Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580025893.01.T01 | XP_003613423.1 | 95.312 | 192 | 9 | 0 | 1 | 192 | 1 | 192 | 5.03E-127 | 369 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580025893.01.T01 | Q9ZWS9 | 71.429 | 147 | 37 | 2 | 11 | 157 | 28 | 169 | 1.73E-69 | 215 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580025893.01.T01 | G7K5L8 | 95.312 | 192 | 9 | 0 | 1 | 192 | 1 | 192 | 2.40e-127 | 369 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|---|---|
| MsG0680030351.01 | MsG0580025893.01 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580025893.01.T01 | MTR_5g036480 | 95.312 | 192 | 9 | 0 | 1 | 192 | 1 | 192 | 6.10e-131 | 369 |
| MsG0580025893.01.T01 | MTR_1g049100 | 71.271 | 181 | 26 | 2 | 9 | 189 | 1 | 155 | 2.00e-83 | 247 |
| MsG0580025893.01.T01 | MTR_4g106590 | 71.233 | 146 | 37 | 2 | 15 | 159 | 25 | 166 | 1.43e-63 | 197 |
| MsG0580025893.01.T01 | MTR_3g078613 | 67.883 | 137 | 40 | 1 | 15 | 151 | 22 | 154 | 5.89e-60 | 187 |
| MsG0580025893.01.T01 | MTR_7g490310 | 60.265 | 151 | 55 | 2 | 15 | 160 | 8 | 158 | 6.20e-60 | 188 |
| MsG0580025893.01.T01 | MTR_3g078613 | 67.391 | 138 | 40 | 2 | 15 | 151 | 22 | 155 | 3.23e-58 | 183 |
| MsG0580025893.01.T01 | MTR_8g038620 | 58.108 | 148 | 56 | 2 | 15 | 157 | 8 | 154 | 2.28e-53 | 170 |
| MsG0580025893.01.T01 | MTR_3g093860 | 58.955 | 134 | 47 | 3 | 17 | 147 | 19 | 147 | 4.65e-50 | 160 |
| MsG0580025893.01.T01 | MTR_3g015490 | 53.472 | 144 | 59 | 2 | 15 | 153 | 3 | 143 | 1.77e-46 | 152 |
| MsG0580025893.01.T01 | MTR_3g088630 | 49.342 | 152 | 62 | 3 | 10 | 147 | 16 | 166 | 1.77e-45 | 151 |
| MsG0580025893.01.T01 | MTR_6g007460 | 39.801 | 201 | 61 | 5 | 7 | 153 | 3 | 197 | 2.21e-36 | 127 |
| MsG0580025893.01.T01 | MTR_4g061360 | 35.556 | 135 | 74 | 2 | 16 | 150 | 89 | 210 | 2.14e-18 | 84.0 |
| MsG0580025893.01.T01 | MTR_3g092780 | 28.497 | 193 | 112 | 4 | 16 | 195 | 56 | 235 | 3.14e-17 | 80.5 |
| MsG0580025893.01.T01 | MTR_3g092780 | 27.835 | 194 | 113 | 4 | 16 | 195 | 56 | 236 | 5.67e-17 | 79.7 |
| MsG0580025893.01.T01 | MTR_3g092780 | 28.497 | 193 | 112 | 4 | 16 | 195 | 56 | 235 | 3.34e-16 | 77.4 |
| MsG0580025893.01.T01 | MTR_3g092780 | 27.835 | 194 | 113 | 4 | 16 | 195 | 56 | 236 | 6.36e-16 | 76.6 |
| MsG0580025893.01.T01 | MTR_4g051330 | 57.143 | 56 | 24 | 0 | 98 | 153 | 77 | 132 | 1.50e-15 | 71.6 |
| MsG0580025893.01.T01 | MTR_8g024260 | 30.216 | 139 | 84 | 1 | 14 | 152 | 34 | 159 | 9.71e-15 | 73.2 |
| MsG0580025893.01.T01 | MTR_1g067110 | 27.604 | 192 | 112 | 4 | 18 | 195 | 87 | 265 | 1.21e-14 | 72.8 |
| MsG0580025893.01.T01 | MTR_7g118260 | 26.829 | 205 | 116 | 5 | 18 | 201 | 16 | 207 | 5.49e-14 | 70.9 |
| MsG0580025893.01.T01 | MTR_1g067110 | 27.041 | 196 | 116 | 4 | 14 | 195 | 83 | 265 | 3.53e-13 | 68.6 |
| MsG0580025893.01.T01 | MTR_7g118260 | 29.630 | 135 | 82 | 2 | 18 | 152 | 16 | 137 | 5.40e-13 | 67.8 |
| MsG0580025893.01.T01 | MTR_8g079940 | 26.190 | 168 | 104 | 4 | 16 | 179 | 29 | 180 | 6.35e-13 | 67.8 |
| MsG0580025893.01.T01 | MTR_4g131580 | 26.087 | 161 | 103 | 3 | 16 | 176 | 21 | 165 | 1.21e-12 | 67.0 |
| MsG0580025893.01.T01 | MTR_4g131600 | 26.627 | 169 | 104 | 5 | 18 | 186 | 26 | 174 | 6.33e-12 | 64.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580025893.01.T01 | AT1G59940 | 71.429 | 147 | 37 | 2 | 11 | 157 | 28 | 169 | 1.76e-70 | 215 |
| MsG0580025893.01.T01 | AT1G10470 | 75.362 | 138 | 30 | 1 | 11 | 148 | 15 | 148 | 3.62e-69 | 212 |
| MsG0580025893.01.T01 | AT1G59940 | 71.429 | 147 | 37 | 2 | 11 | 157 | 120 | 261 | 4.26e-69 | 215 |
| MsG0580025893.01.T01 | AT1G10470 | 75.362 | 138 | 30 | 1 | 11 | 148 | 29 | 162 | 5.36e-69 | 212 |
| MsG0580025893.01.T01 | AT3G48100 | 71.223 | 139 | 37 | 2 | 16 | 154 | 25 | 160 | 2.23e-64 | 198 |
| MsG0580025893.01.T01 | AT5G62920 | 75.385 | 130 | 26 | 2 | 16 | 144 | 25 | 149 | 4.67e-63 | 195 |
| MsG0580025893.01.T01 | AT1G19050 | 65.035 | 143 | 46 | 1 | 9 | 151 | 17 | 155 | 1.02e-59 | 187 |
| MsG0580025893.01.T01 | AT1G74890 | 70.769 | 130 | 34 | 1 | 15 | 144 | 17 | 142 | 6.35e-59 | 185 |
| MsG0580025893.01.T01 | AT3G57040 | 55.901 | 161 | 64 | 2 | 15 | 169 | 8 | 167 | 2.03e-57 | 182 |
| MsG0580025893.01.T01 | AT3G57040 | 55.901 | 161 | 64 | 2 | 15 | 169 | 8 | 167 | 2.03e-57 | 182 |
| MsG0580025893.01.T01 | AT2G41310 | 60.000 | 145 | 54 | 1 | 17 | 157 | 10 | 154 | 2.17e-56 | 179 |
| MsG0580025893.01.T01 | AT3G56380 | 59.701 | 134 | 51 | 1 | 14 | 147 | 18 | 148 | 4.74e-56 | 176 |
| MsG0580025893.01.T01 | AT2G40670 | 60.000 | 135 | 51 | 2 | 14 | 147 | 27 | 159 | 6.47e-55 | 173 |
| MsG0580025893.01.T01 | AT3G56380 | 59.259 | 135 | 51 | 2 | 14 | 147 | 18 | 149 | 2.47e-54 | 171 |
| MsG0580025893.01.T01 | AT2G40670 | 59.559 | 136 | 51 | 3 | 14 | 147 | 27 | 160 | 4.27e-53 | 169 |
| MsG0580025893.01.T01 | AT1G10470 | 73.077 | 52 | 14 | 0 | 97 | 148 | 35 | 86 | 1.93e-21 | 88.2 |
| MsG0580025893.01.T01 | AT2G07440 | 55.000 | 60 | 27 | 0 | 98 | 157 | 9 | 68 | 3.11e-15 | 70.5 |
| MsG0580025893.01.T01 | AT2G46790 | 29.630 | 135 | 82 | 2 | 16 | 150 | 37 | 158 | 1.06e-14 | 72.8 |
| MsG0580025893.01.T01 | AT2G46790 | 29.630 | 135 | 82 | 2 | 16 | 150 | 37 | 158 | 1.28e-14 | 72.8 |
| MsG0580025893.01.T01 | AT5G60100 | 34.586 | 133 | 74 | 2 | 18 | 150 | 66 | 185 | 1.28e-14 | 72.4 |
| MsG0580025893.01.T01 | AT5G60100 | 34.586 | 133 | 74 | 2 | 18 | 150 | 66 | 185 | 1.28e-14 | 72.4 |
| MsG0580025893.01.T01 | AT5G60100 | 34.586 | 133 | 74 | 2 | 18 | 150 | 66 | 185 | 1.28e-14 | 72.4 |
| MsG0580025893.01.T01 | AT5G24470 | 30.657 | 137 | 80 | 3 | 16 | 152 | 52 | 173 | 1.97e-14 | 72.0 |
| MsG0580025893.01.T01 | AT5G60100 | 34.586 | 133 | 74 | 2 | 18 | 150 | 66 | 185 | 2.59e-14 | 71.6 |
| MsG0580025893.01.T01 | AT5G60100 | 34.586 | 133 | 74 | 2 | 18 | 150 | 66 | 185 | 2.59e-14 | 71.6 |
| MsG0580025893.01.T01 | AT5G60100 | 34.586 | 133 | 74 | 2 | 18 | 150 | 66 | 185 | 2.59e-14 | 71.6 |
| MsG0580025893.01.T01 | AT5G60100 | 34.586 | 133 | 74 | 2 | 18 | 150 | 66 | 185 | 2.60e-14 | 71.6 |
| MsG0580025893.01.T01 | AT5G07210 | 32.576 | 132 | 72 | 3 | 15 | 146 | 15 | 129 | 1.18e-13 | 70.1 |
| MsG0580025893.01.T01 | AT5G02810 | 29.630 | 135 | 82 | 1 | 16 | 150 | 78 | 199 | 1.57e-13 | 69.7 |
| MsG0580025893.01.T01 | AT5G07210 | 30.714 | 140 | 72 | 4 | 15 | 146 | 15 | 137 | 3.52e-11 | 62.8 |
Find 53 sgRNAs with CRISPR-Local
Find 72 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AATAAGAGCACTACAATTTC+TGG | 0.202396 | 5:+26280794 | MsG0580025893.01.T01:CDS |
| ATCCCCTTTCTCTTTCTCTT+TGG | 0.247665 | 5:+26280443 | None:intergenic |
| TTCTCAAGAGGTTCATGTTT+TGG | 0.250601 | 5:+26280535 | MsG0580025893.01.T01:CDS |
| GTTTCCTTAGCCTGGTTTGA+AGG | 0.364670 | 5:+26280943 | MsG0580025893.01.T01:intron |
| CTCAAAATTTCAGCTTGTAA+AGG | 0.419180 | 5:+26280602 | MsG0580025893.01.T01:CDS |
| AACTCATAACCAGTCATTCC+TGG | 0.425647 | 5:-26280995 | None:intergenic |
| TAGCGATAACTTCACTGTCT+TGG | 0.452797 | 5:-26281574 | None:intergenic |
| AGCACTACAATTTCTGGGGT+TGG | 0.454081 | 5:+26280800 | MsG0580025893.01.T01:CDS |
| ATAAGAGCACTACAATTTCT+GGG | 0.455946 | 5:+26280795 | MsG0580025893.01.T01:CDS |
| TGAAAGTGTTGATGATGAAA+TGG | 0.456331 | 5:-26281699 | None:intergenic |
| TGAGTTGCTTAAGAAAATCA+AGG | 0.460054 | 5:+26281012 | MsG0580025893.01.T01:CDS |
| ATTACAGATTATTGCATGCC+AGG | 0.468259 | 5:+26280977 | MsG0580025893.01.T01:CDS |
| TATTGCATGCCAGGAATGAC+TGG | 0.472610 | 5:+26280986 | MsG0580025893.01.T01:CDS |
| TCAGAAGACATGATCACTAC+TGG | 0.477520 | 5:-26281157 | None:intergenic |
| TTAGTTACTGCAGTGGATAG+TGG | 0.477996 | 5:+26280771 | MsG0580025893.01.T01:intron |
| GGATAGGGATCAACAACAAA+AGG | 0.483740 | 5:+26281636 | MsG0580025893.01.T01:CDS |
| ACATCTTGCCACGCATTGAC+AGG | 0.484895 | 5:+26281182 | MsG0580025893.01.T01:CDS |
| AAGAGGTAATCAAGAATGTC+GGG | 0.486785 | 5:-26281761 | None:intergenic |
| GATGGTGATGGTGTAGGGAT+AGG | 0.492736 | 5:+26281620 | MsG0580025893.01.T01:CDS |
| TCCTTAGCCTGGTTTGAAGG+TGG | 0.500088 | 5:+26280946 | MsG0580025893.01.T01:intron |
| GCTTCCCGCTCTAACCTCCC+TGG | 0.501953 | 5:-26281552 | None:intergenic |
| ATCTGACGTGAAACGTTTGA+AGG | 0.502511 | 5:+26281517 | MsG0580025893.01.T01:CDS |
| TACTGGAATTGCTCTAAAAG+TGG | 0.506655 | 5:-26281140 | None:intergenic |
| GACAACCAGGGAGGTTAGAG+CGG | 0.506833 | 5:+26281547 | MsG0580025893.01.T01:CDS |
| ATGGTGATGGTGTAGGGATA+GGG | 0.509422 | 5:+26281621 | MsG0580025893.01.T01:CDS |
| AAAGAGGTAATCAAGAATGT+CGG | 0.535795 | 5:-26281762 | None:intergenic |
| TTGATCGTAAAGTCATTGAA+AGG | 0.541223 | 5:+26280576 | MsG0580025893.01.T01:CDS |
| ATAACGATGGTGATGGTGTA+GGG | 0.541250 | 5:+26281615 | MsG0580025893.01.T01:CDS |
| GATAACGATGGTGATGGTGT+AGG | 0.548802 | 5:+26281614 | MsG0580025893.01.T01:CDS |
| TTCACGTCAGATAATTTCAC+CGG | 0.562688 | 5:-26281506 | None:intergenic |
| AAGAATGTCGGGTGAAGACA+AGG | 0.567906 | 5:-26281750 | None:intergenic |
| TATTGATGTTGATTCTCAAG+AGG | 0.575024 | 5:+26280523 | MsG0580025893.01.T01:CDS |
| AGAGGATTTCATAGTGAAGC+CGG | 0.581417 | 5:+26281487 | MsG0580025893.01.T01:CDS |
| TCTGACGTGAAACGTTTGAA+GGG | 0.584866 | 5:+26281518 | MsG0580025893.01.T01:CDS |
| ACTAGATCCACCTTCAAACC+AGG | 0.592739 | 5:-26280953 | None:intergenic |
| GAAGACAAGGGTGATGATGA+AGG | 0.594875 | 5:-26281737 | None:intergenic |
| ACAACCAGGGAGGTTAGAGC+GGG | 0.595105 | 5:+26281548 | MsG0580025893.01.T01:CDS |
| TGAAGGGTTACATGACAACC+AGG | 0.599838 | 5:+26281534 | MsG0580025893.01.T01:CDS |
| TACTAGTACCTGTCAATGCG+TGG | 0.604768 | 5:-26281190 | None:intergenic |
| GTTATCGCTACCAACGGTGT+TGG | 0.609134 | 5:+26281587 | MsG0580025893.01.T01:CDS |
| AAATGTAGATGCTTGGAGGA+AGG | 0.613553 | 5:+26281461 | MsG0580025893.01.T01:intron |
| GATGATGAAGGTGACGGTGA+TGG | 0.632034 | 5:-26281725 | None:intergenic |
| GTTATCGTTACCAACACCGT+TGG | 0.634811 | 5:-26281597 | None:intergenic |
| ATGCTTGGAGGAAGGTGCAG+AGG | 0.640084 | 5:+26281469 | MsG0580025893.01.T01:CDS |
| TAAGAGCACTACAATTTCTG+GGG | 0.651134 | 5:+26280796 | MsG0580025893.01.T01:CDS |
| AGTGTTGATGATGAAATGGA+TGG | 0.658494 | 5:-26281695 | None:intergenic |
| AGTGAAGTTATCGCTACCAA+CGG | 0.690720 | 5:+26281581 | MsG0580025893.01.T01:CDS |
| GGTAACGATAACGATGGTGA+TGG | 0.701040 | 5:+26281608 | MsG0580025893.01.T01:CDS |
| AAGGGTGATGATGAAGGTGA+CGG | 0.717497 | 5:-26281731 | None:intergenic |
| GAAGGGTTACATGACAACCA+GGG | 0.738936 | 5:+26281535 | MsG0580025893.01.T01:CDS |
| AGAATGTCGGGTGAAGACAA+GGG | 0.739456 | 5:-26281749 | None:intergenic |
| GGTGTTGGTAACGATAACGA+TGG | 0.744946 | 5:+26281602 | MsG0580025893.01.T01:CDS |
| GGGTTACATGACAACCAGGG+AGG | 0.751767 | 5:+26281538 | MsG0580025893.01.T01:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TACTTTACTTTGTATTAAAT+TGG | - | Chr5:26281350-26281369 | None:intergenic | 15.0% |
| !! | TATGTTAAAATTATTGTTAG+TGG | + | Chr5:26281378-26281397 | MsG0580025893.01.T01:intron | 15.0% |
| !!! | TTTCTTTTTCTCATTTTTAA+AGG | + | Chr5:26280671-26280690 | MsG0580025893.01.T01:intron | 15.0% |
| !! | ACAAAACAAAAAGAAGAAAA+TGG | + | Chr5:26280646-26280665 | MsG0580025893.01.T01:intron | 20.0% |
| !! | CAATAAAGTGTAAAAATGAA+GGG | - | Chr5:26281062-26281081 | None:intergenic | 20.0% |
| !! | GAAATTATGATGTTGAAAAA+TGG | + | Chr5:26281417-26281436 | MsG0580025893.01.T01:intron | 20.0% |
| !! | TCAATAAAGTGTAAAAATGA+AGG | - | Chr5:26281063-26281082 | None:intergenic | 20.0% |
| ! | ATTGAAAAAATGTAGATGCT+TGG | + | Chr5:26281454-26281473 | MsG0580025893.01.T01:intron | 25.0% |
| !! | TCTCTTTGAAGAAAAAAAGA+GGG | - | Chr5:26280477-26280496 | None:intergenic | 25.0% |
| !!! | TTTATTTTTAGTTACTGCAG+TGG | + | Chr5:26280764-26280783 | MsG0580025893.01.T01:intron | 25.0% |
| AAAGAGGTAATCAAGAATGT+CGG | - | Chr5:26281765-26281784 | None:intergenic | 30.0% | |
| CTCAAAATTTCAGCTTGTAA+AGG | + | Chr5:26280602-26280621 | MsG0580025893.01.T01:CDS | 30.0% | |
| TGAGTTGCTTAAGAAAATCA+AGG | + | Chr5:26281012-26281031 | MsG0580025893.01.T01:CDS | 30.0% | |
| TTGATCGTAAAGTCATTGAA+AGG | + | Chr5:26280576-26280595 | MsG0580025893.01.T01:CDS | 30.0% | |
| ! | CTACATGTTTTCATACAAAG+TGG | + | Chr5:26281315-26281334 | MsG0580025893.01.T01:intron | 30.0% |
| ! | CTCTCTTTGAAGAAAAAAAG+AGG | - | Chr5:26280478-26280497 | None:intergenic | 30.0% |
| ! | TTTTTCTTCAAAGAGAGTGA+TGG | + | Chr5:26280481-26280500 | MsG0580025893.01.T01:exon | 30.0% |
| !! | AATAAGAGCACTACAATTTC+TGG | + | Chr5:26280794-26280813 | MsG0580025893.01.T01:CDS | 30.0% |
| !! | ATAAGAGCACTACAATTTCT+GGG | + | Chr5:26280795-26280814 | MsG0580025893.01.T01:CDS | 30.0% |
| !! | TATTGATGTTGATTCTCAAG+AGG | + | Chr5:26280523-26280542 | MsG0580025893.01.T01:CDS | 30.0% |
| !! | TGAAAGTGTTGATGATGAAA+TGG | - | Chr5:26281702-26281721 | None:intergenic | 30.0% |
| !!! | TTTATTTTGTTTCCTTAGCC+TGG | + | Chr5:26280935-26280954 | MsG0580025893.01.T01:intron | 30.0% |
| AAGAGGTAATCAAGAATGTC+GGG | - | Chr5:26281764-26281783 | None:intergenic | 35.0% | |
| ATTACAGATTATTGCATGCC+AGG | + | Chr5:26280977-26280996 | MsG0580025893.01.T01:CDS | 35.0% | |
| GAAAAAATGTAGATGCTTGG+AGG | + | Chr5:26281457-26281476 | MsG0580025893.01.T01:intron | 35.0% | |
| TCCTGCTTCAAATTGAAACT+TGG | - | Chr5:26281115-26281134 | None:intergenic | 35.0% | |
| TTCACGTCAGATAATTTCAC+CGG | - | Chr5:26281509-26281528 | None:intergenic | 35.0% | |
| ! | TCCAAGTTTCAATTTGAAGC+AGG | + | Chr5:26281111-26281130 | MsG0580025893.01.T01:intron | 35.0% |
| ! | TTCTCAAGAGGTTCATGTTT+TGG | + | Chr5:26280535-26280554 | MsG0580025893.01.T01:CDS | 35.0% |
| !! | AGTGTTGATGATGAAATGGA+TGG | - | Chr5:26281698-26281717 | None:intergenic | 35.0% |
| !! | TAAGAGCACTACAATTTCTG+GGG | + | Chr5:26280796-26280815 | MsG0580025893.01.T01:CDS | 35.0% |
| !! | TACTGGAATTGCTCTAAAAG+TGG | - | Chr5:26281143-26281162 | None:intergenic | 35.0% |
| AAATGTAGATGCTTGGAGGA+AGG | + | Chr5:26281461-26281480 | MsG0580025893.01.T01:intron | 40.0% | |
| AACTCATAACCAGTCATTCC+TGG | - | Chr5:26280998-26281017 | None:intergenic | 40.0% | |
| AGAGGATTTCATAGTGAAGC+CGG | + | Chr5:26281487-26281506 | MsG0580025893.01.T01:CDS | 40.0% | |
| AGTGAAGTTATCGCTACCAA+CGG | + | Chr5:26281581-26281600 | MsG0580025893.01.T01:CDS | 40.0% | |
| ATCTGACGTGAAACGTTTGA+AGG | + | Chr5:26281517-26281536 | MsG0580025893.01.T01:CDS | 40.0% | |
| GGATAGGGATCAACAACAAA+AGG | + | Chr5:26281636-26281655 | MsG0580025893.01.T01:CDS | 40.0% | |
| TAGCGATAACTTCACTGTCT+TGG | - | Chr5:26281577-26281596 | None:intergenic | 40.0% | |
| TCAGAAGACATGATCACTAC+TGG | - | Chr5:26281160-26281179 | None:intergenic | 40.0% | |
| TCTGACGTGAAACGTTTGAA+GGG | + | Chr5:26281518-26281537 | MsG0580025893.01.T01:CDS | 40.0% | |
| TTAGTTACTGCAGTGGATAG+TGG | + | Chr5:26280771-26280790 | MsG0580025893.01.T01:intron | 40.0% | |
| !! | ATAACGATGGTGATGGTGTA+GGG | + | Chr5:26281615-26281634 | MsG0580025893.01.T01:CDS | 40.0% |
| AAGAATGTCGGGTGAAGACA+AGG | - | Chr5:26281753-26281772 | None:intergenic | 45.0% | |
| ACTAGATCCACCTTCAAACC+AGG | - | Chr5:26280956-26280975 | None:intergenic | 45.0% | |
| AGAATGTCGGGTGAAGACAA+GGG | - | Chr5:26281752-26281771 | None:intergenic | 45.0% | |
| GAAGGGTTACATGACAACCA+GGG | + | Chr5:26281535-26281554 | MsG0580025893.01.T01:CDS | 45.0% | |
| GGTAACGATAACGATGGTGA+TGG | + | Chr5:26281608-26281627 | MsG0580025893.01.T01:CDS | 45.0% | |
| GTTATCGTTACCAACACCGT+TGG | - | Chr5:26281600-26281619 | None:intergenic | 45.0% | |
| TACTAGTACCTGTCAATGCG+TGG | - | Chr5:26281193-26281212 | None:intergenic | 45.0% | |
| TATTGCATGCCAGGAATGAC+TGG | + | Chr5:26280986-26281005 | MsG0580025893.01.T01:CDS | 45.0% | |
| TGAAGGGTTACATGACAACC+AGG | + | Chr5:26281534-26281553 | MsG0580025893.01.T01:CDS | 45.0% | |
| ! | AAGGGTGATGATGAAGGTGA+CGG | - | Chr5:26281734-26281753 | None:intergenic | 45.0% |
| ! | GAAGACAAGGGTGATGATGA+AGG | - | Chr5:26281740-26281759 | None:intergenic | 45.0% |
| ! | GTTTCCTTAGCCTGGTTTGA+AGG | + | Chr5:26280943-26280962 | MsG0580025893.01.T01:intron | 45.0% |
| !! | AGCACTACAATTTCTGGGGT+TGG | + | Chr5:26280800-26280819 | MsG0580025893.01.T01:CDS | 45.0% |
| !! | ATGGTGATGGTGTAGGGATA+GGG | + | Chr5:26281621-26281640 | MsG0580025893.01.T01:CDS | 45.0% |
| !! | GATAACGATGGTGATGGTGT+AGG | + | Chr5:26281614-26281633 | MsG0580025893.01.T01:CDS | 45.0% |
| !! | GGTGTTGGTAACGATAACGA+TGG | + | Chr5:26281602-26281621 | MsG0580025893.01.T01:CDS | 45.0% |
| !! | CTAAAATAAAAAATTTAAAT+TGG | - | Chr5:26280871-26280890 | None:intergenic | 5.0% |
| !!! | ATTTAAATTTTTTATTTTAG+CGG | + | Chr5:26280871-26280890 | MsG0580025893.01.T01:intron | 5.0% |
| GTTATCGCTACCAACGGTGT+TGG | + | Chr5:26281587-26281606 | MsG0580025893.01.T01:CDS | 50.0% | |
| TCCACCTTCAAACCAGGCTA+AGG | - | Chr5:26280950-26280969 | None:intergenic | 50.0% | |
| ! | ACATCTTGCCACGCATTGAC+AGG | + | Chr5:26281182-26281201 | MsG0580025893.01.T01:CDS | 50.0% |
| ! | GATGATGAAGGTGACGGTGA+TGG | - | Chr5:26281728-26281747 | None:intergenic | 50.0% |
| ! | TCCTTAGCCTGGTTTGAAGG+TGG | + | Chr5:26280946-26280965 | MsG0580025893.01.T01:intron | 50.0% |
| !! | GATGGTGATGGTGTAGGGAT+AGG | + | Chr5:26281620-26281639 | MsG0580025893.01.T01:CDS | 50.0% |
| ACAACCAGGGAGGTTAGAGC+GGG | + | Chr5:26281548-26281567 | MsG0580025893.01.T01:CDS | 55.0% | |
| GACAACCAGGGAGGTTAGAG+CGG | + | Chr5:26281547-26281566 | MsG0580025893.01.T01:CDS | 55.0% | |
| GGGTTACATGACAACCAGGG+AGG | + | Chr5:26281538-26281557 | MsG0580025893.01.T01:CDS | 55.0% | |
| ! | ATGCTTGGAGGAAGGTGCAG+AGG | + | Chr5:26281469-26281488 | MsG0580025893.01.T01:CDS | 55.0% |
| GCTTCCCGCTCTAACCTCCC+TGG | - | Chr5:26281555-26281574 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr5 | gene | 26280453 | 26281798 | 26280453 | ID=MsG0580025893.01;Name=MsG0580025893.01 |
| Chr5 | mRNA | 26280453 | 26281798 | 26280453 | ID=MsG0580025893.01.T01;Parent=MsG0580025893.01;Name=MsG0580025893.01.T01;_AED=0.29;_eAED=0.29;_QI=47|1|1|1|1|1|5|11|226 |
| Chr5 | exon | 26280453 | 26280623 | 26280453 | ID=MsG0580025893.01.T01:exon:5122;Parent=MsG0580025893.01.T01 |
| Chr5 | exon | 26280775 | 26280860 | 26280775 | ID=MsG0580025893.01.T01:exon:5123;Parent=MsG0580025893.01.T01 |
| Chr5 | exon | 26280953 | 26281033 | 26280953 | ID=MsG0580025893.01.T01:exon:5124;Parent=MsG0580025893.01.T01 |
| Chr5 | exon | 26281133 | 26281203 | 26281133 | ID=MsG0580025893.01.T01:exon:5125;Parent=MsG0580025893.01.T01 |
| Chr5 | exon | 26281469 | 26281798 | 26281469 | ID=MsG0580025893.01.T01:exon:5126;Parent=MsG0580025893.01.T01 |
| Chr5 | five_prime_UTR | 26280453 | 26280499 | 26280453 | ID=MsG0580025893.01.T01:five_prime_utr;Parent=MsG0580025893.01.T01 |
| Chr5 | CDS | 26280500 | 26280623 | 26280500 | ID=MsG0580025893.01.T01:cds;Parent=MsG0580025893.01.T01 |
| Chr5 | CDS | 26280775 | 26280860 | 26280775 | ID=MsG0580025893.01.T01:cds;Parent=MsG0580025893.01.T01 |
| Chr5 | CDS | 26280953 | 26281033 | 26280953 | ID=MsG0580025893.01.T01:cds;Parent=MsG0580025893.01.T01 |
| Chr5 | CDS | 26281133 | 26281203 | 26281133 | ID=MsG0580025893.01.T01:cds;Parent=MsG0580025893.01.T01 |
| Chr5 | CDS | 26281469 | 26281787 | 26281469 | ID=MsG0580025893.01.T01:cds;Parent=MsG0580025893.01.T01 |
| Chr5 | three_prime_UTR | 26281788 | 26281798 | 26281788 | ID=MsG0580025893.01.T01:three_prime_utr;Parent=MsG0580025893.01.T01 |
| Gene Sequence |
| Protein sequence |
