AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0580025748.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0580025748.01.T01 MTR_5g033930 79.845 258 3 1 1 209 1 258 4.40e-147 409
MsG0580025748.01.T01 MTR_4g071550 74.319 257 16 1 2 208 3 259 6.32e-135 379
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0580025748.01.T01 AT5G05670 78.495 186 40 0 24 209 75 260 5.50e-111 318
MsG0580025748.01.T01 AT5G05670 78.495 186 40 0 24 209 75 260 5.50e-111 318
MsG0580025748.01.T01 AT2G18770 73.262 187 49 1 24 209 74 260 4.70e-94 275
MsG0580025748.01.T01 AT2G18770 73.262 187 49 1 24 209 84 270 5.62e-94 275

Find 69 sgRNAs with CRISPR-Local

Find 198 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCAGATGCTTCTGGTTTAAC+TGG 0.275558 5:+23693080 MsG0580025748.01.T01:CDS
ATGAATGGGGTTGTTCCTTT+TGG 0.277860 5:+23693198 MsG0580025748.01.T01:three_prime_UTR
GTTACAACTGCAGATGCTTC+TGG 0.291063 5:+23693071 MsG0580025748.01.T01:CDS
TCTGAGGCAGCACGACAATT+TGG 0.303245 5:-23691911 None:intergenic
AGTCTTTGTTGTTGATGCTT+TGG 0.322358 5:+23691880 MsG0580025748.01.T01:CDS
GTTACAAATGAGTTTACTTT+GGG 0.344400 5:+23693005 MsG0580025748.01.T01:CDS
TTGTCTGCGGATAAATTCTT+TGG 0.351055 5:-23692238 None:intergenic
AGAACAAAAGTGTCTTCATT+AGG 0.354849 5:-23691500 None:intergenic
GAGCACTGTGTAAAGGAAAA+TGG 0.367007 5:-23693041 None:intergenic
AAACTAGGGAGGGGAGGGTC+AGG 0.368032 5:+23693258 MsG0580025748.01.T01:three_prime_UTR
GTTCATATTGTCGATGTTCC+CGG 0.376135 5:+23691803 MsG0580025748.01.T01:CDS
AAACTAAATCCATTATGAAT+GGG 0.382047 5:+23693184 MsG0580025748.01.T01:three_prime_UTR
TAAACTAAATCCATTATGAA+TGG 0.387586 5:+23693183 MsG0580025748.01.T01:three_prime_UTR
CGTTACAAATGAGTTTACTT+TGG 0.387659 5:+23693004 MsG0580025748.01.T01:CDS
AGGAACAACCCCATTCATAA+TGG 0.396699 5:-23693193 None:intergenic
TATAATCAAAGCAACATTCC+AGG 0.398790 5:-23693327 None:intergenic
TAGGGATGGCTCTACTCATC+AGG 0.414751 5:+23691457 MsG0580025748.01.T01:CDS
GGGTCGAAGACGAGAATGTC+CGG 0.421087 5:-23691822 None:intergenic
AGAATTTATCCGCAGACAAA+TGG 0.431731 5:+23692242 MsG0580025748.01.T01:CDS
AGGCAAGTATTCGTCCAACT+TGG 0.442314 5:-23691843 None:intergenic
CCTATATGATCTGTTGACTA+AGG 0.443119 5:+23692146 MsG0580025748.01.T01:CDS
AATCATTAGCCACATTCAAC+AGG 0.475198 5:-23690506 None:intergenic
ATAGAATTCATTGGAAGCCC+TGG 0.476990 5:+23693309 MsG0580025748.01.T01:three_prime_UTR
TTCTCGTCTTCGACCCAAGT+TGG 0.477721 5:+23691829 MsG0580025748.01.T01:CDS
CCTTAGTCAACAGATCATAT+AGG 0.491713 5:-23692146 None:intergenic
AGGGTAGGAATCACTATGTT+GGG 0.493397 5:+23693278 MsG0580025748.01.T01:three_prime_UTR
CAGATGCTTCTGGTTTAACT+GGG 0.498230 5:+23693081 MsG0580025748.01.T01:CDS
GATATGAAGATAGAATTCAT+TGG 0.506096 5:+23693300 MsG0580025748.01.T01:three_prime_UTR
GTAAAGGAAAATGGCTCGCC+GGG 0.508392 5:-23693032 None:intergenic
TGCTTGTGTCAGCTTAGGGA+TGG 0.510480 5:+23691443 MsG0580025748.01.T01:intron
AGCACACGTGAAGCCATAGC+TGG 0.510778 5:+23693133 MsG0580025748.01.T01:exon
TCAGGGTACTGTTACATCAA+TGG 0.510908 5:+23691475 MsG0580025748.01.T01:CDS
GAATACTTGCCTCAAGCAGC+TGG 0.521571 5:+23691854 MsG0580025748.01.T01:CDS
CAGGGTAGGAATCACTATGT+TGG 0.533210 5:+23693277 MsG0580025748.01.T01:three_prime_UTR
TGTAAAGGAAAATGGCTCGC+CGG 0.533348 5:-23693033 None:intergenic
CTAAGAAACTAGGGAGGGGA+GGG 0.535808 5:+23693253 MsG0580025748.01.T01:three_prime_UTR
TTAAACATAATATCCAGCTA+TGG 0.541252 5:-23693146 None:intergenic
TGAGTTAGAGCACTGTGTAA+AGG 0.542716 5:-23693048 None:intergenic
GGTGTGAGCAGTGACTTTGT+CGG 0.543485 5:-23692217 None:intergenic
ACAGAAGGGAAAGATAAAAC+CGG 0.543621 5:+23691781 MsG0580025748.01.T01:intron
AACTAAATCCATTATGAATG+GGG 0.543924 5:+23693185 MsG0580025748.01.T01:three_prime_UTR
TCTTAAAACTCAACACAGGT+TGG 0.545537 5:+23693229 MsG0580025748.01.T01:three_prime_UTR
GGCAAGTATTCGTCCAACTT+GGG 0.560624 5:-23691842 None:intergenic
GGAACATCGACAATATGAAC+CGG 0.564715 5:-23691800 None:intergenic
ACAGGTTGGACTAAGAAACT+AGG 0.565687 5:+23693243 MsG0580025748.01.T01:three_prime_UTR
AACTAGGGAGGGGAGGGTCA+GGG 0.568837 5:+23693259 MsG0580025748.01.T01:three_prime_UTR
ATAATCAAAGCAACATTCCA+GGG 0.571819 5:-23693326 None:intergenic
TTTCTTTCTCCATTTGTCTG+CGG 0.575071 5:-23692251 None:intergenic
CTATATGATCTGTTGACTAA+GGG 0.576986 5:+23692147 MsG0580025748.01.T01:CDS
CAGGTTGGACTAAGAAACTA+GGG 0.581292 5:+23693244 MsG0580025748.01.T01:three_prime_UTR
GGTCGAAGACGAGAATGTCC+GGG 0.590963 5:-23691821 None:intergenic
AAGACTATGCCAGCTGCTTG+AGG 0.591483 5:-23691863 None:intergenic
ACTAAGAAACTAGGGAGGGG+AGG 0.599630 5:+23693252 MsG0580025748.01.T01:three_prime_UTR
TACATCTTAAAACTCAACAC+AGG 0.601787 5:+23693225 MsG0580025748.01.T01:three_prime_UTR
CAATGCAAGAATTAGAGCAA+TGG 0.602654 5:+23690466 None:intergenic
AGCTTCTCACCTGTTGAATG+TGG 0.611228 5:+23690497 MsG0580025748.01.T01:CDS
AGGGAGGGGAGGGTCAGGGT+AGG 0.612890 5:+23693263 MsG0580025748.01.T01:three_prime_UTR
GGCTAATGATTATCTTCGCG+AGG 0.613770 5:+23690518 MsG0580025748.01.T01:CDS
TACAAATGAGTTTACTTTGG+GGG 0.622620 5:+23693007 MsG0580025748.01.T01:CDS
GCAAGAATTAGAGCAATGGA+AGG 0.628448 5:+23690470 MsG0580025748.01.T01:CDS
AGGGATGGCTCTACTCATCA+GGG 0.649429 5:+23691458 MsG0580025748.01.T01:CDS
TTGGACTAAGAAACTAGGGA+GGG 0.661488 5:+23693248 MsG0580025748.01.T01:three_prime_UTR
TCTTCATGGGGAAACAACCA+AGG 0.674371 5:+23691520 MsG0580025748.01.T01:CDS
TTGTTGCAGAGAATAAGCAG+TGG 0.683463 5:-23692192 None:intergenic
TGGACTAAGAAACTAGGGAG+GGG 0.684655 5:+23693249 MsG0580025748.01.T01:three_prime_UTR
TTACAAATGAGTTTACTTTG+GGG 0.685005 5:+23693006 MsG0580025748.01.T01:CDS
AGATGCTTCTGGTTTAACTG+GGG 0.698873 5:+23693082 MsG0580025748.01.T01:CDS
GTTGGACTAAGAAACTAGGG+AGG 0.713195 5:+23693247 MsG0580025748.01.T01:three_prime_UTR
TGACTAAGGGAAGTGTTGTG+AGG 0.730491 5:+23692160 MsG0580025748.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAGAAATAAATTGATTTTTA+AGG + Chr5:23691113-23691132 MsG0580025748.01.T01:intron 10.0%
!! CACAAAAAAAAAAAAAAAAC+AGG - Chr5:23690862-23690881 None:intergenic 15.0%
!!! ATTTTTATTTTTGTAACAGA+AGG + Chr5:23691766-23691785 MsG0580025748.01.T01:intron 15.0%
!!! TTTTTATTTTTGTAACAGAA+GGG + Chr5:23691767-23691786 MsG0580025748.01.T01:intron 15.0%
!! AAAATACATGAGACAATATA+TGG - Chr5:23691745-23691764 None:intergenic 20.0%
!! AAACTAAATCCATTATGAAT+GGG + Chr5:23693184-23693203 MsG0580025748.01.T01:three_prime_UTR 20.0%
!! AGTAAAGGTAAACAAATTTA+AGG - Chr5:23692292-23692311 None:intergenic 20.0%
!! CTAATATAATAACATGCTTT+CGG - Chr5:23691314-23691333 None:intergenic 20.0%
!! CTTATGATAGTTTAATGATT+TGG + Chr5:23691700-23691719 MsG0580025748.01.T01:intron 20.0%
!! GCATAATATAATAAGATGAA+AGG - Chr5:23692342-23692361 None:intergenic 20.0%
!! TAAACTAAATCCATTATGAA+TGG + Chr5:23693183-23693202 MsG0580025748.01.T01:three_prime_UTR 20.0%
!! TAGTTTAGTCTGTAATATTA+CGG + Chr5:23691191-23691210 MsG0580025748.01.T01:intron 20.0%
!!! TTTAAGATGTAAAAACCAAA+AGG - Chr5:23693216-23693235 None:intergenic 20.0%
! AACTAAATCCATTATGAATG+GGG + Chr5:23693185-23693204 MsG0580025748.01.T01:three_prime_UTR 25.0%
! AAGCATGTTATTATATTAGC+TGG + Chr5:23691315-23691334 MsG0580025748.01.T01:intron 25.0%
! ACAATATATGGTCTATTGTA+TGG - Chr5:23691733-23691752 None:intergenic 25.0%
! ACTAGTAAAACATACAGAAT+TGG - Chr5:23691362-23691381 None:intergenic 25.0%
! CAACTAAACCAAAAGAATTT+AGG - Chr5:23690813-23690832 None:intergenic 25.0%
! GATATGAAGATAGAATTCAT+TGG + Chr5:23693300-23693319 MsG0580025748.01.T01:three_prime_UTR 25.0%
! GTTACAAATGAGTTTACTTT+GGG + Chr5:23693005-23693024 MsG0580025748.01.T01:CDS 25.0%
! GTTCTATCATAAACCATATT+TGG - Chr5:23692772-23692791 None:intergenic 25.0%
! TGGTTTATGATAGAACATTA+TGG + Chr5:23692776-23692795 MsG0580025748.01.T01:intron 25.0%
! TTAAACATAATATCCAGCTA+TGG - Chr5:23693149-23693168 None:intergenic 25.0%
! TTACAAATGAGTTTACTTTG+GGG + Chr5:23693006-23693025 MsG0580025748.01.T01:CDS 25.0%
! TTATATTAGCTGGTATTACA+TGG + Chr5:23691325-23691344 MsG0580025748.01.T01:intron 25.0%
! TTTGTGATATTTGGCAATTA+TGG + Chr5:23691049-23691068 MsG0580025748.01.T01:intron 25.0%
!! ATGGTATACCTAAATTCTTT+TGG + Chr5:23690802-23690821 MsG0580025748.01.T01:intron 25.0%
!! ATTTTCATGATTTCATCTGT+TGG + Chr5:23692904-23692923 MsG0580025748.01.T01:intron 25.0%
!! GTTAATTGAAGAAACACTTT+TGG + Chr5:23691644-23691663 MsG0580025748.01.T01:intron 25.0%
!!! ACTTTTTCAGCGAAAAATTA+CGG + Chr5:23692952-23692971 MsG0580025748.01.T01:intron 25.0%
!!! CTAAATTCTTTTGGTTTAGT+TGG + Chr5:23690811-23690830 MsG0580025748.01.T01:intron 25.0%
AAATACTTGCATGAATGTAC+AGG + Chr5:23691564-23691583 MsG0580025748.01.T01:intron 30.0%
ACTACTACACAAGCAATATT+TGG - Chr5:23691249-23691268 None:intergenic 30.0%
ACTCAACCAATAATTTGACT+GGG - Chr5:23692473-23692492 None:intergenic 30.0%
AGATCTAGAGATTAATGAGT+TGG + Chr5:23692744-23692763 MsG0580025748.01.T01:intron 30.0%
ATAATCAAAGCAACATTCCA+GGG - Chr5:23693329-23693348 None:intergenic 30.0%
CAAATGGAGAAAGAAATGTA+TGG + Chr5:23692258-23692277 MsG0580025748.01.T01:intron 30.0%
CGTTACAAATGAGTTTACTT+TGG + Chr5:23693004-23693023 MsG0580025748.01.T01:CDS 30.0%
GACATTTAGATTCTGTAGTA+AGG + Chr5:23692641-23692660 MsG0580025748.01.T01:intron 30.0%
GATGATAACTAGCAACATAA+TGG - Chr5:23691950-23691969 None:intergenic 30.0%
TACAAATGAGTTTACTTTGG+GGG + Chr5:23693007-23693026 MsG0580025748.01.T01:CDS 30.0%
TACATCTTAAAACTCAACAC+AGG + Chr5:23693225-23693244 MsG0580025748.01.T01:three_prime_UTR 30.0%
TACTCAACCAATAATTTGAC+TGG - Chr5:23692474-23692493 None:intergenic 30.0%
TATAATCAAAGCAACATTCC+AGG - Chr5:23693330-23693349 None:intergenic 30.0%
TCTGTAATATTACGGCAAAA+AGG + Chr5:23691199-23691218 MsG0580025748.01.T01:intron 30.0%
TCTGTTCTGTTTGTGATATT+TGG + Chr5:23691040-23691059 MsG0580025748.01.T01:intron 30.0%
TTAACACCCAGTCAAATTAT+TGG + Chr5:23692464-23692483 MsG0580025748.01.T01:intron 30.0%
TTGAATTACGACTGTGATAT+TGG + Chr5:23691074-23691093 MsG0580025748.01.T01:intron 30.0%
TTTCGCTGAAAAAGTAACAA+GGG - Chr5:23692947-23692966 None:intergenic 30.0%
! AAGACACTTTTGTTCTTCAT+GGG + Chr5:23691507-23691526 MsG0580025748.01.T01:CDS 30.0%
! ACATTTTGTTACACGTGTTA+AGG + Chr5:23692121-23692140 MsG0580025748.01.T01:intron 30.0%
! CTATATGATCTGTTGACTAA+GGG + Chr5:23692147-23692166 MsG0580025748.01.T01:CDS 30.0%
! GCTTCTCTTATAGTTTTTCT+AGG - Chr5:23692715-23692734 None:intergenic 30.0%
! TAATGAGTTGGATCCAAATA+TGG + Chr5:23692756-23692775 MsG0580025748.01.T01:intron 30.0%
! TTTTCGCTGAAAAAGTAACA+AGG - Chr5:23692948-23692967 None:intergenic 30.0%
!! AGAACAAAAGTGTCTTCATT+AGG - Chr5:23691503-23691522 None:intergenic 30.0%
!! TAATGGTTAAAGTGTTGTTG+AGG + Chr5:23690911-23690930 MsG0580025748.01.T01:intron 30.0%
!!! CTTTTTCAGCGAAAAATTAC+GGG + Chr5:23692953-23692972 MsG0580025748.01.T01:intron 30.0%
!!! GATTTTTAAGGTCTAATCTG+TGG + Chr5:23691125-23691144 MsG0580025748.01.T01:intron 30.0%
!!! GTTTTTTGTTTGTTGTAGTG+CGG + Chr5:23690670-23690689 MsG0580025748.01.T01:intron 30.0%
AAAATAGACTTAGGCGGTTT+GGG + Chr5:23692597-23692616 MsG0580025748.01.T01:intron 35.0%
AATCATTAGCCACATTCAAC+AGG - Chr5:23690509-23690528 None:intergenic 35.0%
ACAGAAGGGAAAGATAAAAC+CGG + Chr5:23691781-23691800 MsG0580025748.01.T01:intron 35.0%
ACCTATAGTAGAAAAGATGG+TGG + Chr5:23692574-23692593 MsG0580025748.01.T01:intron 35.0%
ACTGATATCCTTTCTTTCTC+AGG - Chr5:23692085-23692104 None:intergenic 35.0%
AGAATTTATCCGCAGACAAA+TGG + Chr5:23692242-23692261 MsG0580025748.01.T01:CDS 35.0%
AGAGTGAAAACTCAACAAGA+TGG - Chr5:23690620-23690639 None:intergenic 35.0%
AGCACCTATAGTAGAAAAGA+TGG + Chr5:23692571-23692590 MsG0580025748.01.T01:intron 35.0%
ATATTAGAGAGAGAGAGAGT+TGG + Chr5:23692545-23692564 MsG0580025748.01.T01:intron 35.0%
ATGTGTGATAAGACTAGATG+AGG + Chr5:23692505-23692524 MsG0580025748.01.T01:intron 35.0%
ATTAGCTGGTATTACATGGT+GGG + Chr5:23691329-23691348 MsG0580025748.01.T01:intron 35.0%
ATTGGTTGAGTATGTTGTGT+TGG + Chr5:23692482-23692501 MsG0580025748.01.T01:intron 35.0%
CCTTAGTCAACAGATCATAT+AGG - Chr5:23692149-23692168 None:intergenic 35.0%
CTGCATGATCAAATGAGTAA+AGG - Chr5:23692307-23692326 None:intergenic 35.0%
GAAAACTGTTCTCTTCTATC+AGG + Chr5:23690749-23690768 MsG0580025748.01.T01:intron 35.0%
GCACAGGAAATATGAATAGA+AGG - Chr5:23691394-23691413 None:intergenic 35.0%
TAGTAGTCGTATGTGAGAAA+AGG + Chr5:23691262-23691281 MsG0580025748.01.T01:intron 35.0%
TAGTGAGTGAATTGTGATGT+AGG + Chr5:23691015-23691034 MsG0580025748.01.T01:intron 35.0%
TATTAGAGAGAGAGAGAGTT+GGG + Chr5:23692546-23692565 MsG0580025748.01.T01:intron 35.0%
TATTAGCTGGTATTACATGG+TGG + Chr5:23691328-23691347 MsG0580025748.01.T01:intron 35.0%
TCAATATTAGCTGTAAGCCA+TGG + Chr5:23691991-23692010 MsG0580025748.01.T01:intron 35.0%
TCACTCACGTAAAAGAAGTA+GGG - Chr5:23690592-23690611 None:intergenic 35.0%
TCTTAAAACTCAACACAGGT+TGG + Chr5:23693229-23693248 MsG0580025748.01.T01:three_prime_UTR 35.0%
TTCTCAGGAAAAGTGAGAAA+TGG - Chr5:23692070-23692089 None:intergenic 35.0%
TTGCATGAATGTACAGGTTT+AGG + Chr5:23691570-23691589 MsG0580025748.01.T01:intron 35.0%
TTGTCTGCGGATAAATTCTT+TGG - Chr5:23692241-23692260 None:intergenic 35.0%
TTTCTTTCTCCATTTGTCTG+CGG - Chr5:23692254-23692273 None:intergenic 35.0%
! ACTAGCAACATAATGGAGAA+AGG - Chr5:23691943-23691962 None:intergenic 35.0%
! AGACACTTTTGTTCTTCATG+GGG + Chr5:23691508-23691527 MsG0580025748.01.T01:CDS 35.0%
! CCTATATGATCTGTTGACTA+AGG + Chr5:23692146-23692165 MsG0580025748.01.T01:CDS 35.0%
! GAAGACACTTTTGTTCTTCA+TGG + Chr5:23691506-23691525 MsG0580025748.01.T01:CDS 35.0%
! TCCACCATCTTTTCTACTAT+AGG - Chr5:23692578-23692597 None:intergenic 35.0%
!! AGATGGTGGAAAATAGACTT+AGG + Chr5:23692588-23692607 MsG0580025748.01.T01:intron 35.0%
!! AGTCTTTGTTGTTGATGCTT+TGG + Chr5:23691880-23691899 MsG0580025748.01.T01:CDS 35.0%
!! CATTTGTTGTTGCTGTTGAT+TGG + Chr5:23692371-23692390 MsG0580025748.01.T01:intron 35.0%
!! TCACTTTTCCTGAGAAAGAA+AGG + Chr5:23692074-23692093 MsG0580025748.01.T01:intron 35.0%
!!! TTCTTTTGGTTTAGTTGGTG+TGG + Chr5:23690816-23690835 MsG0580025748.01.T01:intron 35.0%
AAATAGACTTAGGCGGTTTG+GGG + Chr5:23692598-23692617 MsG0580025748.01.T01:intron 40.0%
AGGAACAACCCCATTCATAA+TGG - Chr5:23693196-23693215 None:intergenic 40.0%
AGGGTAGGAATCACTATGTT+GGG + Chr5:23693278-23693297 MsG0580025748.01.T01:three_prime_UTR 40.0%
AGTTAGATCACTAGAGACAG+TGG + Chr5:23692685-23692704 MsG0580025748.01.T01:intron 40.0%
ATAGAATTCATTGGAAGCCC+TGG + Chr5:23693309-23693328 MsG0580025748.01.T01:three_prime_UTR 40.0%
ATATTAGCTGTAAGCCATGG+CGG + Chr5:23691994-23692013 MsG0580025748.01.T01:intron 40.0%
ATTAGAGAGAGAGAGAGTTG+GGG + Chr5:23692547-23692566 MsG0580025748.01.T01:intron 40.0%
CCATTGCTCTAATTCTTGCA+TGG - Chr5:23690469-23690488 None:intergenic 40.0%
CTCAAATCCTTCTTCTCTCA+TGG + Chr5:23692432-23692451 MsG0580025748.01.T01:intron 40.0%
CTCACTCACGTAAAAGAAGT+AGG - Chr5:23690593-23690612 None:intergenic 40.0%
CTTATGCTTGTGTCAGCTTA+GGG + Chr5:23691439-23691458 MsG0580025748.01.T01:intron 40.0%
GAAAATAGACTTAGGCGGTT+TGG + Chr5:23692596-23692615 MsG0580025748.01.T01:intron 40.0%
GCAAGAATTAGAGCAATGGA+AGG + Chr5:23690470-23690489 MsG0580025748.01.T01:CDS 40.0%
GGAACATCGACAATATGAAC+CGG - Chr5:23691803-23691822 None:intergenic 40.0%
GTATGTGAGAAAAGGAGTCA+AGG + Chr5:23691270-23691289 MsG0580025748.01.T01:intron 40.0%
GTCTAACACCATTGTGTTGA+CGG + Chr5:23690710-23690729 MsG0580025748.01.T01:intron 40.0%
GTGATAAGACTAGATGAGGT+AGG + Chr5:23692509-23692528 MsG0580025748.01.T01:intron 40.0%
GTTCATATTGTCGATGTTCC+CGG + Chr5:23691803-23691822 MsG0580025748.01.T01:CDS 40.0%
TCACTTAGTGGGATAAGACT+TGG + Chr5:23692824-23692843 MsG0580025748.01.T01:intron 40.0%
TCTTATGCTTGTGTCAGCTT+AGG + Chr5:23691438-23691457 MsG0580025748.01.T01:intron 40.0%
TGAGAAAAGGAGTCAAGGTT+AGG + Chr5:23691275-23691294 MsG0580025748.01.T01:intron 40.0%
TGCAAGTATTTGAGTGCAAG+AGG - Chr5:23691555-23691574 None:intergenic 40.0%
TGGAGAAAGGAATTACTCTG+AGG - Chr5:23691930-23691949 None:intergenic 40.0%
TGGTGGAAAATAGACTTAGG+CGG + Chr5:23692591-23692610 MsG0580025748.01.T01:intron 40.0%
TTGGACTAAGAAACTAGGGA+GGG + Chr5:23693248-23693267 MsG0580025748.01.T01:three_prime_UTR 40.0%
TTGTTGCAGAGAATAAGCAG+TGG - Chr5:23692195-23692214 None:intergenic 40.0%
! AAGTCTTATCCCACTAAGTG+AGG - Chr5:23692825-23692844 None:intergenic 40.0%
! ACAGGTTGGACTAAGAAACT+AGG + Chr5:23693243-23693262 MsG0580025748.01.T01:three_prime_UTR 40.0%
! ATGAATGGGGTTGTTCCTTT+TGG + Chr5:23693198-23693217 MsG0580025748.01.T01:three_prime_UTR 40.0%
! CAACACAATGGTGTTAGACT+TGG - Chr5:23690709-23690728 None:intergenic 40.0%
! CAGGTTGGACTAAGAAACTA+GGG + Chr5:23693244-23693263 MsG0580025748.01.T01:three_prime_UTR 40.0%
! GAGCACTGTGTAAAGGAAAA+TGG - Chr5:23693044-23693063 None:intergenic 40.0%
! GTTTAGTTGGTGTGGTGAAT+TGG + Chr5:23690824-23690843 MsG0580025748.01.T01:intron 40.0%
! TCTAACACCATTGTGTTGAC+GGG + Chr5:23690711-23690730 MsG0580025748.01.T01:intron 40.0%
!! AGATGCTTCTGGTTTAACTG+GGG + Chr5:23693082-23693101 MsG0580025748.01.T01:CDS 40.0%
!! CAGATGCTTCTGGTTTAACT+GGG + Chr5:23693081-23693100 MsG0580025748.01.T01:CDS 40.0%
!! TCAGGGTACTGTTACATCAA+TGG + Chr5:23691475-23691494 MsG0580025748.01.T01:CDS 40.0%
!! TGAGTTAGAGCACTGTGTAA+AGG - Chr5:23693051-23693070 None:intergenic 40.0%
ACTAAGTCCCGTCAACACAA+TGG - Chr5:23690721-23690740 None:intergenic 45.0%
AGCTTCTCACCTGTTGAATG+TGG + Chr5:23690497-23690516 MsG0580025748.01.T01:CDS 45.0%
AGGCAAGTATTCGTCCAACT+TGG - Chr5:23691846-23691865 None:intergenic 45.0%
AGTAAGGAGAGTAGATCAGC+TGG + Chr5:23692657-23692676 MsG0580025748.01.T01:intron 45.0%
CAAGAACATTACGTCAGCAC+AGG - Chr5:23691410-23691429 None:intergenic 45.0%
CAGGGTAGGAATCACTATGT+TGG + Chr5:23693277-23693296 MsG0580025748.01.T01:three_prime_UTR 45.0%
CCATTAGCCATGAGAGAAGA+AGG - Chr5:23692442-23692461 None:intergenic 45.0%
CCTTCTTCTCTCATGGCTAA+TGG + Chr5:23692439-23692458 MsG0580025748.01.T01:intron 45.0%
CGTGAAAACAGCAATAGCAG+CGG - Chr5:23690568-23690587 None:intergenic 45.0%
CTTATCCCACTAAGTGAGGT+CGG - Chr5:23692821-23692840 None:intergenic 45.0%
GAAAAGGAGTCAAGGTTAGG+TGG + Chr5:23691278-23691297 MsG0580025748.01.T01:intron 45.0%
GGCAAGTATTCGTCCAACTT+GGG - Chr5:23691845-23691864 None:intergenic 45.0%
GGCTAATGATTATCTTCGCG+AGG + Chr5:23690518-23690537 MsG0580025748.01.T01:CDS 45.0%
GGTAAGCTTTCAGTCATTGC+TGG + Chr5:23691146-23691165 MsG0580025748.01.T01:intron 45.0%
GTTACAACTGCAGATGCTTC+TGG + Chr5:23693071-23693090 MsG0580025748.01.T01:CDS 45.0%
GTTGGACTAAGAAACTAGGG+AGG + Chr5:23693247-23693266 MsG0580025748.01.T01:three_prime_UTR 45.0%
TATTAGCTGTAAGCCATGGC+GGG + Chr5:23691995-23692014 MsG0580025748.01.T01:intron 45.0%
TCTTCATGGGGAAACAACCA+AGG + Chr5:23691520-23691539 MsG0580025748.01.T01:CDS 45.0%
TGGACTAAGAAACTAGGGAG+GGG + Chr5:23693249-23693268 MsG0580025748.01.T01:three_prime_UTR 45.0%
TGTAAAGGAAAATGGCTCGC+CGG - Chr5:23693036-23693055 None:intergenic 45.0%
TGTGTGGCATGTTGCTGTAA+TGG + Chr5:23690894-23690913 MsG0580025748.01.T01:intron 45.0%
TGTGTGTGTGTTTGTGTGTG+TGG + Chr5:23690878-23690897 MsG0580025748.01.T01:intron 45.0%
! ATTGTGTTGACGGGACTTAG+TGG + Chr5:23690720-23690739 MsG0580025748.01.T01:intron 45.0%
! CTGTGCTGACGTAATGTTCT+TGG + Chr5:23691408-23691427 MsG0580025748.01.T01:intron 45.0%
! TTGTGTTGACGGGACTTAGT+GGG + Chr5:23690721-23690740 MsG0580025748.01.T01:intron 45.0%
!! GCAGATGCTTCTGGTTTAAC+TGG + Chr5:23693080-23693099 MsG0580025748.01.T01:CDS 45.0%
!! TGACTAAGGGAAGTGTTGTG+AGG + Chr5:23692160-23692179 MsG0580025748.01.T01:CDS 45.0%
!!! TAATGTTTTATTTTATTTTA+TGG + Chr5:23690783-23690802 MsG0580025748.01.T01:intron 5.0%
AAGACTATGCCAGCTGCTTG+AGG - Chr5:23691866-23691885 None:intergenic 50.0%
AAGGAGAGTAGATCAGCTGG+AGG + Chr5:23692660-23692679 MsG0580025748.01.T01:intron 50.0%
ACTAAGAAACTAGGGAGGGG+AGG + Chr5:23693252-23693271 MsG0580025748.01.T01:three_prime_UTR 50.0%
ACTAAGTGAGGTCGGCTACA+TGG - Chr5:23692813-23692832 None:intergenic 50.0%
ATGTAGCCGACCTCACTTAG+TGG + Chr5:23692812-23692831 MsG0580025748.01.T01:intron 50.0%
ATTAGCTGTAAGCCATGGCG+GGG + Chr5:23691996-23692015 MsG0580025748.01.T01:intron 50.0%
CTAAGAAACTAGGGAGGGGA+GGG + Chr5:23693253-23693272 MsG0580025748.01.T01:three_prime_UTR 50.0%
GAAAACAGCAATAGCAGCGG+CGG - Chr5:23690565-23690584 None:intergenic 50.0%
GAATACTTGCCTCAAGCAGC+TGG + Chr5:23691854-23691873 MsG0580025748.01.T01:CDS 50.0%
GCAAGAGGCTAACACTACCT+TGG - Chr5:23691540-23691559 None:intergenic 50.0%
GGTGTGAGCAGTGACTTTGT+CGG - Chr5:23692220-23692239 None:intergenic 50.0%
GTAAAGGAAAATGGCTCGCC+GGG - Chr5:23693035-23693054 None:intergenic 50.0%
TGCTTGTGTCAGCTTAGGGA+TGG + Chr5:23691443-23691462 MsG0580025748.01.T01:intron 50.0%
TGTAGCCGACCTCACTTAGT+GGG + Chr5:23692813-23692832 MsG0580025748.01.T01:intron 50.0%
TTCTCGTCTTCGACCCAAGT+TGG + Chr5:23691829-23691848 MsG0580025748.01.T01:CDS 50.0%
! AGGGATGGCTCTACTCATCA+GGG + Chr5:23691458-23691477 MsG0580025748.01.T01:CDS 50.0%
! GTTTTTAACACTCCCCGCCA+TGG - Chr5:23692011-23692030 None:intergenic 50.0%
! TAGGGATGGCTCTACTCATC+AGG + Chr5:23691457-23691476 MsG0580025748.01.T01:CDS 50.0%
! TCTGAGGCAGCACGACAATT+TGG - Chr5:23691914-23691933 None:intergenic 50.0%
AGCACACGTGAAGCCATAGC+TGG + Chr5:23693133-23693152 MsG0580025748.01.T01:exon 55.0%
GGGTCGAAGACGAGAATGTC+CGG - Chr5:23691825-23691844 None:intergenic 55.0%
GGTCGAAGACGAGAATGTCC+GGG - Chr5:23691824-23691843 None:intergenic 55.0%
TTGACGGGACTTAGTGGGAG+CGG + Chr5:23690726-23690745 MsG0580025748.01.T01:intron 55.0%
! ACTTAGGCGGTTTGGGGCTT+TGG + Chr5:23692604-23692623 MsG0580025748.01.T01:intron 55.0%
! CTTAGGCGGTTTGGGGCTTT+GGG + Chr5:23692605-23692624 MsG0580025748.01.T01:intron 55.0%
!! GAGTTTACTTTGGGGGTGCC+CGG + Chr5:23693014-23693033 MsG0580025748.01.T01:CDS 55.0%
AAACTAGGGAGGGGAGGGTC+AGG + Chr5:23693258-23693277 MsG0580025748.01.T01:three_prime_UTR 60.0%
AACTAGGGAGGGGAGGGTCA+GGG + Chr5:23693259-23693278 MsG0580025748.01.T01:three_prime_UTR 60.0%
AGCGGCGGCATAGAGCTGAT+TGG - Chr5:23690550-23690569 None:intergenic 60.0%
CGGCGGCATAGAGCTGATTG+GGG - Chr5:23690548-23690567 None:intergenic 60.0%
GCGGCATAGAGCTGATTGGG+GGG - Chr5:23690546-23690565 None:intergenic 60.0%
GCGGCGGCATAGAGCTGATT+GGG - Chr5:23690549-23690568 None:intergenic 60.0%
GGCGGCATAGAGCTGATTGG+GGG - Chr5:23690547-23690566 None:intergenic 60.0%
TGACGGGACTTAGTGGGAGC+GGG + Chr5:23690727-23690746 MsG0580025748.01.T01:intron 60.0%
AGGGAGGGGAGGGTCAGGGT+AGG + Chr5:23693263-23693282 MsG0580025748.01.T01:three_prime_UTR 70.0%
Chromosome Type Strat End Strand Name
Chr5 gene 23690468 23693373 23690468 ID=MsG0580025748.01;Name=MsG0580025748.01
Chr5 mRNA 23690468 23693373 23690468 ID=MsG0580025748.01.T01;Parent=MsG0580025748.01;Name=MsG0580025748.01.T01;_AED=0.39;_eAED=0.39;_QI=0|0.75|0.8|1|1|1|5|222|209
Chr5 exon 23690468 23690539 23690468 ID=MsG0580025748.01.T01:exon:4436;Parent=MsG0580025748.01.T01
Chr5 exon 23691455 23691541 23691455 ID=MsG0580025748.01.T01:exon:4437;Parent=MsG0580025748.01.T01
Chr5 exon 23691785 23691933 23691785 ID=MsG0580025748.01.T01:exon:4438;Parent=MsG0580025748.01.T01
Chr5 exon 23692143 23692274 23692143 ID=MsG0580025748.01.T01:exon:4439;Parent=MsG0580025748.01.T01
Chr5 exon 23692962 23693373 23692962 ID=MsG0580025748.01.T01:exon:4440;Parent=MsG0580025748.01.T01
Chr5 CDS 23690468 23690539 23690468 ID=MsG0580025748.01.T01:cds;Parent=MsG0580025748.01.T01
Chr5 CDS 23691455 23691541 23691455 ID=MsG0580025748.01.T01:cds;Parent=MsG0580025748.01.T01
Chr5 CDS 23691785 23691933 23691785 ID=MsG0580025748.01.T01:cds;Parent=MsG0580025748.01.T01
Chr5 CDS 23692143 23692274 23692143 ID=MsG0580025748.01.T01:cds;Parent=MsG0580025748.01.T01
Chr5 CDS 23692962 23693151 23692962 ID=MsG0580025748.01.T01:cds;Parent=MsG0580025748.01.T01
Chr5 three_prime_UTR 23693152 23693373 23693152 ID=MsG0580025748.01.T01:three_prime_utr;Parent=MsG0580025748.01.T01
Gene Sequence

>MsG0580025748.01.T01

ATGCAAGAATTAGAGCAATGGAAGGAACAAGCTTCTCACCTGTTGAATGTGGCTAATGATTATCTTCGCGAGCTTAGGGATGGCTCTACTCATCAGGGTACTGTTACATCAATGGAACCTAATGAAGACACTTTTGTTCTTCATGGGGAAACAACCAAGAAGGGAAAGATAAAACCGGTTCATATTGTCGATGTTCCCGGACATTCTCGTCTTCGACCCAAGTTGGACGAATACTTGCCTCAAGCAGCTGGCATAGTCTTTGTTGTTGATGCTTTGGACTTCTTACCAAATTGTCGTGCTGCCTCAGAGTACCTATATGATCTGTTGACTAAGGGAAGTGTTGTGAGGAAGAAGATTCCACTGCTTATTCTCTGCAACAAAACCGACAAAGTCACTGCTCACACCAAAGAATTTATCCGCAGACAAATGGAGAAAGAAATCGAAAAATTACGGGCTTCGAGAAGTGCAGTTTCAGATGCTGACGTTACAAATGAGTTTACTTTGGGGGTGCCCGGCGAGCCATTTTCCTTTACACAGTGCTCTAACTCAGTTACAACTGCAGATGCTTCTGGTTTAACTGGGGAGATATCTCAGCTAGAAGAGTTTATCAGAGCACACGTGAAGCCATAG
Protein sequence

>MsG0580025748.01.T01

MQELEQWKEQASHLLNVANDYLRELRDGSTHQGTVTSMEPNEDTFVLHGETTKKGKIKPVHIVDVPGHSRLRPKLDEYLPQAAGIVFVVDALDFLPNCRAASEYLYDLLTKGSVVRKKIPLLILCNKTDKVTAHTKEFIRRQMEKEIEKLRASRSAVSDADVTNEFTLGVPGEPFSFTQCSNSVTTADASGLTGEISQLEEFIRAHVKP*