AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0580027086.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0580027086.01.T01 MTR_0002s0900 94.208 259 5 1 1 259 1 249 6.40e-156 434
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 115 sgRNAs with CRISPR-Local

Find 134 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATTCACTCTAAGCATTTATT+TGG 0.130098 5:+52915889 MsG0580027086.01.T01:three_prime_UTR
AAAATTTGTTTCTTATTTAT+TGG 0.170736 5:-52914872 None:intergenic
GCAAAATGTAAAATCATTTC+TGG 0.203021 5:+52915915 MsG0580027086.01.T01:three_prime_UTR
GGTTGAGATGGTGGGACTTT+TGG 0.221155 5:-52915175 None:intergenic
TCTTTGCTCGGGAACATTAA+TGG 0.234396 5:+52915997 MsG0580027086.01.T01:three_prime_UTR
ACCAGCACCTAGTCTTAATT+TGG 0.252717 5:+52915591 MsG0580027086.01.T01:CDS
GTGCAGGGGCTGGTGGTGTT+TGG 0.254459 5:-52915306 None:intergenic
GGCACCGGTGTTGCCTTTAC+TGG 0.259559 5:-52915328 None:intergenic
GGAGTTGGAGCTTGCTTTAC+GGG 0.291651 5:-52915361 None:intergenic
AACTTTGTTGGTGCAGTTGC+TGG 0.294409 5:-52914998 None:intergenic
CAACAATGGCTACAATGTTC+TGG 0.312570 5:+52914924 MsG0580027086.01.T01:exon
GATTTGGGTGCCACAGTTAC+AGG 0.314060 5:-52915106 None:intergenic
GCCTTTACTGGTGCAGGGGC+TGG 0.315701 5:-52915316 None:intergenic
GTAGTGTCAGTTGGTGGTGC+AGG 0.317908 5:-52915544 None:intergenic
GTTGTTGCCGTCGGGGTTGT+AGG 0.332649 5:-52915025 None:intergenic
TGCTTTACGGGTGCAGGTGC+TGG 0.339945 5:-52915349 None:intergenic
TTTGGAGCTGGTGATGTAAC+TGG 0.346048 5:-52915133 None:intergenic
TGATGTAACTGGAGCAGATT+TGG 0.350958 5:-52915122 None:intergenic
GCAGGCGTTGGTGCGGGTAT+TGG 0.363471 5:-52915403 None:intergenic
GTTGTAGGTGGCAACTTTGT+TGG 0.367631 5:-52915010 None:intergenic
GGTGTTGCCTTTACTGGTGC+AGG 0.376572 5:-52915322 None:intergenic
ACTGGTGTTGGCGATATCTT+TGG 0.377556 5:-52915283 None:intergenic
GGTACAGGTGCTTCTATTGC+AGG 0.381012 5:-52915421 None:intergenic
TTCACTCTAAGCATTTATTT+GGG 0.391874 5:+52915890 MsG0580027086.01.T01:three_prime_UTR
GTGTCTTCTTCTCTTGTGCT+TGG 0.394153 5:-52915458 None:intergenic
GGAAATATATGGACAACAAT+TGG 0.401495 5:+52915798 MsG0580027086.01.T01:CDS
TTGGTGCAGTTGCTGGTGCT+TGG 0.402362 5:-52914991 None:intergenic
GGGGCTGGTGGTGTTTGGAC+TGG 0.403895 5:-52915301 None:intergenic
TGACCGGTGTTGTTGCCGTC+GGG 0.404756 5:-52915033 None:intergenic
AGGAGTTGGAGCTTGCTTTA+CGG 0.406353 5:-52915362 None:intergenic
CTAAGCCTCAGTTGCCTGCT+AGG 0.409371 5:+52914959 MsG0580027086.01.T01:CDS
TAACAAGGAACGTTAACTAA+TGG 0.419485 5:-52914744 None:intergenic
GGTATTGGTGGCGGAGTAGC+AGG 0.423733 5:-52915388 None:intergenic
GGTGATGCAACTGGTGGTGG+TGG 0.431894 5:-52915244 None:intergenic
GGTGGTGGTGGCAACGGTGG+TGG 0.432351 5:-52915232 None:intergenic
GGAGCTTGCTTTACGGGTGC+AGG 0.434187 5:-52915355 None:intergenic
GGTGGTGTTTGGACTGGTGT+TGG 0.441567 5:-52915295 None:intergenic
GGCAACGGTGGTGGCAATGT+TGG 0.443251 5:-52915223 None:intergenic
TCTATTGCAGGCGTTGGTGC+GGG 0.447779 5:-52915409 None:intergenic
TAGTGTCAGTTGGTGGTGCA+GGG 0.449666 5:-52915543 None:intergenic
AACAATGGCTACAATGTTCT+GGG 0.454166 5:+52914925 MsG0580027086.01.T01:exon
TGGTGCAGTTGCTGGTGCTT+GGG 0.457269 5:-52914990 None:intergenic
GTGTTGCCTTTACTGGTGCA+GGG 0.457541 5:-52915321 None:intergenic
TCTTCTTCTCTTGTGCTTGG+AGG 0.458461 5:-52915455 None:intergenic
TACAGGTGGTTGGCTTGTGA+TGG 0.460935 5:-52915089 None:intergenic
TATTTGTCATGATCTTTGCT+CGG 0.463205 5:+52915985 MsG0580027086.01.T01:three_prime_UTR
GAGGACTCAGGTGCTGGTAC+AGG 0.472814 5:-52915436 None:intergenic
GCACCATCAAATCATCTTCA+AGG 0.474299 5:+52915774 MsG0580027086.01.T01:CDS
GGCGTTGGTGCGGGTATTGG+TGG 0.482974 5:-52915400 None:intergenic
TGCTTGGAGGACTCAGGTGC+TGG 0.484001 5:-52915442 None:intergenic
ACAGGTGGTTGGCTTGTGAT+GGG 0.484311 5:-52915088 None:intergenic
ATTTGTCATGATCTTTGCTC+GGG 0.489414 5:+52915986 MsG0580027086.01.T01:three_prime_UTR
TTTACTGGTGCAGGGGCTGG+TGG 0.492899 5:-52915313 None:intergenic
CTCTTGTGCTTGGAGGACTC+AGG 0.493811 5:-52915448 None:intergenic
GGAGTAGCAGGTGCAGGAGT+TGG 0.494641 5:-52915376 None:intergenic
ACCAGCCCCTGCACCAGTAA+AGG 0.495470 5:+52915315 MsG0580027086.01.T01:CDS
GATGTAACTGGAGCAGATTT+GGG 0.499241 5:-52915121 None:intergenic
GCAACTGGTGGTGGTGGCAA+CGG 0.500084 5:-52915238 None:intergenic
ACGGGTGCAGGTGCTGGCAC+CGG 0.501284 5:-52915343 None:intergenic
GTGCCACAGTTACAGGTGGT+TGG 0.502443 5:-52915099 None:intergenic
GTCGGTGGTTGTGTCGTGAC+CGG 0.503316 5:-52915049 None:intergenic
TTCTATTGCAGGCGTTGGTG+CGG 0.508108 5:-52915410 None:intergenic
GGTGCTTCTATTGCAGGCGT+TGG 0.508992 5:-52915415 None:intergenic
GGTGGTGATGCAACTGGTGG+TGG 0.509644 5:-52915247 None:intergenic
TTGTGAATAACGGTTGGTGC+TGG 0.510521 5:-52915514 None:intergenic
TGCTGGTGCCGGTGCTGTGT+CGG 0.511565 5:-52915575 None:intergenic
ATAACGGTTGGTGCTGGAGC+TGG 0.526295 5:-52915508 None:intergenic
AACGTTGGTGGTGATGCAAC+TGG 0.529779 5:-52915253 None:intergenic
TGGCTATATGATCAAGCAGA+TGG 0.530374 5:-52914852 None:intergenic
GTTGGTGCGGGTATTGGTGG+CGG 0.533550 5:-52915397 None:intergenic
ACTGGTGGTGGTGGCAACGG+TGG 0.543224 5:-52915235 None:intergenic
GGCAATGTTGGAGTTGAGAC+AGG 0.546727 5:-52915211 None:intergenic
CACCATCAAATCATCTTCAA+GGG 0.548248 5:+52915775 MsG0580027086.01.T01:CDS
CTTGGGCGTTGAATCCTAGC+AGG 0.551054 5:-52914973 None:intergenic
TTTGGTGATGGTAACGTTGG+TGG 0.551419 5:-52915265 None:intergenic
GTGACCGGTGTTGTTGCCGT+CGG 0.558742 5:-52915034 None:intergenic
GTGTCAGTTGGTGGTGCAGG+GGG 0.563770 5:-52915541 None:intergenic
GACATGTAACTCATAACTAT+CGG 0.564959 5:-52916067 None:intergenic
ATAATGTCACAATCAAATGA+AGG 0.566822 5:+52914785 MsG0580027086.01.T01:five_prime_UTR
GGTGGCGGAGTAGCAGGTGC+AGG 0.568762 5:-52915382 None:intergenic
GGAGGAGATGCTGCAACGGT+CGG 0.571300 5:-52915067 None:intergenic
GAAGACACAGACACAAGCAC+AGG 0.572543 5:+52915473 MsG0580027086.01.T01:CDS
AGTGTCAGTTGGTGGTGCAG+GGG 0.580128 5:-52915542 None:intergenic
GAATCTGCTGTAGTGTCAGT+TGG 0.580132 5:-52915553 None:intergenic
GGAGATGCTGCAACGGTCGG+TGG 0.580831 5:-52915064 None:intergenic
GGCTATATGATCAAGCAGAT+GGG 0.584327 5:-52914851 None:intergenic
TTAACTAATGGAAAATGTGT+AGG 0.585170 5:-52914732 None:intergenic
ACCAAATTAAGACTAGGTGC+TGG 0.590933 5:-52915592 None:intergenic
ATCTTTGGTGATGGTAACGT+TGG 0.591470 5:-52915268 None:intergenic
TCTGCTGTAGTGTCAGTTGG+TGG 0.593136 5:-52915550 None:intergenic
TTAAGACTAGGTGCTGGTGC+CGG 0.593527 5:-52915586 None:intergenic
GTTGGCGATATCTTTGGTGA+TGG 0.598261 5:-52915277 None:intergenic
AAGCCAACCACCTGTAACTG+TGG 0.598494 5:+52915096 MsG0580027086.01.T01:CDS
ATGGGTAGAAACGTATGTAG+TGG 0.600710 5:-52914833 None:intergenic
AAACAATTCACACACAACAA+TGG 0.601217 5:+52914910 MsG0580027086.01.T01:exon
AACCCCGACGGCAACAACAC+CGG 0.607226 5:+52915030 MsG0580027086.01.T01:CDS
AGCAGATTCCGACACAGCAC+CGG 0.609241 5:+52915567 MsG0580027086.01.T01:CDS
TGTTGCCTTTACTGGTGCAG+GGG 0.612199 5:-52915320 None:intergenic
GTTGCCGTCGGGGTTGTAGG+TGG 0.615116 5:-52915022 None:intergenic
CGTATGTAGTGGATCATCTG+TGG 0.615371 5:-52914822 None:intergenic
TGCACCAGTAAAGGCAACAC+CGG 0.624106 5:+52915324 MsG0580027086.01.T01:CDS
TGAATCCTAGCAGGCAACTG+AGG 0.626656 5:-52914964 None:intergenic
GGACTCTTGTGAATAACGGT+TGG 0.628505 5:-52915520 None:intergenic
GACCGGTGTTGTTGCCGTCG+GGG 0.629511 5:-52915032 None:intergenic
TGTAGTGGATCATCTGTGGA+AGG 0.633308 5:-52914818 None:intergenic
TTGGGTGCCACAGTTACAGG+TGG 0.636595 5:-52915103 None:intergenic
AATATTACCAAATTAAGACT+AGG 0.639002 5:-52915598 None:intergenic
TTGTCATTGATCATCTAACA+AGG 0.644044 5:-52914759 None:intergenic
ACCATCAAATCATCTTCAAG+GGG 0.646558 5:+52915776 MsG0580027086.01.T01:CDS
GGTGGTTGGCTTGTGATGGG+AGG 0.647884 5:-52915085 None:intergenic
GATGGGAGGAGATGCTGCAA+CGG 0.657437 5:-52915071 None:intergenic
AGTGGATCATCTGTGGAAGG+AGG 0.682629 5:-52914815 None:intergenic
GTTGCCACCTACAACCCCGA+CGG 0.703871 5:+52915018 MsG0580027086.01.T01:CDS
CCATCAAATCATCTTCAAGG+GGG 0.727590 5:+52915777 MsG0580027086.01.T01:CDS
GTTGGTGGTGATGCAACTGG+TGG 0.749628 5:-52915250 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATTATATAAATATATATAT+TGG + Chr5:52915646-52915665 MsG0580027086.01.T01:intron 0.0%
!!! AAAATTTGTTTCTTATTTAT+TGG - Chr5:52914875-52914894 None:intergenic 10.0%
!! ATTGTAATTTGATATTTCAA+TGG - Chr5:52915629-52915648 None:intergenic 15.0%
!! AATATTACCAAATTAAGACT+AGG - Chr5:52915601-52915620 None:intergenic 20.0%
! ATAATGTCACAATCAAATGA+AGG + Chr5:52914785-52914804 MsG0580027086.01.T01:five_prime_UTR 25.0%
! ATTCACTCTAAGCATTTATT+TGG + Chr5:52915889-52915908 MsG0580027086.01.T01:three_prime_UTR 25.0%
! GCAAAATGTAAAATCATTTC+TGG + Chr5:52915915-52915934 MsG0580027086.01.T01:three_prime_UTR 25.0%
! TTAACTAATGGAAAATGTGT+AGG - Chr5:52914735-52914754 None:intergenic 25.0%
! TTCACTCTAAGCATTTATTT+GGG + Chr5:52915890-52915909 MsG0580027086.01.T01:three_prime_UTR 25.0%
!! AATTTTGAATCATGGAAATC+AGG + Chr5:52916026-52916045 MsG0580027086.01.T01:three_prime_UTR 25.0%
!! GGATATGAAATTTTGAATCA+TGG + Chr5:52916018-52916037 MsG0580027086.01.T01:three_prime_UTR 25.0%
!!! ATGTTTTTTACTTCACAGAA+TGG + Chr5:52915750-52915769 MsG0580027086.01.T01:intron 25.0%
AAACAATTCACACACAACAA+TGG + Chr5:52914910-52914929 MsG0580027086.01.T01:exon 30.0%
ACAAGTGTTAGTATTCGATT+TGG - Chr5:52915700-52915719 None:intergenic 30.0%
GGAAATATATGGACAACAAT+TGG + Chr5:52915798-52915817 MsG0580027086.01.T01:CDS 30.0%
TAAAAATGCCGATAGTTATG+AGG + Chr5:52916059-52916078 MsG0580027086.01.T01:three_prime_UTR 30.0%
TAACAAGGAACGTTAACTAA+TGG - Chr5:52914747-52914766 None:intergenic 30.0%
TATTTGTCATGATCTTTGCT+CGG + Chr5:52915985-52916004 MsG0580027086.01.T01:three_prime_UTR 30.0%
TTGTCATTGATCATCTAACA+AGG - Chr5:52914762-52914781 None:intergenic 30.0%
!! TACTGTTTTTCTAGCAGTAA+CGG + Chr5:52915830-52915849 MsG0580027086.01.T01:CDS 30.0%
AACAATGGCTACAATGTTCT+GGG + Chr5:52914925-52914944 MsG0580027086.01.T01:exon 35.0%
ACCATCAAATCATCTTCAAG+GGG + Chr5:52915776-52915795 MsG0580027086.01.T01:CDS 35.0%
ATCTTCAAGGGGGAAATATA+TGG + Chr5:52915787-52915806 MsG0580027086.01.T01:CDS 35.0%
ATTTGTCATGATCTTTGCTC+GGG + Chr5:52915986-52916005 MsG0580027086.01.T01:three_prime_UTR 35.0%
CACCATCAAATCATCTTCAA+GGG + Chr5:52915775-52915794 MsG0580027086.01.T01:CDS 35.0%
!! ACTGTTTTTCTAGCAGTAAC+GGG + Chr5:52915831-52915850 MsG0580027086.01.T01:CDS 35.0%
ACCAAATTAAGACTAGGTGC+TGG - Chr5:52915595-52915614 None:intergenic 40.0%
ATGGGTAGAAACGTATGTAG+TGG - Chr5:52914836-52914855 None:intergenic 40.0%
CAACAATGGCTACAATGTTC+TGG + Chr5:52914924-52914943 MsG0580027086.01.T01:exon 40.0%
CCATCAAATCATCTTCAAGG+GGG + Chr5:52915777-52915796 MsG0580027086.01.T01:CDS 40.0%
GATGTAACTGGAGCAGATTT+GGG - Chr5:52915124-52915143 None:intergenic 40.0%
GCACCATCAAATCATCTTCA+AGG + Chr5:52915774-52915793 MsG0580027086.01.T01:CDS 40.0%
GGCTATATGATCAAGCAGAT+GGG - Chr5:52914854-52914873 None:intergenic 40.0%
TCTTTGCTCGGGAACATTAA+TGG + Chr5:52915997-52916016 MsG0580027086.01.T01:three_prime_UTR 40.0%
TGATGTAACTGGAGCAGATT+TGG - Chr5:52915125-52915144 None:intergenic 40.0%
TGGCTATATGATCAAGCAGA+TGG - Chr5:52914855-52914874 None:intergenic 40.0%
! CTTGAAGCTGGTGCAATTTT+TGG - Chr5:52915154-52915173 None:intergenic 40.0%
! GTTGAGACAGGTGAACTTTT+TGG - Chr5:52915202-52915221 None:intergenic 40.0%
!! ACCAGCACCTAGTCTTAATT+TGG + Chr5:52915591-52915610 MsG0580027086.01.T01:CDS 40.0%
!! ATCTTTGGTGATGGTAACGT+TGG - Chr5:52915271-52915290 None:intergenic 40.0%
!! GAACTTTTTGGTGGTTGAGA+TGG - Chr5:52915190-52915209 None:intergenic 40.0%
!! TTTTTGGTGGTTGAGATGGT+GGG - Chr5:52915186-52915205 None:intergenic 40.0%
AACTTTGTTGGTGCAGTTGC+TGG - Chr5:52915001-52915020 None:intergenic 45.0%
AGGGGGACTCTTGTGAATAA+CGG - Chr5:52915527-52915546 None:intergenic 45.0%
CCCCCTTGAAGATGATTTGA+TGG - Chr5:52915780-52915799 None:intergenic 45.0%
GAATCTGCTGTAGTGTCAGT+TGG - Chr5:52915556-52915575 None:intergenic 45.0%
GGACTCTTGTGAATAACGGT+TGG - Chr5:52915523-52915542 None:intergenic 45.0%
GTGTCTTCTTCTCTTGTGCT+TGG - Chr5:52915461-52915480 None:intergenic 45.0%
GTTGGCGATATCTTTGGTGA+TGG - Chr5:52915280-52915299 None:intergenic 45.0%
GTTGTAGGTGGCAACTTTGT+TGG - Chr5:52915013-52915032 None:intergenic 45.0%
TCTTCTTCTCTTGTGCTTGG+AGG - Chr5:52915458-52915477 None:intergenic 45.0%
! AGGAGTTGGAGCTTGCTTTA+CGG - Chr5:52915365-52915384 None:intergenic 45.0%
! GAGACAGGTGAACTTTTTGG+TGG - Chr5:52915199-52915218 None:intergenic 45.0%
! TTGTGAATAACGGTTGGTGC+TGG - Chr5:52915517-52915536 None:intergenic 45.0%
! TTTGGAGCTGGTGATGTAAC+TGG - Chr5:52915136-52915155 None:intergenic 45.0%
!! ACTGGTGTTGGCGATATCTT+TGG - Chr5:52915286-52915305 None:intergenic 45.0%
!! CGTATGTAGTGGATCATCTG+TGG - Chr5:52914825-52914844 None:intergenic 45.0%
!! CTTTTTGGTGGTTGAGATGG+TGG - Chr5:52915187-52915206 None:intergenic 45.0%
!! TGTAGTGGATCATCTGTGGA+AGG - Chr5:52914821-52914840 None:intergenic 45.0%
!! TTTGGTGATGGTAACGTTGG+TGG - Chr5:52915268-52915287 None:intergenic 45.0%
AAGCCAACCACCTGTAACTG+TGG + Chr5:52915096-52915115 MsG0580027086.01.T01:CDS 50.0%
AGTGGATCATCTGTGGAAGG+AGG - Chr5:52914818-52914837 None:intergenic 50.0%
GAAGACACAGACACAAGCAC+AGG + Chr5:52915473-52915492 MsG0580027086.01.T01:CDS 50.0%
GGCAATGTTGGAGTTGAGAC+AGG - Chr5:52915214-52915233 None:intergenic 50.0%
GGTACAGGTGCTTCTATTGC+AGG - Chr5:52915424-52915443 None:intergenic 50.0%
GTGTTGCCTTTACTGGTGCA+GGG - Chr5:52915324-52915343 None:intergenic 50.0%
TCTGCTGTAGTGTCAGTTGG+TGG - Chr5:52915553-52915572 None:intergenic 50.0%
TGAATCCTAGCAGGCAACTG+AGG - Chr5:52914967-52914986 None:intergenic 50.0%
TGCACCAGTAAAGGCAACAC+CGG + Chr5:52915324-52915343 MsG0580027086.01.T01:CDS 50.0%
TGTTGCCTTTACTGGTGCAG+GGG - Chr5:52915323-52915342 None:intergenic 50.0%
! GATTTGGGTGCCACAGTTAC+AGG - Chr5:52915109-52915128 None:intergenic 50.0%
! GGAGTTGGAGCTTGCTTTAC+GGG - Chr5:52915364-52915383 None:intergenic 50.0%
! GGGACTTTTGGACTTGAAGC+TGG - Chr5:52915166-52915185 None:intergenic 50.0%
!! AACGTTGGTGGTGATGCAAC+TGG - Chr5:52915256-52915275 None:intergenic 50.0%
!! ACAGGTGGTTGGCTTGTGAT+GGG - Chr5:52915091-52915110 None:intergenic 50.0%
!! TACAGGTGGTTGGCTTGTGA+TGG - Chr5:52915092-52915111 None:intergenic 50.0%
!! TAGTGTCAGTTGGTGGTGCA+GGG - Chr5:52915546-52915565 None:intergenic 50.0%
!! TTAAGACTAGGTGCTGGTGC+CGG - Chr5:52915589-52915608 None:intergenic 50.0%
!! TTCTATTGCAGGCGTTGGTG+CGG - Chr5:52915413-52915432 None:intergenic 50.0%
!!! GCTGGTGCAATTTTTGGAGC+TGG - Chr5:52915148-52915167 None:intergenic 50.0%
!!! GGTTGAGATGGTGGGACTTT+TGG - Chr5:52915178-52915197 None:intergenic 50.0%
AGCAGATTCCGACACAGCAC+CGG + Chr5:52915567-52915586 MsG0580027086.01.T01:CDS 55.0%
CTAAGCCTCAGTTGCCTGCT+AGG + Chr5:52914959-52914978 MsG0580027086.01.T01:CDS 55.0%
CTCTTGTGCTTGGAGGACTC+AGG - Chr5:52915451-52915470 None:intergenic 55.0%
GATGGGAGGAGATGCTGCAA+CGG - Chr5:52915074-52915093 None:intergenic 55.0%
GGTGCTTCTATTGCAGGCGT+TGG - Chr5:52915418-52915437 None:intergenic 55.0%
GTGCCACAGTTACAGGTGGT+TGG - Chr5:52915102-52915121 None:intergenic 55.0%
TGGTGCAGTTGCTGGTGCTT+GGG - Chr5:52914993-52915012 None:intergenic 55.0%
TTGGTGCAGTTGCTGGTGCT+TGG - Chr5:52914994-52915013 None:intergenic 55.0%
! GGTGTTGCCTTTACTGGTGC+AGG - Chr5:52915325-52915344 None:intergenic 55.0%
! TTGGGTGCCACAGTTACAGG+TGG - Chr5:52915106-52915125 None:intergenic 55.0%
!! AGTGTCAGTTGGTGGTGCAG+GGG - Chr5:52915545-52915564 None:intergenic 55.0%
!! ATAACGGTTGGTGCTGGAGC+TGG - Chr5:52915511-52915530 None:intergenic 55.0%
!! CTTGGGCGTTGAATCCTAGC+AGG - Chr5:52914976-52914995 None:intergenic 55.0%
!! GGTGGTGTTTGGACTGGTGT+TGG - Chr5:52915298-52915317 None:intergenic 55.0%
!! GTAGTGTCAGTTGGTGGTGC+AGG - Chr5:52915547-52915566 None:intergenic 55.0%
!! GTTGGTGGTGATGCAACTGG+TGG - Chr5:52915253-52915272 None:intergenic 55.0%
!! TCTATTGCAGGCGTTGGTGC+GGG - Chr5:52915412-52915431 None:intergenic 55.0%
AACCCCGACGGCAACAACAC+CGG + Chr5:52915030-52915049 MsG0580027086.01.T01:CDS 60.0%
ACCAGCCCCTGCACCAGTAA+AGG + Chr5:52915315-52915334 MsG0580027086.01.T01:CDS 60.0%
GGAGGAGATGCTGCAACGGT+CGG - Chr5:52915070-52915089 None:intergenic 60.0%
GGAGTAGCAGGTGCAGGAGT+TGG - Chr5:52915379-52915398 None:intergenic 60.0%
GTCGGTGGTTGTGTCGTGAC+CGG - Chr5:52915052-52915071 None:intergenic 60.0%
GTTGCCACCTACAACCCCGA+CGG + Chr5:52915018-52915037 MsG0580027086.01.T01:CDS 60.0%
GTTGTTGCCGTCGGGGTTGT+AGG - Chr5:52915028-52915047 None:intergenic 60.0%
TGCTTGGAGGACTCAGGTGC+TGG - Chr5:52915445-52915464 None:intergenic 60.0%
TGCTTTACGGGTGCAGGTGC+TGG - Chr5:52915352-52915371 None:intergenic 60.0%
TTTACTGGTGCAGGGGCTGG+TGG - Chr5:52915316-52915335 None:intergenic 60.0%
! GGAGCTTGCTTTACGGGTGC+AGG - Chr5:52915358-52915377 None:intergenic 60.0%
! GGCAACGGTGGTGGCAATGT+TGG - Chr5:52915226-52915245 None:intergenic 60.0%
! GGTGGTGATGCAACTGGTGG+TGG - Chr5:52915250-52915269 None:intergenic 60.0%
!! GAGGACTCAGGTGCTGGTAC+AGG - Chr5:52915439-52915458 None:intergenic 60.0%
!! GCAACTGGTGGTGGTGGCAA+CGG - Chr5:52915241-52915260 None:intergenic 60.0%
!! GGCACCGGTGTTGCCTTTAC+TGG - Chr5:52915331-52915350 None:intergenic 60.0%
!! GGTATTGGTGGCGGAGTAGC+AGG - Chr5:52915391-52915410 None:intergenic 60.0%
!! GGTGATGCAACTGGTGGTGG+TGG - Chr5:52915247-52915266 None:intergenic 60.0%
!! GGTGGTTGGCTTGTGATGGG+AGG - Chr5:52915088-52915107 None:intergenic 60.0%
!! GTGACCGGTGTTGTTGCCGT+CGG - Chr5:52915037-52915056 None:intergenic 60.0%
!! GTGTCAGTTGGTGGTGCAGG+GGG - Chr5:52915544-52915563 None:intergenic 60.0%
!! GTTGGTGCGGGTATTGGTGG+CGG - Chr5:52915400-52915419 None:intergenic 60.0%
!! TGACCGGTGTTGTTGCCGTC+GGG - Chr5:52915036-52915055 None:intergenic 60.0%
GCCTTTACTGGTGCAGGGGC+TGG - Chr5:52915319-52915338 None:intergenic 65.0%
GGAGATGCTGCAACGGTCGG+TGG - Chr5:52915067-52915086 None:intergenic 65.0%
GTTGCCGTCGGGGTTGTAGG+TGG - Chr5:52915025-52915044 None:intergenic 65.0%
! GGGGCTGGTGGTGTTTGGAC+TGG - Chr5:52915304-52915323 None:intergenic 65.0%
! GTGCAGGGGCTGGTGGTGTT+TGG - Chr5:52915309-52915328 None:intergenic 65.0%
!! ACTGGTGGTGGTGGCAACGG+TGG - Chr5:52915238-52915257 None:intergenic 65.0%
!! GACCGGTGTTGTTGCCGTCG+GGG - Chr5:52915035-52915054 None:intergenic 65.0%
!! GCAGGCGTTGGTGCGGGTAT+TGG - Chr5:52915406-52915425 None:intergenic 65.0%
!! GGCGTTGGTGCGGGTATTGG+TGG - Chr5:52915403-52915422 None:intergenic 65.0%
!! TGCTGGTGCCGGTGCTGTGT+CGG - Chr5:52915578-52915597 None:intergenic 65.0%
!! ACGGGTGCAGGTGCTGGCAC+CGG - Chr5:52915346-52915365 None:intergenic 70.0%
!! GGTGGCGGAGTAGCAGGTGC+AGG - Chr5:52915385-52915404 None:intergenic 70.0%
!! GGTGGTGGTGGCAACGGTGG+TGG - Chr5:52915235-52915254 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
Chr5 gene 52914712 52916080 52914712 ID=MsG0580027086.01;Name=MsG0580027086.01
Chr5 mRNA 52914712 52916080 52914712 ID=MsG0580027086.01.T01;Parent=MsG0580027086.01;Name=MsG0580027086.01.T01;_AED=0.09;_eAED=0.09;_QI=217|1|1|1|0|0|2|214|260
Chr5 exon 52914712 52915612 52914712 ID=MsG0580027086.01.T01:exon:29242;Parent=MsG0580027086.01.T01
Chr5 exon 52915768 52916080 52915768 ID=MsG0580027086.01.T01:exon:29243;Parent=MsG0580027086.01.T01
Chr5 five_prime_UTR 52914712 52914928 52914712 ID=MsG0580027086.01.T01:five_prime_utr;Parent=MsG0580027086.01.T01
Chr5 CDS 52914929 52915612 52914929 ID=MsG0580027086.01.T01:cds;Parent=MsG0580027086.01.T01
Chr5 CDS 52915768 52915866 52915768 ID=MsG0580027086.01.T01:cds;Parent=MsG0580027086.01.T01
Chr5 three_prime_UTR 52915867 52916080 52915867 ID=MsG0580027086.01.T01:three_prime_utr;Parent=MsG0580027086.01.T01
Gene Sequence

>MsG0580027086.01.T01

ATGGCTACAATGTTCTGGGTTATGACTTTACTAAGCCTCAGTTGCCTGCTAGGATTCAACGCCCAAGCACCAGCAACTGCACCAACAAAGTTGCCACCTACAACCCCGACGGCAACAACACCGGTCACGACACAACCACCGACCGTTGCAGCATCTCCTCCCATCACAAGCCAACCACCTGTAACTGTGGCACCCAAATCTGCTCCAGTTACATCACCAGCTCCAAAAATTGCACCAGCTTCAAGTCCAAAAGTCCCACCATCTCAACCACCAAAAAGTTCACCTGTCTCAACTCCAACATTGCCACCACCGTTGCCACCACCACCAGTTGCATCACCACCAACGTTACCATCACCAAAGATATCGCCAACACCAGTCCAAACACCACCAGCCCCTGCACCAGTAAAGGCAACACCGGTGCCAGCACCTGCACCCGTAAAGCAAGCTCCAACTCCTGCACCTGCTACTCCGCCACCAATACCCGCACCAACGCCTGCAATAGAAGCACCTGTACCAGCACCTGAGTCCTCCAAGCACAAGAGAAGAAGACACAGACACAAGCACAGGAGACATCAAGCACCAGCTCCAGCACCAACCGTTATTCACAAGAGTCCCCCTGCACCACCAACTGACACTACAGCAGATTCCGACACAGCACCGGCACCAGCACCTAGTCTTAATTTGAATGGTGCACCATCAAATCATCTTCAAGGGGGAAATATATGGACAACAATTGGATTTGCTATTACTGTTTTTCTAGCAGTAACGGGCTACAGCTGCTAG
Protein sequence

>MsG0580027086.01.T01

MATMFWVMTLLSLSCLLGFNAQAPATAPTKLPPTTPTATTPVTTQPPTVAASPPITSQPPVTVAPKSAPVTSPAPKIAPASSPKVPPSQPPKSSPVSTPTLPPPLPPPPVASPPTLPSPKISPTPVQTPPAPAPVKATPVPAPAPVKQAPTPAPATPPPIPAPTPAIEAPVPAPESSKHKRRRHRHKHRRHQAPAPAPTVIHKSPPAPPTDTTADSDTAPAPAPSLNLNGAPSNHLQGGNIWTTIGFAITVFLAVTGYSC*