Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580024755.01.T01 | XP_003611614.1 | 95.671 | 231 | 10 | 0 | 1 | 231 | 1 | 231 | 1.25E-159 | 451 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580024755.01.T01 | Q9SZE8 | 55.645 | 248 | 85 | 8 | 1 | 231 | 1 | 240 | 9.34E-80 | 242 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580024755.01.T01 | G7K3V2 | 95.671 | 231 | 10 | 0 | 1 | 231 | 1 | 231 | 5.98e-160 | 451 |
| Gene ID | Type | Classification |
|---|---|---|
| MsG0580024755.01.T01 | TF | LOB |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0380012357.01 | MsG0580024755.01 | -0.817680 | 2.908767e-52 | 2.132382e-49 |
| MsG0580024755.01 | MsG0880047545.01 | 0.863847 | 1.858561e-64 | 5.715208e-61 |
| MsG0280006838.01 | MsG0580024755.01 | 0.802584 | 5.234725e-49 | 2.573746e-46 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580024755.01.T01 | MTR_5g015880 | 95.671 | 231 | 10 | 0 | 1 | 231 | 1 | 231 | 1.52e-163 | 451 |
| MsG0580024755.01.T01 | MTR_4g095600 | 69.710 | 241 | 55 | 6 | 1 | 231 | 1 | 233 | 3.22e-109 | 313 |
| MsG0580024755.01.T01 | MTR_1g106420 | 56.579 | 152 | 61 | 3 | 1 | 147 | 1 | 152 | 7.59e-55 | 174 |
| MsG0580024755.01.T01 | MTR_7g007010 | 64.545 | 110 | 39 | 0 | 1 | 110 | 3 | 112 | 3.28e-52 | 171 |
| MsG0580024755.01.T01 | MTR_6g018270 | 61.818 | 110 | 42 | 0 | 1 | 110 | 3 | 112 | 8.75e-50 | 164 |
| MsG0580024755.01.T01 | MTR_6g453130 | 46.154 | 169 | 80 | 5 | 1 | 164 | 3 | 165 | 2.92e-45 | 151 |
| MsG0580024755.01.T01 | MTR_1g110840 | 56.881 | 109 | 45 | 1 | 1 | 107 | 3 | 111 | 9.77e-44 | 147 |
| MsG0580024755.01.T01 | MTR_6g054150 | 48.413 | 126 | 63 | 2 | 1 | 124 | 3 | 128 | 3.06e-40 | 138 |
| MsG0580024755.01.T01 | MTR_6g054080 | 52.294 | 109 | 50 | 2 | 1 | 107 | 3 | 111 | 2.30e-38 | 133 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580024755.01.T01 | AT4G37540 | 55.645 | 248 | 85 | 8 | 1 | 231 | 1 | 240 | 9.53e-81 | 242 |
| MsG0580024755.01.T01 | AT3G49940 | 57.031 | 256 | 76 | 10 | 1 | 231 | 1 | 247 | 4.89e-80 | 240 |
| MsG0580024755.01.T01 | AT5G67420 | 52.941 | 255 | 91 | 6 | 1 | 231 | 1 | 250 | 9.19e-75 | 227 |
| MsG0580024755.01.T01 | AT5G67420 | 52.941 | 255 | 91 | 6 | 1 | 231 | 1 | 250 | 9.19e-75 | 227 |
| MsG0580024755.01.T01 | AT1G67100 | 65.455 | 110 | 38 | 0 | 1 | 110 | 3 | 112 | 6.52e-52 | 168 |
| MsG0580024755.01.T01 | AT3G02550 | 63.636 | 110 | 40 | 0 | 1 | 110 | 3 | 112 | 2.17e-49 | 162 |
| MsG0580024755.01.T01 | AT1G68510 | 57.025 | 121 | 50 | 1 | 1 | 119 | 3 | 123 | 4.40e-47 | 155 |
Find 87 sgRNAs with CRISPR-Local
Find 104 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AACTCATGAACCGGACTTTC+TGG | 0.160468 | 5:-9271291 | None:intergenic |
| GAAACTCCGGTAAGGGTTTA+AGG | 0.160922 | 5:-9271180 | None:intergenic |
| ACGCGTTGACCAACGGTTTC+CGG | 0.249914 | 5:+9271398 | MsG0580024755.01.T01:CDS |
| ATTAAAATTCTCAAACAAAA+AGG | 0.262922 | 5:-9271546 | None:intergenic |
| GTGGCATGACCTTGAGCTTC+AGG | 0.279564 | 5:-9270804 | None:intergenic |
| ACTCACTACAACCCTTTCTA+AGG | 0.331551 | 5:-9270743 | None:intergenic |
| GAATTCATCGACGGTGTTCC+CGG | 0.351208 | 5:-9271436 | None:intergenic |
| GGACTTTCTGGTTCGGATCT+CGG | 0.355586 | 5:-9271279 | None:intergenic |
| AGTCCGACAGCACCGTTAAC+GGG | 0.370602 | 5:-9271094 | None:intergenic |
| ACGCGTTCTGTGGCGTTAAC+CGG | 0.381628 | 5:-9271381 | None:intergenic |
| CGGAACCCTTAAACCCTTAC+CGG | 0.384595 | 5:+9271174 | MsG0580024755.01.T01:CDS |
| AAAGTCCGGTTCATGAGTTC+TGG | 0.390533 | 5:+9271295 | MsG0580024755.01.T01:CDS |
| TATTACGCCCTTGTATTCAA+TGG | 0.394479 | 5:+9270772 | MsG0580024755.01.T01:CDS |
| AAGTCCGACAGCACCGTTAA+CGG | 0.413291 | 5:-9271095 | None:intergenic |
| AAACTCCGGTAAGGGTTTAA+GGG | 0.432686 | 5:-9271179 | None:intergenic |
| AAACCCTTACCGGAGTTTCT+CGG | 0.442329 | 5:+9271184 | MsG0580024755.01.T01:CDS |
| CGGTTGCCGTGTCCTTAGAA+AGG | 0.456637 | 5:+9270731 | MsG0580024755.01.T01:CDS |
| TTACCAGGTCTCTGTGGTGG+AGG | 0.463406 | 5:-9270885 | None:intergenic |
| AGAAGAGGAAGAGAAGAGAA+TGG | 0.464524 | 5:-9270606 | None:intergenic |
| GGTGGTAAACGCAAGCGATC+AGG | 0.465080 | 5:+9271316 | MsG0580024755.01.T01:CDS |
| GCTTCATCGGCAATGAAATC+CGG | 0.477949 | 5:+9271655 | MsG0580024755.01.T01:three_prime_UTR |
| TACCACCAGAACTCATGAAC+CGG | 0.478203 | 5:-9271300 | None:intergenic |
| ATGAACCGGACTTTCTGGTT+CGG | 0.483553 | 5:-9271286 | None:intergenic |
| AGCACCGTTAACGGGGTTCA+CGG | 0.485215 | 5:-9271086 | None:intergenic |
| TGTGACGACGGTGACGTGCT+TGG | 0.492180 | 5:+9271468 | MsG0580024755.01.T01:CDS |
| TGGCATGACCTTGAGCTTCA+GGG | 0.492713 | 5:-9270803 | None:intergenic |
| CGGAGGGAAATTCGCCGGCC+GGG | 0.499369 | 5:+9271418 | MsG0580024755.01.T01:CDS |
| AGAACCGTGAACCCCGTTAA+CGG | 0.510533 | 5:+9271082 | MsG0580024755.01.T01:CDS |
| CGTTGCAACTCATACCTAGT+TGG | 0.511859 | 5:-9270710 | None:intergenic |
| CCGGAGGGAAATTCGCCGGC+CGG | 0.514516 | 5:+9271417 | MsG0580024755.01.T01:CDS |
| GTGTCAAGCGGCGGTTGAAA+CGG | 0.518728 | 5:+9271141 | MsG0580024755.01.T01:CDS |
| GGTTGCCGTGTCCTTAGAAA+GGG | 0.520856 | 5:+9270732 | MsG0580024755.01.T01:CDS |
| CGTTAGAAATGAAAGACATA+AGG | 0.526325 | 5:-9270860 | None:intergenic |
| GCGTGTAAACCGAGAAACTC+CGG | 0.536983 | 5:-9271193 | None:intergenic |
| GAGATCCGAACCAGAAAGTC+CGG | 0.539752 | 5:+9271281 | MsG0580024755.01.T01:CDS |
| TCATCGACGGTGTTCCCGGC+CGG | 0.542141 | 5:-9271432 | None:intergenic |
| ACGGTGACGTGCTTGGAAAG+TGG | 0.543942 | 5:+9271475 | MsG0580024755.01.T01:CDS |
| GTATCGATCCATTGAATACA+AGG | 0.548656 | 5:-9270780 | None:intergenic |
| CGGTGACGTGCTTGGAAAGT+GGG | 0.551329 | 5:+9271476 | MsG0580024755.01.T01:CDS |
| TACCAGGTCTCTGTGGTGGA+GGG | 0.561251 | 5:-9270884 | None:intergenic |
| TTCTGAGGAATCTGTGACGA+CGG | 0.564218 | 5:+9271456 | MsG0580024755.01.T01:CDS |
| TGCTTGGAAAGTGGGATCGG+AGG | 0.566383 | 5:+9271484 | MsG0580024755.01.T01:CDS |
| TAAACCGAGAAACTCCGGTA+AGG | 0.574362 | 5:-9271188 | None:intergenic |
| CCGTTGGTCAACGCGTTCTG+TGG | 0.575430 | 5:-9271391 | None:intergenic |
| ACACCTCACATGAGGAGAAG+AGG | 0.577266 | 5:-9270621 | None:intergenic |
| CTTCCTCTTCTCCTCATGTG+AGG | 0.577472 | 5:+9270618 | MsG0580024755.01.T01:five_prime_UTR |
| GTTTCCGGAGGGAAATTCGC+CGG | 0.577846 | 5:+9271413 | MsG0580024755.01.T01:CDS |
| AATTTCCCTCCGGAAACCGT+TGG | 0.583258 | 5:-9271407 | None:intergenic |
| AGAGAAAGATGAGGGTTCGT+CGG | 0.584589 | 5:+9271732 | MsG0580024755.01.T01:three_prime_UTR |
| ACCGTTGATGACTCATCTGA+AGG | 0.585962 | 5:+9271226 | MsG0580024755.01.T01:CDS |
| ACGTGCTTGGAAAGTGGGAT+CGG | 0.586938 | 5:+9271481 | MsG0580024755.01.T01:CDS |
| CCGGCCGGCGAATTTCCCTC+CGG | 0.587093 | 5:-9271417 | None:intergenic |
| AACCCCGTTAACGGTGCTGT+CGG | 0.588780 | 5:+9271091 | MsG0580024755.01.T01:CDS |
| AAACCGAGAAACTCCGGTAA+GGG | 0.589079 | 5:-9271187 | None:intergenic |
| TTAAACAGAGAGAAAGATGA+GGG | 0.590185 | 5:+9271724 | MsG0580024755.01.T01:three_prime_UTR |
| GTCCCTCCACCACAGAGACC+TGG | 0.592710 | 5:+9270882 | MsG0580024755.01.T01:CDS |
| AGATTAAGATCAGTCGTCGC+CGG | 0.593377 | 5:-9271358 | None:intergenic |
| TATTTACCAGGTCTCTGTGG+TGG | 0.593625 | 5:-9270888 | None:intergenic |
| TCCTTCAGATGAGTCATCAA+CGG | 0.596231 | 5:-9271227 | None:intergenic |
| CGACGACTGATCTTAATCTC+CGG | 0.598907 | 5:+9271362 | MsG0580024755.01.T01:CDS |
| AAGTCACGTGCAACGACGCG+CGG | 0.599047 | 5:+9271251 | MsG0580024755.01.T01:CDS |
| CGTTGACCAACGGTTTCCGG+AGG | 0.601993 | 5:+9271401 | MsG0580024755.01.T01:CDS |
| TTTAAACAGAGAGAAAGATG+AGG | 0.602638 | 5:+9271723 | MsG0580024755.01.T01:three_prime_UTR |
| CCACAGAACGCGTTGACCAA+CGG | 0.603462 | 5:+9271391 | MsG0580024755.01.T01:CDS |
| AGGGTTTAAGGGTTCCGCCA+CGG | 0.607346 | 5:-9271168 | None:intergenic |
| GGCATGACCTTGAGCTTCAG+GGG | 0.607961 | 5:-9270802 | None:intergenic |
| TACAACCCTTTCTAAGGACA+CGG | 0.609661 | 5:-9270737 | None:intergenic |
| ATCGATACCCCTGAAGCTCA+AGG | 0.611816 | 5:+9270795 | MsG0580024755.01.T01:CDS |
| CAACTAGGTATGAGTTGCAA+CGG | 0.621586 | 5:+9270711 | MsG0580024755.01.T01:exon |
| GTCCGGTTCATGAGTTCTGG+TGG | 0.622596 | 5:+9271298 | MsG0580024755.01.T01:CDS |
| TGAAAGACATAAGGTCAGCA+CGG | 0.634887 | 5:-9270851 | None:intergenic |
| GTCCGACAGCACCGTTAACG+GGG | 0.636214 | 5:-9271093 | None:intergenic |
| GGTAAACGCAAGCGATCAGG+TGG | 0.636761 | 5:+9271319 | MsG0580024755.01.T01:CDS |
| GTTGAAACGGTGCTCCGTGG+CGG | 0.644097 | 5:+9271154 | MsG0580024755.01.T01:CDS |
| AAACTGGCACGTGTGTCAAG+CGG | 0.645348 | 5:+9271129 | MsG0580024755.01.T01:CDS |
| GTTGACCAACGGTTTCCGGA+GGG | 0.646523 | 5:+9271402 | MsG0580024755.01.T01:CDS |
| TGCTAAATACACCTCACATG+AGG | 0.652353 | 5:-9270629 | None:intergenic |
| CTGGCACGTGTGTCAAGCGG+CGG | 0.654365 | 5:+9271132 | MsG0580024755.01.T01:CDS |
| TTCAGATGAGTCATCAACGG+TGG | 0.656087 | 5:-9271224 | None:intergenic |
| GCGGTTGAAACGGTGCTCCG+TGG | 0.657002 | 5:+9271151 | MsG0580024755.01.T01:CDS |
| GATTATTTACCAGGTCTCTG+TGG | 0.665083 | 5:-9270891 | None:intergenic |
| TCTTTGTTGTTTGAAGCGTG+TGG | 0.669278 | 5:+9271058 | MsG0580024755.01.T01:CDS |
| GGTGTGTTACAAAATCTCAC+CGG | 0.677482 | 5:-9271674 | None:intergenic |
| GATTCCTCAGAATTCATCGA+CGG | 0.685600 | 5:-9271445 | None:intergenic |
| TATCGATCCATTGAATACAA+GGG | 0.699979 | 5:-9270779 | None:intergenic |
| AACACCGTCGATGAATTCTG+AGG | 0.704407 | 5:+9271441 | MsG0580024755.01.T01:CDS |
| AAACTTGGCTACAAAGACAG+TGG | 0.714204 | 5:-9270823 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTAAAATTCTCAAACAAAA+AGG | - | Chr5:9271549-9271568 | None:intergenic | 15.0% |
| !! | TGATTGATAGATCATAAAAA+AGG | - | Chr5:9271769-9271788 | None:intergenic | 20.0% |
| !!! | TTTAAGTTTTTTAACCAACT+AGG | + | Chr5:9270696-9270715 | MsG0580024755.01.T01:five_prime_UTR | 20.0% |
| ! | GAAGATAAAGATTATTTACC+AGG | - | Chr5:9270903-9270922 | None:intergenic | 25.0% |
| ! | TAGATGAACTAAACTAACTA+AGG | + | Chr5:9271004-9271023 | MsG0580024755.01.T01:intron | 25.0% |
| !!! | AGATTCGTGTTTTTTGTTTA+TGG | + | Chr5:9271579-9271598 | MsG0580024755.01.T01:three_prime_UTR | 25.0% |
| !!! | TTTTTTTAGTGTTGCTTCAT+CGG | + | Chr5:9271642-9271661 | MsG0580024755.01.T01:three_prime_UTR | 25.0% |
| CGTTAGAAATGAAAGACATA+AGG | - | Chr5:9270863-9270882 | None:intergenic | 30.0% | |
| TATCGATCCATTGAATACAA+GGG | - | Chr5:9270782-9270801 | None:intergenic | 30.0% | |
| TTAAACAGAGAGAAAGATGA+GGG | + | Chr5:9271724-9271743 | MsG0580024755.01.T01:three_prime_UTR | 30.0% | |
| TTTAAACAGAGAGAAAGATG+AGG | + | Chr5:9271723-9271742 | MsG0580024755.01.T01:three_prime_UTR | 30.0% | |
| AAAACCAGAGAAAAATCCTG+TGG | - | Chr5:9271701-9271720 | None:intergenic | 35.0% | |
| CAAAAAGGTTGAGAACTTTG+CGG | - | Chr5:9271534-9271553 | None:intergenic | 35.0% | |
| TATTACGCCCTTGTATTCAA+TGG | + | Chr5:9270772-9270791 | MsG0580024755.01.T01:CDS | 35.0% | |
| ! | GTATCGATCCATTGAATACA+AGG | - | Chr5:9270783-9270802 | None:intergenic | 35.0% |
| ! | GTCTTTGTAGCCAAGTTTTT+CGG | + | Chr5:9270828-9270847 | MsG0580024755.01.T01:CDS | 35.0% |
| ! | TTAGAGTGAAAGTGTAACTG+TGG | - | Chr5:9270938-9270957 | None:intergenic | 35.0% |
| AAACTCCGGTAAGGGTTTAA+GGG | - | Chr5:9271182-9271201 | None:intergenic | 40.0% | |
| AAACTTGGCTACAAAGACAG+TGG | - | Chr5:9270826-9270845 | None:intergenic | 40.0% | |
| ACTCACTACAACCCTTTCTA+AGG | - | Chr5:9270746-9270765 | None:intergenic | 40.0% | |
| CAACTAGGTATGAGTTGCAA+CGG | + | Chr5:9270711-9270730 | MsG0580024755.01.T01:exon | 40.0% | |
| GATTATTTACCAGGTCTCTG+TGG | - | Chr5:9270894-9270913 | None:intergenic | 40.0% | |
| GATTCCTCAGAATTCATCGA+CGG | - | Chr5:9271448-9271467 | None:intergenic | 40.0% | |
| GGTGTGTTACAAAATCTCAC+CGG | - | Chr5:9271677-9271696 | None:intergenic | 40.0% | |
| TCCTTCAGATGAGTCATCAA+CGG | - | Chr5:9271230-9271249 | None:intergenic | 40.0% | |
| TGAAAGACATAAGGTCAGCA+CGG | - | Chr5:9270854-9270873 | None:intergenic | 40.0% | |
| TGCTAAATACACCTCACATG+AGG | - | Chr5:9270632-9270651 | None:intergenic | 40.0% | |
| ! | TACAACCCTTTCTAAGGACA+CGG | - | Chr5:9270740-9270759 | None:intergenic | 40.0% |
| !! | TCTTTGTTGTTTGAAGCGTG+TGG | + | Chr5:9271058-9271077 | MsG0580024755.01.T01:CDS | 40.0% |
| !!! | TGGTGAAGTTTTGAAGCTTC+CGG | + | Chr5:9271339-9271358 | MsG0580024755.01.T01:CDS | 40.0% |
| AAACCCTTACCGGAGTTTCT+CGG | + | Chr5:9271184-9271203 | MsG0580024755.01.T01:CDS | 45.0% | |
| AAACCGAGAAACTCCGGTAA+GGG | - | Chr5:9271190-9271209 | None:intergenic | 45.0% | |
| AAAGTCCGGTTCATGAGTTC+TGG | + | Chr5:9271295-9271314 | MsG0580024755.01.T01:CDS | 45.0% | |
| AACACCGTCGATGAATTCTG+AGG | + | Chr5:9271441-9271460 | MsG0580024755.01.T01:CDS | 45.0% | |
| AACTCATGAACCGGACTTTC+TGG | - | Chr5:9271294-9271313 | None:intergenic | 45.0% | |
| ACCAGAGAAAAATCCTGTGG+CGG | - | Chr5:9271698-9271717 | None:intergenic | 45.0% | |
| AGAGAAAGATGAGGGTTCGT+CGG | + | Chr5:9271732-9271751 | MsG0580024755.01.T01:three_prime_UTR | 45.0% | |
| AGATTAAGATCAGTCGTCGC+CGG | - | Chr5:9271361-9271380 | None:intergenic | 45.0% | |
| CGACGACTGATCTTAATCTC+CGG | + | Chr5:9271362-9271381 | MsG0580024755.01.T01:CDS | 45.0% | |
| CGTTGCAACTCATACCTAGT+TGG | - | Chr5:9270713-9270732 | None:intergenic | 45.0% | |
| GAAACTCCGGTAAGGGTTTA+AGG | - | Chr5:9271183-9271202 | None:intergenic | 45.0% | |
| GCTTCATCGGCAATGAAATC+CGG | + | Chr5:9271655-9271674 | MsG0580024755.01.T01:three_prime_UTR | 45.0% | |
| TAAACCGAGAAACTCCGGTA+AGG | - | Chr5:9271191-9271210 | None:intergenic | 45.0% | |
| TACCACCAGAACTCATGAAC+CGG | - | Chr5:9271303-9271322 | None:intergenic | 45.0% | |
| TATTTACCAGGTCTCTGTGG+TGG | - | Chr5:9270891-9270910 | None:intergenic | 45.0% | |
| TTCAGATGAGTCATCAACGG+TGG | - | Chr5:9271227-9271246 | None:intergenic | 45.0% | |
| ! | ATTTTGTAACACACCGCCAC+AGG | + | Chr5:9271682-9271701 | MsG0580024755.01.T01:three_prime_UTR | 45.0% |
| ! | GACTTTTGTGGACAGGAAAC+TGG | + | Chr5:9271113-9271132 | MsG0580024755.01.T01:CDS | 45.0% |
| ! | TTCTGAGGAATCTGTGACGA+CGG | + | Chr5:9271456-9271475 | MsG0580024755.01.T01:CDS | 45.0% |
| !! | ACCGTTGATGACTCATCTGA+AGG | + | Chr5:9271226-9271245 | MsG0580024755.01.T01:CDS | 45.0% |
| !! | ATGAACCGGACTTTCTGGTT+CGG | - | Chr5:9271289-9271308 | None:intergenic | 45.0% |
| AAACTGGCACGTGTGTCAAG+CGG | + | Chr5:9271129-9271148 | MsG0580024755.01.T01:CDS | 50.0% | |
| AAGTCCGACAGCACCGTTAA+CGG | - | Chr5:9271098-9271117 | None:intergenic | 50.0% | |
| AATTTCCCTCCGGAAACCGT+TGG | - | Chr5:9271410-9271429 | None:intergenic | 50.0% | |
| ACACCTCACATGAGGAGAAG+AGG | - | Chr5:9270624-9270643 | None:intergenic | 50.0% | |
| ACGTGCTTGGAAAGTGGGAT+CGG | + | Chr5:9271481-9271500 | MsG0580024755.01.T01:CDS | 50.0% | |
| AGAACCGTGAACCCCGTTAA+CGG | + | Chr5:9271082-9271101 | MsG0580024755.01.T01:CDS | 50.0% | |
| ATCGATACCCCTGAAGCTCA+AGG | + | Chr5:9270795-9270814 | MsG0580024755.01.T01:CDS | 50.0% | |
| CGGAACCCTTAAACCCTTAC+CGG | + | Chr5:9271174-9271193 | MsG0580024755.01.T01:CDS | 50.0% | |
| CTTCCTCTTCTCCTCATGTG+AGG | + | Chr5:9270618-9270637 | MsG0580024755.01.T01:five_prime_UTR | 50.0% | |
| GAATTCATCGACGGTGTTCC+CGG | - | Chr5:9271439-9271458 | None:intergenic | 50.0% | |
| GAGATCCGAACCAGAAAGTC+CGG | + | Chr5:9271281-9271300 | MsG0580024755.01.T01:CDS | 50.0% | |
| GCGTGTAAACCGAGAAACTC+CGG | - | Chr5:9271196-9271215 | None:intergenic | 50.0% | |
| GGTTGCCGTGTCCTTAGAAA+GGG | + | Chr5:9270732-9270751 | MsG0580024755.01.T01:CDS | 50.0% | |
| TGGCATGACCTTGAGCTTCA+GGG | - | Chr5:9270806-9270825 | None:intergenic | 50.0% | |
| ! | ACCGCCACAGGATTTTTCTC+TGG | + | Chr5:9271694-9271713 | MsG0580024755.01.T01:three_prime_UTR | 50.0% |
| !! | GGACTTTCTGGTTCGGATCT+CGG | - | Chr5:9271282-9271301 | None:intergenic | 50.0% |
| ACGCGTTCTGTGGCGTTAAC+CGG | - | Chr5:9271384-9271403 | None:intergenic | 55.0% | |
| ACGGTGACGTGCTTGGAAAG+TGG | + | Chr5:9271475-9271494 | MsG0580024755.01.T01:CDS | 55.0% | |
| AGCACCGTTAACGGGGTTCA+CGG | - | Chr5:9271089-9271108 | None:intergenic | 55.0% | |
| AGGGTTTAAGGGTTCCGCCA+CGG | - | Chr5:9271171-9271190 | None:intergenic | 55.0% | |
| AGTCCGACAGCACCGTTAAC+GGG | - | Chr5:9271097-9271116 | None:intergenic | 55.0% | |
| CGGTGACGTGCTTGGAAAGT+GGG | + | Chr5:9271476-9271495 | MsG0580024755.01.T01:CDS | 55.0% | |
| CGGTTGCCGTGTCCTTAGAA+AGG | + | Chr5:9270731-9270750 | MsG0580024755.01.T01:CDS | 55.0% | |
| GGCATGACCTTGAGCTTCAG+GGG | - | Chr5:9270805-9270824 | None:intergenic | 55.0% | |
| GGTAAACGCAAGCGATCAGG+TGG | + | Chr5:9271319-9271338 | MsG0580024755.01.T01:CDS | 55.0% | |
| GGTGGTAAACGCAAGCGATC+AGG | + | Chr5:9271316-9271335 | MsG0580024755.01.T01:CDS | 55.0% | |
| GTCAGCACGGCCGAAAAACT+TGG | - | Chr5:9270841-9270860 | None:intergenic | 55.0% | |
| GTGGCATGACCTTGAGCTTC+AGG | - | Chr5:9270807-9270826 | None:intergenic | 55.0% | |
| GTGTCAAGCGGCGGTTGAAA+CGG | + | Chr5:9271141-9271160 | MsG0580024755.01.T01:CDS | 55.0% | |
| GTTGACCAACGGTTTCCGGA+GGG | + | Chr5:9271402-9271421 | MsG0580024755.01.T01:CDS | 55.0% | |
| GTTTCCGGAGGGAAATTCGC+CGG | + | Chr5:9271413-9271432 | MsG0580024755.01.T01:CDS | 55.0% | |
| TGCTTGGAAAGTGGGATCGG+AGG | + | Chr5:9271484-9271503 | MsG0580024755.01.T01:CDS | 55.0% | |
| TTACCAGGTCTCTGTGGTGG+AGG | - | Chr5:9270888-9270907 | None:intergenic | 55.0% | |
| ! | ACGCGTTGACCAACGGTTTC+CGG | + | Chr5:9271398-9271417 | MsG0580024755.01.T01:CDS | 55.0% |
| ! | CCACAGAACGCGTTGACCAA+CGG | + | Chr5:9271391-9271410 | MsG0580024755.01.T01:CDS | 55.0% |
| ! | GCTGTCGGACTTTTGTGGAC+AGG | + | Chr5:9271106-9271125 | MsG0580024755.01.T01:CDS | 55.0% |
| ! | GTCCGGTTCATGAGTTCTGG+TGG | + | Chr5:9271298-9271317 | MsG0580024755.01.T01:CDS | 55.0% |
| ! | TACCAGGTCTCTGTGGTGGA+GGG | - | Chr5:9270887-9270906 | None:intergenic | 55.0% |
| !! | AACCCCGTTAACGGTGCTGT+CGG | + | Chr5:9271091-9271110 | MsG0580024755.01.T01:CDS | 55.0% |
| !!! | ACGGTGCTGTCGGACTTTTG+TGG | + | Chr5:9271101-9271120 | MsG0580024755.01.T01:CDS | 55.0% |
| AAGTCACGTGCAACGACGCG+CGG | + | Chr5:9271251-9271270 | MsG0580024755.01.T01:CDS | 60.0% | |
| CCGTTGGTCAACGCGTTCTG+TGG | - | Chr5:9271394-9271413 | None:intergenic | 60.0% | |
| CGTTGACCAACGGTTTCCGG+AGG | + | Chr5:9271401-9271420 | MsG0580024755.01.T01:CDS | 60.0% | |
| GTCCGACAGCACCGTTAACG+GGG | - | Chr5:9271096-9271115 | None:intergenic | 60.0% | |
| GTTGAAACGGTGCTCCGTGG+CGG | + | Chr5:9271154-9271173 | MsG0580024755.01.T01:CDS | 60.0% | |
| TGTGACGACGGTGACGTGCT+TGG | + | Chr5:9271468-9271487 | MsG0580024755.01.T01:CDS | 60.0% | |
| CTGGCACGTGTGTCAAGCGG+CGG | + | Chr5:9271132-9271151 | MsG0580024755.01.T01:CDS | 65.0% | |
| GCGGTTGAAACGGTGCTCCG+TGG | + | Chr5:9271151-9271170 | MsG0580024755.01.T01:CDS | 65.0% | |
| GTCCCTCCACCACAGAGACC+TGG | + | Chr5:9270882-9270901 | MsG0580024755.01.T01:CDS | 65.0% | |
| TCATCGACGGTGTTCCCGGC+CGG | - | Chr5:9271435-9271454 | None:intergenic | 65.0% | |
| CCGGAGGGAAATTCGCCGGC+CGG | + | Chr5:9271417-9271436 | MsG0580024755.01.T01:CDS | 70.0% | |
| CCGGCCGGCGAATTTCCCTC+CGG | - | Chr5:9271420-9271439 | None:intergenic | 70.0% | |
| CGGAGGGAAATTCGCCGGCC+GGG | + | Chr5:9271418-9271437 | MsG0580024755.01.T01:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr5 | gene | 9270608 | 9271842 | 9270608 | ID=MsG0580024755.01;Name=MsG0580024755.01 |
| Chr5 | mRNA | 9270608 | 9271842 | 9270608 | ID=MsG0580024755.01.T01;Parent=MsG0580024755.01;Name=MsG0580024755.01.T01;_AED=0.15;_eAED=0.15;_QI=112|1|1|1|1|1|2|284|231 |
| Chr5 | exon | 9270608 | 9270903 | 9270608 | ID=MsG0580024755.01.T01:exon:19518;Parent=MsG0580024755.01.T01 |
| Chr5 | exon | 9271047 | 9271842 | 9271047 | ID=MsG0580024755.01.T01:exon:19519;Parent=MsG0580024755.01.T01 |
| Chr5 | five_prime_UTR | 9270608 | 9270719 | 9270608 | ID=MsG0580024755.01.T01:five_prime_utr;Parent=MsG0580024755.01.T01 |
| Chr5 | CDS | 9270720 | 9270903 | 9270720 | ID=MsG0580024755.01.T01:cds;Parent=MsG0580024755.01.T01 |
| Chr5 | CDS | 9271047 | 9271558 | 9271047 | ID=MsG0580024755.01.T01:cds;Parent=MsG0580024755.01.T01 |
| Chr5 | three_prime_UTR | 9271559 | 9271842 | 9271559 | ID=MsG0580024755.01.T01:three_prime_utr;Parent=MsG0580024755.01.T01 |
| Gene Sequence |
| Protein sequence |
