AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0580025157.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0580025157.01.T01 MTR_5g023260 99.438 534 3 0 1 534 1 534 0.0 1085
MsG0580025157.01.T01 MTR_5g023240 83.527 516 79 4 21 534 1 512 0.0 875
MsG0580025157.01.T01 MTR_3g115090 58.189 519 189 6 25 533 10 510 0.0 615
MsG0580025157.01.T01 MTR_2g012470 56.357 527 202 5 19 534 11 520 0.0 580
MsG0580025157.01.T01 MTR_4g075750 49.116 509 237 10 37 533 3 501 1.78e-163 474
MsG0580025157.01.T01 MTR_2g101920 36.508 441 265 7 61 500 3 429 5.93e-92 289
MsG0580025157.01.T01 MTR_6g022790 34.858 459 279 8 75 532 16 455 2.34e-87 277
MsG0580025157.01.T01 MTR_8g080120 34.483 435 271 7 99 532 15 436 9.17e-82 262
MsG0580025157.01.T01 MTR_7g038910 35.666 443 271 6 91 532 14 443 1.48e-80 259
MsG0580025157.01.T01 MTR_6g023065 34.707 461 284 7 76 532 16 463 6.55e-80 258
MsG0580025157.01.T01 MTR_4g103890 35.539 408 249 7 106 512 9 403 7.86e-80 256
MsG0580025157.01.T01 MTR_5g054730 35.308 439 270 5 94 531 13 438 5.23e-78 252
MsG0580025157.01.T01 MTR_6g022780 35.991 439 266 8 96 532 3 428 3.48e-77 249
MsG0580025157.01.T01 MTR_6g023075 35.535 439 268 8 96 532 3 428 1.61e-74 243
MsG0580025157.01.T01 MTR_7g038910 36.986 365 217 5 91 455 14 365 3.32e-74 241
MsG0580025157.01.T01 MTR_7g038910 37.394 353 208 5 91 443 14 353 4.13e-73 237
MsG0580025157.01.T01 MTR_1g093030 34.977 426 263 5 107 531 24 436 1.23e-71 235
MsG0580025157.01.T01 MTR_1g093020 35.198 429 260 7 107 532 24 437 4.85e-71 234
MsG0580025157.01.T01 MTR_1g093020 36.250 400 237 7 107 503 24 408 5.04e-71 233
MsG0580025157.01.T01 MTR_3g085820 35.933 359 217 6 99 457 25 370 2.13e-69 228
MsG0580025157.01.T01 MTR_2g096830 34.722 432 267 7 103 532 10 428 8.05e-68 225
MsG0580025157.01.T01 MTR_3g005740 32.874 435 282 4 99 532 44 469 1.20e-66 223
MsG0580025157.01.T01 MTR_0531s0020 35.043 351 212 7 81 428 20 357 8.44e-62 207
MsG0580025157.01.T01 MTR_2g096830 36.957 322 190 5 103 424 10 318 1.55e-58 198
MsG0580025157.01.T01 MTR_8g099320 25.653 421 275 12 96 499 16 415 7.56e-30 122
MsG0580025157.01.T01 MTR_4g055610 26.596 470 289 16 94 531 14 459 1.11e-29 122
MsG0580025157.01.T01 MTR_4g073520 24.837 459 287 17 107 523 59 501 5.81e-23 102
MsG0580025157.01.T01 MTR_1g070470 25.909 440 291 14 107 533 22 439 1.87e-22 100
MsG0580025157.01.T01 MTR_4g073520 24.837 459 287 17 107 523 59 501 2.65e-22 100
MsG0580025157.01.T01 MTR_1g492640 25.885 452 294 15 99 532 51 479 3.52e-22 100
MsG0580025157.01.T01 MTR_1g105980 25.747 435 266 15 108 501 23 441 2.54e-21 97.4
MsG0580025157.01.T01 MTR_1g105990 24.667 450 293 13 108 522 22 460 3.53e-21 97.1
MsG0580025157.01.T01 MTR_3g096800 23.733 434 291 12 93 498 19 440 3.55e-21 97.1
MsG0580025157.01.T01 MTR_3g096830 24.153 443 272 17 91 496 14 429 8.39e-21 95.9
MsG0580025157.01.T01 MTR_1g105995 24.190 463 302 14 107 534 21 469 1.14e-20 95.5
MsG0580025157.01.T01 MTR_3g110660 25.986 431 256 17 108 496 34 443 1.36e-20 95.1
MsG0580025157.01.T01 MTR_1g106000 24.729 461 287 18 107 522 15 460 3.36e-20 94.0
MsG0580025157.01.T01 MTR_1g492640 27.914 326 208 12 99 418 33 337 2.96e-19 90.1
MsG0580025157.01.T01 MTR_1g492640 27.914 326 208 12 99 418 51 355 5.12e-19 89.4
MsG0580025157.01.T01 MTR_1g007380 24.499 449 286 14 107 518 23 455 3.24e-18 87.8
MsG0580025157.01.T01 MTR_8g094290 24.838 463 287 18 108 533 32 470 4.26e-18 87.4
MsG0580025157.01.T01 MTR_3g088455 24.183 459 298 17 107 533 34 474 4.75e-18 87.4
MsG0580025157.01.T01 MTR_1g007270 24.494 445 284 13 107 519 33 457 5.38e-18 87.0
MsG0580025157.01.T01 MTR_3g088475 23.427 461 300 16 107 533 34 475 6.95e-18 87.0
MsG0580025157.01.T01 MTR_5g096850 24.000 450 290 14 108 522 26 458 1.66e-17 85.5
MsG0580025157.01.T01 MTR_3g096840 23.799 437 285 13 108 512 40 460 8.91e-17 83.6
MsG0580025157.01.T01 MTR_4g104510 24.586 362 232 13 138 487 71 403 1.47e-16 82.4
MsG0580025157.01.T01 MTR_1g029750 25.412 425 265 17 108 496 36 444 1.48e-15 79.7
MsG0580025157.01.T01 MTR_5g096840 22.824 425 274 14 108 496 30 436 9.30e-15 77.0
MsG0580025157.01.T01 MTR_1g492640 26.036 338 212 12 211 532 32 347 9.93e-15 76.3
MsG0580025157.01.T01 MTR_3g110420 24.215 446 295 14 107 521 24 457 1.77e-14 76.3
MsG0580025157.01.T01 MTR_1g007180 24.229 454 283 19 107 521 12 443 5.96e-13 71.2
MsG0580025157.01.T01 MTR_3g461440 21.770 418 288 12 107 496 23 429 8.04e-11 64.7
MsG0580025157.01.T01 MTR_5g081630 24.552 391 248 15 138 511 4 364 8.24e-11 64.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0580025157.01.T01 AT1G47670 57.224 526 195 4 19 533 11 517 0.0 577
MsG0580025157.01.T01 AT4G35180 47.955 440 218 4 97 533 47 478 1.81e-142 419
MsG0580025157.01.T01 AT4G35180 51.079 278 125 4 97 371 47 316 1.08e-94 292
MsG0580025157.01.T01 AT5G40780 35.874 446 272 7 88 532 14 446 2.29e-89 282
MsG0580025157.01.T01 AT1G24400 37.471 435 258 7 99 532 20 441 3.28e-87 276
MsG0580025157.01.T01 AT1G61270 37.108 415 249 6 99 512 25 428 6.04e-86 273
MsG0580025157.01.T01 AT3G01760 38.333 420 245 7 95 512 20 427 1.77e-85 272
MsG0580025157.01.T01 AT1G48640 36.099 446 268 7 91 532 21 453 9.82e-85 270
MsG0580025157.01.T01 AT1G67640 36.585 451 270 7 83 532 6 441 4.92e-84 268
MsG0580025157.01.T01 AT5G40780 35.854 410 249 6 124 532 2 398 9.81e-79 253
MsG0580025157.01.T01 AT5G40780 35.854 410 249 6 124 532 2 398 9.81e-79 253
MsG0580025157.01.T01 AT1G25530 35.520 442 271 7 91 531 11 439 3.06e-73 239
MsG0580025157.01.T01 AT1G71680 32.381 420 270 6 94 512 22 428 3.37e-59 203
MsG0580025157.01.T01 AT1G71680 32.857 350 222 5 94 443 22 358 2.78e-51 179
MsG0580025157.01.T01 AT5G41800 24.943 437 265 14 92 499 12 414 1.76e-24 106
MsG0580025157.01.T01 AT1G08230 26.606 436 296 12 99 523 19 441 3.30e-23 102
MsG0580025157.01.T01 AT5G09220 24.190 463 294 14 108 533 46 488 6.34e-20 93.2
MsG0580025157.01.T01 AT1G10010 25.115 434 259 16 106 496 26 436 6.45e-18 87.0
MsG0580025157.01.T01 AT1G10010 25.115 434 259 16 106 496 27 437 6.66e-18 87.0
MsG0580025157.01.T01 AT1G08230 26.316 323 219 9 211 525 32 343 5.04e-17 83.2
MsG0580025157.01.T01 AT1G08230 26.316 323 219 9 211 525 13 324 8.53e-17 82.0
MsG0580025157.01.T01 AT1G08230 26.316 323 219 9 211 525 13 324 8.53e-17 82.0
MsG0580025157.01.T01 AT1G08230 26.316 323 219 9 211 525 13 324 8.53e-17 82.0
MsG0580025157.01.T01 AT5G63850 22.738 431 271 16 107 496 18 427 1.79e-16 82.4
MsG0580025157.01.T01 AT1G44100 23.709 426 276 15 108 496 28 441 3.05e-15 78.6
MsG0580025157.01.T01 AT2G39890 24.832 447 300 17 96 531 18 439 6.66e-14 74.3
MsG0580025157.01.T01 AT2G39890 24.832 447 300 17 96 531 18 439 6.66e-14 74.3
MsG0580025157.01.T01 AT1G58360 23.202 431 271 15 106 496 35 445 1.12e-13 73.9
MsG0580025157.01.T01 AT5G49630 22.989 435 269 15 106 496 31 443 1.48e-13 73.6
MsG0580025157.01.T01 AT2G39890 24.688 401 271 14 138 531 4 380 7.81e-13 70.5
MsG0580025157.01.T01 AT2G36590 24.057 424 286 18 99 511 15 413 3.54e-12 68.9

Find 146 sgRNAs with CRISPR-Local

Find 274 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCTGTTGCATTCACTATTCT+TGG 0.133566 5:-14610295 MsG0580025157.01.T01:CDS
CCTTGGCTATTGGTGGCTAT+TGG 0.157481 5:-14607207 MsG0580025157.01.T01:CDS
TTGTGTTCATTTCAAATATA+TGG 0.204985 5:-14606878 MsG0580025157.01.T01:CDS
ATTGGTGGCTATTGGGCTTA+TGG 0.231210 5:-14607199 MsG0580025157.01.T01:CDS
ATACGTCTTGAGAATGAAAT+TGG 0.232180 5:+14606948 None:intergenic
CTTGGTGTTCTAGGAGTCTT+TGG 0.232216 5:+14610499 None:intergenic
CTTGGCTATTGGTGGCTATT+GGG 0.251024 5:-14607206 MsG0580025157.01.T01:CDS
TTTCCTGTTCTAGGTGTTAT+TGG 0.254819 5:+14610658 None:intergenic
ATCAATGAATTTCCTGTTCT+AGG 0.255222 5:+14610649 None:intergenic
TATGGCAACTTTACACCTTA+TGG 0.256418 5:-14609457 MsG0580025157.01.T01:CDS
CACATGAAACTATACTTCTT+TGG 0.264258 5:+14606635 None:intergenic
TGCTTGTTTCCCTTGGCTAT+TGG 0.264495 5:-14607217 MsG0580025157.01.T01:CDS
CAATCTCATCCTTGAAATTC+AGG 0.265867 5:-14608695 MsG0580025157.01.T01:intron
AAAGACATTCTTGGTGTTCT+AGG 0.269352 5:+14610490 None:intergenic
CCAAGGTTTATTACCCCTTT+AGG 0.287596 5:-14610463 MsG0580025157.01.T01:CDS
CCAGCAATTGAATTCAAGTT+TGG 0.302402 5:+14608898 None:intergenic
GTCTTTGGAGTCTTACTCTT+AGG 0.304995 5:+14610514 None:intergenic
TAGGGTATTGTACTTCCATT+TGG 0.305650 5:-14608846 MsG0580025157.01.T01:CDS
TCTAGCTTAGCTGGTTTGAT+TGG 0.313859 5:-14606719 MsG0580025157.01.T01:CDS
CAACTCTGCTTCGCTACTTT+CGG 0.322307 5:-14609377 MsG0580025157.01.T01:intron
GTGGCACAGGGTGCCCTACC+AGG 0.326991 5:-14608814 MsG0580025157.01.T01:CDS
AATTGGTTCTTGGGAACATT+TGG 0.327930 5:-14606605 MsG0580025157.01.T01:CDS
ATATATGTTATTATTGATAC+TGG 0.331686 5:-14606548 MsG0580025157.01.T01:CDS
TGCTGCCTGCTTGTTTCCCT+TGG 0.332423 5:-14607224 MsG0580025157.01.T01:CDS
GTGGTATCTCAATTGGTTCT+TGG 0.332666 5:-14606615 MsG0580025157.01.T01:CDS
CATACTCTTTGTTCTGGGAT+TGG 0.334223 5:-14610337 MsG0580025157.01.T01:CDS
TTCAACAGTGGTCATAGGTT+TGG 0.334863 5:+14608966 None:intergenic
CCAAACTTGAATTCAATTGC+TGG 0.337824 5:-14608898 MsG0580025157.01.T01:CDS
TCAACAGTGGTCATAGGTTT+GGG 0.343412 5:+14608967 None:intergenic
AGTCTCAAAGCTTTCCTCAT+AGG 0.356764 5:+14610436 None:intergenic
TCAAGTTTGGTAACTGAGAT+AGG 0.359952 5:+14608911 None:intergenic
CTTGGTGTCAAAGACATTCT+TGG 0.361003 5:+14610481 None:intergenic
CCTGCTGATAGGTACAATAT+TGG 0.367863 5:+14609069 None:intergenic
ATTGCTGGAATTTCCCTCAT+TGG 0.374012 5:-14608883 MsG0580025157.01.T01:CDS
CTTGAGAATGAAATTGGTAT+AGG 0.374189 5:+14606954 None:intergenic
GTTTCATGTGGTATCTCAAT+TGG 0.376399 5:-14606622 MsG0580025157.01.T01:CDS
TGGTATCTCAATTGGTTCTT+GGG 0.376658 5:-14606614 MsG0580025157.01.T01:CDS
GTGAGCATTCCTCCGTTTGC+AGG 0.378603 5:+14606980 None:intergenic
TTGGGTTACCTCTGTGGCAC+AGG 0.384342 5:-14608827 MsG0580025157.01.T01:CDS
CTATTGGGCTTATGGTCAAT+TGG 0.390406 5:-14607191 MsG0580025157.01.T01:intron
TCCTCATAGGACTTCCTAAA+GGG 0.402441 5:+14610449 None:intergenic
CCATTCCTAGACTCAGTGAT+TGG 0.405615 5:+14610382 None:intergenic
AGGGTATTGTACTTCCATTT+GGG 0.406269 5:-14608845 MsG0580025157.01.T01:CDS
AGCTTAGCTGGTTTGATTGG+AGG 0.408842 5:-14606716 MsG0580025157.01.T01:CDS
GCTTGACAATAGCATTCATA+TGG 0.418079 5:-14609475 MsG0580025157.01.T01:CDS
GACGTATCAAAATTTGTACT+TGG 0.424904 5:-14606932 MsG0580025157.01.T01:CDS
TGCCACATACCTGAATTTCA+AGG 0.428081 5:+14608686 None:intergenic
TACCATTCAACAGTGGTCAT+AGG 0.436794 5:+14608961 None:intergenic
TTTAGTGTGCTTAATGCCCT+AGG 0.437353 5:-14608745 MsG0580025157.01.T01:CDS
TTGAGAATGAAATTGGTATA+GGG 0.437427 5:+14606955 None:intergenic
AAGTAGCGAAGCAGAGTTGA+AGG 0.442652 5:+14609381 None:intergenic
TGGCACAGGGTGCCCTACCA+GGG 0.449780 5:-14608813 MsG0580025157.01.T01:CDS
TATATTGCAGGTGAGAAACT+TGG 0.459968 5:-14609111 MsG0580025157.01.T01:intron
GATGAGATTGTGACCTCTAA+AGG 0.460182 5:+14608708 None:intergenic
CCAAGAATAGTGAATGCAAC+AGG 0.463576 5:+14610295 None:intergenic
TAGAACAGGAAATTCATTGA+TGG 0.466356 5:-14610647 MsG0580025157.01.T01:CDS
TTGTTTCCCTTGGCTATTGG+TGG 0.468351 5:-14607214 MsG0580025157.01.T01:CDS
TTGCATTCACTATTCTTGGT+TGG 0.475098 5:-14610291 MsG0580025157.01.T01:intron
CCATTCTCTGATTGAAGAAG+TGG 0.475490 5:+14610550 None:intergenic
AATCAGTATACACCACTAGA+TGG 0.476523 5:-14606832 MsG0580025157.01.T01:CDS
GATGGATGCTTCTCACTTGA+AGG 0.481982 5:+14607292 None:intergenic
CCCCTTTAGGAAGTCCTATG+AGG 0.483965 5:-14610450 MsG0580025157.01.T01:CDS
AGCTTGATCCTCAAGATGCT+TGG 0.484328 5:-14610408 MsG0580025157.01.T01:CDS
TGTACTACATTGATCATCAT+AGG 0.488056 5:-14609042 MsG0580025157.01.T01:CDS
AACCTATGACCACTGTTGAA+TGG 0.491555 5:-14608963 MsG0580025157.01.T01:CDS
TAGTACATGTTCCTGCTGAT+AGG 0.493828 5:+14609058 None:intergenic
GTGAAACATGGGTGAAGCTA+AGG 0.494937 5:-14610695 None:intergenic
TGGGTGAAGCTAAGGAAATA+TGG 0.498700 5:-14610687 MsG0580025157.01.T01:CDS
GGAGTCTTACTCTTAGGATG+TGG 0.499353 5:+14610520 None:intergenic
CCAATATTGTACCTATCAGC+AGG 0.502225 5:-14609069 MsG0580025157.01.T01:CDS
GATTGATGGTTGCAGGACTT+GGG 0.505239 5:-14609507 MsG0580025157.01.T01:intron
TCTCGACGGATTCGTGAAGA+TGG 0.507939 5:+14609426 None:intergenic
CATGGGTATGCCAATGTCAC+TGG 0.515178 5:+14606683 None:intergenic
CCACTTCTTCAATCAGAGAA+TGG 0.516595 5:-14610550 MsG0580025157.01.T01:CDS
TGCCACAGAGGTAACCCAAA+TGG 0.518690 5:+14608831 None:intergenic
ATTGGAGCAGTCACTGCTGT+AGG 0.519447 5:-14608865 MsG0580025157.01.T01:CDS
GCACCAATAACACCTAGAAC+AGG 0.519686 5:-14610661 MsG0580025157.01.T01:CDS
TTCCTCATAGGACTTCCTAA+AGG 0.522427 5:+14610448 None:intergenic
TTCCATTTGGGTTACCTCTG+TGG 0.527606 5:-14608833 MsG0580025157.01.T01:CDS
TTCATTGATGGGAACACCTA+GGG 0.528215 5:-14610635 MsG0580025157.01.T01:CDS
AGGCAAAAGCAATGATACCT+AGG 0.528585 5:+14608728 None:intergenic
TTCCACATGGGCACATGTGA+TGG 0.528926 5:+14607274 None:intergenic
GACCACTGTTGAATGGTACT+TGG 0.529878 5:-14608956 MsG0580025157.01.T01:CDS
TCTTTGGTTGAGACTACTGA+GGG 0.532040 5:+14606504 None:intergenic
GGCAAAAGCAATGATACCTA+GGG 0.534544 5:+14608729 None:intergenic
ACGTATCAAAATTTGTACTT+GGG 0.536834 5:-14606931 MsG0580025157.01.T01:CDS
AAGATGGACGAGCAACCATA+AGG 0.540400 5:+14609442 None:intergenic
TGGGTTACCTCTGTGGCACA+GGG 0.546277 5:-14608826 MsG0580025157.01.T01:CDS
CCTAAAGGGGTAATAAACCT+TGG 0.550626 5:+14610463 None:intergenic
ATTTCAAATATATGGCATGC+CGG 0.551127 5:-14606870 MsG0580025157.01.T01:CDS
AATAGCCAAGGGAAACAAGC+AGG 0.551229 5:+14607219 None:intergenic
ACTCGGAGCCACCACGGGCA+CGG 0.555802 5:+14606803 None:intergenic
GGTCTTTACATGTGCAGCTG+TGG 0.556391 5:-14608935 MsG0580025157.01.T01:CDS
GATTATAGTTCACCCCTGGT+AGG 0.556885 5:+14608800 None:intergenic
ACTTTGAGCCACATAAAACA+TGG 0.558634 5:+14606665 None:intergenic
AGCCTTCACTCCTTTCCACA+TGG 0.561327 5:+14607261 None:intergenic
GGCACAGGGTGCCCTACCAG+GGG 0.562157 5:-14608812 MsG0580025157.01.T01:CDS
GATTCCATGTCATCGAAAGC+CGG 0.562894 5:+14606851 None:intergenic
TTGGAGCAGTCACTGCTGTA+GGG 0.564723 5:-14608864 MsG0580025157.01.T01:CDS
ACATTCTATCAAGTTGTATG+TGG 0.565376 5:-14609003 MsG0580025157.01.T01:CDS
AATATACAGATTCCTGCAAA+CGG 0.573044 5:-14606992 MsG0580025157.01.T01:intron
CCAATAGCCACCAATAGCCA+AGG 0.573836 5:+14607207 None:intergenic
TCATAGGTTTGGGATTGCAA+TGG 0.574734 5:+14608977 None:intergenic
GCCTTCACTCCTTTCCACAT+GGG 0.574966 5:+14607262 None:intergenic
CTTCACGAATCCGTCGAGAA+CGG 0.576124 5:-14609422 MsG0580025157.01.T01:CDS
CTCTTTGGTTGAGACTACTG+AGG 0.577057 5:+14606503 None:intergenic
CCAATCACTGAGTCTAGGAA+TGG 0.577384 5:-14610382 MsG0580025157.01.T01:CDS
AATAGCATTACCAGTGACAT+TGG 0.578821 5:-14606693 MsG0580025157.01.T01:CDS
AAATTACTCGGAGCCACCAC+GGG 0.579191 5:+14606798 None:intergenic
TCACATGTGCCCATGTGGAA+AGG 0.580233 5:-14607271 MsG0580025157.01.T01:CDS
AGAACAGGAAATTCATTGAT+GGG 0.580903 5:-14610646 MsG0580025157.01.T01:CDS
ATTATAGTTCACCCCTGGTA+GGG 0.580918 5:+14608801 None:intergenic
CATGCCGGCTTTCGATGACA+TGG 0.581612 5:-14606855 MsG0580025157.01.T01:CDS
GCACGGCTTCTTCCATCTAG+TGG 0.584975 5:+14606820 None:intergenic
AGCAGTGACTGCTCCAATGA+GGG 0.588341 5:+14608870 None:intergenic
ATATTGCAGGTGAGAAACTT+GGG 0.590222 5:-14609110 MsG0580025157.01.T01:intron
GGCTTCCAATCACTGAGTCT+AGG 0.591164 5:-14610387 MsG0580025157.01.T01:CDS
CTTTGAGCCACATAAAACAT+GGG 0.601511 5:+14606666 None:intergenic
TCCTGTGACTGGTGAAAACA+AGG 0.602215 5:-14608779 MsG0580025157.01.T01:CDS
CAAGAATGTCTTTGACACCA+AGG 0.603284 5:-14610480 MsG0580025157.01.T01:CDS
ATTGGAAGCCAAGCATCTTG+AGG 0.606372 5:+14610400 None:intergenic
ATTCATTGATGGGAACACCT+AGG 0.607561 5:-14610636 MsG0580025157.01.T01:CDS
GGAAGAAGCCGTGCCCGTGG+TGG 0.610289 5:-14606811 MsG0580025157.01.T01:CDS
ATTGATGGTTGCAGGACTTG+GGG 0.611671 5:-14609506 MsG0580025157.01.T01:intron
TGCAAACGGAGGAATGCTCA+CGG 0.613771 5:-14606978 MsG0580025157.01.T01:CDS
CCTCATAGGACTTCCTAAAG+GGG 0.616548 5:+14610450 None:intergenic
CAGCAGTGACTGCTCCAATG+AGG 0.618461 5:+14608869 None:intergenic
GTGAACTATAATCCTGTGAC+TGG 0.620392 5:-14608790 MsG0580025157.01.T01:CDS
ACAGGATTATAGTTCACCCC+TGG 0.621356 5:+14608796 None:intergenic
AGTGGTGATCTTGTTAGAGA+TGG 0.625203 5:+14610568 None:intergenic
GATGGAAGAAGCCGTGCCCG+TGG 0.625797 5:-14606814 MsG0580025157.01.T01:CDS
GATGGTGAATGAAGCTGTGA+AGG 0.634568 5:+14610586 None:intergenic
GGTGAATGAAGCTGTGAAGG+TGG 0.637979 5:+14610589 None:intergenic
CAAAGAAGTATAGTTTCATG+TGG 0.641405 5:-14606634 MsG0580025157.01.T01:CDS
ATCCATCACATGTGCCCATG+TGG 0.641435 5:-14607276 MsG0580025157.01.T01:CDS
GCCCATGTGGAAAGGAGTGA+AGG 0.644221 5:-14607263 MsG0580025157.01.T01:CDS
CAATAGCCACCAATAGCCAA+GGG 0.648088 5:+14607208 None:intergenic
ACTACATTGATCATCATAGG+AGG 0.659374 5:-14609039 MsG0580025157.01.T01:CDS
ACTGGTGGTGATGCAACCCT+AGG 0.666312 5:+14610619 None:intergenic
GTAGCGAATACCGTTCTCGA+CGG 0.668132 5:+14609412 None:intergenic
TGTGAAGGTGGACATGACAC+TGG 0.669637 5:+14610601 None:intergenic
TAGGGCACCCTGTGCCACAG+AGG 0.679912 5:+14608819 None:intergenic
AAAATTACTCGGAGCCACCA+CGG 0.681179 5:+14606797 None:intergenic
ATACAGATTCCTGCAAACGG+AGG 0.682038 5:-14606989 MsG0580025157.01.T01:intron
GACCAAGTACCATTCAACAG+TGG 0.725784 5:+14608954 None:intergenic
GAAGGTGGACATGACACTGG+TGG 0.770151 5:+14610604 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATTCAAATTAAAGAAATA+TGG + Chr5:14610132-14610151 None:intergenic 10.0%
!! ATAAAAAATAAGATGAAAAA+AGG + Chr5:14606973-14606992 None:intergenic 10.0%
!! ATGATATTTAACAAAAAATA+TGG + Chr5:14609290-14609309 None:intergenic 10.0%
!! TAAAAATTTAATTAGGTAAT+AGG + Chr5:14608557-14608576 None:intergenic 10.0%
!! TACAAGATTAAATAAAAAAT+TGG + Chr5:14607078-14607097 None:intergenic 10.0%
!! TCATAATATATTTAAATAGT+TGG + Chr5:14610087-14610106 None:intergenic 10.0%
!!! ATATTTTTTGTTAAATATCA+TGG - Chr5:14609289-14609308 MsG0580025157.01.T01:intron 10.0%
!!! ATTTTTTATTTAATCTTGTA+TGG - Chr5:14607078-14607097 MsG0580025157.01.T01:intron 10.0%
!!! CTTATTTTTTATGTTTTAAT+AGG - Chr5:14606981-14607000 MsG0580025157.01.T01:CDS 10.0%
!!! TAATCAAATATCTAAAATTT+AGG + Chr5:14609800-14609819 None:intergenic 10.0%
!!! TTTTTGTTGATATATTTATT+GGG - Chr5:14608614-14608633 MsG0580025157.01.T01:intron 10.0%
!!! TTTTTTGTTGATATATTTAT+TGG - Chr5:14608613-14608632 MsG0580025157.01.T01:intron 10.0%
!!! TTTTTTTGTTGAAAATATTA+TGG - Chr5:14609173-14609192 MsG0580025157.01.T01:intron 10.0%
!!! TTTTTTTTTTGAAAATATCA+TGG + Chr5:14609533-14609552 None:intergenic 10.0%
!!! TTTTTTTTTTTCAATTTGAA+AGG + Chr5:14607111-14607130 None:intergenic 10.0%
!! AAAAAATTATATGTGTTCTT+CGG - Chr5:14609547-14609566 MsG0580025157.01.T01:intron 15.0%
!! AAAAATGCAATATATCATTT+AGG + Chr5:14609209-14609228 None:intergenic 15.0%
!! AAAGAAAAAAAAAAAAACCT+CGG + Chr5:14609583-14609602 None:intergenic 15.0%
!! AAAGGGTAAATATATAAAAT+TGG + Chr5:14607479-14607498 None:intergenic 15.0%
!! AAGGGTAAATATATAAAATT+GGG + Chr5:14607478-14607497 None:intergenic 15.0%
!! ATATATGTTATTATTGATAC+TGG - Chr5:14610657-14610676 MsG0580025157.01.T01:CDS 15.0%
!! ATTAAATAAAAAATTGGAGT+TGG + Chr5:14607072-14607091 None:intergenic 15.0%
!! TTAATAGATAGATAATAAGT+TGG - Chr5:14607451-14607470 MsG0580025157.01.T01:intron 15.0%
!!! ATTTTTGTGAAATGAAATAT+AGG - Chr5:14607319-14607338 MsG0580025157.01.T01:intron 15.0%
!!! CAACAATTTTCATAAATTTA+TGG - Chr5:14609720-14609739 MsG0580025157.01.T01:intron 15.0%
!!! TTTTCTAAATTTATGTAAGT+TGG + Chr5:14608995-14609014 None:intergenic 15.0%
!!! TTTTTGTGAAATGAAATATA+GGG - Chr5:14607320-14607339 MsG0580025157.01.T01:intron 15.0%
!!! TTTTTTTTTTCTTTTTTCGT+CGG - Chr5:14609589-14609608 MsG0580025157.01.T01:intron 15.0%
!! AACAAAAAAAATGTGTTCTT+CGG + Chr5:14609163-14609182 None:intergenic 20.0%
!! AACAATAAAACCAGTATATA+TGG + Chr5:14609453-14609472 None:intergenic 20.0%
!! AAGGAAAGAAAAAAAAATCT+CGG - Chr5:14609127-14609146 MsG0580025157.01.T01:intron 20.0%
!! AAGTCATAAATTATGTTACT+TGG - Chr5:14607171-14607190 MsG0580025157.01.T01:intron 20.0%
!! AATATATCATTTAGGTAACA+TGG + Chr5:14609201-14609220 None:intergenic 20.0%
!! AATGATATATTGCATATTGA+TGG - Chr5:14609242-14609261 MsG0580025157.01.T01:intron 20.0%
!! ATAATAGGAGGAAAAAAAAT+AGG - Chr5:14608890-14608909 MsG0580025157.01.T01:CDS 20.0%
!! GCAAAAAAAAAACTTCAAAT+TGG + Chr5:14608675-14608694 None:intergenic 20.0%
!! TTGTGTTCATTTCAAATATA+TGG - Chr5:14610327-14610346 MsG0580025157.01.T01:CDS 20.0%
!!! ATATATTATGACTTGTCTTA+TGG - Chr5:14610096-14610115 MsG0580025157.01.T01:intron 20.0%
!!! GTTTAAGATGTTAATCTTAA+TGG - Chr5:14608008-14608027 MsG0580025157.01.T01:intron 20.0%
!!! TCTATGTATTTTCATAAGTT+TGG + Chr5:14607580-14607599 None:intergenic 20.0%
!!! TGTTAACTAAAGTTTGTTAT+AGG + Chr5:14607667-14607686 None:intergenic 20.0%
!!! TTTTATTTTTGTTCTTGAGA+AGG - Chr5:14607262-14607281 MsG0580025157.01.T01:CDS 20.0%
! AAGATGAAAAAAGGATTGAA+TGG + Chr5:14606964-14606983 None:intergenic 25.0%
! ACAATCAAATTTGTGATTGA+TGG - Chr5:14607684-14607703 MsG0580025157.01.T01:intron 25.0%
! ACATCATTATCTTACATCTT+TGG + Chr5:14608035-14608054 None:intergenic 25.0%
! ACGTATCAAAATTTGTACTT+GGG - Chr5:14610274-14610293 MsG0580025157.01.T01:intron 25.0%
! AGCGTAGTGATAAAATTAAA+AGG + Chr5:14607497-14607516 None:intergenic 25.0%
! ATTACTTCAAAAGTCAAAAG+AGG + Chr5:14608703-14608722 None:intergenic 25.0%
! ATTCCAATACTTCATCAATT+GGG + Chr5:14608072-14608091 None:intergenic 25.0%
! CAAAAAATATGGTTCTCATA+TGG + Chr5:14609279-14609298 None:intergenic 25.0%
! CTATCTATTAAATAACTCCA+AGG + Chr5:14607442-14607461 None:intergenic 25.0%
! GCGTAGTGATAAAATTAAAA+GGG + Chr5:14607496-14607515 None:intergenic 25.0%
! TTGAGAATGAAATTGGTATA+GGG + Chr5:14610253-14610272 None:intergenic 25.0%
!! ATCTGTATATTTCAAGTCAA+TGG + Chr5:14610204-14610223 None:intergenic 25.0%
!! GATTGTACTACAAATGTTTT+TGG + Chr5:14609749-14609768 None:intergenic 25.0%
!! TGATTTTCTAATTTTGTTGC+AGG - Chr5:14609882-14609901 MsG0580025157.01.T01:intron 25.0%
!!! CTAGTATTATTCTACTTTTC+CGG - Chr5:14609408-14609427 MsG0580025157.01.T01:CDS 25.0%
!!! TGAAAATATTTTGGTTTCAG+TGG - Chr5:14609315-14609334 MsG0580025157.01.T01:intron 25.0%
!!! TTTTTCTTTCCTTTTTTCGT+CGG + Chr5:14609120-14609139 None:intergenic 25.0%
AAAACTTCAATAGATGTGCT+GGG - Chr5:14608792-14608811 MsG0580025157.01.T01:CDS 30.0%
AAGATATGCCATAGTTTAGT+AGG - Chr5:14607411-14607430 MsG0580025157.01.T01:intron 30.0%
AATATACAGATTCCTGCAAA+CGG - Chr5:14610213-14610232 MsG0580025157.01.T01:intron 30.0%
ACCAGTATATATGGTGTATT+TGG + Chr5:14609444-14609463 None:intergenic 30.0%
AGAACAGGAAATTCATTGAT+GGG - Chr5:14606559-14606578 MsG0580025157.01.T01:CDS 30.0%
AGAAGACTCGAAAAATTACT+CGG + Chr5:14610422-14610441 None:intergenic 30.0%
AGGTACAACAAAGTTAATCA+GGG + Chr5:14607647-14607666 None:intergenic 30.0%
ATACGTCTTGAGAATGAAAT+TGG + Chr5:14610260-14610279 None:intergenic 30.0%
ATCAATGAATTTCCTGTTCT+AGG + Chr5:14606559-14606578 None:intergenic 30.0%
ATGAGGCAAGTAAAATAAAG+TGG + Chr5:14607868-14607887 None:intergenic 30.0%
ATTTACTACTACGAAAAAGC+TGG + Chr5:14610304-14610323 None:intergenic 30.0%
ATTTCAAATATATGGCATGC+CGG - Chr5:14610335-14610354 MsG0580025157.01.T01:CDS 30.0%
CACATGAAACTATACTTCTT+TGG + Chr5:14610573-14610592 None:intergenic 30.0%
CACCATGTTAAGTTCATAAT+AGG - Chr5:14608875-14608894 MsG0580025157.01.T01:CDS 30.0%
CATGTTAAGTTCATAATAGG+AGG - Chr5:14608878-14608897 MsG0580025157.01.T01:CDS 30.0%
CATTCCAATACTTCATCAAT+TGG + Chr5:14608073-14608092 None:intergenic 30.0%
CCAGTATATATGGTGTATTT+GGG + Chr5:14609443-14609462 None:intergenic 30.0%
CTATTATGAACTTAACATGG+TGG + Chr5:14608877-14608896 None:intergenic 30.0%
CTCCTATTATGAACTTAACA+TGG + Chr5:14608880-14608899 None:intergenic 30.0%
CTTGAGAATGAAATTGGTAT+AGG + Chr5:14610254-14610273 None:intergenic 30.0%
GAAATGAAATATAGGGTAAG+TGG - Chr5:14607327-14607346 MsG0580025157.01.T01:intron 30.0%
GACGTATCAAAATTTGTACT+TGG - Chr5:14610273-14610292 MsG0580025157.01.T01:intron 30.0%
TAACTACCGAAGTTTATAAC+CGG - Chr5:14609081-14609100 MsG0580025157.01.T01:CDS 30.0%
TAGAACAGGAAATTCATTGA+TGG - Chr5:14606558-14606577 MsG0580025157.01.T01:CDS 30.0%
TAGGTACAACAAAGTTAATC+AGG + Chr5:14607648-14607667 None:intergenic 30.0%
TGTACTACATTGATCATCAT+AGG - Chr5:14608163-14608182 MsG0580025157.01.T01:intron 30.0%
TGTTGTTGACACATATGATA+GGG + Chr5:14609705-14609724 None:intergenic 30.0%
! AAAAGACGAAAATGTTTCTG+CGG + Chr5:14609667-14609686 None:intergenic 30.0%
! AATGGTTTGTGATTAGTTGA+CGG + Chr5:14610186-14610205 None:intergenic 30.0%
! ACATTCTATCAAGTTGTATG+TGG - Chr5:14608202-14608221 MsG0580025157.01.T01:intron 30.0%
! CAAAGAAGTATAGTTTCATG+TGG - Chr5:14610571-14610590 MsG0580025157.01.T01:CDS 30.0%
! CTTTTCATACTCTTTGTTCT+GGG - Chr5:14606863-14606882 MsG0580025157.01.T01:CDS 30.0%
! TTGTTGTTGACACATATGAT+AGG + Chr5:14609706-14609725 None:intergenic 30.0%
!! CAATTGATGAAGTATTGGAA+TGG - Chr5:14608071-14608090 MsG0580025157.01.T01:intron 30.0%
!! TCATGGCACTGAAAATATTT+TGG - Chr5:14609306-14609325 MsG0580025157.01.T01:intron 30.0%
!!! AGCTTTTTCGTAGTAGTAAA+TGG - Chr5:14610303-14610322 MsG0580025157.01.T01:CDS 30.0%
!!! GTAATTTTTCGAGTCTTCTT+CGG - Chr5:14610423-14610442 MsG0580025157.01.T01:CDS 30.0%
!!! TAATTTTTCGAGTCTTCTTC+GGG - Chr5:14610424-14610443 MsG0580025157.01.T01:CDS 30.0%
AAAAGACGAAAATGTCCATG+CGG - Chr5:14609054-14609073 MsG0580025157.01.T01:CDS 35.0%
AATAGCATTACCAGTGACAT+TGG - Chr5:14610512-14610531 MsG0580025157.01.T01:CDS 35.0%
AATCAGTATACACCACTAGA+TGG - Chr5:14610373-14610392 MsG0580025157.01.T01:CDS 35.0%
ACTACATTGATCATCATAGG+AGG - Chr5:14608166-14608185 MsG0580025157.01.T01:intron 35.0%
ACTTTGAGCCACATAAAACA+TGG + Chr5:14610543-14610562 None:intergenic 35.0%
ATATTGCAGGTGAGAAACTT+GGG - Chr5:14608095-14608114 MsG0580025157.01.T01:intron 35.0%
ATCCTTGAAATTCAGGTATG+TGG - Chr5:14608517-14608536 MsG0580025157.01.T01:intron 35.0%
CAATCTCATCCTTGAAATTC+AGG - Chr5:14608510-14608529 MsG0580025157.01.T01:intron 35.0%
CCAAACTTGAATTCAATTGC+TGG - Chr5:14608307-14608326 MsG0580025157.01.T01:intron 35.0%
CCCAAATACACCATATATAC+TGG - Chr5:14609440-14609459 MsG0580025157.01.T01:CDS 35.0%
CTTCGGTAGTTTCTAAACTT+CGG - Chr5:14609631-14609650 MsG0580025157.01.T01:intron 35.0%
CTTTGAGCCACATAAAACAT+GGG + Chr5:14610542-14610561 None:intergenic 35.0%
GAAAACTTCAATAGATGTGC+TGG - Chr5:14608791-14608810 MsG0580025157.01.T01:CDS 35.0%
GCGATGTAACATTATCTATG+AGG + Chr5:14607885-14607904 None:intergenic 35.0%
GCTTGACAATAGCATTCATA+TGG - Chr5:14607730-14607749 MsG0580025157.01.T01:intron 35.0%
GGTACAACAAAGTTAATCAG+GGG + Chr5:14607646-14607665 None:intergenic 35.0%
GTATTGGAATGGTATATTGC+AGG - Chr5:14608082-14608101 MsG0580025157.01.T01:intron 35.0%
GTTTCATGTGGTATCTCAAT+TGG - Chr5:14610583-14610602 MsG0580025157.01.T01:CDS 35.0%
TAAATGCACAGCATGCAATA+TGG + Chr5:14609353-14609372 None:intergenic 35.0%
TATATTGCAGGTGAGAAACT+TGG - Chr5:14608094-14608113 MsG0580025157.01.T01:intron 35.0%
TATGGCAACTTTACACCTTA+TGG - Chr5:14607748-14607767 MsG0580025157.01.T01:intron 35.0%
TATTGGGTACTTGTCATAAG+TGG - Chr5:14608630-14608649 MsG0580025157.01.T01:intron 35.0%
TGTATTTGGGTCTATTAGAC+CGG + Chr5:14609430-14609449 None:intergenic 35.0%
TTGCATTCACTATTCTTGGT+TGG - Chr5:14606914-14606933 MsG0580025157.01.T01:CDS 35.0%
TTGCCCAATTGATGAAGTAT+TGG - Chr5:14608066-14608085 MsG0580025157.01.T01:intron 35.0%
TTGTTCTTGAGAAGGAGATT+AGG - Chr5:14607270-14607289 MsG0580025157.01.T01:CDS 35.0%
! AATTGGTTCTTGGGAACATT+TGG - Chr5:14610600-14610619 MsG0580025157.01.T01:CDS 35.0%
! AATTTGTGATTGATGGTTGC+AGG - Chr5:14607691-14607710 MsG0580025157.01.T01:intron 35.0%
! CCAGCAATTGAATTCAAGTT+TGG + Chr5:14608310-14608329 None:intergenic 35.0%
! GCTTTTCATACTCTTTGTTC+TGG - Chr5:14606862-14606881 MsG0580025157.01.T01:CDS 35.0%
! TCAAGTTTGGTAACTGAGAT+AGG + Chr5:14608297-14608316 None:intergenic 35.0%
! TGGTATCTCAATTGGTTCTT+GGG - Chr5:14610591-14610610 MsG0580025157.01.T01:CDS 35.0%
! TTTCCTGTTCTAGGTGTTAT+TGG + Chr5:14606550-14606569 None:intergenic 35.0%
!! AAAGACATTCTTGGTGTTCT+AGG + Chr5:14606718-14606737 None:intergenic 35.0%
!! AGGGTATTGTACTTCCATTT+GGG - Chr5:14608360-14608379 MsG0580025157.01.T01:intron 35.0%
!! ATCATTGCTTTTGCCTTTAG+AGG - Chr5:14608484-14608503 MsG0580025157.01.T01:intron 35.0%
!! TAGGGTATTGTACTTCCATT+TGG - Chr5:14608359-14608378 MsG0580025157.01.T01:intron 35.0%
AACCTATGACCACTGTTGAA+TGG - Chr5:14608242-14608261 MsG0580025157.01.T01:intron 40.0%
ACAACCATGATAGGTGTTCA+TGG - Chr5:14609505-14609524 MsG0580025157.01.T01:intron 40.0%
AGAAACTACCGAAGTTCCTT+CGG + Chr5:14609625-14609644 None:intergenic 40.0%
AGAAGCCATACAACCATGAT+AGG - Chr5:14609496-14609515 MsG0580025157.01.T01:intron 40.0%
AGGAGTTGCCTACTAAACTA+TGG + Chr5:14607422-14607441 None:intergenic 40.0%
AGGCAAAAGCAATGATACCT+AGG + Chr5:14608480-14608499 None:intergenic 40.0%
AGTCGTCCAATAACTCCAAA+TGG + Chr5:14608827-14608846 None:intergenic 40.0%
AGTCTCAAAGCTTTCCTCAT+AGG + Chr5:14606772-14606791 None:intergenic 40.0%
AGTGGTGATCTTGTTAGAGA+TGG + Chr5:14606640-14606659 None:intergenic 40.0%
AGTTAACTGCCGACGAAAAA+AGG - Chr5:14609108-14609127 MsG0580025157.01.T01:intron 40.0%
ATTATAGTTCACCCCTGGTA+GGG + Chr5:14608407-14608426 None:intergenic 40.0%
ATTCATTGATGGGAACACCT+AGG - Chr5:14606569-14606588 MsG0580025157.01.T01:CDS 40.0%
ATTGCTGGAATTTCCCTCAT+TGG - Chr5:14608322-14608341 MsG0580025157.01.T01:intron 40.0%
CAAGAATGTCTTTGACACCA+AGG - Chr5:14606725-14606744 MsG0580025157.01.T01:CDS 40.0%
CCAAGAATAGTGAATGCAAC+AGG + Chr5:14606913-14606932 None:intergenic 40.0%
CCAAGGTTTATTACCCCTTT+AGG - Chr5:14606742-14606761 MsG0580025157.01.T01:CDS 40.0%
CCAATATTGTACCTATCAGC+AGG - Chr5:14608136-14608155 MsG0580025157.01.T01:intron 40.0%
CCACTTCTTCAATCAGAGAA+TGG - Chr5:14606655-14606674 MsG0580025157.01.T01:CDS 40.0%
CCAGCTAAGCTAGACAAAAA+TGG + Chr5:14610480-14610499 None:intergenic 40.0%
CCATTCTCTGATTGAAGAAG+TGG + Chr5:14606658-14606677 None:intergenic 40.0%
CCTAAAGGGGTAATAAACCT+TGG + Chr5:14606745-14606764 None:intergenic 40.0%
CCTGCTGATAGGTACAATAT+TGG + Chr5:14608139-14608158 None:intergenic 40.0%
CCTGTTGCATTCACTATTCT+TGG - Chr5:14606910-14606929 MsG0580025157.01.T01:CDS 40.0%
CTATTGGGCTTATGGTCAAT+TGG - Chr5:14610014-14610033 MsG0580025157.01.T01:intron 40.0%
GAACACCTATCATGGTTGTA+TGG + Chr5:14609504-14609523 None:intergenic 40.0%
GATGAGATTGTGACCTCTAA+AGG + Chr5:14608500-14608519 None:intergenic 40.0%
GGCAAAAGCAATGATACCTA+GGG + Chr5:14608479-14608498 None:intergenic 40.0%
GTGAACTATAATCCTGTGAC+TGG - Chr5:14608415-14608434 MsG0580025157.01.T01:intron 40.0%
TACCATTCAACAGTGGTCAT+AGG + Chr5:14608247-14608266 None:intergenic 40.0%
TAGTACATGTTCCTGCTGAT+AGG + Chr5:14608150-14608169 None:intergenic 40.0%
TAGTTTAGTAGGCAACTCCT+TGG - Chr5:14607422-14607441 MsG0580025157.01.T01:intron 40.0%
TCAACAGTGGTCATAGGTTT+GGG + Chr5:14608241-14608260 None:intergenic 40.0%
TCCTCATAGGACTTCCTAAA+GGG + Chr5:14606759-14606778 None:intergenic 40.0%
TGATAGGGCTGAAAAACACA+TGG + Chr5:14609050-14609031 None:intergenic 40.0%
TGCCACATACCTGAATTTCA+AGG + Chr5:14608522-14608541 None:intergenic 40.0%
TGCTGTTGACACATGTGATA+GGG - Chr5:14609016-14609035 MsG0580025157.01.T01:CDS 40.0%
TGGGTGAAGCTAAGGAAATA+TGG - Chr5:14606518-14606537 MsG0580025157.01.T01:CDS 40.0%
TTCAACAGTGGTCATAGGTT+TGG + Chr5:14608242-14608261 None:intergenic 40.0%
TTCATTGATGGGAACACCTA+GGG - Chr5:14606570-14606589 MsG0580025157.01.T01:CDS 40.0%
TTCCTCATAGGACTTCCTAA+AGG + Chr5:14606760-14606779 None:intergenic 40.0%
TTTAGTGTGCTTAATGCCCT+AGG - Chr5:14608460-14608479 MsG0580025157.01.T01:intron 40.0%
! AGCACACCATTTGGAGTTAT+TGG - Chr5:14608818-14608837 MsG0580025157.01.T01:CDS 40.0%
! GGGTTTTTGTGCTTCTTCAT+AGG - Chr5:14610444-14610463 MsG0580025157.01.T01:CDS 40.0%
! GTGGTATCTCAATTGGTTCT+TGG - Chr5:14610590-14610609 MsG0580025157.01.T01:CDS 40.0%
! TCATAGGTTTGGGATTGCAA+TGG + Chr5:14608231-14608250 None:intergenic 40.0%
! TGGCATACCCATGTTTTATG+TGG - Chr5:14610532-14610551 MsG0580025157.01.T01:CDS 40.0%
! TTGCTGTTGACACATGTGAT+AGG - Chr5:14609015-14609034 MsG0580025157.01.T01:CDS 40.0%
!! CATACTCTTTGTTCTGGGAT+TGG - Chr5:14606868-14606887 MsG0580025157.01.T01:CDS 40.0%
!! CCATTTTTGTCTAGCTTAGC+TGG - Chr5:14610477-14610496 MsG0580025157.01.T01:CDS 40.0%
!! CTTGGTGTCAAAGACATTCT+TGG + Chr5:14606727-14606746 None:intergenic 40.0%
!! GTCTTTGGAGTCTTACTCTT+AGG + Chr5:14606694-14606713 None:intergenic 40.0%
!! TAGTGGAGGCTTTAGACAAT+GGG - Chr5:14607357-14607376 MsG0580025157.01.T01:intron 40.0%
!! TCTAGCTTAGCTGGTTTGAT+TGG - Chr5:14610486-14610505 MsG0580025157.01.T01:CDS 40.0%
!! TGCATATTGATGGCACTGAT+AGG - Chr5:14609252-14609271 MsG0580025157.01.T01:intron 40.0%
AAAATTACTCGGAGCCACCA+CGG + Chr5:14610411-14610430 None:intergenic 45.0%
AAGATGGACGAGCAACCATA+AGG + Chr5:14607766-14607785 None:intergenic 45.0%
AAGTAGCGAAGCAGAGTTGA+AGG + Chr5:14607827-14607846 None:intergenic 45.0%
AATAGCCAAGGGAAACAAGC+AGG + Chr5:14609989-14610008 None:intergenic 45.0%
ACAGGATTATAGTTCACCCC+TGG + Chr5:14608412-14608431 None:intergenic 45.0%
AGCTTGATCCTCAAGATGCT+TGG - Chr5:14606797-14606816 MsG0580025157.01.T01:CDS 45.0%
ATACAGATTCCTGCAAACGG+AGG - Chr5:14610216-14610235 MsG0580025157.01.T01:intron 45.0%
ATTGGAAGCCAAGCATCTTG+AGG + Chr5:14606808-14606827 None:intergenic 45.0%
CAATAGCCACCAATAGCCAA+GGG + Chr5:14610000-14610019 None:intergenic 45.0%
CCAATCACTGAGTCTAGGAA+TGG - Chr5:14606823-14606842 MsG0580025157.01.T01:CDS 45.0%
CCATTCCTAGACTCAGTGAT+TGG + Chr5:14606826-14606845 None:intergenic 45.0%
CCTCATAGGACTTCCTAAAG+GGG + Chr5:14606758-14606777 None:intergenic 45.0%
CTGCAGCCGGTTATAAACTT+CGG + Chr5:14609090-14609109 None:intergenic 45.0%
GACCAAGTACCATTCAACAG+TGG + Chr5:14608254-14608273 None:intergenic 45.0%
GACCACTGTTGAATGGTACT+TGG - Chr5:14608249-14608268 MsG0580025157.01.T01:intron 45.0%
GATGGATGCTTCTCACTTGA+AGG + Chr5:14609916-14609935 None:intergenic 45.0%
GATGGTGAATGAAGCTGTGA+AGG + Chr5:14606622-14606641 None:intergenic 45.0%
GATTATAGTTCACCCCTGGT+AGG + Chr5:14608408-14608427 None:intergenic 45.0%
GATTCCATGTCATCGAAAGC+CGG + Chr5:14610357-14610376 None:intergenic 45.0%
GCACCAATAACACCTAGAAC+AGG - Chr5:14606544-14606563 MsG0580025157.01.T01:CDS 45.0%
GGAGTCTTACTCTTAGGATG+TGG + Chr5:14606688-14606707 None:intergenic 45.0%
GGTTCCATGAACACCTATCA+TGG + Chr5:14609512-14609531 None:intergenic 45.0%
GTTAACTGCCGAAGGAACTT+CGG - Chr5:14609614-14609633 MsG0580025157.01.T01:intron 45.0%
TAAGTGGATGAGACTAGTGG+AGG - Chr5:14607343-14607362 MsG0580025157.01.T01:intron 45.0%
TCCTGTGACTGGTGAAAACA+AGG - Chr5:14608426-14608445 MsG0580025157.01.T01:intron 45.0%
TGCTTGTTTCCCTTGGCTAT+TGG - Chr5:14609988-14610007 MsG0580025157.01.T01:intron 45.0%
TTGTTTCCCTTGGCTATTGG+TGG - Chr5:14609991-14610010 MsG0580025157.01.T01:intron 45.0%
! ATTGATGGTTGCAGGACTTG+GGG - Chr5:14607699-14607718 MsG0580025157.01.T01:intron 45.0%
! ATTGGTGGCTATTGGGCTTA+TGG - Chr5:14610006-14610025 MsG0580025157.01.T01:intron 45.0%
! CAACTCTGCTTCGCTACTTT+CGG - Chr5:14607828-14607847 MsG0580025157.01.T01:intron 45.0%
! CTTGGCTATTGGTGGCTATT+GGG - Chr5:14609999-14610018 MsG0580025157.01.T01:intron 45.0%
! GATTGATGGTTGCAGGACTT+GGG - Chr5:14607698-14607717 MsG0580025157.01.T01:intron 45.0%
! TGATTGATGGTTGCAGGACT+TGG - Chr5:14607697-14607716 MsG0580025157.01.T01:intron 45.0%
! TTCCATTTGGGTTACCTCTG+TGG - Chr5:14608372-14608391 MsG0580025157.01.T01:intron 45.0%
!! AGCTTAGCTGGTTTGATTGG+AGG - Chr5:14610489-14610508 MsG0580025157.01.T01:CDS 45.0%
!! CTAGTGGAGGCTTTAGACAA+TGG - Chr5:14607356-14607375 MsG0580025157.01.T01:intron 45.0%
!! CTTGGTGTTCTAGGAGTCTT+TGG + Chr5:14606709-14606728 None:intergenic 45.0%
!! GAGGCTTTAGACAATGGGAT+GGG - Chr5:14607362-14607381 MsG0580025157.01.T01:intron 45.0%
!!! ACCTTGTTTTCACCAGTCAC+AGG + Chr5:14608430-14608449 None:intergenic 45.0%
!!! TAATTTCTAAAAATTTAATT+AGG + Chr5:14608564-14608583 None:intergenic 5.0%
AAATTACTCGGAGCCACCAC+GGG + Chr5:14610410-14610429 None:intergenic 50.0%
AGCAGTGACTGCTCCAATGA+GGG + Chr5:14608338-14608357 None:intergenic 50.0%
AGCCTTCACTCCTTTCCACA+TGG + Chr5:14609947-14609966 None:intergenic 50.0%
ATCCATCACATGTGCCCATG+TGG - Chr5:14609929-14609948 MsG0580025157.01.T01:intron 50.0%
ATTGGAGCAGTCACTGCTGT+AGG - Chr5:14608340-14608359 MsG0580025157.01.T01:intron 50.0%
CATGGGTATGCCAATGTCAC+TGG + Chr5:14610525-14610544 None:intergenic 50.0%
CCAATAGCCACCAATAGCCA+AGG + Chr5:14610001-14610020 None:intergenic 50.0%
CTTCACGAATCCGTCGAGAA+CGG - Chr5:14607783-14607802 MsG0580025157.01.T01:intron 50.0%
GCCTTCACTCCTTTCCACAT+GGG + Chr5:14609946-14609965 None:intergenic 50.0%
GGCTTCCAATCACTGAGTCT+AGG - Chr5:14606818-14606837 MsG0580025157.01.T01:CDS 50.0%
GGGTAAGTGGATGAGACTAG+TGG - Chr5:14607340-14607359 MsG0580025157.01.T01:intron 50.0%
GGTCTTTACATGTGCAGCTG+TGG - Chr5:14608270-14608289 MsG0580025157.01.T01:intron 50.0%
GGTGAATGAAGCTGTGAAGG+TGG + Chr5:14606619-14606638 None:intergenic 50.0%
GTAGCGAATACCGTTCTCGA+CGG + Chr5:14607796-14607815 None:intergenic 50.0%
TCACATGTGCCCATGTGGAA+AGG - Chr5:14609934-14609953 MsG0580025157.01.T01:intron 50.0%
TGCAAACGGAGGAATGCTCA+CGG - Chr5:14610227-14610246 MsG0580025157.01.T01:intron 50.0%
TGCCACAGAGGTAACCCAAA+TGG + Chr5:14608377-14608396 None:intergenic 50.0%
TGTGAAGGTGGACATGACAC+TGG + Chr5:14606607-14606626 None:intergenic 50.0%
TTCCACATGGGCACATGTGA+TGG + Chr5:14609934-14609953 None:intergenic 50.0%
TTCGGTAGTTAACTGCCGCA+TGG + Chr5:14609072-14609091 None:intergenic 50.0%
TTGGAGCAGTCACTGCTGTA+GGG - Chr5:14608341-14608360 MsG0580025157.01.T01:intron 50.0%
! CCCCTTTAGGAAGTCCTATG+AGG - Chr5:14606755-14606774 MsG0580025157.01.T01:CDS 50.0%
! CCTTGGCTATTGGTGGCTAT+TGG - Chr5:14609998-14610017 MsG0580025157.01.T01:intron 50.0%
! TCTCGACGGATTCGTGAAGA+TGG + Chr5:14607782-14607801 None:intergenic 50.0%
!! GGAGGCTTTAGACAATGGGA+TGG - Chr5:14607361-14607380 MsG0580025157.01.T01:intron 50.0%
CAGCAGTGACTGCTCCAATG+AGG + Chr5:14608339-14608358 None:intergenic 55.0%
GAAGGTGGACATGACACTGG+TGG + Chr5:14606604-14606623 None:intergenic 55.0%
GCACGGCTTCTTCCATCTAG+TGG + Chr5:14610388-14610407 None:intergenic 55.0%
GCCCATGTGGAAAGGAGTGA+AGG - Chr5:14609942-14609961 MsG0580025157.01.T01:intron 55.0%
GCTGGGTCAAGCACACCATT+TGG - Chr5:14608809-14608828 MsG0580025157.01.T01:CDS 55.0%
GTGAGCATTCCTCCGTTTGC+AGG + Chr5:14610228-14610247 None:intergenic 55.0%
TGCTGCCTGCTTGTTTCCCT+TGG - Chr5:14609981-14610000 MsG0580025157.01.T01:intron 55.0%
TGGGTTACCTCTGTGGCACA+GGG - Chr5:14608379-14608398 MsG0580025157.01.T01:intron 55.0%
TTGGGTTACCTCTGTGGCAC+AGG - Chr5:14608378-14608397 MsG0580025157.01.T01:intron 55.0%
! ACTGGTGGTGATGCAACCCT+AGG + Chr5:14606589-14606608 None:intergenic 55.0%
! TCTTCGGCACTTAAGTGCCG+AGG - Chr5:14609563-14609582 MsG0580025157.01.T01:intron 55.0%
!! CATGCCGGCTTTCGATGACA+TGG - Chr5:14610350-14610369 MsG0580025157.01.T01:CDS 55.0%
CGTCGGCAGTTAACTGCAGC+CGG + Chr5:14609103-14609122 None:intergenic 60.0%
CGTCGGCAGTTAACTGCCGA+AGG - Chr5:14609606-14609625 MsG0580025157.01.T01:intron 60.0%
GATGGAAGAAGCCGTGCCCG+TGG - Chr5:14610391-14610410 MsG0580025157.01.T01:CDS 65.0%
! TAGGGCACCCTGTGCCACAG+AGG + Chr5:14608389-14608408 None:intergenic 65.0%
! TGGCACAGGGTGCCCTACCA+GGG - Chr5:14608392-14608411 MsG0580025157.01.T01:intron 65.0%
ACTCGGAGCCACCACGGGCA+CGG + Chr5:14610405-14610424 None:intergenic 70.0%
GGAAGAAGCCGTGCCCGTGG+TGG - Chr5:14610394-14610413 MsG0580025157.01.T01:CDS 70.0%
! GGCACAGGGTGCCCTACCAG+GGG - Chr5:14608393-14608412 MsG0580025157.01.T01:intron 70.0%
! GTGGCACAGGGTGCCCTACC+AGG - Chr5:14608391-14608410 MsG0580025157.01.T01:intron 70.0%
Chromosome Type Strat End Strand Name
Chr5 gene 14606517 14610710 14606517 ID=MsG0580025157.01;Name=MsG0580025157.01
Chr5 mRNA 14606517 14610710 14606517 ID=MsG0580025157.01.T01;Parent=MsG0580025157.01;Name=MsG0580025157.01.T01;_AED=0.33;_eAED=0.33;_QI=0|0|0|1|1|1|5|0|534
Chr5 exon 14610292 14610710 14610292 ID=MsG0580025157.01.T01:exon:20689;Parent=MsG0580025157.01.T01
Chr5 exon 14609378 14609514 14609378 ID=MsG0580025157.01.T01:exon:20688;Parent=MsG0580025157.01.T01
Chr5 exon 14608696 14609123 14608696 ID=MsG0580025157.01.T01:exon:20687;Parent=MsG0580025157.01.T01
Chr5 exon 14607192 14607323 14607192 ID=MsG0580025157.01.T01:exon:20686;Parent=MsG0580025157.01.T01
Chr5 exon 14606517 14607005 14606517 ID=MsG0580025157.01.T01:exon:20685;Parent=MsG0580025157.01.T01
Chr5 CDS 14610292 14610710 14610292 ID=MsG0580025157.01.T01:cds;Parent=MsG0580025157.01.T01
Chr5 CDS 14609378 14609514 14609378 ID=MsG0580025157.01.T01:cds;Parent=MsG0580025157.01.T01
Chr5 CDS 14608696 14609123 14608696 ID=MsG0580025157.01.T01:cds;Parent=MsG0580025157.01.T01
Chr5 CDS 14607192 14607323 14607192 ID=MsG0580025157.01.T01:cds;Parent=MsG0580025157.01.T01
Chr5 CDS 14606517 14607005 14606517 ID=MsG0580025157.01.T01:cds;Parent=MsG0580025157.01.T01
Gene Sequence

>MsG0580025157.01.T01

ATGGGTGAAGCTAAGGAAATATGGTCAGCACCAATAACACCTAGAACAGGAAATTCATTGATGGGAACACCTAGGGTTGCATCACCACCAGTGTCATGTCCACCTTCACAGCTTCATTCACCATCTCTAACAAGATCACCACTTCTTCAATCAGAGAATGGAGATGCACCACATCCTAAGAGTAAGACTCCAAAGACTCCTAGAACACCAAGAATGTCTTTGACACCAAGGTTTATTACCCCTTTAGGAAGTCCTATGAGGAAAGCTTTGAGACTAACTAAGCTTGATCCTCAAGATGCTTGGCTTCCAATCACTGAGTCTAGGAATGGTAACAAATATTATGCTGCTTTTCATACTCTTTGTTCTGGGATTGGTATTCAAGCTCTTGTTCTTCCTGTTGCATTCACTATTCTTGGTTGGACTTGGGGAATATTAAGCTTGACAATAGCATTCATATGGCAACTTTACACCTTATGGTTGCTCGTCCATCTTCACGAATCCGTCGAGAACGGTATTCGCTACAGTCGATACCTTCAACTCTGCTTCGCTACTTTCGGTGAGAAACTTGGGAAATTACTAGCATTGTTTCCAATATTGTACCTATCAGCAGGAACATGTACTACATTGATCATCATAGGAGGATCAACAGCAAGAACATTCTATCAAGTTGTATGTGGAGACCATTGCAATCCCAAACCTATGACCACTGTTGAATGGTACTTGGTCTTTACATGTGCAGCTGTGGTCCTATCTCAGTTACCAAACTTGAATTCAATTGCTGGAATTTCCCTCATTGGAGCAGTCACTGCTGTAGGGTATTGTACTTCCATTTGGGTTACCTCTGTGGCACAGGGTGCCCTACCAGGGGTGAACTATAATCCTGTGACTGGTGAAAACAAGGTTGAAAATGCTTTTAGTGTGCTTAATGCCCTAGGTATCATTGCTTTTGCCTTTAGAGGTCACAATCTCATCCTTGAAATTCAGGCTACTATGCCTTCAAGTGAGAAGCATCCATCACATGTGCCCATGTGGAAAGGAGTGAAGGCTTCTTACACACTCATTGCTGCCTGCTTGTTTCCCTTGGCTATTGGTGGCTATTGGGCTTATGGTCAATTGATTCCTGCAAACGGAGGAATGCTCACGGCCCTATACCAATTTCATTCTCAAGACGTATCAAAATTTGTACTTGGGATGACCAGCTTTTTCGTAGTAGTAAATGGTTTGTGTTCATTTCAAATATATGGCATGCCGGCTTTCGATGACATGGAATCAGTATACACCACTAGATGGAAGAAGCCGTGCCCGTGGTGGCTCCGAGTAATTTTTCGAGTCTTCTTCGGGTTTTTGTGCTTCTTCATAGGAGTTGCTATTCCATTTTTGTCTAGCTTAGCTGGTTTGATTGGAGGAATAGCATTACCAGTGACATTGGCATACCCATGTTTTATGTGGCTCAAAGTAAAGAAACCAAAGAAGTATAGTTTCATGTGGTATCTCAATTGGTTCTTGGGAACATTTGGAGTTGCTCTAAGTGTCATATTAGTTACAGCTAGTATATATGTTATTATTGATACTGGTGTTAATGTGAGCTTTTTCAACCCTCAGTAG
Protein sequence

>MsG0580025157.01.T01

MGEAKEIWSAPITPRTGNSLMGTPRVASPPVSCPPSQLHSPSLTRSPLLQSENGDAPHPKSKTPKTPRTPRMSLTPRFITPLGSPMRKALRLTKLDPQDAWLPITESRNGNKYYAAFHTLCSGIGIQALVLPVAFTILGWTWGILSLTIAFIWQLYTLWLLVHLHESVENGIRYSRYLQLCFATFGEKLGKLLALFPILYLSAGTCTTLIIIGGSTARTFYQVVCGDHCNPKPMTTVEWYLVFTCAAVVLSQLPNLNSIAGISLIGAVTAVGYCTSIWVTSVAQGALPGVNYNPVTGENKVENAFSVLNALGIIAFAFRGHNLILEIQATMPSSEKHPSHVPMWKGVKASYTLIAACLFPLAIGGYWAYGQLIPANGGMLTALYQFHSQDVSKFVLGMTSFFVVVNGLCSFQIYGMPAFDDMESVYTTRWKKPCPWWLRVIFRVFFGFLCFFIGVAIPFLSSLAGLIGGIALPVTLAYPCFMWLKVKKPKKYSFMWYLNWFLGTFGVALSVILVTASIYVIIDTGVNVSFFNPQ*