TGG + Chr1:75931495-75931514 None:intergenic 20.0%
!!! AATAGTATTTTTACAAAAGC+CGG + Chr1:75929877-75929896 None:intergenic 20.0%
!!! ATTTCCTAGATTTTCTATTA+TGG - Chr1:75931303-75931322 MsG0180004277.01.T01:intron 20.0%
!!! CAAATGATTTTGTTAAACTA+AGG + Chr1:75930112-75930131 None:intergenic 20.0%
! AAACTTCCTGCATATTATTA+TGG + Chr1:75932575-75932594 None:intergenic 25.0%
! AAGCAGAAATTTCAATTATG+AGG + Chr1:75930078-75930097 None:intergenic 25.0%
! AATTATTTGTTCAATGCTCT+CGG - Chr1:75931185-75931204 MsG0180004277.01.T01:intron 25.0%
! ACTTAAATTGCTAATGGTAT+AGG - Chr1:75930204-75930223 MsG0180004277.01.T01:intron 25.0%
! ATAGTGAATTGAATGAAGTT+TGG - Chr1:75933758-75933777 MsG0180004277.01.T01:intron 25.0%
! ATGAGTATGAGTTAATATGT+AGG - Chr1:75930487-75930506 MsG0180004277.01.T01:intron 25.0%
! ATTCAAAATGGTTTCCTTTA+AGG + Chr1:75932795-75932814 None:intergenic 25.0%
! ATTCTGAATTCACTTTGATA+AGG - Chr1:75930873-75930892 MsG0180004277.01.T01:CDS 25.0%
! ATTGATATATGTAGGTTTCA+AGG - Chr1:75931092-75931111 MsG0180004277.01.T01:CDS 25.0%
! CATGAATTTGATAAACCTTA+CGG - Chr1:75933948-75933967 MsG0180004277.01.T01:intron 25.0%
! CATTAAATGACAGGATTATT+AGG - Chr1:75932607-75932626 MsG0180004277.01.T01:CDS 25.0%
! CTAAAAAGTAATAGAAGCTA+CGG + Chr1:75930644-75930663 None:intergenic 25.0%
! GAATTACTAATCTGAATGAT+TGG - Chr1:75930459-75930478 MsG0180004277.01.T01:intron 25.0%
! TAAATGGTGATAAGTGATAA+AGG + Chr1:75932173-75932192 None:intergenic 25.0%
! TACATATTAACTCATACTCA+TGG + Chr1:75930488-75930507 None:intergenic 25.0%
! TATCATTTATTCATTCCGTA+AGG + Chr1:75933966-75933985 None:intergenic 25.0%
! TGAAGTCTGAATATTCAAAA+TGG + Chr1:75932807-75932826 None:intergenic 25.0%
! TGATCTACTTAAATTGCTAA+TGG - Chr1:75930198-75930217 MsG0180004277.01.T01:intron 25.0%
! TTCAGATCCTTTATATTGTT+AGG - Chr1:75930905-75930924 MsG0180004277.01.T01:CDS 25.0%
! TTCATTCAATTCACTATTCT+CGG + Chr1:75933755-75933774 None:intergenic 25.0%
! TTGAATCATTTCTACAACAT+CGG + Chr1:75932252-75932271 None:intergenic 25.0%
! TTTATCACTTATCACCATTT+AGG - Chr1:75932172-75932191 MsG0180004277.01.T01:intron 25.0%
!! AAAATTTGGTAATTGCATTG+GGG - Chr1:75935003-75935022 MsG0180004277.01.T01:intron 25.0%
!! AAAGAATGCATTCTTTTACT+TGG - Chr1:75932218-75932237 MsG0180004277.01.T01:intron 25.0%
!! AAGAATGCATTCTTTTACTT+GGG - Chr1:75932219-75932238 MsG0180004277.01.T01:intron 25.0%
!! AATAAGTCTTGACTATTTTG+GGG + Chr1:75934036-75934055 None:intergenic 25.0%
!! AATGCAATTACCAAATTTTG+GGG + Chr1:75935002-75935021 None:intergenic 25.0%
!! AGTAAAAGAATGCATTCTTT+TGG + Chr1:75932218-75932237 None:intergenic 25.0%
!! ATAGCAATTTTCTCTAACAT+CGG + Chr1:75930308-75930327 None:intergenic 25.0%
!! CAAAATTTGGTAATTGCATT+GGG - Chr1:75935002-75935021 MsG0180004277.01.T01:intron 25.0%
!! CAATGCAATTACCAAATTTT+GGG + Chr1:75935003-75935022 None:intergenic 25.0%
!! CTAATAATCCTGTCATTTAA+TGG + Chr1:75932609-75932628 None:intergenic 25.0%
!! GAAATAAGTCTTGACTATTT+TGG + Chr1:75934038-75934057 None:intergenic 25.0%
!! TTATTATTGAAAGTGTGTGA+GGG - Chr1:75930276-75930295 MsG0180004277.01.T01:intron 25.0%
!! TTTAGCTGCTTTAATATGAA+AGG + Chr1:75929579-75929598 None:intergenic 25.0%
!! TTTATTATTGAAAGTGTGTG+AGG - Chr1:75930275-75930294 MsG0180004277.01.T01:intron 25.0%
!! TTTGGTATGTTTATGTGTTT+TGG - Chr1:75932304-75932323 MsG0180004277.01.T01:intron 25.0%
!!! AAGTAAGTCTTTTGTTGTTT+TGG - Chr1:75933469-75933488 MsG0180004277.01.T01:CDS 25.0%
!!! AGAGCATTGAACAAATAATT+TGG + Chr1:75931185-75931204 None:intergenic 25.0%
!!! AGTAAGTCTTTTGTTGTTTT+GGG - Chr1:75933470-75933489 MsG0180004277.01.T01:CDS 25.0%
!!! ATGATAGGATTTTTTCCTTT+TGG - Chr1:75933044-75933063 MsG0180004277.01.T01:CDS 25.0%
!!! ATTAGCCTTTATATGAAAGA+AGG - Chr1:75934676-75934695 MsG0180004277.01.T01:intron 25.0%
!!! GTTGTTAACATTTTATTTGG+CGG - Chr1:75935205-75935224 MsG0180004277.01.T01:CDS 25.0%
!!! TAAATTCATTTTTCCTCGTT+AGG - Chr1:75931894-75931913 MsG0180004277.01.T01:CDS 25.0%
!!! TATTCATTCAATTTTGGTAC+CGG - Chr1:75931401-75931420 MsG0180004277.01.T01:intron 25.0%
!!! TGTTATGGAGATTTTAGAAT+GGG - Chr1:75930400-75930419 MsG0180004277.01.T01:intron 25.0%
!!! TTGTTATGGAGATTTTAGAA+TGG - Chr1:75930399-75930418 MsG0180004277.01.T01:intron 25.0%
AAACACAAGATGAAGGAAAT+TGG + Chr1:75929672-75929691 None:intergenic 30.0%
AACATAAGTATCTAAGTGGT+AGG + Chr1:75932474-75932493 None:intergenic 30.0%
AAGGACTTATAAAGATCTAC+AGG - Chr1:75931212-75931231 MsG0180004277.01.T01:intron 30.0%
ACCGATCATATCATTATTTG+TGG - Chr1:75929537-75929556 MsG0180004277.01.T01:three_prime_UTR 30.0%
AGTTAATATGTAGGAGAATC+TGG - Chr1:75930496-75930515 MsG0180004277.01.T01:intron 30.0%
ATAATTATACTGCCAGCAAA+AGG - Chr1:75930161-75930180 MsG0180004277.01.T01:intron 30.0%
ATCTTGAAGGAATGACATAT+AGG - Chr1:75931608-75931627 MsG0180004277.01.T01:intron 30.0%
ATTATTAGGGAAAACATCGT+TGG - Chr1:75932621-75932640 MsG0180004277.01.T01:CDS 30.0%
CACAAGTTATAACCACAAAT+GGG - Chr1:75931953-75931972 MsG0180004277.01.T01:intron 30.0%
CACTTAGATACTTATGTTAC+TGG - Chr1:75932476-75932495 MsG0180004277.01.T01:CDS 30.0%
CAGCATAATTACAAAATGAC+CGG + Chr1:75934958-75934977 None:intergenic 30.0%
CAGTAACATAAGTATCTAAG+TGG + Chr1:75932478-75932497 None:intergenic 30.0%
CCCACAAATAATGATATGAT+CGG + Chr1:75929541-75929560 None:intergenic 30.0%
CCGATCATATCATTATTTGT+GGG - Chr1:75929538-75929557 MsG0180004277.01.T01:three_prime_UTR 30.0%
GACAAGAAAAAATCTCAAGA+GGG + Chr1:75933099-75933118 None:intergenic 30.0%
GATAAACGACAAATTAGTGA+GGG - Chr1:75933982-75934001 MsG0180004277.01.T01:intron 30.0%
GATACTTATGTTACTGGTAT+AGG - Chr1:75932482-75932501 MsG0180004277.01.T01:intron 30.0%
GATATGCAAGCAATTGAAAA+AGG + Chr1:75932848-75932867 None:intergenic 30.0%
GATTGTAGAATGTTTGATGA+TGG - Chr1:75933516-75933535 MsG0180004277.01.T01:CDS 30.0%
GCAGAATTTCATCATCATTT+GGG + Chr1:75931791-75931810 None:intergenic 30.0%
TAAATCCTGTCCCAATAATT+AGG + Chr1:75930590-75930609 None:intergenic 30.0%
TAACAAACCTCAACTATTGT+GGG + Chr1:75931000-75931019 None:intergenic 30.0%
TAATTATACTGCCAGCAAAA+GGG - Chr1:75930162-75930181 MsG0180004277.01.T01:intron 30.0%
TACTCTTCATGAGAGAAAAT+TGG + Chr1:75933244-75933263 None:intergenic 30.0%
TATACACTCACAAAAATGTG+TGG + Chr1:75932343-75932362 None:intergenic 30.0%
TATTCAGACTTCATTGAAGA+AGG - Chr1:75932814-75932833 MsG0180004277.01.T01:intron 30.0%
TCAACATTGTCCTATACTTA+AGG - Chr1:75933332-75933351 MsG0180004277.01.T01:intron 30.0%
TCAAGTGATTTCAGTTCAAA+CGG + Chr1:75930241-75930260 None:intergenic 30.0%
TCACTAACATCTAAGTCATA+GGG - Chr1:75930337-75930356 MsG0180004277.01.T01:intron 30.0%
TCTCTCCTTCTTTCATATAA+AGG + Chr1:75934684-75934703 None:intergenic 30.0%
TCTTACTTTACTCAATTCGA+TGG + Chr1:75932034-75932053 None:intergenic 30.0%
TGAATCATTTCTACAACATC+GGG + Chr1:75932251-75932270 None:intergenic 30.0%
TGATAAACGACAAATTAGTG+AGG - Chr1:75933981-75934000 MsG0180004277.01.T01:intron 30.0%
TGCAGAATTTCATCATCATT+TGG + Chr1:75931792-75931811 None:intergenic 30.0%
TGGCTTATTAGTATTCTGAA+GGG + Chr1:75931935-75931954 None:intergenic 30.0%
TTATTCCTAATTATTGGGAC+AGG - Chr1:75930582-75930601 MsG0180004277.01.T01:intron 30.0%
TTCCAAGAAAACAGATTGAT+AGG - Chr1:75929763-75929782 MsG0180004277.01.T01:CDS 30.0%
TTCTGACCATAATAATATGC+AGG - Chr1:75932566-75932585 MsG0180004277.01.T01:intron 30.0%
TTGTGCTTCTTACTATAGAT+TGG - Chr1:75932749-75932768 MsG0180004277.01.T01:CDS 30.0%
! ATCCTATCAATCTGTTTTCT+TGG + Chr1:75929768-75929787 None:intergenic 30.0%
! ATTTCCTTCTTTTGTCAAAC+CGG - Chr1:75929855-75929874 MsG0180004277.01.T01:intron 30.0%
! CCAAAATTTGGTAATTGCAT+TGG - Chr1:75935001-75935020 MsG0180004277.01.T01:intron 30.0%
! CCAATGCAATTACCAAATTT+TGG + Chr1:75935004-75935023 None:intergenic 30.0%
! CTGAAGTAGATTGAGATTTT+TGG - Chr1:75931454-75931473 MsG0180004277.01.T01:intron 30.0%
! GAAAAGGGTCTTATAAAAAG+AGG + Chr1:75933121-75933140 None:intergenic 30.0%
! GAAGACTGATTAAGGTTTTA+TGG + Chr1:75932373-75932392 None:intergenic 30.0%
! TAATAACCTTTCCCATTTTC+AGG - Chr1:75934846-75934865 MsG0180004277.01.T01:intron 30.0%
! TGACATAATTAGGAGTATGT+TGG + Chr1:75933173-75933192 None:intergenic 30.0%
! TTAATCTTTTGTCCTCTTCT+CGG - Chr1:75933645-75933664 MsG0180004277.01.T01:intron 30.0%
! TTTCTGAGAGAGCATATTTA+AGG - Chr1:75934722-75934741 MsG0180004277.01.T01:intron 30.0%
!!! GCTTTAGCTTTTAATTGTTG+TGG - Chr1:75933672-75933691 MsG0180004277.01.T01:intron 30.0%
!!! GTAGAAGTTTTTAGTATGAC+TGG - Chr1:75933360-75933379 MsG0180004277.01.T01:intron 30.0%
AAAACAACTCGAGCTATCTA+TGG + Chr1:75930825-75930844 None:intergenic 35.0%
AAACATACCAAAACACTTCC+AGG + Chr1:75932296-75932315 None:intergenic 35.0%
AAAGACATACTAGATGCAGA+GGG - Chr1:75933781-75933800 MsG0180004277.01.T01:intron 35.0%
AACAAACCTCAACTATTGTG+GGG + Chr1:75930999-75931018 None:intergenic 35.0%
AATGGGAAAGAAGGAAAAGA+TGG - Chr1:75931970-75931989 MsG0180004277.01.T01:intron 35.0%
AATTATACTGCCAGCAAAAG+GGG - Chr1:75930163-75930182 MsG0180004277.01.T01:intron 35.0%
ACTAGAACATGATTCAGTTG+AGG - Chr1:75934368-75934387 MsG0180004277.01.T01:intron 35.0%
ACTTCAACAAGTCACATGTT+TGG + Chr1:75931120-75931139 None:intergenic 35.0%
ATAACCACAAATGGGAAAGA+AGG - Chr1:75931961-75931980 MsG0180004277.01.T01:intron 35.0%
ATATTAGCAGTGAAGTCACT+AGG + Chr1:75930722-75930741 None:intergenic 35.0%
ATATTGATCTCCTTAGCAAG+AGG - Chr1:75929817-75929836 MsG0180004277.01.T01:intron 35.0%
ATCATTATTCCTTCTAGGCT+TGG + Chr1:75934133-75934152 None:intergenic 35.0%
ATCTACTCATGTTGTGATTG+TGG - Chr1:75933828-75933847 MsG0180004277.01.T01:intron 35.0%
CAATGTCATGTATCTTCTGA+TGG + Chr1:75932525-75932544 None:intergenic 35.0%
CACTAACATCTAAGTCATAG+GGG - Chr1:75930338-75930357 MsG0180004277.01.T01:intron 35.0%
CATCAGAAGATACATGACAT+TGG - Chr1:75932523-75932542 MsG0180004277.01.T01:intron 35.0%
CATTGTCCTATACTTAAGGA+CGG - Chr1:75933336-75933355 MsG0180004277.01.T01:intron 35.0%
CCACAAGTTATAACCACAAA+TGG - Chr1:75931952-75931971 MsG0180004277.01.T01:intron 35.0%
CCATTTGTGGTTATAACTTG+TGG + Chr1:75931955-75931974 None:intergenic 35.0%
CTTCAACAAGTCACATGTTT+GGG + Chr1:75931119-75931138 None:intergenic 35.0%
CTTCAACCAATTCCAGATAT+GGG - Chr1:75930967-75930986 MsG0180004277.01.T01:intron 35.0%
CTTGCATATCTGACAAAGAT+TGG - Chr1:75932858-75932877 MsG0180004277.01.T01:intron 35.0%
GAAAATATCTGCGACAAACT+TGG - Chr1:75932998-75933017 MsG0180004277.01.T01:intron 35.0%
GAAATTCTGACCCCAAAATT+TGG - Chr1:75934989-75935008 MsG0180004277.01.T01:intron 35.0%
GAATTTCATCATCATTTGGG+TGG + Chr1:75931788-75931807 None:intergenic 35.0%
GATTGAATTGGCTGTTATGT+AGG - Chr1:75933401-75933420 MsG0180004277.01.T01:intron 35.0%
GCAATCAAAACACAAGATGA+AGG + Chr1:75929679-75929698 None:intergenic 35.0%
GCTAGGAAACATTCAAATAG+AGG + Chr1:75933915-75933934 None:intergenic 35.0%
GGACAAGAAAAAATCTCAAG+AGG + Chr1:75933100-75933119 None:intergenic 35.0%
GGATCATCATTATTCCTTCT+AGG + Chr1:75934138-75934157 None:intergenic 35.0%
GGGTGATGAAATATATGTGA+AGG - Chr1:75933801-75933820 MsG0180004277.01.T01:intron 35.0%
GTAACAAACCTCAACTATTG+TGG + Chr1:75931001-75931020 None:intergenic 35.0%
GTATGTAATCATTACGACTG+TGG - Chr1:75933865-75933884 MsG0180004277.01.T01:intron 35.0%
GTCACTAACATCTAAGTCAT+AGG - Chr1:75930336-75930355 MsG0180004277.01.T01:intron 35.0%
GTGGCTTATTAGTATTCTGA+AGG + Chr1:75931936-75931955 None:intergenic 35.0%
GTTCTTCTTCACATAACCTA+TGG + Chr1:75934758-75934777 None:intergenic 35.0%
TACAATGCATACTTAATCCC+CGG + Chr1:75934602-75934621 None:intergenic 35.0%
TACTCATCGTTGGATTGAAT+TGG - Chr1:75933389-75933408 MsG0180004277.01.T01:intron 35.0%
TATGTCATTCCTTCAAGATC+AGG + Chr1:75931607-75931626 None:intergenic 35.0%
TCAACTAGCAAGTGTATGTT+TGG - Chr1:75934062-75934081 MsG0180004277.01.T01:intron 35.0%
TCTGCAAAAACAAAAGTCAG+TGG + Chr1:75932932-75932951 None:intergenic 35.0%
TGATTACCTGAAAATGGGAA+AGG + Chr1:75934855-75934874 None:intergenic 35.0%
TTATTTCAGGCTGTTGTATG+TGG - Chr1:75931735-75931754 MsG0180004277.01.T01:intron 35.0%
TTCACATGGTTTACCAAACA+TGG - Chr1:75934193-75934212 MsG0180004277.01.T01:intron 35.0%
TTGCTCGTGATACACTAATT+TGG - Chr1:75934269-75934288 MsG0180004277.01.T01:intron 35.0%
TTGGAAGATCAGACATAAGA+AGG + Chr1:75929749-75929768 None:intergenic 35.0%
! AATGCATTCTTTTACTTGGG+TGG - Chr1:75932222-75932241 MsG0180004277.01.T01:intron 35.0%
! ACTGTGGCGAACATAATTTT+GGG - Chr1:75934090-75934109 MsG0180004277.01.T01:intron 35.0%
! AGAATGTTCGAGTTTCTCAT+AGG - Chr1:75932658-75932677 MsG0180004277.01.T01:CDS 35.0%
! AGTGTCTGCTTAAGTTGTTA+TGG - Chr1:75930385-75930404 MsG0180004277.01.T01:intron 35.0%
! ATGTCGTTTCATTTCTATGC+AGG - Chr1:75929712-75929731 MsG0180004277.01.T01:exon 35.0%
! ATTGATAGTCATATCTGAGC+TGG - Chr1:75934921-75934940 MsG0180004277.01.T01:CDS 35.0%
! CAAGAGTATGAGAACTATCT+CGG - Chr1:75932269-75932288 MsG0180004277.01.T01:intron 35.0%
! CATATCTGGAATTGGTTGAA+GGG + Chr1:75930968-75930987 None:intergenic 35.0%
! GAATGTTCGAGTTTCTCATA+GGG - Chr1:75932659-75932678 MsG0180004277.01.T01:CDS 35.0%
! GACAATGTTGACTAAATCAG+AGG + Chr1:75933323-75933342 None:intergenic 35.0%
! GTGGTAGGATATTGCATTTT+CGG + Chr1:75932459-75932478 None:intergenic 35.0%
! GTTTGAAGCAAAGCTGTAAA+AGG + Chr1:75934159-75934178 None:intergenic 35.0%
! TACTGTGGCGAACATAATTT+TGG - Chr1:75934089-75934108 MsG0180004277.01.T01:intron 35.0%
! TGTATGTTTGGAACTTACTG+TGG - Chr1:75934074-75934093 MsG0180004277.01.T01:intron 35.0%
! TTTTCCTTCTTTCCCATTTG+TGG + Chr1:75931968-75931987 None:intergenic 35.0%
!! GGAAGTATATTTTCCCATTC+CGG + Chr1:75931767-75931786 None:intergenic 35.0%
!! GTTAACATTTTATTTGGCGG+CGG - Chr1:75935208-75935227 MsG0180004277.01.T01:CDS 35.0%
!! TGACTTGTTGAAGTCAATCT+CGG - Chr1:75931126-75931145 MsG0180004277.01.T01:intron 35.0%
!! TGGGTTGATTACCTGAAAAT+GGG + Chr1:75934860-75934879 None:intergenic 35.0%
!! TTAACATTTTATTTGGCGGC+GGG - Chr1:75935209-75935228 MsG0180004277.01.T01:CDS 35.0%
!! TTGGGTTGATTACCTGAAAA+TGG + Chr1:75934861-75934880 None:intergenic 35.0%
!!! AGTTTTTAGTATGACTGGAG+AGG - Chr1:75933365-75933384 MsG0180004277.01.T01:intron 35.0%
!!! ATGGAGATTTTAGAATGGGT+GGG - Chr1:75930404-75930423 MsG0180004277.01.T01:intron 35.0%
!!! TATGGAGATTTTAGAATGGG+TGG - Chr1:75930403-75930422 MsG0180004277.01.T01:intron 35.0%
!!! TCATCTTGTGTTTTGATTGC+TGG - Chr1:75929679-75929698 MsG0180004277.01.T01:three_prime_UTR 35.0%
AATGACCTTGAGCAGTTACA+AGG + Chr1:75933627-75933646 None:intergenic 40.0%
ACACCGGAATAGATATGTGT+AGG + Chr1:75931530-75931549 None:intergenic 40.0%
ACCAAGAGGAAGACTGATTA+AGG + Chr1:75932381-75932400 None:intergenic 40.0%
ACCTTAATCAGTCTTCCTCT+TGG - Chr1:75932377-75932396 MsG0180004277.01.T01:intron 40.0%
ACTATAGATTGGAAACCCCA+TGG - Chr1:75932760-75932779 MsG0180004277.01.T01:intron 40.0%
AGAGAGAGAGAGCTGAAAAT+TGG - Chr1:75930437-75930456 MsG0180004277.01.T01:intron 40.0%
AGAGTAATATGCAAAGGCTC+AGG - Chr1:75929487-75929506 MsG0180004277.01.T01:three_prime_UTR 40.0%
AGCAGATAGCTTATCTGTCT+TGG + Chr1:75932960-75932979 None:intergenic 40.0%
AGTAATAGAAGCTACGGTCT+AGG + Chr1:75930638-75930657 None:intergenic 40.0%
AGTCAGTCAATTCAAGAGAG+AGG + Chr1:75934900-75934919 None:intergenic 40.0%
ATACACTAATTTGGCAGGCA+TGG - Chr1:75934278-75934297 MsG0180004277.01.T01:intron 40.0%
ATAGTCATATCTGAGCTGGA+AGG - Chr1:75934925-75934944 MsG0180004277.01.T01:CDS 40.0%
ATATGCTCTCTCAGAAAGCT+CGG + Chr1:75934719-75934738 None:intergenic 40.0%
ATCACGAGCAAAGCTAACAA+TGG + Chr1:75934260-75934279 None:intergenic 40.0%
ATCATAACAAACGACCAACC+GGG - Chr1:75934581-75934600 MsG0180004277.01.T01:intron 40.0%
CACCGGAATAGATATGTGTA+GGG + Chr1:75931529-75931548 None:intergenic 40.0%
CATCATAACAAACGACCAAC+CGG - Chr1:75934580-75934599 MsG0180004277.01.T01:intron 40.0%
CATGCACGAAATTTCATGCT+AGG + Chr1:75933932-75933951 None:intergenic 40.0%
CCAATGAACAATACCTAACG+AGG + Chr1:75931910-75931929 None:intergenic 40.0%
CCTTCAACCAATTCCAGATA+TGG - Chr1:75930966-75930985 MsG0180004277.01.T01:intron 40.0%
CGCAACAGAGTAATATGCAA+AGG - Chr1:75929481-75929500 MsG0180004277.01.T01:three_prime_UTR 40.0%
CTGTTGTATGTGGTCTTTAC+CGG - Chr1:75931745-75931764 MsG0180004277.01.T01:intron 40.0%
GAAAGACATACTAGATGCAG+AGG - Chr1:75933780-75933799 MsG0180004277.01.T01:intron 40.0%
GAGTAATATGCAAAGGCTCA+GGG - Chr1:75929488-75929507 MsG0180004277.01.T01:three_prime_UTR 40.0%
GTCAGTCAATTCAAGAGAGA+GGG + Chr1:75934899-75934918 None:intergenic 40.0%
TACACTAATTTGGCAGGCAT+GGG - Chr1:75934279-75934298 MsG0180004277.01.T01:intron 40.0%
TATGTGGTCTTTACCGGAAT+GGG - Chr1:75931751-75931770 MsG0180004277.01.T01:intron 40.0%
TCAGAAAGCTCGGAAAATGA+TGG + Chr1:75934709-75934728 None:intergenic 40.0%
TCAGTCAATTCAAGAGAGAG+GGG + Chr1:75934898-75934917 None:intergenic 40.0%
TCGTGATACACTAATTTGGC+AGG - Chr1:75934273-75934292 MsG0180004277.01.T01:intron 40.0%
TCTACTCCGTCCTTAAGTAT+AGG + Chr1:75933345-75933364 None:intergenic 40.0%
TGCCCTACACATATCTATTC+CGG - Chr1:75931524-75931543 MsG0180004277.01.T01:intron 40.0%
TTAAGGAGAGAAGTAGCCAT+AGG - Chr1:75934739-75934758 MsG0180004277.01.T01:intron 40.0%
TTAGGATTGCTCAGTGCATT+GGG - Chr1:75929919-75929938 MsG0180004277.01.T01:CDS 40.0%
TTGGATGCAACATCTTCTAC+TGG + Chr1:75931166-75931185 None:intergenic 40.0%
TTGTAACCCTCTGATTTCCA+GGG + Chr1:75934475-75934494 None:intergenic 40.0%
TTTACTTGCCTCGTAGTGTT+CGG - Chr1:75930793-75930812 MsG0180004277.01.T01:intron 40.0%
TTTCGATTTCTCGGATGAGT+TGG - Chr1:75931424-75931443 MsG0180004277.01.T01:intron 40.0%
! ACAGAACCCATATCTGGAAT+TGG + Chr1:75930976-75930995 None:intergenic 40.0%
! ACTTGTTGAAGTCAATCTCG+GGG - Chr1:75931128-75931147 MsG0180004277.01.T01:intron 40.0%
! CCATATCTGGAATTGGTTGA+AGG + Chr1:75930969-75930988 None:intergenic 40.0%
! CCTCGTTAGGTATTGTTCAT+TGG - Chr1:75931907-75931926 MsG0180004277.01.T01:intron 40.0%
! CGCAGATATTTTCTGCAAGT+AGG + Chr1:75932991-75933010 None:intergenic 40.0%
! GCTCTAGGTTATTCGATCTA+GGG - Chr1:75930683-75930702 MsG0180004277.01.T01:intron 40.0%
! GGTTTACCAAACATGGACTA+AGG - Chr1:75934200-75934219 MsG0180004277.01.T01:intron 40.0%
! GTCGTGTCTACCTTTTATCT+TGG - Chr1:75931865-75931884 MsG0180004277.01.T01:CDS 40.0%
!! AAAGCCGGTTTGACAAAAGA+AGG + Chr1:75929862-75929881 None:intergenic 40.0%
!! AGCTCTAGGTTATTCGATCT+AGG - Chr1:75930682-75930701 MsG0180004277.01.T01:intron 40.0%
!! AGGGGTTCTGACTTTGAAAT+TGG + Chr1:75934880-75934899 None:intergenic 40.0%
!! GACTTGTTGAAGTCAATCTC+GGG - Chr1:75931127-75931146 MsG0180004277.01.T01:intron 40.0%
!! GGGGTTCTGACTTTGAAATT+GGG + Chr1:75934879-75934898 None:intergenic 40.0%
!! TCTGACAAAGATTGGCTTCT+TGG - Chr1:75932866-75932885 MsG0180004277.01.T01:CDS 40.0%
!! TTATTGTTTTGCGGACCAAG+AGG + Chr1:75932395-75932414 None:intergenic 40.0%
AAACGTTCGCTTGCTTCACA+TGG - Chr1:75934179-75934198 MsG0180004277.01.T01:intron 45.0%
AATATGCAAAGGCTCAGGGA+GGG - Chr1:75929492-75929511 MsG0180004277.01.T01:three_prime_UTR 45.0%
ACCTTGGAACCAGATCTGTT+AGG + Chr1:75932078-75932097 None:intergenic 45.0%
ATCACCATTTAGGCAGCAGA+CGG - Chr1:75932182-75932201 MsG0180004277.01.T01:intron 45.0%
ATGCATACTTAATCCCCGGT+TGG + Chr1:75934598-75934617 None:intergenic 45.0%
CACACTCCTTAGTCCATGTT+TGG + Chr1:75934209-75934228 None:intergenic 45.0%
CAGAACAGCAAGTCATACCT+TGG + Chr1:75932094-75932113 None:intergenic 45.0%
CAGAGACGCCATTAAATGAC+AGG - Chr1:75932598-75932617 MsG0180004277.01.T01:CDS 45.0%
CATTTCCCCTGGAAATCAGA+GGG - Chr1:75934466-75934485 MsG0180004277.01.T01:intron 45.0%
CTCATCCGAGAAATCGAAAC+CGG + Chr1:75931423-75931442 None:intergenic 45.0%
CTTAGGATTGCTCAGTGCAT+TGG - Chr1:75929918-75929937 MsG0180004277.01.T01:CDS 45.0%
GCAAGTAAACAGTCGATGGA+TGG + Chr1:75930782-75930801 None:intergenic 45.0%
GCAGCATTGCAGTTAACTCA+AGG - Chr1:75934628-75934647 MsG0180004277.01.T01:intron 45.0%
GGAATTAACCGAACACTACG+AGG + Chr1:75930804-75930823 None:intergenic 45.0%
GTATGTGGTCTTTACCGGAA+TGG - Chr1:75931750-75931769 MsG0180004277.01.T01:intron 45.0%
GTTGTAACCCTCTGATTTCC+AGG + Chr1:75934476-75934495 None:intergenic 45.0%
TAATATGCAAAGGCTCAGGG+AGG - Chr1:75929491-75929510 MsG0180004277.01.T01:three_prime_UTR 45.0%
TATATCGTGTCAGCAGCTCT+AGG - Chr1:75930668-75930687 MsG0180004277.01.T01:intron 45.0%
TATGAGAACTATCTCGGTCC+TGG - Chr1:75932275-75932294 MsG0180004277.01.T01:intron 45.0%
TCATAACAAACGACCAACCG+GGG - Chr1:75934582-75934601 MsG0180004277.01.T01:intron 45.0%
TGAGGATGAATCGTTCTGAC+TGG - Chr1:75934386-75934405 MsG0180004277.01.T01:intron 45.0%
TGGTAATCCGGAGTTCAACT+GGG + Chr1:75934441-75934460 None:intergenic 45.0%
TGTAACCCTCTGATTTCCAG+GGG + Chr1:75934474-75934493 None:intergenic 45.0%
TTCTGTCCCCACAATAGTTG+AGG - Chr1:75930990-75931009 MsG0180004277.01.T01:intron 45.0%
! ATTGGAAACCCCATGGACTA+CGG - Chr1:75932767-75932786 MsG0180004277.01.T01:intron 45.0%
! GGAAATGGACTCTGGTAATC+CGG + Chr1:75934453-75934472 None:intergenic 45.0%
! TCCTAACAGATCTGGTTCCA+AGG - Chr1:75932074-75932093 MsG0180004277.01.T01:CDS 45.0%
! TTGAGCCTTGTAACTGCTCA+AGG - Chr1:75933619-75933638 MsG0180004277.01.T01:intron 45.0%
! TTTCGACGAGTGCTATTCTG+CGG - Chr1:75932128-75932147 MsG0180004277.01.T01:intron 45.0%
!! CGGTTGGTCGTTTGTTATGA+TGG + Chr1:75934582-75934601 None:intergenic 45.0%
!! GACAAAGATTGGCTTCTTGG+AGG - Chr1:75932869-75932888 MsG0180004277.01.T01:CDS 45.0%
!! TGGTACCGGTTTCGATTTCT+CGG - Chr1:75931415-75931434 MsG0180004277.01.T01:intron 45.0%
!! TTTAAGGTGCCGTAGTCCAT+GGG + Chr1:75932779-75932798 None:intergenic 45.0%
AGCAGTGAAGTCACTAGGAG+AGG + Chr1:75930717-75930736 None:intergenic 50.0%
ATCAGTGACCTATGTTGCGG+CGG - Chr1:75933588-75933607 MsG0180004277.01.T01:intron 50.0%
ATTCCCGTCTGCTGCCTAAA+TGG + Chr1:75932189-75932208 None:intergenic 50.0%
CCATTTCCCCTGGAAATCAG+AGG - Chr1:75934465-75934484 MsG0180004277.01.T01:intron 50.0%
CCTCTGATTTCCAGGGGAAA+TGG + Chr1:75934468-75934487 None:intergenic 50.0%
CGAGGCAAGTAAACAGTCGA+TGG + Chr1:75930786-75930805 None:intergenic 50.0%
CTGCGACAAACTTGGAGTCA+AGG - Chr1:75933006-75933025 MsG0180004277.01.T01:intron 50.0%
CTGGAGAGGATACTCATCGT+TGG - Chr1:75933379-75933398 MsG0180004277.01.T01:intron 50.0%
CTGGTAATCCGGAGTTCAAC+TGG + Chr1:75934442-75934461 None:intergenic 50.0%
CTTACCTCCCAGTTGAACTC+CGG - Chr1:75934431-75934450 MsG0180004277.01.T01:intron 50.0%
GCAGTGAAGTCACTAGGAGA+GGG + Chr1:75930716-75930735 None:intergenic 50.0%
GCCATCAGTGACCTATGTTG+CGG - Chr1:75933585-75933604 MsG0180004277.01.T01:intron 50.0%
GCTAAAGCTCAACCGAGAAG+AGG + Chr1:75933660-75933679 None:intergenic 50.0%
GTAACGCGTCCTAACAGATC+TGG - Chr1:75932066-75932085 MsG0180004277.01.T01:CDS 50.0%
GTTCAATGCTCTCGGCAGAA+AGG - Chr1:75931193-75931212 MsG0180004277.01.T01:intron 50.0%
TAATCCGGAGTTCAACTGGG+AGG + Chr1:75934438-75934457 None:intergenic 50.0%
TACTGCCAGCAAAAGGGGAT+CGG - Chr1:75930168-75930187 MsG0180004277.01.T01:intron 50.0%
TATTTCCTCCGCCGCAACAT+AGG + Chr1:75933599-75933618 None:intergenic 50.0%
TCACCATTTAGGCAGCAGAC+GGG - Chr1:75932183-75932202 MsG0180004277.01.T01:intron 50.0%
TGCAAAGCTCCAAGCCTAGA+AGG - Chr1:75934121-75934140 MsG0180004277.01.T01:intron 50.0%
TGCAGCTTGCCTGATCTTGA+AGG - Chr1:75931595-75931614 MsG0180004277.01.T01:intron 50.0%
TTACCAGAGTCCATTTCCCC+TGG - Chr1:75934455-75934474 MsG0180004277.01.T01:intron 50.0%
! ACTTACCGATCCCCTTTTGC+TGG + Chr1:75930176-75930195 None:intergenic 50.0%
! CATGGACTACGGCACCTTAA+AGG - Chr1:75932778-75932797 MsG0180004277.01.T01:intron 50.0%
! GGGAGCACAAATGCAAGTCA+TGG - Chr1:75929512-75929531 MsG0180004277.01.T01:three_prime_UTR 50.0%
! TTCGACGAGTGCTATTCTGC+GGG - Chr1:75932129-75932148 MsG0180004277.01.T01:intron 50.0%
! TTTCCAGGGGAAATGGACTC+TGG + Chr1:75934461-75934480 None:intergenic 50.0%
!! AGCGTCGATACCTCTTGCTA+AGG + Chr1:75929830-75929849 None:intergenic 50.0%
!! CTTTAAGGTGCCGTAGTCCA+TGG + Chr1:75932780-75932799 None:intergenic 50.0%
!! TAGCAAGAGGTATCGACGCT+GGG - Chr1:75929830-75929849 MsG0180004277.01.T01:intron 50.0%
!! TTAAGGTGCCGTAGTCCATG+GGG + Chr1:75932778-75932797 None:intergenic 50.0%
!! TTAGCAAGAGGTATCGACGC+TGG - Chr1:75929829-75929848 MsG0180004277.01.T01:intron 50.0%
!!! TCTCGGTCCTGGAAGTGTTT+TGG - Chr1:75932286-75932305 MsG0180004277.01.T01:intron 50.0%
ACCTAGCTGAAGCAGTGCCT+AGG + Chr1:75929626-75929645 None:intergenic 55.0%
GCCGCAACATAGGTCACTGA+TGG + Chr1:75933589-75933608 None:intergenic 55.0%
GTGGGGACAGAACCCATATC+TGG + Chr1:75930982-75931001 None:intergenic 55.0%
TAGGCAGCAGACGGGAATGT+AGG - Chr1:75932191-75932210 MsG0180004277.01.T01:intron 55.0%
TGAGCTGGAAGGTGAACAGC+CGG - Chr1:75934936-75934955 MsG0180004277.01.T01:CDS 55.0%
!! CACGAGTTTGCTGTTCGCCT+AGG - Chr1:75929606-75929625 MsG0180004277.01.T01:three_prime_UTR 55.0%
AGTGACCTATGTTGCGGCGG+AGG - Chr1:75933591-75933610 MsG0180004277.01.T01:intron 60.0%
! GCCTAGGCACTGCTTCAGCT+AGG - Chr1:75929622-75929641 MsG0180004277.01.T01:three_prime_UTR 60.0%
Chromosome Type Strat End Strand Name
Chr1 gene 75929462 75935228 75929462 ID=MsG0180004277.01;Name=MsG0180004277.01
Chr1 mRNA 75929462 75935228 75929462 ID=MsG0180004277.01.T01;Parent=MsG0180004277.01;Name=MsG0180004277.01.T01;_AED=0.44;_eAED=0.44;_QI=0|0.93|0.88|1|0.93|0.94|17|259|585
Chr1 exon 75929462 75929822 75929462 ID=MsG0180004277.01.T01:exon:14740;Parent=MsG0180004277.01.T01
Chr1 exon 75929907 75930017 75929907 ID=MsG0180004277.01.T01:exon:14739;Parent=MsG0180004277.01.T01
Chr1 exon 75930868 75930941 75930868 ID=MsG0180004277.01.T01:exon:14738;Parent=MsG0180004277.01.T01
Chr1 exon 75931050 75931119 75931050 ID=MsG0180004277.01.T01:exon:14737;Parent=MsG0180004277.01.T01
Chr1 exon 75931220 75931267 75931220 ID=MsG0180004277.01.T01:exon:14736;Parent=MsG0180004277.01.T01
Chr1 exon 75931663 75931739 75931663 ID=MsG0180004277.01.T01:exon:14735;Parent=MsG0180004277.01.T01
Chr1 exon 75931800 75931923 75931800 ID=MsG0180004277.01.T01:exon:14734;Parent=MsG0180004277.01.T01
Chr1 exon 75932010 75932102 75932010 ID=MsG0180004277.01.T01:exon:14733;Parent=MsG0180004277.01.T01
Chr1 exon 75932383 75932496 75932383 ID=MsG0180004277.01.T01:exon:14732;Parent=MsG0180004277.01.T01
Chr1 exon 75932595 75932774 75932595 ID=MsG0180004277.01.T01:exon:14731;Parent=MsG0180004277.01.T01
Chr1 exon 75932866 75932946 75932866 ID=MsG0180004277.01.T01:exon:14730;Parent=MsG0180004277.01.T01
Chr1 exon 75933036 75933112 75933036 ID=MsG0180004277.01.T01:exon:14729;Parent=MsG0180004277.01.T01
Chr1 exon 75933437 75933584 75933437 ID=MsG0180004277.01.T01:exon:14728;Parent=MsG0180004277.01.T01
Chr1 exon 75933679 75933763 75933679 ID=MsG0180004277.01.T01:exon:14727;Parent=MsG0180004277.01.T01
Chr1 exon 75934501 75934587 75934501 ID=MsG0180004277.01.T01:exon:14726;Parent=MsG0180004277.01.T01
Chr1 exon 75934852 75934956 75934852 ID=MsG0180004277.01.T01:exon:14725;Parent=MsG0180004277.01.T01
Chr1 exon 75935047 75935228 75935047 ID=MsG0180004277.01.T01:exon:14724;Parent=MsG0180004277.01.T01
Chr1 CDS 75935047 75935228 75935047 ID=MsG0180004277.01.T01:cds;Parent=MsG0180004277.01.T01
Chr1 CDS 75934852 75934956 75934852 ID=MsG0180004277.01.T01:cds;Parent=MsG0180004277.01.T01
Chr1 CDS 75934501 75934587 75934501 ID=MsG0180004277.01.T01:cds;Parent=MsG0180004277.01.T01
Chr1 CDS 75933679 75933763 75933679 ID=MsG0180004277.01.T01:cds;Parent=MsG0180004277.01.T01
Chr1 CDS 75933437 75933584 75933437 ID=MsG0180004277.01.T01:cds;Parent=MsG0180004277.01.T01
Chr1 CDS 75933036 75933112 75933036 ID=MsG0180004277.01.T01:cds;Parent=MsG0180004277.01.T01
Chr1 CDS 75932866 75932946 75932866 ID=MsG0180004277.01.T01:cds;Parent=MsG0180004277.01.T01
Chr1 CDS 75932595 75932774 75932595 ID=MsG0180004277.01.T01:cds;Parent=MsG0180004277.01.T01
Chr1 CDS 75932383 75932496 75932383 ID=MsG0180004277.01.T01:cds;Parent=MsG0180004277.01.T01
Chr1 CDS 75932010 75932102 75932010 ID=MsG0180004277.01.T01:cds;Parent=MsG0180004277.01.T01
Chr1 CDS 75931800 75931923 75931800 ID=MsG0180004277.01.T01:cds;Parent=MsG0180004277.01.T01
Chr1 CDS 75931663 75931739 75931663 ID=MsG0180004277.01.T01:cds;Parent=MsG0180004277.01.T01
Chr1 CDS 75931220 75931267 75931220 ID=MsG0180004277.01.T01:cds;Parent=MsG0180004277.01.T01
Chr1 CDS 75931050 75931119 75931050 ID=MsG0180004277.01.T01:cds;Parent=MsG0180004277.01.T01
Chr1 CDS 75930868 75930941 75930868 ID=MsG0180004277.01.T01:cds;Parent=MsG0180004277.01.T01
Chr1 CDS 75929907 75930017 75929907 ID=MsG0180004277.01.T01:cds;Parent=MsG0180004277.01.T01
Chr1 CDS 75929721 75929822 75929721 ID=MsG0180004277.01.T01:cds;Parent=MsG0180004277.01.T01
Chr1 three_prime_UTR 75929462 75929720 75929462 ID=MsG0180004277.01.T01:three_prime_utr;Parent=MsG0180004277.01.T01
Gene Sequence

>MsG0180004277.01.T01

ATGTCAACAATTGAATCTTCGCAACAGAGTAATATGCAAAGGCTCAGGGAGGGAGCACAAATGCAAGTCATGGAGACCGATCATATCATTATTTGTGGGATGAATAGTCATCTTCCTTTCATATTAAAGCAGCTAAATAAGTATCACGAGTTTGCTGTTCGCCTAGGCACTGCTTCAGCTAGGAAACAAAGAATCCTTCTTATGTCTGATCTTCCAAGAAAACAGATTGATAGGATAGCTGACAGTATTGCTAAAGATTTGTATCATATTGATCTCCTTAGCAAGAGTTGCACCCTTAGTTTAACAAAATCATTTGAAAGAGCAGCAGCAAACAAAGCACGAGCAATAATTATACTGCCAGCAAAAGGGGATCGGTATGAAATTGACACAGATGCATTTCTTACTGTTTTAGCCCTTCAACCAATTCCAGATATGGGTTCTGTCCCCACAATAGTTGAGGTTTCAAGGTCCCAAACATGTGACTTGTTGAAGTCAATCTCGGGGTTGAAAGTATCTCCAGTAGAAGATGTTGCATCCAAATTATTTGTTCAATGCTCTCGGCAGAAAGGACTTATAAAGATCTACAGGCACTTGCTAAATTATCGAAAAAATGTGTTCAATCTTTGCAGCTTGCCTGATCTTGAAGGAATGACATATAGGCAAATAAGACATATATTTAAAGACGCTGTTGTATGTGGTCTTTACCGGAATGGGAAAATATACTTCCACCCAAATGATGATGAAATTCTGCAGATAACTGATAAAGTATTGTTCATTGGATCCCTTCAGAATACTAATAAGCCACAAGTTATAACCACAAATGGGAAAGAAGGAAAAGATGGTCATAACAATGAATTACTTGAAAAAGATTTTGATTATGCCATCGAATTGAGTAAAGTAAGACTTGCAAATATTGTAACGCGTCCTAACAGATCTGGTTCCAAGGCAGCAGACGGGAATGTAGGACCAAAAGAATGCATTCTTTTACTTGGGTGGCGACCCGATGTTGTAGAAATGATTCAAGAGTATGAGAACTATCTCGGTCCTGGAAGTGTTTTGGAAGTTTTATCAGAGACGCCATTAAATGACAGGATTATTAGGGAAAACATCGTTGGTCATAGCAAACTCAAGAATGTTCGAGTTTCTCATAGGATTGGAAACCCCATGGACTACGGCACCTTAAAGGAAACCATTTTGAATATTCAGACTTCATTGAAGAAGGAAGATATTCCTTTTTCAATTGCTTGCATATCTGACAAAGATTGGCTTCTTGGAGATACATCCAAGACAGATAAGCTATCTGCTTATTCAATCCTACTTGCAGAAAATATCTGCGACAAACTTGGAGTCAAGGTACAAAATCTAGTTGCAGAAATTGTCGATTCAAAATTGGGGAAACAAATTAATAGAATAAAGCCATCAGTGACCTATGTTGCGGCGGAGGAAATATTGAGCCTTGTAACTGCTCAAGTTGCCGAGAATAGTGAATTGAATGAAGTTTGGAAAGACATACTAGATGCAGAGGGTGATGAAATATATGTGAAGGATATTAGCCTTTATATGAAAGAAGGAGAGAATCCATCATTTTCCGAGCTTTCTGAGAGAGCATATTTAAGGAGAGAAGTAGCCATAGGTTATGTGAAGAAGAACAAGAATGTAATCAACCCAATTTCAAAGTCAGAACCCCTCTCTCTTGAATTGACTGACTCATTGATAGTCATATCTGAGCTGGAAGGTGAACAGCCGGTCATTTTGTAA
Protein sequence

>MsG0180004277.01.T01

MSTIESSQQSNMQRLREGAQMQVMETDHIIICGMNSHLPFILKQLNKYHEFAVRLGTASARKQRILLMSDLPRKQIDRIADSIAKDLYHIDLLSKSCTLSLTKSFERAAANKARAIIILPAKGDRYEIDTDAFLTVLALQPIPDMGSVPTIVEVSRSQTCDLLKSISGLKVSPVEDVASKLFVQCSRQKGLIKIYRHLLNYRKNVFNLCSLPDLEGMTYRQIRHIFKDAVVCGLYRNGKIYFHPNDDEILQITDKVLFIGSLQNTNKPQVITTNGKEGKDGHNNELLEKDFDYAIELSKVRLANIVTRPNRSGSKAADGNVGPKECILLLGWRPDVVEMIQEYENYLGPGSVLEVLSETPLNDRIIRENIVGHSKLKNVRVSHRIGNPMDYGTLKETILNIQTSLKKEDIPFSIACISDKDWLLGDTSKTDKLSAYSILLAENICDKLGVKVQNLVAEIVDSKLGKQINRIKPSVTYVAAEEILSLVTAQVAENSELNEVWKDILDAEGDEIYVKDISLYMKEGENPSFSELSERAYLRREVAIGYVKKNKNVINPISKSEPLSLELTDSLIVISELEGEQPVIL*