AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0580027252.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0580027252.01.T02 MTR_5g053430 86.842 114 14 1 42 155 1 113 4.70e-65 205
MsG0580027252.01.T02 MTR_5g053430 86.842 114 14 1 42 155 1 113 4.93e-65 205
MsG0580027252.01.T02 MTR_1g093680 68.468 111 32 2 45 155 6 113 1.20e-47 161
MsG0580027252.01.T02 MTR_1g093670 71.053 76 20 1 80 155 5 78 1.02e-32 119
MsG0580027252.01.T02 MTR_7g033320 68.254 63 20 0 93 155 48 110 9.45e-27 105
MsG0580027252.01.T02 MTR_8g069160 61.290 62 24 0 94 155 62 123 2.06e-20 85.1
MsG0580027252.01.T02 MTR_8g102240 63.934 61 21 1 96 155 43 103 2.91e-20 87.0
MsG0580027252.01.T02 MTR_8g102240 63.934 61 21 1 96 155 43 103 2.91e-20 87.0
MsG0580027252.01.T02 MTR_4g078875 59.677 62 25 0 94 155 42 103 4.96e-20 84.3
MsG0580027252.01.T02 MTR_4g088245 61.290 62 24 0 94 155 62 123 7.94e-20 84.3
MsG0580027252.01.T02 MTR_2g014680 48.864 88 44 1 69 155 21 108 4.17e-19 82.4
MsG0580027252.01.T02 MTR_2g090735 58.065 62 26 0 94 155 43 104 4.82e-18 79.3
MsG0580027252.01.T01 MTR_5g053430 97.024 168 5 0 1 168 275 442 3.21e-114 331
MsG0580027252.01.T01 MTR_5g053430 97.024 168 5 0 1 168 278 445 4.37e-114 331
MsG0580027252.01.T01 MTR_1g093680 46.193 197 72 7 4 167 285 480 2.60e-33 123
MsG0580027252.01.T01 MTR_1g093670 53.061 98 40 2 67 163 253 345 1.04e-21 90.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0580027252.01.T02 AT1G25580 60.000 110 43 1 46 155 5 113 6.87e-41 142
MsG0580027252.01.T02 AT3G01600 43.636 110 59 2 46 155 4 110 2.82e-22 91.7
MsG0580027252.01.T02 AT5G14490 60.317 63 25 0 93 155 48 110 7.10e-21 86.7
MsG0580027252.01.T02 AT5G14490 60.317 63 25 0 93 155 48 110 9.79e-21 87.4
MsG0580027252.01.T02 AT5G14490 60.317 63 25 0 93 155 51 113 1.01e-20 87.4
MsG0580027252.01.T02 AT5G14490 60.317 63 25 0 93 155 51 113 1.36e-20 87.0
MsG0580027252.01.T02 AT4G29230 62.295 61 23 0 95 155 43 103 1.88e-20 87.4
MsG0580027252.01.T02 AT4G29230 62.295 61 23 0 95 155 43 103 3.07e-20 87.0
MsG0580027252.01.T02 AT1G28470 59.677 62 25 0 94 155 71 132 4.39e-20 85.1
MsG0580027252.01.T02 AT4G29230 63.333 60 22 0 96 155 43 102 5.08e-20 86.3
MsG0580027252.01.T02 AT4G28500 39.823 113 65 2 46 155 2 114 2.77e-19 82.8
MsG0580027252.01.T02 AT5G56620 50.000 84 35 2 77 155 22 103 2.14e-18 81.3
MsG0580027252.01.T02 AT5G56620 50.000 84 35 2 77 155 22 103 2.39e-18 81.3
MsG0580027252.01.T02 AT5G56620 48.810 84 36 2 77 155 22 103 2.64e-18 80.9
MsG0580027252.01.T01 AT1G25580 46.951 164 76 4 4 166 295 448 6.94e-33 121

Find 118 sgRNAs with CRISPR-Local

Find 300 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAAATACATGATCAGGATTT+TGG 0.158079 5:+56999545 MsG0580027252.01.T01:five_prime_UTR
CTTCTTCCACAGAGCAATTA+AGG 0.224693 5:+56999493 MsG0580027252.01.T01:five_prime_UTR
GGATCAAATTTGACACCTTT+TGG 0.259342 5:-56999223 None:intergenic
TGCTTCTTTGTTTGACAACT+TGG 0.279960 5:+57001410 MsG0580027252.01.T01:three_prime_UTR
TGAACCCCATTCAAGATTAC+TGG 0.283602 5:-56999602 None:intergenic
GAAAAGCTGAGAAAACTAAT+TGG 0.286732 5:+56999675 MsG0580027252.01.T01:five_prime_UTR
CAAGATAGCTTTATAGCATT+TGG 0.294737 5:+57001281 MsG0580027252.01.T01:CDS
TTTGTGTTTATATAGGAATT+TGG 0.295109 5:+57001254 MsG0580027252.01.T01:intron
CATCTGATCAGGAGGTAATT+TGG 0.312766 5:+56999245 MsG0580027252.01.T01:five_prime_UTR
CCAACAGCAGCAAGTCAAAC+TGG 0.324794 5:+56999772 MsG0580027252.01.T01:five_prime_UTR
GGCTCGGGAGTCACAGATTT+GGG 0.327276 5:-56999863 None:intergenic
GTCAATAGTATGCTGACAAT+TGG 0.328525 5:-56997867 None:intergenic
ACATTTGACTCTACATTTGA+AGG 0.342814 5:-57001129 None:intergenic
GACGTCCGCTGGCACAAAAC+TGG 0.344109 5:+56999569 MsG0580027252.01.T01:five_prime_UTR
GAATACAGCCTTTCAGTATA+AGG 0.352096 5:-56999887 None:intergenic
CTCGTTATTGTTAAAATCTC+AGG 0.361933 5:+57001374 MsG0580027252.01.T01:three_prime_UTR
AACAAGGTAGTAAAGTAATA+TGG 0.369882 5:+57001308 MsG0580027252.01.T01:exon
TCTGTTGGATTCACAACAAC+TGG 0.369929 5:+57000942 MsG0580027252.01.T01:CDS
AGGCTCGGGAGTCACAGATT+TGG 0.370654 5:-56999864 None:intergenic
ATCTTGAATGGGGTTCAAAA+AGG 0.388213 5:+56999608 MsG0580027252.01.T01:five_prime_UTR
ATTGTTGCTTCAATAGCTTC+AGG 0.390657 5:-56999818 None:intergenic
TTAAGGTTTACCTGAGGAAT+GGG 0.392237 5:-56999937 None:intergenic
GCAATTAAGGCTTATAATAC+TGG 0.394443 5:+56999506 MsG0580027252.01.T01:five_prime_UTR
ATCATCAAGTCTCTCCTCTA+TGG 0.401552 5:+56997066 MsG0580027252.01.T01:five_prime_UTR
AGAAAGACACAGCGAGAAAG+AGG 0.401966 5:+56997001 MsG0580027252.01.T01:five_prime_UTR
CAAACAAAGAAGCAACAGTT+AGG 0.403441 5:-57001401 None:intergenic
CTGTATTCAGATGGAGATCT+AGG 0.406160 5:+56999902 MsG0580027252.01.T01:five_prime_UTR
TTTCTATATGCAGACCATCT+TGG 0.411265 5:+56997745 MsG0580027252.01.T01:intron
TTTGCTTGCTCTTCACAGTA+AGG 0.413709 5:-57000766 None:intergenic
GTTTCAACCGCTCAAGTTTG+TGG 0.419918 5:+57001601 MsG0580027252.01.T01:three_prime_UTR
ATATCCTTCTTCAGATGCTC+TGG 0.424976 5:-57001078 None:intergenic
TCATCTTTACCATCTCTAGT+AGG 0.429288 5:-57001009 None:intergenic
CTAAGCCAGTAATCTTGAAT+GGG 0.433717 5:+56999597 MsG0580027252.01.T01:five_prime_UTR
GTCACAGATTTGGGAGTAAC+CGG 0.439295 5:-56999854 None:intergenic
CAAATTTGATCCATCTGATC+AGG 0.442832 5:+56999234 MsG0580027252.01.T01:five_prime_UTR
CATAAATAGAAAGGCTTGGT+TGG 0.448580 5:-57001044 None:intergenic
AGGAACAGAAGAGGATGAAA+AGG 0.451744 5:+56999718 MsG0580027252.01.T01:five_prime_UTR
ACTAAGCCAGTAATCTTGAA+TGG 0.454048 5:+56999596 MsG0580027252.01.T01:five_prime_UTR
GCAAGTCAAACTGGGTGATA+AGG 0.457369 5:+56999781 MsG0580027252.01.T01:five_prime_UTR
TGCATCGGGAGCATGTGATC+TGG 0.461888 5:+56997806 MsG0580027252.01.T01:five_prime_UTR
AAAAGCTGAGAAAACTAATT+GGG 0.463490 5:+56999676 MsG0580027252.01.T01:five_prime_UTR
GCCTCCTCAGATGAATTGTC+TGG 0.464452 5:+57000732 MsG0580027252.01.T01:intron
GGAGTTTCGACTAAGTCAAT+TGG 0.465851 5:+57001170 MsG0580027252.01.T01:CDS
ATTACTCTTGAAGTGAATGA+TGG 0.470794 5:+56999331 MsG0580027252.01.T01:five_prime_UTR
TCAATAGTATGCTGACAATT+GGG 0.471818 5:-56997866 None:intergenic
TTAGATTATGTGTGTTGACT+AGG 0.477659 5:+56997685 MsG0580027252.01.T01:intron
GAGTGGCCTGGTTTGCCAAA+AGG 0.477697 5:+56999208 MsG0580027252.01.T01:five_prime_UTR
CTCAAAACTTGCCAGGTTGG+TGG 0.478362 5:+56999371 MsG0580027252.01.T01:intron
CTTTCTATTTATGCTCAGCT+AGG 0.482354 5:+57001054 MsG0580027252.01.T01:CDS
GCTTCTTTGTTTGACAACTT+GGG 0.482925 5:+57001411 MsG0580027252.01.T01:three_prime_UTR
TCAAGTCTCTCCTCTATGGC+GGG 0.485338 5:+56997070 MsG0580027252.01.T01:five_prime_UTR
TGAAGCAACAATCACTAAAG+TGG 0.486754 5:+56999829 MsG0580027252.01.T01:five_prime_UTR
AACAATCACTAAAGTGGATC+CGG 0.490246 5:+56999835 MsG0580027252.01.T01:five_prime_UTR
ACTCATCCTCAAAACTTGCC+AGG 0.498733 5:+56999364 MsG0580027252.01.T01:five_prime_UTR
CCTAAAATAACCTGAAAAGT+AGG 0.503404 5:+56997034 MsG0580027252.01.T01:five_prime_UTR
TAAGCTTCAATGAAAATGTC+AGG 0.507177 5:+56999444 MsG0580027252.01.T01:intron
GTTATGCATCAATATCATCT+AGG 0.507798 5:+56999698 MsG0580027252.01.T01:five_prime_UTR
ATCCTCAAAACTTGCCAGGT+TGG 0.513016 5:+56999368 MsG0580027252.01.T01:intron
CCTTTCAGTATAAGGAGGCT+CGG 0.514348 5:-56999879 None:intergenic
CCAGTTTGACTTGCTGCTGT+TGG 0.516424 5:-56999772 None:intergenic
CTAGCTGAGCATAAATAGAA+AGG 0.516504 5:-57001053 None:intergenic
TATATGCAGACCATCTTGGC+TGG 0.517331 5:+56997749 MsG0580027252.01.T01:intron
TTTAAGGTTTACCTGAGGAA+TGG 0.521231 5:-56999938 None:intergenic
ATGTCAGGTGTTAAGCAAGA+TGG 0.522325 5:+56999459 MsG0580027252.01.T01:intron
ATTGAAAATAATGCTGATGA+TGG 0.526709 5:+57000889 MsG0580027252.01.T01:CDS
GTTCTGTATATGAGTAGTGC+AGG 0.531845 5:+56999647 MsG0580027252.01.T01:five_prime_UTR
TTGCTTGCAAAATGTGGTGT+TGG 0.532555 5:+56999271 MsG0580027252.01.T01:five_prime_UTR
GTAGAAACTGAACATAATGA+AGG 0.537204 5:+57000805 MsG0580027252.01.T01:CDS
GCTGACAATTGGGCAAGCCT+TGG 0.537624 5:-56997856 None:intergenic
CTTTCAGTATAAGGAGGCTC+GGG 0.538356 5:-56999878 None:intergenic
TAGTGAATCACAAAATCTGT+TGG 0.540122 5:+57000927 MsG0580027252.01.T01:CDS
ACTCTACATTTGAAGGCTCA+AGG 0.543494 5:-57001122 None:intergenic
AATGAAAATAATGCTGATGA+TGG 0.544523 5:+57000838 MsG0580027252.01.T01:CDS
TACCATCTCTAGTAGGAGAC+TGG 0.544929 5:-57001002 None:intergenic
GTTGTAAGGTTGTAAAAGAG+TGG 0.556602 5:+56999191 MsG0580027252.01.T01:intron
CAAATTACCTCCTGATCAGA+TGG 0.556689 5:-56999244 None:intergenic
AACTCATCAACGAAAGGATG+AGG 0.560139 5:-56999304 None:intergenic
AGGACCAGAGCATCTGAAGA+AGG 0.560183 5:+57001074 MsG0580027252.01.T01:CDS
GAAAGACACAGCGAGAAAGA+GGG 0.561279 5:+56997002 MsG0580027252.01.T01:five_prime_UTR
ATCAAGTCTCTCCTCTATGG+CGG 0.563599 5:+56997069 MsG0580027252.01.T01:five_prime_UTR
ACAATTGGGCAAGCCTTGGT+AGG 0.566058 5:-56997852 None:intergenic
TAATTGCTCTGTGGAAGAAG+TGG 0.566899 5:-56999490 None:intergenic
ACTGAAAGGCTGTATTCAGA+TGG 0.567450 5:+56999893 MsG0580027252.01.T01:five_prime_UTR
TGAGCATAAATAGAAAGGCT+TGG 0.571858 5:-57001048 None:intergenic
TGTAGAGAATGACACACCTT+CGG 0.575337 5:+57001149 MsG0580027252.01.T01:CDS
AGCCAGTCTCCTACTAGAGA+TGG 0.577237 5:+57001000 MsG0580027252.01.T01:CDS
ATTATGTTCAGTTTCTACCA+TGG 0.577859 5:-57000800 None:intergenic
TAAGGTTTACCTGAGGAATG+GGG 0.586875 5:-56999936 None:intergenic
CAAGTCTCTCCTCTATGGCG+GGG 0.593225 5:+56997071 MsG0580027252.01.T01:five_prime_UTR
CCGAGCCTCCTTATACTGAA+AGG 0.594207 5:+56999879 MsG0580027252.01.T01:five_prime_UTR
TGTTACATACCCCGCCATAG+AGG 0.594691 5:-56997080 None:intergenic
AAGGTTGTAAAAGAGTGGCC+TGG 0.594766 5:+56999196 MsG0580027252.01.T01:intron
AGCAAAAGATGATCTATCCA+TGG 0.596236 5:+57000783 MsG0580027252.01.T01:CDS
TATTAAGTAAGAGATTCCTC+TGG 0.596308 5:-56997649 None:intergenic
ATGCAGACCATCTTGGCTGG+TGG 0.599205 5:+56997752 MsG0580027252.01.T01:intron
CAACAGCAGCAAGTCAAACT+GGG 0.602243 5:+56999773 MsG0580027252.01.T01:five_prime_UTR
AAGGTTTACCTGAGGAATGG+GGG 0.609301 5:-56999935 None:intergenic
TATATGAGTAGTGCAGGAGG+AGG 0.609676 5:+56999653 MsG0580027252.01.T01:five_prime_UTR
ATAATAAACTCATCAACGAA+AGG 0.610589 5:-56999310 None:intergenic
TAAAACGCAAGCCACCAACC+TGG 0.611949 5:-56999382 None:intergenic
TGGCACTTGCTTGCAAAATG+TGG 0.618127 5:+56999265 MsG0580027252.01.T01:five_prime_UTR
TAGAAACTGAACATAATGAA+GGG 0.620128 5:+57000806 MsG0580027252.01.T01:CDS
GTGATCTGGAAAATGTTACA+TGG 0.621927 5:+56997820 MsG0580027252.01.T01:five_prime_UTR
TCCTCAGATGAATTGTCTGG+AGG 0.625353 5:+57000735 MsG0580027252.01.T01:intron
ACAGAAGAGGATGAAAAGGA+TGG 0.629598 5:+56999722 MsG0580027252.01.T01:five_prime_UTR
AGAAATCTGCATCTCAGCTG+AGG 0.630405 5:-57001338 None:intergenic
ATTTGATCCATCTGATCAGG+AGG 0.636045 5:+56999237 MsG0580027252.01.T01:five_prime_UTR
ATATCATCTAGGAACAGAAG+AGG 0.646141 5:+56999709 MsG0580027252.01.T01:five_prime_UTR
ATCTTGTCCACAAACTTGAG+CGG 0.647963 5:-57001608 None:intergenic
TACAGCCTTTCAGTATAAGG+AGG 0.653106 5:-56999884 None:intergenic
ATGGAAAAGCAATCCTACCA+AGG 0.655385 5:+56997839 MsG0580027252.01.T01:five_prime_UTR
CTGTATATGAGTAGTGCAGG+AGG 0.660155 5:+56999650 MsG0580027252.01.T01:five_prime_UTR
CATCTATGCAGTAAGACCAG+AGG 0.662668 5:+56997633 MsG0580027252.01.T01:intron
AGGCTTATAATACTGGCACT+CGG 0.668317 5:+56999513 MsG0580027252.01.T01:five_prime_UTR
TATAAGCCTTAATTGCTCTG+TGG 0.669172 5:-56999499 None:intergenic
TAAGCCAGTAATCTTGAATG+GGG 0.669245 5:+56999598 MsG0580027252.01.T01:five_prime_UTR
TGACTTAGTCGAAACTCCGA+AGG 0.670660 5:-57001165 None:intergenic
TATAGCATTTGGTTACAACA+AGG 0.688806 5:+57001292 MsG0580027252.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AATTAATTTTTTTTTTTTTT+TGG + Chr5:56997315-56997334 MsG0580027252.01.T01:intron 0.0%
!!! ATTTGTTAAATTGTTATTTT+TGG + Chr5:56998689-56998708 MsG0580027252.01.T01:intron 10.0%
!! AAATTGTTCAATATTTGAAA+AGG - Chr5:56998673-56998692 None:intergenic 15.0%
!! AATATTAAAACCTAAACATT+TGG - Chr5:57000220-57000239 None:intergenic 15.0%
!! AATTGTTCAATATTTGAAAA+GGG - Chr5:56998672-56998691 None:intergenic 15.0%
!! TTAAAAACAAAAATCATTGT+TGG + Chr5:56996969-56996988 MsG0580027252.01.T01:five_prime_UTR 15.0%
!!! ATATTTGATAACAAGAAATA+TGG - Chr5:56999965-56999984 None:intergenic 15.0%
!!! TTTAAAATCTAAATACTTAG+TGG - Chr5:57000180-57000199 None:intergenic 15.0%
!!! TTTTTCCTGATTATTTTTTA+GGG + Chr5:56997932-56997951 MsG0580027252.01.T01:intron 15.0%
!! AAACAAGTGTATAAGAAAAT+GGG + Chr5:56998332-56998351 MsG0580027252.01.T01:intron 20.0%
!! AAAGCATATATCCTATAAAT+AGG + Chr5:56998061-56998080 MsG0580027252.01.T01:intron 20.0%
!! AATATTATTGAACGAATAGA+AGG - Chr5:56998168-56998187 None:intergenic 20.0%
!! ACATTTGGATAAAAACTAAA+TGG + Chr5:56997431-56997450 MsG0580027252.01.T01:intron 20.0%
!! ACATTTGTGTTTATTAATCA+AGG + Chr5:57000553-57000572 MsG0580027252.01.T01:intron 20.0%
!! AGTGAAGGAAATTATTATAT+AGG - Chr5:56998453-56998472 None:intergenic 20.0%
!! ATAAAAAATCATTGAGAACA+TGG - Chr5:57001201-57001220 None:intergenic 20.0%
!! ATATATCCTATAAATAGGAA+TGG + Chr5:56998066-56998085 MsG0580027252.01.T01:intron 20.0%
!! CATTTGGATAAAAACTAAAT+GGG + Chr5:56997432-56997451 MsG0580027252.01.T01:intron 20.0%
!! GTGAAGGAAATTATTATATA+GGG - Chr5:56998452-56998471 None:intergenic 20.0%
!! TAAAAAATCATTGAGAACAT+GGG - Chr5:57001200-57001219 None:intergenic 20.0%
!! TATATCCTATAAATAGGAAT+GGG + Chr5:56998067-56998086 MsG0580027252.01.T01:intron 20.0%
!! TCAACTATCAATATGATATA+TGG - Chr5:56999136-56999155 None:intergenic 20.0%
!! TTTGTGTTTATATAGGAATT+TGG + Chr5:57001254-57001273 MsG0580027252.01.T01:intron 20.0%
!!! ATGTGTTTTCTATGTTTAAA+TGG + Chr5:56997484-56997503 MsG0580027252.01.T01:intron 20.0%
!!! CAAGCATATTATCTTTTTTT+TGG + Chr5:57001493-57001512 MsG0580027252.01.T01:three_prime_UTR 20.0%
!!! CTTTTTCCTGATTATTTTTT+AGG + Chr5:56997931-56997950 MsG0580027252.01.T01:intron 20.0%
!!! TAAATCCTAAATCTGAAATA+TGG + Chr5:56997557-56997576 MsG0580027252.01.T01:intron 20.0%
!!! TAACAAGAAATATGGTTTTA+AGG - Chr5:56999957-56999976 None:intergenic 20.0%
!!! TGATAATGAAACATAGTTTA+AGG - Chr5:56997113-56997132 None:intergenic 20.0%
!!! TTGTTTTAACTTCATGAATT+TGG + Chr5:56997408-56997427 MsG0580027252.01.T01:intron 20.0%
! AAAAGCTGAGAAAACTAATT+GGG + Chr5:56999676-56999695 MsG0580027252.01.T01:five_prime_UTR 25.0%
! AAAAGGCTGTAAAAAGATTA+TGG + Chr5:56999625-56999644 MsG0580027252.01.T01:five_prime_UTR 25.0%
! AACAAGGTAGTAAAGTAATA+TGG + Chr5:57001308-57001327 MsG0580027252.01.T01:exon 25.0%
! AACAAGTGTATAAGAAAATG+GGG + Chr5:56998333-56998352 MsG0580027252.01.T01:intron 25.0%
! AAGAAACATTACTTCTGATA+TGG - Chr5:56998289-56998308 None:intergenic 25.0%
! AATCCATTGTAAGTTAGTTA+AGG + Chr5:56998010-56998029 MsG0580027252.01.T01:intron 25.0%
! AATCTAAATACTTAGTGGTT+TGG - Chr5:57000175-57000194 None:intergenic 25.0%
! AATGAAAATAATGCTGATGA+TGG + Chr5:57000838-57000857 MsG0580027252.01.T01:CDS 25.0%
! ATAATAAACTCATCAACGAA+AGG - Chr5:56999313-56999332 None:intergenic 25.0%
! ATAATAATTTCCTTCACTTC+TGG + Chr5:56998455-56998474 MsG0580027252.01.T01:intron 25.0%
! ATAGAACACAAAAATAGATC+AGG - Chr5:57000699-57000718 None:intergenic 25.0%
! ATATCCTATAAATAGGAATG+GGG + Chr5:56998068-56998087 MsG0580027252.01.T01:intron 25.0%
! ATCCATTGTAAGTTAGTTAA+GGG + Chr5:56998011-56998030 MsG0580027252.01.T01:intron 25.0%
! ATCTAATCCATTAATTCTGT+TGG + Chr5:56998207-56998226 MsG0580027252.01.T01:intron 25.0%
! ATCTATCAAGTACTAAACTA+TGG - Chr5:56997990-56998009 None:intergenic 25.0%
! ATGTACCCTAAAAAATAATC+AGG - Chr5:56997940-56997959 None:intergenic 25.0%
! ATTGAAAATAATGCTGATGA+TGG + Chr5:57000889-57000908 MsG0580027252.01.T01:CDS 25.0%
! GAAACAAGTGTATAAGAAAA+TGG + Chr5:56998331-56998350 MsG0580027252.01.T01:intron 25.0%
! GGATCAAAATAATCTTAAAC+TGG + Chr5:56998240-56998259 MsG0580027252.01.T01:intron 25.0%
! TAGAAACTGAACATAATGAA+GGG + Chr5:57000806-57000825 MsG0580027252.01.T01:CDS 25.0%
!! AAAATACATGATCAGGATTT+TGG + Chr5:56999545-56999564 MsG0580027252.01.T01:five_prime_UTR 25.0%
!! AACCAAAATAAAAAGTGCAT+CGG + Chr5:56997791-56997810 MsG0580027252.01.T01:five_prime_UTR 25.0%
!! AATCCTGATCATGTATTTTT+CGG - Chr5:56999544-56999563 None:intergenic 25.0%
!! ACGCATTTTTGTGTTTATAT+AGG + Chr5:57001247-57001266 MsG0580027252.01.T01:intron 25.0%
!! GGTATATTTTACTCTTAACA+TGG + Chr5:56998422-56998441 MsG0580027252.01.T01:intron 25.0%
!! TCTGATTTGATTTATGAGAT+GGG + Chr5:56997173-56997192 MsG0580027252.01.T01:intron 25.0%
!! TTCTGATTTGATTTATGAGA+TGG + Chr5:56997172-56997191 MsG0580027252.01.T01:intron 25.0%
!! TTTTTCTTCTTTCTGTTGTA+AGG + Chr5:56999177-56999196 MsG0580027252.01.T01:intron 25.0%
!!! CACTTCAAGCATTTTTTTTT+TGG + Chr5:57001552-57001571 MsG0580027252.01.T01:three_prime_UTR 25.0%
!!! TTTTTTAGGGTACATTGTTA+TGG + Chr5:56997945-56997964 MsG0580027252.01.T01:intron 25.0%
AAATGGTCTATCATTAGACT+TGG + Chr5:56998823-56998842 MsG0580027252.01.T01:intron 30.0%
AACCTAAACATTTGGTTGTT+TGG - Chr5:57000212-57000231 None:intergenic 30.0%
AATCTGTTGTTACATCAGTT+GGG + Chr5:56998920-56998939 MsG0580027252.01.T01:intron 30.0%
AATTCTGTTGGAAAAGGATA+GGG + Chr5:56998219-56998238 MsG0580027252.01.T01:intron 30.0%
ACAAGTGTATAAGAAAATGG+GGG + Chr5:56998334-56998353 MsG0580027252.01.T01:intron 30.0%
ACATTTGACTCTACATTTGA+AGG - Chr5:57001132-57001151 None:intergenic 30.0%
ACTTCATGAATTTGGACATT+TGG + Chr5:56997416-56997435 MsG0580027252.01.T01:intron 30.0%
AGGAATGGGGTTTATATTAA+GGG + Chr5:56998081-56998100 MsG0580027252.01.T01:intron 30.0%
ATTACTCTTGAAGTGAATGA+TGG + Chr5:56999331-56999350 MsG0580027252.01.T01:five_prime_UTR 30.0%
ATTATGTTCAGTTTCTACCA+TGG - Chr5:57000803-57000822 None:intergenic 30.0%
CAAGTCCATATTTCAGATTT+AGG - Chr5:56997565-56997584 None:intergenic 30.0%
CCTAAAATAACCTGAAAAGT+AGG + Chr5:56997034-56997053 MsG0580027252.01.T01:five_prime_UTR 30.0%
CTCGTTATTGTTAAAATCTC+AGG + Chr5:57001374-57001393 MsG0580027252.01.T01:three_prime_UTR 30.0%
CTGTCTTAAATGATGTCTAA+AGG - Chr5:57000245-57000264 None:intergenic 30.0%
CTTCAAAACTCTAACTAAAC+AGG - Chr5:56998762-56998781 None:intergenic 30.0%
GAAAAGCTGAGAAAACTAAT+TGG + Chr5:56999675-56999694 MsG0580027252.01.T01:five_prime_UTR 30.0%
GACTATTAAAGCCATATTTC+TGG - Chr5:57000488-57000507 None:intergenic 30.0%
GCAATTAAGGCTTATAATAC+TGG + Chr5:56999506-56999525 MsG0580027252.01.T01:five_prime_UTR 30.0%
GCAATTGATGAGATTAGAAT+CGG + Chr5:56998107-56998126 MsG0580027252.01.T01:intron 30.0%
GTAGAAACTGAACATAATGA+AGG + Chr5:57000805-57000824 MsG0580027252.01.T01:CDS 30.0%
GTTATGCATCAATATCATCT+AGG + Chr5:56999698-56999717 MsG0580027252.01.T01:five_prime_UTR 30.0%
TAAACCCCATTCCTATTTAT+AGG - Chr5:56998075-56998094 None:intergenic 30.0%
TAAGCTTCAATGAAAATGTC+AGG + Chr5:56999444-56999463 MsG0580027252.01.T01:intron 30.0%
TAATTCTGTTGGAAAAGGAT+AGG + Chr5:56998218-56998237 MsG0580027252.01.T01:intron 30.0%
TAGGAATGGGGTTTATATTA+AGG + Chr5:56998080-56998099 MsG0580027252.01.T01:intron 30.0%
TATAGCATTTGGTTACAACA+AGG + Chr5:57001292-57001311 MsG0580027252.01.T01:CDS 30.0%
TATTAAGTAAGAGATTCCTC+TGG - Chr5:56997652-56997671 None:intergenic 30.0%
TCAATAGTATGCTGACAATT+GGG - Chr5:56997869-56997888 None:intergenic 30.0%
TCCATTAATTCTGTTGGAAA+AGG + Chr5:56998213-56998232 MsG0580027252.01.T01:intron 30.0%
TCCATTGTAAGTTAGTTAAG+GGG + Chr5:56998012-56998031 MsG0580027252.01.T01:intron 30.0%
TTATGAGATCGTTTGAGAAA+AGG + Chr5:56998860-56998879 MsG0580027252.01.T01:intron 30.0%
! AAGTTAGTTAAGGGGTATAT+AGG + Chr5:56998020-56998039 MsG0580027252.01.T01:intron 30.0%
! ACCAAAATAAAAAGTGCATC+GGG + Chr5:56997792-56997811 MsG0580027252.01.T01:five_prime_UTR 30.0%
! CTTTAGACATCATTTAAGAC+AGG + Chr5:57000243-57000262 MsG0580027252.01.T01:intron 30.0%
! GATAATGCTCTTAGATTTTG+TGG + Chr5:56997584-56997603 MsG0580027252.01.T01:intron 30.0%
! TCCTTGGTTTAAAATTGACA+TGG + Chr5:56997378-56997397 MsG0580027252.01.T01:intron 30.0%
! TCCTTTTCCAACAGAATTAA+TGG - Chr5:56998217-56998236 None:intergenic 30.0%
!! CAAGATAGCTTTATAGCATT+TGG + Chr5:57001281-57001300 MsG0580027252.01.T01:CDS 30.0%
!! CTAACTTTGGATTTGCTATA+AGG + Chr5:57000604-57000623 MsG0580027252.01.T01:intron 30.0%
!! GTTTGTGTTTTTGTTCAAGT+TGG + Chr5:56997235-56997254 MsG0580027252.01.T01:intron 30.0%
!! TATTAAAGCCATATTTCTGG+AGG - Chr5:57000485-57000504 None:intergenic 30.0%
!! TCATTTAAGACAGGTTTTGA+TGG + Chr5:57000252-57000271 MsG0580027252.01.T01:intron 30.0%
!! TTAGATTATGTGTGTTGACT+AGG + Chr5:56997685-56997704 MsG0580027252.01.T01:intron 30.0%
!!! CCTACTTTTCAGGTTATTTT+AGG - Chr5:56997037-56997056 None:intergenic 30.0%
!!! TTGGTCAGTTTAGGTTTTTT+TGG + Chr5:56997254-56997273 MsG0580027252.01.T01:intron 30.0%
!!! TTTTTTCCTAAGACATTTGC+AGG - Chr5:56999034-56999053 None:intergenic 30.0%
AAACTAAAAAGATAGCAGCG+CGG - Chr5:56998729-56998748 None:intergenic 35.0%
AAAGTCAGAAATTAGAGACC+CGG + Chr5:56998392-56998411 MsG0580027252.01.T01:intron 35.0%
AACAATCACTAAAGTGGATC+CGG + Chr5:56999835-56999854 MsG0580027252.01.T01:five_prime_UTR 35.0%
AATATTTGAAAAGGGCCACA+TGG - Chr5:56998664-56998683 None:intergenic 35.0%
ACCCCTTAACTAACTTACAA+TGG - Chr5:56998016-56998035 None:intergenic 35.0%
ACTAAGCCAGTAATCTTGAA+TGG + Chr5:56999596-56999615 MsG0580027252.01.T01:five_prime_UTR 35.0%
ACTAAGTGTAACTAGTTCCT+TGG + Chr5:56997362-56997381 MsG0580027252.01.T01:intron 35.0%
ACTCTAACTAAACAGGTAGT+CGG - Chr5:56998755-56998774 None:intergenic 35.0%
AGCAAAAGATGATCTATCCA+TGG + Chr5:57000783-57000802 MsG0580027252.01.T01:CDS 35.0%
AGCACTCTTAAAGCCATTAA+GGG - Chr5:57000512-57000531 None:intergenic 35.0%
AGGGTACATTGTTATGGAAT+GGG + Chr5:56997951-56997970 MsG0580027252.01.T01:intron 35.0%
AGTTCATGGCAAGTCATAAT+AGG - Chr5:57000000-57000019 None:intergenic 35.0%
ATAAACATCGTGTCGTAAAC+CGG - Chr5:56997515-56997534 None:intergenic 35.0%
ATAGACCATTTGAATCCAGA+TGG - Chr5:56998814-56998833 None:intergenic 35.0%
ATATCATCTAGGAACAGAAG+AGG + Chr5:56999709-56999728 MsG0580027252.01.T01:five_prime_UTR 35.0%
ATCTTGAATGGGGTTCAAAA+AGG + Chr5:56999608-56999627 MsG0580027252.01.T01:five_prime_UTR 35.0%
ATGGGGTTTATATTAAGGGT+AGG + Chr5:56998085-56998104 MsG0580027252.01.T01:intron 35.0%
ATGGTCAAAAATGGTGTGAA+GGG + Chr5:57000857-57000876 MsG0580027252.01.T01:CDS 35.0%
CAAACAAAGAAGCAACAGTT+AGG - Chr5:57001404-57001423 None:intergenic 35.0%
CAAATTTGATCCATCTGATC+AGG + Chr5:56999234-56999253 MsG0580027252.01.T01:five_prime_UTR 35.0%
CAATCTGTTGTTACATCAGT+TGG + Chr5:56998919-56998938 MsG0580027252.01.T01:intron 35.0%
CTAAACATTTGGTTGTTTGG+CGG - Chr5:57000209-57000228 None:intergenic 35.0%
CTAAGCCAGTAATCTTGAAT+GGG + Chr5:56999597-56999616 MsG0580027252.01.T01:five_prime_UTR 35.0%
CTAGCTGAGCATAAATAGAA+AGG - Chr5:57001056-57001075 None:intergenic 35.0%
CTTTCTATTTATGCTCAGCT+AGG + Chr5:57001054-57001073 MsG0580027252.01.T01:CDS 35.0%
GAATACAGCCTTTCAGTATA+AGG - Chr5:56999890-56999909 None:intergenic 35.0%
GATCTCATAATGTCCTATGA+TGG - Chr5:56998850-56998869 None:intergenic 35.0%
GATTAGAATCGGAATAGTCT+TGG + Chr5:56998118-56998137 MsG0580027252.01.T01:intron 35.0%
GCTTTAATAGTCTCCCTTAA+TGG + Chr5:57000496-57000515 MsG0580027252.01.T01:intron 35.0%
GTCAATAGTATGCTGACAAT+TGG - Chr5:56997870-56997889 None:intergenic 35.0%
GTGATCTGGAAAATGTTACA+TGG + Chr5:56997820-56997839 MsG0580027252.01.T01:five_prime_UTR 35.0%
GTTGTAAGGTTGTAAAAGAG+TGG + Chr5:56999191-56999210 MsG0580027252.01.T01:intron 35.0%
TAAGCCAGTAATCTTGAATG+GGG + Chr5:56999598-56999617 MsG0580027252.01.T01:five_prime_UTR 35.0%
TAGCACTCTTAAAGCCATTA+AGG - Chr5:57000513-57000532 None:intergenic 35.0%
TAGGGTACATTGTTATGGAA+TGG + Chr5:56997950-56997969 MsG0580027252.01.T01:intron 35.0%
TATAAGCCTTAATTGCTCTG+TGG - Chr5:56999502-56999521 None:intergenic 35.0%
TCAAACCATCTGGATTCAAA+TGG + Chr5:56998806-56998825 MsG0580027252.01.T01:intron 35.0%
TCATCTTTACCATCTCTAGT+AGG - Chr5:57001012-57001031 None:intergenic 35.0%
TGAAGCAACAATCACTAAAG+TGG + Chr5:56999829-56999848 MsG0580027252.01.T01:five_prime_UTR 35.0%
TGAGCATAAATAGAAAGGCT+TGG - Chr5:57001051-57001070 None:intergenic 35.0%
TGTTAGACCTGTCATAGTAA+GGG + Chr5:56998628-56998647 MsG0580027252.01.T01:intron 35.0%
TTAAGGTTTACCTGAGGAAT+GGG - Chr5:56999940-56999959 None:intergenic 35.0%
TTAGTTCCTGCAAATGTCTT+AGG + Chr5:56999025-56999044 MsG0580027252.01.T01:intron 35.0%
TTTCTATATGCAGACCATCT+TGG + Chr5:56997745-56997764 MsG0580027252.01.T01:intron 35.0%
! ACAAAACCTTTTCTCACAAG+TGG - Chr5:57000290-57000309 None:intergenic 35.0%
! ACAACTTGGGCTGTAATTTT+TGG + Chr5:57001424-57001443 MsG0580027252.01.T01:three_prime_UTR 35.0%
! ATTCACTATCCCACCATTTT+TGG - Chr5:57000915-57000934 None:intergenic 35.0%
! ATTGTTGCTTCAATAGCTTC+AGG - Chr5:56999821-56999840 None:intergenic 35.0%
! CAAAACCTTTTCTCACAAGT+GGG - Chr5:57000289-57000308 None:intergenic 35.0%
! CATAAATAGAAAGGCTTGGT+TGG - Chr5:57001047-57001066 None:intergenic 35.0%
! GCCATGTCAATTTTAAACCA+AGG - Chr5:56997382-56997401 None:intergenic 35.0%
! GCTTCTTTGTTTGACAACTT+GGG + Chr5:57001411-57001430 MsG0580027252.01.T01:three_prime_UTR 35.0%
! GGATCAAATTTGACACCTTT+TGG - Chr5:56999226-56999245 None:intergenic 35.0%
! TGCTTCTTTGTTTGACAACT+TGG + Chr5:57001410-57001429 MsG0580027252.01.T01:three_prime_UTR 35.0%
! TGGTTTAAAATTGACATGGC+TGG + Chr5:56997382-56997401 MsG0580027252.01.T01:intron 35.0%
! TTAAGGGGTATATAGGTAGT+TGG + Chr5:56998027-56998046 MsG0580027252.01.T01:intron 35.0%
! TTTAAGGTTTACCTGAGGAA+TGG - Chr5:56999941-56999960 None:intergenic 35.0%
!! ATGCTGATGATGGTCAAAAA+TGG + Chr5:57000848-57000867 MsG0580027252.01.T01:CDS 35.0%
!! CTATGTTTAAATGGTGTTGC+CGG + Chr5:56997493-56997512 MsG0580027252.01.T01:intron 35.0%
!! TAGCACAAAACCTACTTTTC+AGG - Chr5:56997047-56997066 None:intergenic 35.0%
!! TCCCGATGCACTTTTTATTT+TGG - Chr5:56997796-56997815 None:intergenic 35.0%
!! TTGACATTTAGCTTGTGAGT+TGG - Chr5:56998954-56998973 None:intergenic 35.0%
!! TTGTTCAAGTTGGTCAGTTT+AGG + Chr5:56997245-56997264 MsG0580027252.01.T01:intron 35.0%
!!! ATGGTTTTAAGGTTTACCTG+AGG - Chr5:56999946-56999965 None:intergenic 35.0%
!!! CGCTGCTATCTTTTTAGTTT+AGG + Chr5:56998729-56998748 MsG0580027252.01.T01:intron 35.0%
!!! GTTTTGAAGCATGTACTAGA+CGG + Chr5:56998773-56998792 MsG0580027252.01.T01:intron 35.0%
AACTCATCAACGAAAGGATG+AGG - Chr5:56999307-56999326 None:intergenic 40.0%
AATAGAAGGACAAACATCCC+AGG - Chr5:56998154-56998173 None:intergenic 40.0%
ACACTACACACTAGAGTTCA+TGG - Chr5:57000014-57000033 None:intergenic 40.0%
ACAGAAGAGGATGAAAAGGA+TGG + Chr5:56999722-56999741 MsG0580027252.01.T01:five_prime_UTR 40.0%
ACTCTACATTTGAAGGCTCA+AGG - Chr5:57001125-57001144 None:intergenic 40.0%
ACTGAAAGGCTGTATTCAGA+TGG + Chr5:56999893-56999912 MsG0580027252.01.T01:five_prime_UTR 40.0%
AGATTGCAGGCTAAATAGGT+GGG - Chr5:56998905-56998924 None:intergenic 40.0%
AGGAACAGAAGAGGATGAAA+AGG + Chr5:56999718-56999737 MsG0580027252.01.T01:five_prime_UTR 40.0%
AGGCTTATAATACTGGCACT+CGG + Chr5:56999513-56999532 MsG0580027252.01.T01:five_prime_UTR 40.0%
ATAGAAGGACAAACATCCCA+GGG - Chr5:56998153-56998172 None:intergenic 40.0%
ATATCCTTCTTCAGATGCTC+TGG - Chr5:57001081-57001100 None:intergenic 40.0%
ATCATCAAGTCTCTCCTCTA+TGG + Chr5:56997066-56997085 MsG0580027252.01.T01:five_prime_UTR 40.0%
ATGGAAAAGCAATCCTACCA+AGG + Chr5:56997839-56997858 MsG0580027252.01.T01:five_prime_UTR 40.0%
ATGTCAGGTGTTAAGCAAGA+TGG + Chr5:56999459-56999478 MsG0580027252.01.T01:intron 40.0%
ATTTGATCCATCTGATCAGG+AGG + Chr5:56999237-56999256 MsG0580027252.01.T01:five_prime_UTR 40.0%
CAAATTACCTCCTGATCAGA+TGG - Chr5:56999247-56999266 None:intergenic 40.0%
CAACAGATTGCAGGCTAAAT+AGG - Chr5:56998909-56998928 None:intergenic 40.0%
CAGCACAACAATGATACTAG+AGG - Chr5:57000429-57000448 None:intergenic 40.0%
CATCTGATCAGGAGGTAATT+TGG + Chr5:56999245-56999264 MsG0580027252.01.T01:five_prime_UTR 40.0%
CATTCAACCAGCATGAAAGT+GGG + Chr5:56998363-56998382 MsG0580027252.01.T01:intron 40.0%
CGCCAAACAACCAAATGTTT+AGG + Chr5:57000207-57000226 MsG0580027252.01.T01:intron 40.0%
CTCTAGTATCATTGTTGTGC+TGG + Chr5:57000427-57000446 MsG0580027252.01.T01:intron 40.0%
CTGATGTAACAACAGATTGC+AGG - Chr5:56998918-56998937 None:intergenic 40.0%
CTGGGATTTGTAGACTAAGT+TGG + Chr5:56998544-56998563 MsG0580027252.01.T01:intron 40.0%
CTGTATTCAGATGGAGATCT+AGG + Chr5:56999902-56999921 MsG0580027252.01.T01:five_prime_UTR 40.0%
CTTAGTCTACAAATCCCAGT+AGG - Chr5:56998543-56998562 None:intergenic 40.0%
CTTCTTCCACAGAGCAATTA+AGG + Chr5:56999493-56999512 MsG0580027252.01.T01:five_prime_UTR 40.0%
CTTGGCTACACTTCTAACTT+TGG + Chr5:57000591-57000610 MsG0580027252.01.T01:intron 40.0%
GAACAAGATCATGAACTCGT+TGG + Chr5:56998574-56998593 MsG0580027252.01.T01:intron 40.0%
GAGTACTCAGCAGTAGAAAT+AGG + Chr5:57000069-57000088 MsG0580027252.01.T01:intron 40.0%
GATGGTCAAAAATGGTGTGA+AGG + Chr5:57000856-57000875 MsG0580027252.01.T01:CDS 40.0%
GGAGTTTCGACTAAGTCAAT+TGG + Chr5:57001170-57001189 MsG0580027252.01.T01:CDS 40.0%
GTAAAATATACCCCTGCTTC+CGG - Chr5:56998414-56998433 None:intergenic 40.0%
GTGTTAGACCTGTCATAGTA+AGG + Chr5:56998627-56998646 MsG0580027252.01.T01:intron 40.0%
GTTCACATCCTCCAGAAATA+TGG + Chr5:57000474-57000493 MsG0580027252.01.T01:intron 40.0%
GTTCTCATATTGTGCCTACT+GGG + Chr5:56998526-56998545 MsG0580027252.01.T01:intron 40.0%
GTTCTGTATATGAGTAGTGC+AGG + Chr5:56999647-56999666 MsG0580027252.01.T01:five_prime_UTR 40.0%
TAAAATATACCCCTGCTTCC+GGG - Chr5:56998413-56998432 None:intergenic 40.0%
TAAGGTTTACCTGAGGAATG+GGG - Chr5:56999939-56999958 None:intergenic 40.0%
TAATTGCTCTGTGGAAGAAG+TGG - Chr5:56999493-56999512 None:intergenic 40.0%
TACAGCCTTTCAGTATAAGG+AGG - Chr5:56999887-56999906 None:intergenic 40.0%
TCAAAGACCCTTACTATGAC+AGG - Chr5:56998638-56998657 None:intergenic 40.0%
TCATTCAACCAGCATGAAAG+TGG + Chr5:56998362-56998381 MsG0580027252.01.T01:intron 40.0%
TGAACCCCATTCAAGATTAC+TGG - Chr5:56999605-56999624 None:intergenic 40.0%
TGTAGAGAATGACACACCTT+CGG + Chr5:57001149-57001168 MsG0580027252.01.T01:CDS 40.0%
TGTTTCTTCACCAGAAGTGA+AGG - Chr5:56998468-56998487 None:intergenic 40.0%
TTAAGCCCACTTGTGAGAAA+AGG + Chr5:57000281-57000300 MsG0580027252.01.T01:intron 40.0%
TTCTAAACCCACTTTCATGC+TGG - Chr5:56998373-56998392 None:intergenic 40.0%
TTGCTTGCAAAATGTGGTGT+TGG + Chr5:56999271-56999290 MsG0580027252.01.T01:five_prime_UTR 40.0%
TTTGCTTGCTCTTCACAGTA+AGG - Chr5:57000769-57000788 None:intergenic 40.0%
! AAGTTAGAAGTGTAGCCAAG+TGG - Chr5:57000591-57000610 None:intergenic 40.0%
! CATTAGACTTGGTCCATCAT+AGG + Chr5:56998834-56998853 MsG0580027252.01.T01:intron 40.0%
!! ATGCTGATGATGGCCAAAAA+TGG + Chr5:57000899-57000918 MsG0580027252.01.T01:CDS 40.0%
!! TGATGATGGCCAAAAATGGT+GGG + Chr5:57000903-57000922 MsG0580027252.01.T01:CDS 40.0%
AAATTAGAGACCCGGAAGCA+GGG + Chr5:56998400-56998419 MsG0580027252.01.T01:intron 45.0%
AAGGTTGTAAAAGAGTGGCC+TGG + Chr5:56999196-56999215 MsG0580027252.01.T01:intron 45.0%
AAGGTTTACCTGAGGAATGG+GGG - Chr5:56999938-56999957 None:intergenic 45.0%
ACCTCTAGCTGCCTTAATTG+CGG + Chr5:57000378-57000397 MsG0580027252.01.T01:intron 45.0%
ACTCATCCTCAAAACTTGCC+AGG + Chr5:56999364-56999383 MsG0580027252.01.T01:five_prime_UTR 45.0%
AGAAAGACACAGCGAGAAAG+AGG + Chr5:56997001-56997020 MsG0580027252.01.T01:five_prime_UTR 45.0%
AGAAATCTGCATCTCAGCTG+AGG - Chr5:57001341-57001360 None:intergenic 45.0%
AGAGTACGTACATGCTAGGA+GGG - Chr5:57000330-57000349 None:intergenic 45.0%
AGGATAGAGGTCAAACCATC+TGG + Chr5:56998796-56998815 MsG0580027252.01.T01:intron 45.0%
ATCAAGTCTCTCCTCTATGG+CGG + Chr5:56997069-56997088 MsG0580027252.01.T01:five_prime_UTR 45.0%
ATCCTCAAAACTTGCCAGGT+TGG + Chr5:56999368-56999387 MsG0580027252.01.T01:intron 45.0%
ATGTACTAGACGGAGGATAG+AGG + Chr5:56998783-56998802 MsG0580027252.01.T01:intron 45.0%
CAACAGAGTACGTACATGCT+AGG - Chr5:57000334-57000353 None:intergenic 45.0%
CAACAGCAGCAAGTCAAACT+GGG + Chr5:56999773-56999792 MsG0580027252.01.T01:five_prime_UTR 45.0%
CAATTCATCTGAGGAGGCTT+CGG - Chr5:57000730-57000749 None:intergenic 45.0%
CAGATTGCAGGCTAAATAGG+TGG - Chr5:56998906-56998925 None:intergenic 45.0%
CATCTATGCAGTAAGACCAG+AGG + Chr5:56997633-56997652 MsG0580027252.01.T01:intron 45.0%
CCTTTCAGTATAAGGAGGCT+CGG - Chr5:56999882-56999901 None:intergenic 45.0%
CGTTCTCATATTGTGCCTAC+TGG + Chr5:56998525-56998544 MsG0580027252.01.T01:intron 45.0%
CTAGCATGTACGTACTCTGT+TGG + Chr5:57000332-57000351 MsG0580027252.01.T01:intron 45.0%
CTGTATATGAGTAGTGCAGG+AGG + Chr5:56999650-56999669 MsG0580027252.01.T01:five_prime_UTR 45.0%
CTTTCAGTATAAGGAGGCTC+GGG - Chr5:56999881-56999900 None:intergenic 45.0%
GAAAGACACAGCGAGAAAGA+GGG + Chr5:56997002-56997021 MsG0580027252.01.T01:five_prime_UTR 45.0%
GCAAGTCAAACTGGGTGATA+AGG + Chr5:56999781-56999800 MsG0580027252.01.T01:five_prime_UTR 45.0%
GCGCCGAAAAATACATGATC+AGG + Chr5:56999538-56999557 MsG0580027252.01.T01:five_prime_UTR 45.0%
GCTCAAAGATGCCGCAATTA+AGG - Chr5:57000392-57000411 None:intergenic 45.0%
GGTGAAGAAACACGCATGAA+TGG + Chr5:56998476-56998495 MsG0580027252.01.T01:intron 45.0%
GTCACAGATTTGGGAGTAAC+CGG - Chr5:56999857-56999876 None:intergenic 45.0%
GTTTCAACCGCTCAAGTTTG+TGG + Chr5:57001601-57001620 MsG0580027252.01.T01:three_prime_UTR 45.0%
TACCATCTCTAGTAGGAGAC+TGG - Chr5:57001005-57001024 None:intergenic 45.0%
TATATGAGTAGTGCAGGAGG+AGG + Chr5:56999653-56999672 MsG0580027252.01.T01:five_prime_UTR 45.0%
TATATGCAGACCATCTTGGC+TGG + Chr5:56997749-56997768 MsG0580027252.01.T01:intron 45.0%
TCCAGACAATTCATCTGAGG+AGG - Chr5:57000736-57000755 None:intergenic 45.0%
TCCTCAGATGAATTGTCTGG+AGG + Chr5:57000735-57000754 MsG0580027252.01.T01:intron 45.0%
TCCTCCAGACAATTCATCTG+AGG - Chr5:57000739-57000758 None:intergenic 45.0%
TGACTTAGTCGAAACTCCGA+AGG - Chr5:57001168-57001187 None:intergenic 45.0%
TGGCACTTGCTTGCAAAATG+TGG + Chr5:56999265-56999284 MsG0580027252.01.T01:five_prime_UTR 45.0%
TTGAAGCATGTACTAGACGG+AGG + Chr5:56998776-56998795 MsG0580027252.01.T01:intron 45.0%
! AGGAGTGTAACATAGCCACT+TGG + Chr5:57000573-57000592 MsG0580027252.01.T01:intron 45.0%
! TTGACACCTTTTGGCAAACC+AGG - Chr5:56999217-56999236 None:intergenic 45.0%
!! CTAGAGGTGGATTGAAACTC+AGG - Chr5:57000366-57000385 None:intergenic 45.0%
!! CTGATGATGGCCAAAAATGG+TGG + Chr5:57000902-57000921 MsG0580027252.01.T01:CDS 45.0%
!! TTCTTCCAGTTTTGTGCCAG+CGG - Chr5:56999577-56999596 None:intergenic 45.0%
AAGGGTCTTTGAGCACCATG+TGG + Chr5:56998646-56998665 MsG0580027252.01.T01:intron 50.0%
AATTAGAGACCCGGAAGCAG+GGG + Chr5:56998401-56998420 MsG0580027252.01.T01:intron 50.0%
ACAATTGGGCAAGCCTTGGT+AGG - Chr5:56997855-56997874 None:intergenic 50.0%
AGCCAGTCTCCTACTAGAGA+TGG + Chr5:57001000-57001019 MsG0580027252.01.T01:CDS 50.0%
CAGAGTACGTACATGCTAGG+AGG - Chr5:57000331-57000350 None:intergenic 50.0%
CCAACAGCAGCAAGTCAAAC+TGG + Chr5:56999772-56999791 MsG0580027252.01.T01:five_prime_UTR 50.0%
CCGAGCCTCCTTATACTGAA+AGG + Chr5:56999879-56999898 MsG0580027252.01.T01:five_prime_UTR 50.0%
GAAATTAGAGACCCGGAAGC+AGG + Chr5:56998399-56998418 MsG0580027252.01.T01:intron 50.0%
GCAATTAAGGCAGCTAGAGG+TGG - Chr5:57000379-57000398 None:intergenic 50.0%
GCCTCCTCAGATGAATTGTC+TGG + Chr5:57000732-57000751 MsG0580027252.01.T01:intron 50.0%
TAAAACGCAAGCCACCAACC+TGG - Chr5:56999385-56999404 None:intergenic 50.0%
TCAAGTCTCTCCTCTATGGC+GGG + Chr5:56997070-56997089 MsG0580027252.01.T01:five_prime_UTR 50.0%
TGTTACATACCCCGCCATAG+AGG - Chr5:56997083-56997102 None:intergenic 50.0%
! AGGACCAGAGCATCTGAAGA+AGG + Chr5:57001074-57001093 MsG0580027252.01.T01:CDS 50.0%
! CACCAACCTGGCAAGTTTTG+AGG - Chr5:56999373-56999392 None:intergenic 50.0%
! CTCAAAACTTGCCAGGTTGG+TGG + Chr5:56999371-56999390 MsG0580027252.01.T01:intron 50.0%
! CTTTTGTCCACCAGCCAAGA+TGG - Chr5:56997762-56997781 None:intergenic 50.0%
!! CCAGTTTGACTTGCTGCTGT+TGG - Chr5:56999775-56999794 None:intergenic 50.0%
AAGACACACCCCCATTCCTC+AGG + Chr5:56999927-56999946 MsG0580027252.01.T01:five_prime_UTR 55.0%
AGGCTCGGGAGTCACAGATT+TGG - Chr5:56999867-56999886 None:intergenic 55.0%
AGTCTTGGTCTCTCGATCCC+TGG + Chr5:56998133-56998152 MsG0580027252.01.T01:intron 55.0%
ATGCAGACCATCTTGGCTGG+TGG + Chr5:56997752-56997771 MsG0580027252.01.T01:intron 55.0%
CAAGTCTCTCCTCTATGGCG+GGG + Chr5:56997071-56997090 MsG0580027252.01.T01:five_prime_UTR 55.0%
GCCGCAATTAAGGCAGCTAG+AGG - Chr5:57000382-57000401 None:intergenic 55.0%
GCTGACAATTGGGCAAGCCT+TGG - Chr5:56997859-56997878 None:intergenic 55.0%
GGCTCGGGAGTCACAGATTT+GGG - Chr5:56999866-56999885 None:intergenic 55.0%
GTCTTGGTCTCTCGATCCCT+GGG + Chr5:56998134-56998153 MsG0580027252.01.T01:intron 55.0%
! GAGTGGCCTGGTTTGCCAAA+AGG + Chr5:56999208-56999227 MsG0580027252.01.T01:five_prime_UTR 55.0%
! TGCATCGGGAGCATGTGATC+TGG + Chr5:56997806-56997825 MsG0580027252.01.T01:five_prime_UTR 55.0%
!!! AGGATTTTGGTGACGTCCGC+TGG + Chr5:56999558-56999577 MsG0580027252.01.T01:five_prime_UTR 55.0%
GACGTCCGCTGGCACAAAAC+TGG + Chr5:56999569-56999588 MsG0580027252.01.T01:five_prime_UTR 60.0%
Chromosome Type Strat End Strand Name
Chr5 gene 56996944 57001623 56996944 ID=MsG0580027252.01;Name=MsG0580027252.01
Chr5 mRNA 56996944 57001623 56996944 ID=MsG0580027252.01.T01;Parent=MsG0580027252.01;Name=MsG0580027252.01.T01;_AED=0.23;_eAED=0.23;_QI=960|1|1|1|0.2|0.5|6|298|168
Chr5 exon 56996944 56997092 56996944 ID=MsG0580027252.01.T01:exon:42199;Parent=MsG0580027252.01.T01
Chr5 exon 56997758 56997898 56997758 ID=MsG0580027252.01.T01:exon:42200;Parent=MsG0580027252.01.T01
Chr5 exon 56999199 56999385 56999199 ID=MsG0580027252.01.T01:exon:42201;Parent=MsG0580027252.01.T01
Chr5 exon 56999466 56999948 56999466 ID=MsG0580027252.01.T01:exon:42202;Parent=MsG0580027252.01.T01
Chr5 exon 57000742 57001191 57000742 ID=MsG0580027252.01.T01:exon:42203;Parent=MsG0580027252.01.T01
Chr5 exon 57001269 57001623 57001269 ID=MsG0580027252.01.T01:exon:42204;Parent=MsG0580027252.01.T01
Chr5 five_prime_UTR 56996944 56997092 56996944 ID=MsG0580027252.01.T01:five_prime_utr;Parent=MsG0580027252.01.T01
Chr5 five_prime_UTR 56997758 56997898 56997758 ID=MsG0580027252.01.T01:five_prime_utr;Parent=MsG0580027252.01.T01
Chr5 five_prime_UTR 56999199 56999385 56999199 ID=MsG0580027252.01.T01:five_prime_utr;Parent=MsG0580027252.01.T01
Chr5 five_prime_UTR 56999466 56999948 56999466 ID=MsG0580027252.01.T01:five_prime_utr;Parent=MsG0580027252.01.T01
Chr5 CDS 57000742 57001191 57000742 ID=MsG0580027252.01.T01:cds;Parent=MsG0580027252.01.T01
Chr5 CDS 57001269 57001325 57001269 ID=MsG0580027252.01.T01:cds;Parent=MsG0580027252.01.T01
Chr5 three_prime_UTR 57001326 57001623 57001326 ID=MsG0580027252.01.T01:three_prime_utr;Parent=MsG0580027252.01.T01
Chr5 mRNA 56997627 56999948 56997627 ID=MsG0580027252.01.T02;Parent=MsG0580027252.01;Name=MsG0580027252.01.T02;_AED=0.42;_eAED=0.42;_QI=0|0|0|1|0|0.5|2|528|165
Chr5 exon 56997627 56997902 56997627 ID=MsG0580027252.01.T02:exon:42205;Parent=MsG0580027252.01.T02
Chr5 exon 56999199 56999948 56999199 ID=MsG0580027252.01.T02:exon:42206;Parent=MsG0580027252.01.T02
Chr5 CDS 56997627 56997902 56997627 ID=MsG0580027252.01.T02:cds;Parent=MsG0580027252.01.T02
Chr5 CDS 56999199 56999420 56999199 ID=MsG0580027252.01.T02:cds;Parent=MsG0580027252.01.T02
Chr5 three_prime_UTR 56999421 56999948 56999421 ID=MsG0580027252.01.T02:three_prime_utr;Parent=MsG0580027252.01.T02
Gene Sequence

>MsG0580027252.01.T02

ATAAATCATCTATGCAGTAAGACCAGAGGAATCTCTTACTTAATATTTGTTGATTCTCTTAGATTATGTGTGTTGACTAGGATTCTGAATGATAACAAACGTTTTACATTTTATTGCTTTTCTATATGCAGACCATCTTGGCTGGTGGACAAAAGCAGAATTGCAACCAAAATAAAAAGTGCATCGGGAGCATGTGATCTGGAAAATGTTACATGGAAAAGCAATCCTACCAAGGCTTGCCCAATTGTCAGCATACTATTGACAATAGTGATGTATGTTGTAAAAGAGTGGCCTGGTTTGCCAAAAGGTGTCAAATTTGATCCATCTGATCAGGAGGTAATTTGGCACTTGCTTGCAAAATGTGGTGTTGGAAATTCAAAACCTCATCCTTTCGTTGATGAGTTTATTATTACTCTTGAAGTGAATGATGGAATTTGTTACACTCATCCTCAAAACTTGCCAGGTTGGTGGCTTGCGTTTTACTCAGCTTTGAATTGA

>MsG0580027252.01.T01

ATGAATTGTCTGGAGGAAATTCAACCTTACTGTGAAGAGCAAGCAAAAGATGATCTATCCATGGTAGAAACTGAACATAATGAAGGGACAGATAATAATGAAAATAATGCTGATGATGGTCAAAAATGGTGTGAAGGGACAGATAATATTGAAAATAATGCTGATGATGGCCAAAAATGGTGGGATAGTGAATCACAAAATCTGTTGGATTCACAACAACTGGTTGACGCATTGTCATTGTGTGATGATTTACTTCGTAGCCAGTCTCCTACTAGAGATGGTAAAGATGAAGAACAAAAGAACCAACCAAGCCTTTCTATTTATGCTCAGCTAGGACCAGAGCATCTGAAGAAGGATATTGAAGACTGTCAAAATCTCGTCCTTGAGCCTTCAAATGTAGAGTCAAATGTAGAGAATGACACACCTTCGGAGTTTCGACTAAGTCAATTGGAATTTGGTTCACAAGATAGCTTTATAGCATTTGGTTACAACAAGGTAGTAAAGTAA
Protein sequence

>MsG0580027252.01.T02

INHLCSKTRGISYLIFVDSLRLCVLTRILNDNKRFTFYCFSICRPSWLVDKSRIATKIKSASGACDLENVTWKSNPTKACPIVSILLTIVMYVVKEWPGLPKGVKFDPSDQEVIWHLLAKCGVGNSKPHPFVDEFIITLEVNDGICYTHPQNLPGWWLAFYSALN*

>MsG0580027252.01.T01

MNCLEEIQPYCEEQAKDDLSMVETEHNEGTDNNENNADDGQKWCEGTDNIENNADDGQKWWDSESQNLLDSQQLVDALSLCDDLLRSQSPTRDGKDEEQKNQPSLSIYAQLGPEHLKKDIEDCQNLVLEPSNVESNVENDTPSEFRLSQLEFGSQDSFIAFGYNKVVK*