Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580025011.01.T01 | XP_003612086.1 | 87.349 | 332 | 20 | 8 | 1 | 319 | 1 | 323 | 0 | 520 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580025011.01.T01 | Q9SD40 | 43.669 | 387 | 133 | 13 | 1 | 319 | 1 | 370 | 1.82E-75 | 239 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580025011.01.T01 | G7KGA2 | 87.349 | 332 | 20 | 8 | 1 | 319 | 1 | 323 | 0.0 | 520 |
| Gene ID | Type | Classification |
|---|---|---|
| MsG0580025011.01.T01 | TF | SRS |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0580025011.01 | MsG0580025028.01 | 0.876961 | 9.203275e-69 | 4.548431e-65 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580025011.01.T01 | MTR_5g021130 | 87.349 | 332 | 20 | 8 | 1 | 319 | 1 | 323 | 0.0 | 520 |
| MsG0580025011.01.T01 | MTR_8g076620 | 53.757 | 346 | 118 | 12 | 1 | 319 | 1 | 331 | 1.77e-94 | 283 |
| MsG0580025011.01.T01 | MTR_3g112510 | 42.138 | 318 | 150 | 11 | 1 | 314 | 1 | 288 | 3.04e-61 | 197 |
| MsG0580025011.01.T01 | MTR_5g089750 | 50.314 | 159 | 55 | 4 | 106 | 246 | 249 | 401 | 3.47e-39 | 144 |
| MsG0580025011.01.T01 | MTR_4g071110 | 44.156 | 154 | 66 | 1 | 95 | 248 | 6 | 139 | 1.70e-38 | 137 |
| MsG0580025011.01.T01 | MTR_3g014660 | 43.750 | 160 | 74 | 3 | 106 | 251 | 134 | 291 | 4.15e-38 | 138 |
| MsG0580025011.01.T01 | MTR_8g039110 | 42.857 | 168 | 76 | 3 | 106 | 254 | 124 | 290 | 4.60e-34 | 127 |
| MsG0580025011.01.T01 | MTR_1g023230 | 55.556 | 117 | 33 | 4 | 104 | 208 | 120 | 229 | 1.01e-27 | 108 |
| MsG0580025011.01.T01 | MTR_0363s0040 | 77.778 | 45 | 10 | 0 | 106 | 150 | 124 | 168 | 7.50e-21 | 90.1 |
| MsG0580025011.01.T01 | MTR_0105s0070 | 63.636 | 33 | 12 | 0 | 108 | 140 | 44 | 76 | 1.18e-11 | 60.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580025011.01.T01 | AT3G51060 | 43.669 | 387 | 133 | 13 | 1 | 319 | 1 | 370 | 1.86e-76 | 239 |
| MsG0580025011.01.T01 | AT5G66350 | 48.045 | 358 | 120 | 16 | 1 | 319 | 1 | 331 | 3.32e-75 | 234 |
| MsG0580025011.01.T01 | AT5G66350 | 48.116 | 345 | 115 | 15 | 1 | 306 | 1 | 320 | 9.21e-73 | 228 |
| MsG0580025011.01.T01 | AT5G66350 | 48.116 | 345 | 115 | 15 | 1 | 306 | 1 | 320 | 1.48e-72 | 228 |
| MsG0580025011.01.T01 | AT1G19790 | 40.437 | 366 | 148 | 14 | 1 | 318 | 1 | 344 | 3.45e-66 | 211 |
| MsG0580025011.01.T01 | AT1G19790 | 40.437 | 366 | 148 | 14 | 1 | 318 | 1 | 344 | 3.45e-66 | 211 |
| MsG0580025011.01.T01 | AT1G75520 | 51.667 | 240 | 80 | 9 | 102 | 319 | 121 | 346 | 5.11e-65 | 208 |
| MsG0580025011.01.T01 | AT4G36260 | 38.757 | 338 | 167 | 14 | 1 | 317 | 1 | 319 | 1.69e-48 | 165 |
| MsG0580025011.01.T01 | AT2G18120 | 41.961 | 255 | 87 | 10 | 1 | 248 | 6 | 206 | 3.17e-46 | 156 |
| MsG0580025011.01.T01 | AT2G18120 | 41.339 | 254 | 88 | 10 | 1 | 248 | 6 | 204 | 2.41e-44 | 151 |
| MsG0580025011.01.T01 | AT2G21400 | 52.055 | 146 | 55 | 3 | 103 | 246 | 6 | 138 | 3.84e-44 | 150 |
| MsG0580025011.01.T01 | AT2G21400 | 52.055 | 146 | 55 | 3 | 103 | 246 | 7 | 139 | 4.13e-44 | 149 |
| MsG0580025011.01.T01 | AT2G21400 | 50.676 | 148 | 39 | 3 | 103 | 246 | 6 | 123 | 2.80e-43 | 147 |
| MsG0580025011.01.T01 | AT2G21400 | 50.676 | 148 | 39 | 3 | 103 | 246 | 7 | 124 | 2.92e-43 | 147 |
| MsG0580025011.01.T01 | AT5G12330 | 45.570 | 158 | 69 | 2 | 106 | 246 | 112 | 269 | 5.80e-37 | 135 |
| MsG0580025011.01.T01 | AT5G12330 | 45.570 | 158 | 69 | 2 | 106 | 246 | 112 | 269 | 5.80e-37 | 135 |
| MsG0580025011.01.T01 | AT5G12330 | 45.570 | 158 | 69 | 2 | 106 | 246 | 199 | 356 | 1.13e-36 | 136 |
| MsG0580025011.01.T01 | AT5G33210 | 60.920 | 87 | 26 | 1 | 104 | 182 | 15 | 101 | 7.36e-29 | 107 |
| MsG0580025011.01.T01 | AT5G33210 | 60.920 | 87 | 26 | 1 | 104 | 182 | 50 | 136 | 2.34e-28 | 108 |
| MsG0580025011.01.T01 | AT3G54430 | 39.597 | 149 | 77 | 4 | 102 | 249 | 37 | 173 | 2.55e-27 | 105 |
| MsG0580025011.01.T01 | AT5G12330 | 86.957 | 46 | 6 | 0 | 106 | 151 | 112 | 157 | 6.74e-23 | 95.1 |
Find 77 sgRNAs with CRISPR-Local
Find 94 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GACAGAAGAGATAAGGTTTA+AGG | 0.199519 | 5:-12803547 | None:intergenic |
| CCATGTTGTTGAGATGATTT+AGG | 0.214641 | 5:-12802608 | None:intergenic |
| TACTCCTCTGGTGTTGTGTT+AGG | 0.305453 | 5:+12802344 | MsG0580025011.01.T01:CDS |
| ATAATCCAACAACAGAATTC+TGG | 0.358326 | 5:+12802192 | MsG0580025011.01.T01:CDS |
| ACTAGAATTAGAGGCGTTTC+CGG | 0.373528 | 5:-12803496 | None:intergenic |
| TCCCTGATGCTACTGCTGTT+GGG | 0.375712 | 5:+12803568 | MsG0580025011.01.T01:CDS |
| TGGGAATAATAGTTACAATA+TGG | 0.377378 | 5:+12803470 | MsG0580025011.01.T01:CDS |
| AGAGTGAGTGAAGGGTTTGT+AGG | 0.387801 | 5:-12802680 | None:intergenic |
| TTATACCAGAATTCTGTTGT+TGG | 0.398181 | 5:-12802197 | None:intergenic |
| TTGGATTATTATTATTCTGT+TGG | 0.399176 | 5:-12802178 | None:intergenic |
| TAACTATTATTCCCATGATC+TGG | 0.405584 | 5:-12803462 | None:intergenic |
| TGAATTCTCCAGCAGAGTTC+AGG | 0.409422 | 5:+12803334 | MsG0580025011.01.T01:CDS |
| TATGATTATGGTCCAGATCA+TGG | 0.413474 | 5:+12803450 | MsG0580025011.01.T01:CDS |
| TGAATGATGAATCAAGATCT+TGG | 0.413551 | 5:-12803672 | None:intergenic |
| CTTTCTCTTCTTCTAGCAGC+AGG | 0.421698 | 5:-12802563 | None:intergenic |
| GTCCCTGATGCTACTGCTGT+TGG | 0.422352 | 5:+12803567 | MsG0580025011.01.T01:CDS |
| AAACTCATGTTAAGAGTACT+TGG | 0.425175 | 5:+12802537 | MsG0580025011.01.T01:CDS |
| ACAGAAGAGATAAGGTTTAA+GGG | 0.430955 | 5:-12803546 | None:intergenic |
| GTGGGAAGTGGAAGTGGAAG+TGG | 0.430984 | 5:+12802419 | MsG0580025011.01.T01:CDS |
| TCCCCAACAGCAGTAGCATC+AGG | 0.439192 | 5:-12803570 | None:intergenic |
| TGTTAGGAGTGGGACCTACT+AGG | 0.445348 | 5:+12802360 | MsG0580025011.01.T01:CDS |
| GAGTGTACCACTAGAATTAG+AGG | 0.455284 | 5:-12803505 | None:intergenic |
| GCTGGAGAATTCACCACAGC+TGG | 0.457156 | 5:-12803324 | None:intergenic |
| GGTATAAGTTGTCAAGATTG+TGG | 0.462555 | 5:+12802443 | MsG0580025011.01.T01:CDS |
| TGGAATAGTAGTAGTATGGC+TGG | 0.464468 | 5:+12802122 | None:intergenic |
| CAACAAGATCTTTACTCCTC+TGG | 0.470648 | 5:+12802332 | MsG0580025011.01.T01:CDS |
| AAGAATTGCGTACCACTAGA+AGG | 0.471301 | 5:-12803642 | None:intergenic |
| TCTAGTGGTACACTCCTTGA+AGG | 0.471939 | 5:+12803513 | MsG0580025011.01.T01:CDS |
| GAATGATGAATCAAGATCTT+GGG | 0.474567 | 5:-12803671 | None:intergenic |
| GTGTTTGTGGGAAGTGGAAG+TGG | 0.476364 | 5:+12802413 | MsG0580025011.01.T01:CDS |
| CCCTGATGCTACTGCTGTTG+GGG | 0.488129 | 5:+12803569 | MsG0580025011.01.T01:CDS |
| CTCACGCACCTGAACTCTGC+TGG | 0.492218 | 5:-12803342 | None:intergenic |
| TCTACTGTGTTTGTGGGAAG+TGG | 0.498034 | 5:+12802407 | MsG0580025011.01.T01:CDS |
| GTTAGGAGTGGGACCTACTA+GGG | 0.499651 | 5:+12802361 | MsG0580025011.01.T01:CDS |
| AGGGCTGAGCCACCCCTTCA+AGG | 0.501243 | 5:-12803527 | None:intergenic |
| CATCAGGGACAGAAGAGATA+AGG | 0.508932 | 5:-12803554 | None:intergenic |
| TCAGAAGAACAAACCCTAGT+AGG | 0.513659 | 5:-12802374 | None:intergenic |
| TCACTCACTCTCCCTTCAGC+AGG | 0.521572 | 5:+12802692 | MsG0580025011.01.T01:CDS |
| GTATAAGTTGTCAAGATTGT+GGG | 0.521679 | 5:+12802444 | MsG0580025011.01.T01:CDS |
| GAATAGATCTACTGTGTTTG+TGG | 0.527218 | 5:+12802400 | MsG0580025011.01.T01:CDS |
| CTCTGGTGTTGTGTTAGGAG+TGG | 0.527736 | 5:+12802349 | MsG0580025011.01.T01:CDS |
| TAAACGAGTGCAAGCTAAAG+AGG | 0.530926 | 5:-12802657 | None:intergenic |
| TCTGGTGTTGTGTTAGGAGT+GGG | 0.532211 | 5:+12802350 | MsG0580025011.01.T01:CDS |
| CTAGTGGTACACTCCTTGAA+GGG | 0.532650 | 5:+12803514 | MsG0580025011.01.T01:CDS |
| ATGAAGGAATTAAGTGGAGC+TGG | 0.538890 | 5:-12803618 | None:intergenic |
| AGTGTTGTTGATGTTGATGT+TGG | 0.543270 | 5:-12802274 | None:intergenic |
| AGAACTTGTTGTAAGAGTAG+AGG | 0.544764 | 5:+12802503 | MsG0580025011.01.T01:CDS |
| AATAGTTACAATATGGCTAC+CGG | 0.553111 | 5:+12803477 | MsG0580025011.01.T01:CDS |
| GGAGCTGGATACAAAGAAGA+AGG | 0.554978 | 5:-12803603 | None:intergenic |
| AATAGATCTACTGTGTTTGT+GGG | 0.559670 | 5:+12802401 | MsG0580025011.01.T01:CDS |
| TCAACAGCTGTAAACATTGG+AGG | 0.560848 | 5:+12803405 | MsG0580025011.01.T01:CDS |
| CAAGTTCTACATCTCATATG+AGG | 0.561087 | 5:-12802488 | None:intergenic |
| GAAGGCATGAAGGAATTAAG+TGG | 0.562752 | 5:-12803624 | None:intergenic |
| ATGATTATGGTCCAGATCAT+GGG | 0.563960 | 5:+12803451 | MsG0580025011.01.T01:CDS |
| GTTGTTTCTAATTCATACCG+TGG | 0.564425 | 5:+12802236 | MsG0580025011.01.T01:CDS |
| ATGAATCAAGATCTTGGGTG+GGG | 0.569684 | 5:-12803666 | None:intergenic |
| AATTCCTTCATGCCTTCTAG+TGG | 0.576741 | 5:+12803630 | MsG0580025011.01.T01:CDS |
| TGGTACACTCCTTGAAGGGG+TGG | 0.576962 | 5:+12803518 | MsG0580025011.01.T01:CDS |
| ATATATAATATACCTGCTGA+AGG | 0.587423 | 5:-12802704 | None:intergenic |
| TGATGAATCAAGATCTTGGG+TGG | 0.587902 | 5:-12803668 | None:intergenic |
| TATTCAACAGCTGTAAACAT+TGG | 0.588034 | 5:+12803402 | MsG0580025011.01.T01:CDS |
| CTGAAGGGAGAGTGAGTGAA+GGG | 0.593490 | 5:-12802688 | None:intergenic |
| CCTAAATCATCTCAACAACA+TGG | 0.595265 | 5:+12802608 | MsG0580025011.01.T01:CDS |
| CAACAGCTGTAAACATTGGA+GGG | 0.602052 | 5:+12803406 | MsG0580025011.01.T01:CDS |
| GATGAATCAAGATCTTGGGT+GGG | 0.609126 | 5:-12803667 | None:intergenic |
| CCCCAACAGCAGTAGCATCA+GGG | 0.616436 | 5:-12803569 | None:intergenic |
| CTCAGTTGATGAGAACGAAG+AGG | 0.617435 | 5:+12803371 | MsG0580025011.01.T01:CDS |
| CGTACCACTAGAAGGCATGA+AGG | 0.617919 | 5:-12803634 | None:intergenic |
| AACTCATGTTAAGAGTACTT+GGG | 0.622414 | 5:+12802538 | MsG0580025011.01.T01:CDS |
| GGAAGTGGAAGTGGAAGTGG+AGG | 0.626200 | 5:+12802422 | MsG0580025011.01.T01:CDS |
| TGAATCAAGATCTTGGGTGG+GGG | 0.629021 | 5:-12803665 | None:intergenic |
| TATATAATATACCTGCTGAA+GGG | 0.636400 | 5:-12802703 | None:intergenic |
| TAGTGGTACACTCCTTGAAG+GGG | 0.649565 | 5:+12803515 | MsG0580025011.01.T01:CDS |
| GCTGAAGGGAGAGTGAGTGA+AGG | 0.652710 | 5:-12802689 | None:intergenic |
| CACTCCTAACACAACACCAG+AGG | 0.667381 | 5:-12802348 | None:intergenic |
| GGAAACGCCTCTAATTCTAG+TGG | 0.698556 | 5:+12803498 | MsG0580025011.01.T01:CDS |
| GGTTCCAAATCTCAAAACCA+CGG | 0.709690 | 5:-12802253 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTGTTAATTATCATAAAAA+AGG | + | Chr5:12803279-12803298 | MsG0580025011.01.T01:intron | 10.0% |
| !! | TTGTTAATTATCATAAAAAA+GGG | + | Chr5:12803280-12803299 | MsG0580025011.01.T01:intron | 10.0% |
| !! | TAAATATGTATATATCATCA+TGG | - | Chr5:12803225-12803244 | None:intergenic | 15.0% |
| !! | AAACAAACAAACTATAAGTT+AGG | - | Chr5:12803248-12803267 | None:intergenic | 20.0% |
| !! | TTGGATTATTATTATTCTGT+TGG | - | Chr5:12802181-12802200 | None:intergenic | 20.0% |
| ! | ATATATAATATACCTGCTGA+AGG | - | Chr5:12802707-12802726 | None:intergenic | 25.0% |
| ! | CATTGAATAACTTATGTATC+TGG | - | Chr5:12803130-12803149 | None:intergenic | 25.0% |
| ! | GACATATATGAACAAAGAAA+AGG | - | Chr5:12803060-12803079 | None:intergenic | 25.0% |
| ! | TATATAATATACCTGCTGAA+GGG | - | Chr5:12802706-12802725 | None:intergenic | 25.0% |
| ! | TGGGAATAATAGTTACAATA+TGG | + | Chr5:12803470-12803489 | MsG0580025011.01.T01:CDS | 25.0% |
| !! | AGAGGAATTTTGTATGATTA+TGG | + | Chr5:12803438-12803457 | MsG0580025011.01.T01:CDS | 25.0% |
| AATAGATCTACTGTGTTTGT+GGG | + | Chr5:12802401-12802420 | MsG0580025011.01.T01:CDS | 30.0% | |
| AATAGTTACAATATGGCTAC+CGG | + | Chr5:12803477-12803496 | MsG0580025011.01.T01:CDS | 30.0% | |
| ACAGAAGAGATAAGGTTTAA+GGG | - | Chr5:12803549-12803568 | None:intergenic | 30.0% | |
| ATAATCCAACAACAGAATTC+TGG | + | Chr5:12802192-12802211 | MsG0580025011.01.T01:CDS | 30.0% | |
| ATTCTCTTCCAAAACTTTCT+CGG | - | Chr5:12802845-12802864 | None:intergenic | 30.0% | |
| GTATAAGTTGTCAAGATTGT+GGG | + | Chr5:12802444-12802463 | MsG0580025011.01.T01:CDS | 30.0% | |
| TAACTATTATTCCCATGATC+TGG | - | Chr5:12803465-12803484 | None:intergenic | 30.0% | |
| TATTCAACAGCTGTAAACAT+TGG | + | Chr5:12803402-12803421 | MsG0580025011.01.T01:CDS | 30.0% | |
| TCATAAAAAAGGGCTATTAG+AGG | + | Chr5:12803290-12803309 | MsG0580025011.01.T01:intron | 30.0% | |
| TTATACCAGAATTCTGTTGT+TGG | - | Chr5:12802200-12802219 | None:intergenic | 30.0% | |
| ! | CTTCTGAAAAAGATAAGTGA+AGG | + | Chr5:12802817-12802836 | MsG0580025011.01.T01:intron | 30.0% |
| !! | AAACTCATGTTAAGAGTACT+TGG | + | Chr5:12802537-12802556 | MsG0580025011.01.T01:CDS | 30.0% |
| !! | AACTCATGTTAAGAGTACTT+GGG | + | Chr5:12802538-12802557 | MsG0580025011.01.T01:CDS | 30.0% |
| !!! | ATGGCTGGTTTATTTTCATT+AGG | + | Chr5:12802137-12802156 | MsG0580025011.01.T01:CDS | 30.0% |
| AATGAATGGGATCAATGACA+GGG | + | Chr5:12802933-12802952 | MsG0580025011.01.T01:intron | 35.0% | |
| ATGATTATGGTCCAGATCAT+GGG | + | Chr5:12803451-12803470 | MsG0580025011.01.T01:CDS | 35.0% | |
| CAAGTTCTACATCTCATATG+AGG | - | Chr5:12802491-12802510 | None:intergenic | 35.0% | |
| CCATGTTGTTGAGATGATTT+AGG | - | Chr5:12802611-12802630 | None:intergenic | 35.0% | |
| CCTAAATCATCTCAACAACA+TGG | + | Chr5:12802608-12802627 | MsG0580025011.01.T01:CDS | 35.0% | |
| GAATAGATCTACTGTGTTTG+TGG | + | Chr5:12802400-12802419 | MsG0580025011.01.T01:CDS | 35.0% | |
| GACAGAAGAGATAAGGTTTA+AGG | - | Chr5:12803550-12803569 | None:intergenic | 35.0% | |
| GGTATAAGTTGTCAAGATTG+TGG | + | Chr5:12802443-12802462 | MsG0580025011.01.T01:CDS | 35.0% | |
| TATGATTATGGTCCAGATCA+TGG | + | Chr5:12803450-12803469 | MsG0580025011.01.T01:CDS | 35.0% | |
| TGTTGTTCTGACGAATGAAT+GGG | + | Chr5:12802920-12802939 | MsG0580025011.01.T01:intron | 35.0% | |
| ! | AGTGTTGTTGATGTTGATGT+TGG | - | Chr5:12802277-12802296 | None:intergenic | 35.0% |
| !! | AAAGTAGTGTTGTTGGTTTG+TGG | - | Chr5:12803026-12803045 | None:intergenic | 35.0% |
| !! | AGAACTTGTTGTAAGAGTAG+AGG | + | Chr5:12802503-12802522 | MsG0580025011.01.T01:CDS | 35.0% |
| !! | GTTGTTTCTAATTCATACCG+TGG | + | Chr5:12802236-12802255 | MsG0580025011.01.T01:CDS | 35.0% |
| AAGAATTGCGTACCACTAGA+AGG | - | Chr5:12803645-12803664 | None:intergenic | 40.0% | |
| AATTCCTTCATGCCTTCTAG+TGG | + | Chr5:12803630-12803649 | MsG0580025011.01.T01:CDS | 40.0% | |
| AGCTGTGAAAGTAGTGTTGT+TGG | - | Chr5:12803033-12803052 | None:intergenic | 40.0% | |
| ATGAAGGAATTAAGTGGAGC+TGG | - | Chr5:12803621-12803640 | None:intergenic | 40.0% | |
| CAACAAGATCTTTACTCCTC+TGG | + | Chr5:12802332-12802351 | MsG0580025011.01.T01:CDS | 40.0% | |
| CAACAGCTGTAAACATTGGA+GGG | + | Chr5:12803406-12803425 | MsG0580025011.01.T01:CDS | 40.0% | |
| GAATGAATGGGATCAATGAC+AGG | + | Chr5:12802932-12802951 | MsG0580025011.01.T01:intron | 40.0% | |
| GAGTGTACCACTAGAATTAG+AGG | - | Chr5:12803508-12803527 | None:intergenic | 40.0% | |
| GGTTCCAAATCTCAAAACCA+CGG | - | Chr5:12802256-12802275 | None:intergenic | 40.0% | |
| TAAACGAGTGCAAGCTAAAG+AGG | - | Chr5:12802660-12802679 | None:intergenic | 40.0% | |
| TCAACAGCTGTAAACATTGG+AGG | + | Chr5:12803405-12803424 | MsG0580025011.01.T01:CDS | 40.0% | |
| TCAGAAGAACAAACCCTAGT+AGG | - | Chr5:12802377-12802396 | None:intergenic | 40.0% | |
| ! | GAAGGCATGAAGGAATTAAG+TGG | - | Chr5:12803627-12803646 | None:intergenic | 40.0% |
| ! | GTGTTGTTCTGACGAATGAA+TGG | + | Chr5:12802919-12802938 | MsG0580025011.01.T01:intron | 40.0% |
| ! | TCGTCAGAACAACACTGTTT+TGG | - | Chr5:12802914-12802933 | None:intergenic | 40.0% |
| !! | ACTAGAATTAGAGGCGTTTC+CGG | - | Chr5:12803499-12803518 | None:intergenic | 40.0% |
| !!! | ATTGGAGGGCATGTTTTTAG+AGG | + | Chr5:12803420-12803439 | MsG0580025011.01.T01:CDS | 40.0% |
| !!! | CATACCGTGGTTTTGAGATT+TGG | + | Chr5:12802249-12802268 | MsG0580025011.01.T01:CDS | 40.0% |
| !!! | TGAAGGTACCGAGAAAGTTT+TGG | + | Chr5:12802834-12802853 | MsG0580025011.01.T01:intron | 40.0% |
| AGAGTGAGTGAAGGGTTTGT+AGG | - | Chr5:12802683-12802702 | None:intergenic | 45.0% | |
| CATCAGGGACAGAAGAGATA+AGG | - | Chr5:12803557-12803576 | None:intergenic | 45.0% | |
| CTAGTGGTACACTCCTTGAA+GGG | + | Chr5:12803514-12803533 | MsG0580025011.01.T01:CDS | 45.0% | |
| CTTTCTCTTCTTCTAGCAGC+AGG | - | Chr5:12802566-12802585 | None:intergenic | 45.0% | |
| GGAAACGCCTCTAATTCTAG+TGG | + | Chr5:12803498-12803517 | MsG0580025011.01.T01:CDS | 45.0% | |
| GGAGCTGGATACAAAGAAGA+AGG | - | Chr5:12803606-12803625 | None:intergenic | 45.0% | |
| TAGTGGTACACTCCTTGAAG+GGG | + | Chr5:12803515-12803534 | MsG0580025011.01.T01:CDS | 45.0% | |
| TCTACTGTGTTTGTGGGAAG+TGG | + | Chr5:12802407-12802426 | MsG0580025011.01.T01:CDS | 45.0% | |
| TCTAGTGGTACACTCCTTGA+AGG | + | Chr5:12803513-12803532 | MsG0580025011.01.T01:CDS | 45.0% | |
| TGAATTCTCCAGCAGAGTTC+AGG | + | Chr5:12803334-12803353 | MsG0580025011.01.T01:CDS | 45.0% | |
| ! | GGAGATGAATTTTCCAGCTG+TGG | + | Chr5:12803311-12803330 | MsG0580025011.01.T01:CDS | 45.0% |
| ! | TGTGGAAGAGTGAGTGTTGT+TGG | - | Chr5:12803008-12803027 | None:intergenic | 45.0% |
| !! | CTCAGTTGATGAGAACGAAG+AGG | + | Chr5:12803371-12803390 | MsG0580025011.01.T01:CDS | 45.0% |
| !! | TACTCCTCTGGTGTTGTGTT+AGG | + | Chr5:12802344-12802363 | MsG0580025011.01.T01:CDS | 45.0% |
| !! | TCTGGTGTTGTGTTAGGAGT+GGG | + | Chr5:12802350-12802369 | MsG0580025011.01.T01:CDS | 45.0% |
| CACTCCTAACACAACACCAG+AGG | - | Chr5:12802351-12802370 | None:intergenic | 50.0% | |
| CTGAAGGGAGAGTGAGTGAA+GGG | - | Chr5:12802691-12802710 | None:intergenic | 50.0% | |
| GTGTTTGTGGGAAGTGGAAG+TGG | + | Chr5:12802413-12802432 | MsG0580025011.01.T01:CDS | 50.0% | |
| GTTAGGAGTGGGACCTACTA+GGG | + | Chr5:12802361-12802380 | MsG0580025011.01.T01:CDS | 50.0% | |
| TCCCTGATGCTACTGCTGTT+GGG | + | Chr5:12803568-12803587 | MsG0580025011.01.T01:CDS | 50.0% | |
| TGTTAGGAGTGGGACCTACT+AGG | + | Chr5:12802360-12802379 | MsG0580025011.01.T01:CDS | 50.0% | |
| ! | CGTACCACTAGAAGGCATGA+AGG | - | Chr5:12803637-12803656 | None:intergenic | 50.0% |
| !! | CTCTGGTGTTGTGTTAGGAG+TGG | + | Chr5:12802349-12802368 | MsG0580025011.01.T01:CDS | 50.0% |
| CCCCAACAGCAGTAGCATCA+GGG | - | Chr5:12803572-12803591 | None:intergenic | 55.0% | |
| CCCTGATGCTACTGCTGTTG+GGG | + | Chr5:12803569-12803588 | MsG0580025011.01.T01:CDS | 55.0% | |
| GCTGAAGGGAGAGTGAGTGA+AGG | - | Chr5:12802692-12802711 | None:intergenic | 55.0% | |
| GCTGGAGAATTCACCACAGC+TGG | - | Chr5:12803327-12803346 | None:intergenic | 55.0% | |
| GGAAGTGGAAGTGGAAGTGG+AGG | + | Chr5:12802422-12802441 | MsG0580025011.01.T01:CDS | 55.0% | |
| GTCCCTGATGCTACTGCTGT+TGG | + | Chr5:12803567-12803586 | MsG0580025011.01.T01:CDS | 55.0% | |
| GTGGGAAGTGGAAGTGGAAG+TGG | + | Chr5:12802419-12802438 | MsG0580025011.01.T01:CDS | 55.0% | |
| TCACTCACTCTCCCTTCAGC+AGG | + | Chr5:12802692-12802711 | MsG0580025011.01.T01:CDS | 55.0% | |
| TCCCCAACAGCAGTAGCATC+AGG | - | Chr5:12803573-12803592 | None:intergenic | 55.0% | |
| TGGTACACTCCTTGAAGGGG+TGG | + | Chr5:12803518-12803537 | MsG0580025011.01.T01:CDS | 55.0% | |
| CTCACGCACCTGAACTCTGC+TGG | - | Chr5:12803345-12803364 | None:intergenic | 60.0% | |
| TGTTGCTGCTGCTGCTGCTG+AGG | - | Chr5:12802317-12802336 | None:intergenic | 60.0% | |
| AGGGCTGAGCCACCCCTTCA+AGG | - | Chr5:12803530-12803549 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr5 | gene | 12802137 | 12803683 | 12802137 | ID=MsG0580025011.01;Name=MsG0580025011.01 |
| Chr5 | mRNA | 12802137 | 12803683 | 12802137 | ID=MsG0580025011.01.T01;Parent=MsG0580025011.01;Name=MsG0580025011.01.T01;_AED=0.50;_eAED=0.50;_QI=0|0|0|1|1|1|2|0|319 |
| Chr5 | exon | 12802137 | 12802713 | 12802137 | ID=MsG0580025011.01.T01:exon:3300;Parent=MsG0580025011.01.T01 |
| Chr5 | exon | 12803301 | 12803683 | 12803301 | ID=MsG0580025011.01.T01:exon:3301;Parent=MsG0580025011.01.T01 |
| Chr5 | CDS | 12802137 | 12802713 | 12802137 | ID=MsG0580025011.01.T01:cds;Parent=MsG0580025011.01.T01 |
| Chr5 | CDS | 12803301 | 12803683 | 12803301 | ID=MsG0580025011.01.T01:cds;Parent=MsG0580025011.01.T01 |
| Gene Sequence |
| Protein sequence |
