Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580025028.01.T01 | XP_003612086.1 | 87.048 | 332 | 21 | 8 | 1 | 319 | 1 | 323 | 0 | 518 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580025028.01.T01 | Q9SD40 | 43.669 | 387 | 133 | 13 | 1 | 319 | 1 | 370 | 1.90E-75 | 239 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580025028.01.T01 | G7KGA2 | 87.048 | 332 | 21 | 8 | 1 | 319 | 1 | 323 | 0.0 | 518 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0580025011.01 | MsG0580025028.01 | 0.876961 | 9.203275e-69 | 4.548431e-65 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580025028.01.T01 | MTR_5g021130 | 87.048 | 332 | 21 | 8 | 1 | 319 | 1 | 323 | 0.0 | 518 |
| MsG0580025028.01.T01 | MTR_8g076620 | 53.757 | 346 | 118 | 12 | 1 | 319 | 1 | 331 | 1.50e-94 | 283 |
| MsG0580025028.01.T01 | MTR_3g112510 | 42.138 | 318 | 150 | 11 | 1 | 314 | 1 | 288 | 2.56e-61 | 197 |
| MsG0580025028.01.T01 | MTR_5g089750 | 50.314 | 159 | 55 | 4 | 106 | 246 | 249 | 401 | 3.47e-39 | 144 |
| MsG0580025028.01.T01 | MTR_4g071110 | 44.156 | 154 | 66 | 1 | 95 | 248 | 6 | 139 | 1.97e-38 | 137 |
| MsG0580025028.01.T01 | MTR_3g014660 | 43.750 | 160 | 74 | 3 | 106 | 251 | 134 | 291 | 4.15e-38 | 138 |
| MsG0580025028.01.T01 | MTR_8g039110 | 42.857 | 168 | 76 | 3 | 106 | 254 | 124 | 290 | 4.80e-34 | 127 |
| MsG0580025028.01.T01 | MTR_1g023230 | 55.556 | 117 | 33 | 4 | 104 | 208 | 120 | 229 | 9.99e-28 | 108 |
| MsG0580025028.01.T01 | MTR_0363s0040 | 77.778 | 45 | 10 | 0 | 106 | 150 | 124 | 168 | 7.42e-21 | 90.1 |
| MsG0580025028.01.T01 | MTR_0105s0070 | 63.636 | 33 | 12 | 0 | 108 | 140 | 44 | 76 | 1.36e-11 | 60.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580025028.01.T01 | AT3G51060 | 43.669 | 387 | 133 | 13 | 1 | 319 | 1 | 370 | 1.94e-76 | 239 |
| MsG0580025028.01.T01 | AT5G66350 | 48.045 | 358 | 120 | 16 | 1 | 319 | 1 | 331 | 3.51e-75 | 234 |
| MsG0580025028.01.T01 | AT5G66350 | 48.116 | 345 | 115 | 15 | 1 | 306 | 1 | 320 | 1.02e-72 | 228 |
| MsG0580025028.01.T01 | AT5G66350 | 48.116 | 345 | 115 | 15 | 1 | 306 | 1 | 320 | 1.48e-72 | 228 |
| MsG0580025028.01.T01 | AT1G19790 | 40.437 | 366 | 148 | 14 | 1 | 318 | 1 | 344 | 3.34e-66 | 211 |
| MsG0580025028.01.T01 | AT1G19790 | 40.437 | 366 | 148 | 14 | 1 | 318 | 1 | 344 | 3.34e-66 | 211 |
| MsG0580025028.01.T01 | AT1G75520 | 51.667 | 240 | 80 | 9 | 102 | 319 | 121 | 346 | 4.64e-65 | 209 |
| MsG0580025028.01.T01 | AT4G36260 | 38.757 | 338 | 167 | 14 | 1 | 317 | 1 | 319 | 1.72e-48 | 165 |
| MsG0580025028.01.T01 | AT2G18120 | 41.961 | 255 | 87 | 10 | 1 | 248 | 6 | 206 | 3.34e-46 | 156 |
| MsG0580025028.01.T01 | AT2G18120 | 41.339 | 254 | 88 | 10 | 1 | 248 | 6 | 204 | 2.65e-44 | 151 |
| MsG0580025028.01.T01 | AT2G21400 | 52.055 | 146 | 55 | 3 | 103 | 246 | 6 | 138 | 3.72e-44 | 150 |
| MsG0580025028.01.T01 | AT2G21400 | 52.055 | 146 | 55 | 3 | 103 | 246 | 7 | 139 | 4.00e-44 | 149 |
| MsG0580025028.01.T01 | AT2G21400 | 50.676 | 148 | 39 | 3 | 103 | 246 | 6 | 123 | 2.92e-43 | 147 |
| MsG0580025028.01.T01 | AT2G21400 | 50.676 | 148 | 39 | 3 | 103 | 246 | 7 | 124 | 3.01e-43 | 147 |
| MsG0580025028.01.T01 | AT5G12330 | 45.570 | 158 | 69 | 2 | 106 | 246 | 112 | 269 | 5.86e-37 | 135 |
| MsG0580025028.01.T01 | AT5G12330 | 45.570 | 158 | 69 | 2 | 106 | 246 | 112 | 269 | 5.86e-37 | 135 |
| MsG0580025028.01.T01 | AT5G12330 | 45.570 | 158 | 69 | 2 | 106 | 246 | 199 | 356 | 1.12e-36 | 136 |
| MsG0580025028.01.T01 | AT5G33210 | 60.920 | 87 | 26 | 1 | 104 | 182 | 15 | 101 | 7.51e-29 | 107 |
| MsG0580025028.01.T01 | AT5G33210 | 60.920 | 87 | 26 | 1 | 104 | 182 | 50 | 136 | 2.41e-28 | 108 |
| MsG0580025028.01.T01 | AT3G54430 | 39.597 | 149 | 77 | 4 | 102 | 249 | 37 | 173 | 2.50e-27 | 105 |
| MsG0580025028.01.T01 | AT5G12330 | 86.957 | 46 | 6 | 0 | 106 | 151 | 112 | 157 | 6.81e-23 | 95.1 |
Find 76 sgRNAs with CRISPR-Local
Find 100 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GACAGAAGAGATAAGGTTTA+AGG | 0.199519 | 5:-12978602 | None:intergenic |
| CCATGTTGTTGAGATGATTT+AGG | 0.214641 | 5:-12977665 | None:intergenic |
| ATTCAGAGCCTTAACAAATT+AGG | 0.215692 | 5:+12978745 | MsG0580025028.01.T01:three_prime_UTR |
| TACTCCTCTGGTGTTGTGTT+AGG | 0.305453 | 5:+12977401 | MsG0580025028.01.T01:CDS |
| ATAATCCAACAACAGAATTC+TGG | 0.358326 | 5:+12977249 | MsG0580025028.01.T01:CDS |
| TCCCTGATGCTACTGCTGTT+GGG | 0.375712 | 5:+12978623 | MsG0580025028.01.T01:CDS |
| AGAGTGAGTGAAGGGTTTGT+AGG | 0.387801 | 5:-12977737 | None:intergenic |
| TTATACCAGAATTCTGTTGT+TGG | 0.398181 | 5:-12977254 | None:intergenic |
| TTGGATTATTATTATTCTGT+TGG | 0.399176 | 5:-12977235 | None:intergenic |
| TAACTATTATTCCCATGATC+TGG | 0.405584 | 5:-12978517 | None:intergenic |
| TGAATTCTCCAGCAGAGTTC+AGG | 0.409422 | 5:+12978389 | MsG0580025028.01.T01:CDS |
| TATGATTATGGTCCAGATCA+TGG | 0.413474 | 5:+12978505 | MsG0580025028.01.T01:CDS |
| TGAATGATGAATCAAGATCT+TGG | 0.413551 | 5:-12978727 | None:intergenic |
| CTTTCTCTTCTTCTAGCAGC+AGG | 0.421698 | 5:-12977620 | None:intergenic |
| GTCCCTGATGCTACTGCTGT+TGG | 0.422352 | 5:+12978622 | MsG0580025028.01.T01:CDS |
| AAACTCATGTTAAGAGTACT+TGG | 0.425175 | 5:+12977594 | MsG0580025028.01.T01:CDS |
| ACAGAAGAGATAAGGTTTAA+GGG | 0.430955 | 5:-12978601 | None:intergenic |
| GTGGGAAGTGGAAGTGGAAG+TGG | 0.430984 | 5:+12977476 | MsG0580025028.01.T01:CDS |
| TCCCCAACAGCAGTAGCATC+AGG | 0.439192 | 5:-12978625 | None:intergenic |
| TGTTAGGAGTGGGACCTACT+AGG | 0.445348 | 5:+12977417 | MsG0580025028.01.T01:CDS |
| GAGTGTACCACTAGAATTAG+AGG | 0.455284 | 5:-12978560 | None:intergenic |
| GCTGGAGAATTCACCACAGC+TGG | 0.457156 | 5:-12978379 | None:intergenic |
| GGTATAAGTTGTCAAGATTG+TGG | 0.462555 | 5:+12977500 | MsG0580025028.01.T01:CDS |
| TGGAATAGTAGTAGTATGGC+TGG | 0.464468 | 5:+12977179 | None:intergenic |
| AATAGTTACAATATGACTAC+TGG | 0.464588 | 5:+12978532 | MsG0580025028.01.T01:CDS |
| CAACAAGATCTTTACTCCTC+TGG | 0.470648 | 5:+12977389 | MsG0580025028.01.T01:CDS |
| AAGAATTGCGTACCACTAGA+AGG | 0.471301 | 5:-12978697 | None:intergenic |
| TCTAGTGGTACACTCCTTGA+AGG | 0.471939 | 5:+12978568 | MsG0580025028.01.T01:CDS |
| GAATGATGAATCAAGATCTT+GGG | 0.474567 | 5:-12978726 | None:intergenic |
| GTGTTTGTGGGAAGTGGAAG+TGG | 0.476364 | 5:+12977470 | MsG0580025028.01.T01:CDS |
| CCCTGATGCTACTGCTGTTG+GGG | 0.488129 | 5:+12978624 | MsG0580025028.01.T01:CDS |
| CTCACGCACCTGAACTCTGC+TGG | 0.492218 | 5:-12978397 | None:intergenic |
| TCTACTGTGTTTGTGGGAAG+TGG | 0.498034 | 5:+12977464 | MsG0580025028.01.T01:CDS |
| GTTAGGAGTGGGACCTACTA+GGG | 0.499651 | 5:+12977418 | MsG0580025028.01.T01:CDS |
| AGGGCTGAGCCACCCCTTCA+AGG | 0.501243 | 5:-12978582 | None:intergenic |
| CATCAGGGACAGAAGAGATA+AGG | 0.508932 | 5:-12978609 | None:intergenic |
| TCAGAAGAACAAACCCTAGT+AGG | 0.513659 | 5:-12977431 | None:intergenic |
| TCACTCACTCTCCCTTCAGC+AGG | 0.521572 | 5:+12977749 | MsG0580025028.01.T01:CDS |
| GTATAAGTTGTCAAGATTGT+GGG | 0.521679 | 5:+12977501 | MsG0580025028.01.T01:CDS |
| GAATAGATCTACTGTGTTTG+TGG | 0.527218 | 5:+12977457 | MsG0580025028.01.T01:CDS |
| CTCTGGTGTTGTGTTAGGAG+TGG | 0.527736 | 5:+12977406 | MsG0580025028.01.T01:CDS |
| TAAACGAGTGCAAGCTAAAG+AGG | 0.530926 | 5:-12977714 | None:intergenic |
| TCTGGTGTTGTGTTAGGAGT+GGG | 0.532211 | 5:+12977407 | MsG0580025028.01.T01:CDS |
| CTAGTGGTACACTCCTTGAA+GGG | 0.532650 | 5:+12978569 | MsG0580025028.01.T01:CDS |
| ATGAAGGAATTAAGTGGAGC+TGG | 0.538890 | 5:-12978673 | None:intergenic |
| AGTGTTGTTGATGTTGATGT+TGG | 0.543270 | 5:-12977331 | None:intergenic |
| AGAACTTGTTGTAAAAGTAG+AGG | 0.550532 | 5:+12977560 | MsG0580025028.01.T01:CDS |
| GGAGCTGGATACAAAGAAGA+AGG | 0.554978 | 5:-12978658 | None:intergenic |
| AATAGATCTACTGTGTTTGT+GGG | 0.559670 | 5:+12977458 | MsG0580025028.01.T01:CDS |
| TCAACAGCTGTAAACATTGG+AGG | 0.560848 | 5:+12978460 | MsG0580025028.01.T01:CDS |
| CAAGTTCTACATCTCATATG+AGG | 0.561087 | 5:-12977545 | None:intergenic |
| GAAGGCATGAAGGAATTAAG+TGG | 0.562752 | 5:-12978679 | None:intergenic |
| ATGATTATGGTCCAGATCAT+GGG | 0.563960 | 5:+12978506 | MsG0580025028.01.T01:CDS |
| GTTGTTTCTAATTCATACCG+TGG | 0.564425 | 5:+12977293 | MsG0580025028.01.T01:CDS |
| ATGAATCAAGATCTTGGGTG+GGG | 0.569684 | 5:-12978721 | None:intergenic |
| AATTCCTTCATGCCTTCTAG+TGG | 0.576741 | 5:+12978685 | MsG0580025028.01.T01:CDS |
| TGGTACACTCCTTGAAGGGG+TGG | 0.576962 | 5:+12978573 | MsG0580025028.01.T01:CDS |
| ATATATAATATACCTGCTGA+AGG | 0.587423 | 5:-12977761 | None:intergenic |
| TGATGAATCAAGATCTTGGG+TGG | 0.587902 | 5:-12978723 | None:intergenic |
| TATTCAACAGCTGTAAACAT+TGG | 0.588034 | 5:+12978457 | MsG0580025028.01.T01:CDS |
| CTGAAGGGAGAGTGAGTGAA+GGG | 0.593490 | 5:-12977745 | None:intergenic |
| CCTAAATCATCTCAACAACA+TGG | 0.595265 | 5:+12977665 | MsG0580025028.01.T01:CDS |
| CAACAGCTGTAAACATTGGA+GGG | 0.602052 | 5:+12978461 | MsG0580025028.01.T01:CDS |
| GATGAATCAAGATCTTGGGT+GGG | 0.609126 | 5:-12978722 | None:intergenic |
| CCCCAACAGCAGTAGCATCA+GGG | 0.616436 | 5:-12978624 | None:intergenic |
| CTCAGTTGATGAGAACGAAG+AGG | 0.617435 | 5:+12978426 | MsG0580025028.01.T01:CDS |
| CGTACCACTAGAAGGCATGA+AGG | 0.617919 | 5:-12978689 | None:intergenic |
| AACTCATGTTAAGAGTACTT+GGG | 0.622414 | 5:+12977595 | MsG0580025028.01.T01:CDS |
| GGAAGTGGAAGTGGAAGTGG+AGG | 0.626200 | 5:+12977479 | MsG0580025028.01.T01:CDS |
| TGAATCAAGATCTTGGGTGG+GGG | 0.629021 | 5:-12978720 | None:intergenic |
| TATATAATATACCTGCTGAA+GGG | 0.636400 | 5:-12977760 | None:intergenic |
| TAGTGGTACACTCCTTGAAG+GGG | 0.649565 | 5:+12978570 | MsG0580025028.01.T01:CDS |
| GCTGAAGGGAGAGTGAGTGA+AGG | 0.652710 | 5:-12977746 | None:intergenic |
| CACTCCTAACACAACACCAG+AGG | 0.667381 | 5:-12977405 | None:intergenic |
| GGAAACGCCTCTAATTCTAG+TGG | 0.682206 | 5:+12978553 | MsG0580025028.01.T01:CDS |
| GGTTCCAAATCTCAAAACCA+CGG | 0.709690 | 5:-12977310 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | GTTAATTATCATAAAAAAAA+GGG | + | Chr5:12978335-12978354 | MsG0580025028.01.T01:intron | 10.0% |
| !! | TGTTAATTATCATAAAAAAA+AGG | + | Chr5:12978334-12978353 | MsG0580025028.01.T01:intron | 10.0% |
| !! | TAAATATGTATATATCATCA+TGG | - | Chr5:12978279-12978298 | None:intergenic | 15.0% |
| !!! | TTTTTTTTCCTAATTTGTTA+AGG | - | Chr5:12978756-12978775 | None:intergenic | 15.0% |
| !! | AAACAAACAAACTATAAGTT+AGG | - | Chr5:12978302-12978321 | None:intergenic | 20.0% |
| !! | TTGGATTATTATTATTCTGT+TGG | - | Chr5:12977238-12977257 | None:intergenic | 20.0% |
| ! | AATAGTTACAATATGACTAC+TGG | + | Chr5:12978532-12978551 | MsG0580025028.01.T01:CDS | 25.0% |
| ! | ATAAAAAAAAGGGCTATTAG+AGG | + | Chr5:12978345-12978364 | MsG0580025028.01.T01:intron | 25.0% |
| ! | ATATATAATATACCTGCTGA+AGG | - | Chr5:12977764-12977783 | None:intergenic | 25.0% |
| ! | GACATATATGAACAAAGAAA+AGG | - | Chr5:12978114-12978133 | None:intergenic | 25.0% |
| ! | TATATAATATACCTGCTGAA+GGG | - | Chr5:12977763-12977782 | None:intergenic | 25.0% |
| !! | AGAGGAATTTTGTATGATTA+TGG | + | Chr5:12978493-12978512 | MsG0580025028.01.T01:CDS | 25.0% |
| AATAGATCTACTGTGTTTGT+GGG | + | Chr5:12977458-12977477 | MsG0580025028.01.T01:CDS | 30.0% | |
| ACAGAAGAGATAAGGTTTAA+GGG | - | Chr5:12978604-12978623 | None:intergenic | 30.0% | |
| ATAATCCAACAACAGAATTC+TGG | + | Chr5:12977249-12977268 | MsG0580025028.01.T01:CDS | 30.0% | |
| ATTCAGAGCCTTAACAAATT+AGG | + | Chr5:12978745-12978764 | MsG0580025028.01.T01:three_prime_UTR | 30.0% | |
| ATTCTCTTCCAAAACTTTCT+CGG | - | Chr5:12977899-12977918 | None:intergenic | 30.0% | |
| CATTGAATAACTCATGTATC+TGG | - | Chr5:12978184-12978203 | None:intergenic | 30.0% | |
| GAATGATGAATCAAGATCTT+GGG | - | Chr5:12978729-12978748 | None:intergenic | 30.0% | |
| GTATAAGTTGTCAAGATTGT+GGG | + | Chr5:12977501-12977520 | MsG0580025028.01.T01:CDS | 30.0% | |
| TAACTATTATTCCCATGATC+TGG | - | Chr5:12978520-12978539 | None:intergenic | 30.0% | |
| TATTCAACAGCTGTAAACAT+TGG | + | Chr5:12978457-12978476 | MsG0580025028.01.T01:CDS | 30.0% | |
| TGAATGATGAATCAAGATCT+TGG | - | Chr5:12978730-12978749 | None:intergenic | 30.0% | |
| TTATACCAGAATTCTGTTGT+TGG | - | Chr5:12977257-12977276 | None:intergenic | 30.0% | |
| ! | CTTCTGAAAAAGATAAGTGA+AGG | + | Chr5:12977871-12977890 | MsG0580025028.01.T01:intron | 30.0% |
| !! | AAACTCATGTTAAGAGTACT+TGG | + | Chr5:12977594-12977613 | MsG0580025028.01.T01:CDS | 30.0% |
| !! | AACTCATGTTAAGAGTACTT+GGG | + | Chr5:12977595-12977614 | MsG0580025028.01.T01:CDS | 30.0% |
| !! | AGAACTTGTTGTAAAAGTAG+AGG | + | Chr5:12977560-12977579 | MsG0580025028.01.T01:CDS | 30.0% |
| !!! | ATGGCTGGTTTATTTTCATT+AGG | + | Chr5:12977194-12977213 | MsG0580025028.01.T01:CDS | 30.0% |
| AATGAATGGGATCAATGACA+GGG | + | Chr5:12977987-12978006 | MsG0580025028.01.T01:intron | 35.0% | |
| ATGATTATGGTCCAGATCAT+GGG | + | Chr5:12978506-12978525 | MsG0580025028.01.T01:CDS | 35.0% | |
| CAAGTTCTACATCTCATATG+AGG | - | Chr5:12977548-12977567 | None:intergenic | 35.0% | |
| CCATGTTGTTGAGATGATTT+AGG | - | Chr5:12977668-12977687 | None:intergenic | 35.0% | |
| CCTAAATCATCTCAACAACA+TGG | + | Chr5:12977665-12977684 | MsG0580025028.01.T01:CDS | 35.0% | |
| GAATAGATCTACTGTGTTTG+TGG | + | Chr5:12977457-12977476 | MsG0580025028.01.T01:CDS | 35.0% | |
| GACAGAAGAGATAAGGTTTA+AGG | - | Chr5:12978605-12978624 | None:intergenic | 35.0% | |
| GGTATAAGTTGTCAAGATTG+TGG | + | Chr5:12977500-12977519 | MsG0580025028.01.T01:CDS | 35.0% | |
| TATGATTATGGTCCAGATCA+TGG | + | Chr5:12978505-12978524 | MsG0580025028.01.T01:CDS | 35.0% | |
| TGTTGTTCTGACGAATGAAT+GGG | + | Chr5:12977974-12977993 | MsG0580025028.01.T01:intron | 35.0% | |
| ! | AGTGTTGTTGATGTTGATGT+TGG | - | Chr5:12977334-12977353 | None:intergenic | 35.0% |
| !! | AAAGTAGTGTTGTTGGTTTG+TGG | - | Chr5:12978080-12978099 | None:intergenic | 35.0% |
| !! | GTTGTTTCTAATTCATACCG+TGG | + | Chr5:12977293-12977312 | MsG0580025028.01.T01:CDS | 35.0% |
| AAGAATTGCGTACCACTAGA+AGG | - | Chr5:12978700-12978719 | None:intergenic | 40.0% | |
| AATTCCTTCATGCCTTCTAG+TGG | + | Chr5:12978685-12978704 | MsG0580025028.01.T01:CDS | 40.0% | |
| AGCTGTGAAAGTAGTGTTGT+TGG | - | Chr5:12978087-12978106 | None:intergenic | 40.0% | |
| ATGAAGGAATTAAGTGGAGC+TGG | - | Chr5:12978676-12978695 | None:intergenic | 40.0% | |
| ATGAATCAAGATCTTGGGTG+GGG | - | Chr5:12978724-12978743 | None:intergenic | 40.0% | |
| CAACAAGATCTTTACTCCTC+TGG | + | Chr5:12977389-12977408 | MsG0580025028.01.T01:CDS | 40.0% | |
| CAACAGCTGTAAACATTGGA+GGG | + | Chr5:12978461-12978480 | MsG0580025028.01.T01:CDS | 40.0% | |
| GAATGAATGGGATCAATGAC+AGG | + | Chr5:12977986-12978005 | MsG0580025028.01.T01:intron | 40.0% | |
| GAGTGTACCACTAGAATTAG+AGG | - | Chr5:12978563-12978582 | None:intergenic | 40.0% | |
| GATGAATCAAGATCTTGGGT+GGG | - | Chr5:12978725-12978744 | None:intergenic | 40.0% | |
| GGTTCCAAATCTCAAAACCA+CGG | - | Chr5:12977313-12977332 | None:intergenic | 40.0% | |
| TAAACGAGTGCAAGCTAAAG+AGG | - | Chr5:12977717-12977736 | None:intergenic | 40.0% | |
| TCAACAGCTGTAAACATTGG+AGG | + | Chr5:12978460-12978479 | MsG0580025028.01.T01:CDS | 40.0% | |
| TCAGAAGAACAAACCCTAGT+AGG | - | Chr5:12977434-12977453 | None:intergenic | 40.0% | |
| TGATGAATCAAGATCTTGGG+TGG | - | Chr5:12978726-12978745 | None:intergenic | 40.0% | |
| ! | GAAGGCATGAAGGAATTAAG+TGG | - | Chr5:12978682-12978701 | None:intergenic | 40.0% |
| ! | GTGTTGTTCTGACGAATGAA+TGG | + | Chr5:12977973-12977992 | MsG0580025028.01.T01:intron | 40.0% |
| ! | TCGTCAGAACAACACTGTTT+TGG | - | Chr5:12977968-12977987 | None:intergenic | 40.0% |
| !!! | ATTGGAGGGCATGTTTTTAG+AGG | + | Chr5:12978475-12978494 | MsG0580025028.01.T01:CDS | 40.0% |
| !!! | CATACCGTGGTTTTGAGATT+TGG | + | Chr5:12977306-12977325 | MsG0580025028.01.T01:CDS | 40.0% |
| !!! | TGAAGGTACCGAGAAAGTTT+TGG | + | Chr5:12977888-12977907 | MsG0580025028.01.T01:intron | 40.0% |
| AGAGTGAGTGAAGGGTTTGT+AGG | - | Chr5:12977740-12977759 | None:intergenic | 45.0% | |
| CATCAGGGACAGAAGAGATA+AGG | - | Chr5:12978612-12978631 | None:intergenic | 45.0% | |
| CTAGTGGTACACTCCTTGAA+GGG | + | Chr5:12978569-12978588 | MsG0580025028.01.T01:CDS | 45.0% | |
| CTTTCTCTTCTTCTAGCAGC+AGG | - | Chr5:12977623-12977642 | None:intergenic | 45.0% | |
| GGAAACGCCTCTAATTCTAG+TGG | + | Chr5:12978553-12978572 | MsG0580025028.01.T01:CDS | 45.0% | |
| GGAGCTGGATACAAAGAAGA+AGG | - | Chr5:12978661-12978680 | None:intergenic | 45.0% | |
| TAGTGGTACACTCCTTGAAG+GGG | + | Chr5:12978570-12978589 | MsG0580025028.01.T01:CDS | 45.0% | |
| TCTACTGTGTTTGTGGGAAG+TGG | + | Chr5:12977464-12977483 | MsG0580025028.01.T01:CDS | 45.0% | |
| TCTAGTGGTACACTCCTTGA+AGG | + | Chr5:12978568-12978587 | MsG0580025028.01.T01:CDS | 45.0% | |
| TGAATCAAGATCTTGGGTGG+GGG | - | Chr5:12978723-12978742 | None:intergenic | 45.0% | |
| TGAATTCTCCAGCAGAGTTC+AGG | + | Chr5:12978389-12978408 | MsG0580025028.01.T01:CDS | 45.0% | |
| ! | GGAGATGAATTTTCCAGCTG+TGG | + | Chr5:12978366-12978385 | MsG0580025028.01.T01:CDS | 45.0% |
| ! | TGTGGAAGAGTGAGTGTTGT+TGG | - | Chr5:12978062-12978081 | None:intergenic | 45.0% |
| !! | CTCAGTTGATGAGAACGAAG+AGG | + | Chr5:12978426-12978445 | MsG0580025028.01.T01:CDS | 45.0% |
| !! | TACTCCTCTGGTGTTGTGTT+AGG | + | Chr5:12977401-12977420 | MsG0580025028.01.T01:CDS | 45.0% |
| !! | TCTGGTGTTGTGTTAGGAGT+GGG | + | Chr5:12977407-12977426 | MsG0580025028.01.T01:CDS | 45.0% |
| CACTCCTAACACAACACCAG+AGG | - | Chr5:12977408-12977427 | None:intergenic | 50.0% | |
| CTGAAGGGAGAGTGAGTGAA+GGG | - | Chr5:12977748-12977767 | None:intergenic | 50.0% | |
| GTGTTTGTGGGAAGTGGAAG+TGG | + | Chr5:12977470-12977489 | MsG0580025028.01.T01:CDS | 50.0% | |
| GTTAGGAGTGGGACCTACTA+GGG | + | Chr5:12977418-12977437 | MsG0580025028.01.T01:CDS | 50.0% | |
| TCCCTGATGCTACTGCTGTT+GGG | + | Chr5:12978623-12978642 | MsG0580025028.01.T01:CDS | 50.0% | |
| TGTTAGGAGTGGGACCTACT+AGG | + | Chr5:12977417-12977436 | MsG0580025028.01.T01:CDS | 50.0% | |
| ! | CGTACCACTAGAAGGCATGA+AGG | - | Chr5:12978692-12978711 | None:intergenic | 50.0% |
| !! | CTCTGGTGTTGTGTTAGGAG+TGG | + | Chr5:12977406-12977425 | MsG0580025028.01.T01:CDS | 50.0% |
| CCCCAACAGCAGTAGCATCA+GGG | - | Chr5:12978627-12978646 | None:intergenic | 55.0% | |
| CCCTGATGCTACTGCTGTTG+GGG | + | Chr5:12978624-12978643 | MsG0580025028.01.T01:CDS | 55.0% | |
| GCTGAAGGGAGAGTGAGTGA+AGG | - | Chr5:12977749-12977768 | None:intergenic | 55.0% | |
| GCTGGAGAATTCACCACAGC+TGG | - | Chr5:12978382-12978401 | None:intergenic | 55.0% | |
| GGAAGTGGAAGTGGAAGTGG+AGG | + | Chr5:12977479-12977498 | MsG0580025028.01.T01:CDS | 55.0% | |
| GTCCCTGATGCTACTGCTGT+TGG | + | Chr5:12978622-12978641 | MsG0580025028.01.T01:CDS | 55.0% | |
| GTGGGAAGTGGAAGTGGAAG+TGG | + | Chr5:12977476-12977495 | MsG0580025028.01.T01:CDS | 55.0% | |
| TCACTCACTCTCCCTTCAGC+AGG | + | Chr5:12977749-12977768 | MsG0580025028.01.T01:CDS | 55.0% | |
| TCCCCAACAGCAGTAGCATC+AGG | - | Chr5:12978628-12978647 | None:intergenic | 55.0% | |
| TGGTACACTCCTTGAAGGGG+TGG | + | Chr5:12978573-12978592 | MsG0580025028.01.T01:CDS | 55.0% | |
| CTCACGCACCTGAACTCTGC+TGG | - | Chr5:12978400-12978419 | None:intergenic | 60.0% | |
| TGTTGCTGCTGCTGCTGCTG+AGG | - | Chr5:12977374-12977393 | None:intergenic | 60.0% | |
| AGGGCTGAGCCACCCCTTCA+AGG | - | Chr5:12978585-12978604 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr5 | gene | 12977194 | 12978810 | 12977194 | ID=MsG0580025028.01;Name=MsG0580025028.01 |
| Chr5 | mRNA | 12977194 | 12978810 | 12977194 | ID=MsG0580025028.01.T01;Parent=MsG0580025028.01;Name=MsG0580025028.01.T01;_AED=0.50;_eAED=0.50;_QI=0|1|0.5|1|1|1|2|72|319 |
| Chr5 | exon | 12977194 | 12977770 | 12977194 | ID=MsG0580025028.01.T01:exon:20207;Parent=MsG0580025028.01.T01 |
| Chr5 | exon | 12978356 | 12978810 | 12978356 | ID=MsG0580025028.01.T01:exon:20208;Parent=MsG0580025028.01.T01 |
| Chr5 | CDS | 12977194 | 12977770 | 12977194 | ID=MsG0580025028.01.T01:cds;Parent=MsG0580025028.01.T01 |
| Chr5 | CDS | 12978356 | 12978738 | 12978356 | ID=MsG0580025028.01.T01:cds;Parent=MsG0580025028.01.T01 |
| Chr5 | three_prime_UTR | 12978739 | 12978810 | 12978739 | ID=MsG0580025028.01.T01:three_prime_utr;Parent=MsG0580025028.01.T01 |
| Gene Sequence |
| Protein sequence |
