AlfalfaGEDB | MsG0580027463.01

M. sativa cultivar ZhongmuNo.1 / MsG0580027463.01

KEGG: -
GO: -
PFAM: PF10250

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0580027463.01.T01	XP_003614789.1	98.642	589	8	0	1	589	1	589	0	1216

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0580027463.01.T01	Q8GUM0	69.433	494	144	2	72	560	67	558	0	724

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0580027463.01.T01	G7K8X8	98.642	589	8	0	1	589	1	589	0.0	1216

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI

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Gene1	Gene2	Type
MsG0580027463.01	MsG0580025650.01	PPI
MsG0580027463.01	MsG0180005515.01	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0580027463.01.T01	MTR_5g059260	98.642	589	8	0	1	589	1	589	0.0	1216
MsG0580027463.01.T01	MTR_1g031590	55.307	537	214	6	26	559	33	546	0.0	600
MsG0580027463.01.T01	MTR_4g084570	57.143	497	195	4	68	559	64	547	0.0	599
MsG0580027463.01.T01	MTR_3g005340	55.227	507	209	5	72	569	57	554	0.0	568
MsG0580027463.01.T01	MTR_2g016470	39.073	453	238	10	139	561	172	616	4.07e-95	304
MsG0580027463.01.T01	MTR_5g032100	41.080	426	214	11	159	559	88	501	1.12e-94	299
MsG0580027463.01.T01	MTR_3g100310	40.141	426	218	10	159	559	102	515	1.67e-92	294
MsG0580027463.01.T01	MTR_3g086570	38.228	429	245	10	139	559	131	547	3.15e-92	294
MsG0580027463.01.T01	MTR_4g100810	44.318	352	180	6	158	509	109	444	1.16e-91	292
MsG0580027463.01.T01	MTR_5g064620	38.269	439	234	10	140	562	97	514	9.48e-90	287

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0580027463.01.T01	AT1G38131	69.433	494	144	2	72	560	67	558	0.0	724
MsG0580027463.01.T01	AT1G38065	72.131	427	114	1	139	560	3	429	0.0	658
MsG0580027463.01.T01	AT1G38065	74.690	403	102	0	158	560	37	439	0.0	655
MsG0580027463.01.T01	AT2G01480	52.260	553	233	7	24	557	9	549	0.0	587
MsG0580027463.01.T01	AT1G35510	54.898	541	205	10	46	559	28	556	0.0	577
MsG0580027463.01.T01	AT1G14970	52.834	547	236	5	24	559	17	552	0.0	574
MsG0580027463.01.T01	AT2G01480	53.204	515	215	6	24	519	9	516	0.0	559
MsG0580027463.01.T01	AT1G14970	58.810	437	170	2	123	559	6	432	0.0	544
MsG0580027463.01.T01	AT1G14970	60.934	407	154	1	153	559	5	406	0.0	532
MsG0580027463.01.T01	AT4G38390	42.708	384	204	6	141	523	107	475	1.79e-97	308

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Find 174 sgRNAs with CRISPR-Local

Find 522 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACCGGAGAGATAAACCAC+CGG	0.637048	5:-61434020	None:intergenic
AAAGGAAAGTTCAAAAGAAA+AGG	0.475308	5:+61437153	MsG0580027463.01.T01:CDS
AAAGGCAGAGAAGTTGGAAA+TGG	0.445978	5:+61437107	MsG0580027463.01.T01:CDS
AAATCAGTCAAATTCGAACA+AGG	0.661890	5:-61434677	None:intergenic
AACCAATAGGATAATGTGTT+TGG	0.315512	5:-61441761	None:intergenic
AACGGTTACGCGGCCGAGAA+TGG	0.483832	5:+61433831	MsG0580027463.01.T01:CDS
AACTCCAAGGTAATAACTGA+CGG	0.558076	5:-61436567	None:intergenic
AAGCAAATAAATACCTCTAG+GGG	0.612933	5:-61437228	None:intergenic
AAGTGACCGCAAAGGAATCA+TGG	0.542741	5:+61441156	MsG0580027463.01.T01:CDS
AAGTTGAAACACCAAAGCCA+TGG	0.619384	5:-61441392	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAAATAAAAAATCACGGGC+AGG	+	Chr5:61438188-61438207	MsG0580027463.01.T01:intron	30.0%
AAAACTACAAGTAACCAACT+GGG	-	Chr5:61439244-61439263	None:intergenic	30.0%
AAAATATTACCACATGTGGT+TGG	+	Chr5:61435532-61435551	MsG0580027463.01.T01:intron	30.0%
AAATATTACCACATGTGGTT+GGG	+	Chr5:61435533-61435552	MsG0580027463.01.T01:intron	30.0%
AAATCAGTCAAATTCGAACA+AGG	-	Chr5:61434680-61434699	None:intergenic	30.0%
AACCAATAGGATAATGTGTT+TGG	-	Chr5:61441764-61441783	None:intergenic	30.0%
AACTAATGAATTGGACTTAG+TGG	+	Chr5:61437792-61437811	MsG0580027463.01.T01:intron	30.0%
AAGACAACGAAAATGATGTA+TGG	-	Chr5:61438621-61438640	None:intergenic	30.0%
AAGCAAATAAATACCTCTAG+GGG	-	Chr5:61437231-61437250	None:intergenic	30.0%
AAGGAATGAAATGGGAATAA+TGG	+	Chr5:61435864-61435883	MsG0580027463.01.T01:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
Chr5	gene	61433807	61441960	61433807	ID=MsG0580027463.01;Name=MsG0580027463.01
Chr5	mRNA	61433807	61441960	61433807	ID=MsG0580027463.01.T01;Parent=MsG0580027463.01;Name=MsG0580027463.01.T01;_AED=0.37;_eAED=0.37;_QI=0\|0.44\|0.4\|1\|1\|1\|10\|621\|589
Chr5	exon	61433807	61434178	61433807	ID=MsG0580027463.01.T01:exon:22356;Parent=MsG0580027463.01.T01
Chr5	exon	61434632	61434716	61434632	ID=MsG0580027463.01.T01:exon:22357;Parent=MsG0580027463.01.T01
Chr5	exon	61435185	61435252	61435185	ID=MsG0580027463.01.T01:exon:22358;Parent=MsG0580027463.01.T01
Chr5	exon	61435350	61435438	61435350	ID=MsG0580027463.01.T01:exon:22359;Parent=MsG0580027463.01.T01
Chr5	exon	61436418	61436615	61436418	ID=MsG0580027463.01.T01:exon:22360;Parent=MsG0580027463.01.T01
Chr5	exon	61436767	61436971	61436767	ID=MsG0580027463.01.T01:exon:22361;Parent=MsG0580027463.01.T01
Chr5	exon	61437069	61437236	61437069	ID=MsG0580027463.01.T01:exon:22362;Parent=MsG0580027463.01.T01
Chr5	exon	61437551	61437718	61437551	ID=MsG0580027463.01.T01:exon:22363;Parent=MsG0580027463.01.T01
Chr5	exon	61438295	61438485	61438295	ID=MsG0580027463.01.T01:exon:22364;Parent=MsG0580027463.01.T01
Chr5	exon	61441114	61441960	61441114	ID=MsG0580027463.01.T01:exon:22365;Parent=MsG0580027463.01.T01
Chr5	CDS	61433807	61434178	61433807	ID=MsG0580027463.01.T01:cds;Parent=MsG0580027463.01.T01
Chr5	CDS	61434632	61434716	61434632	ID=MsG0580027463.01.T01:cds;Parent=MsG0580027463.01.T01
Chr5	CDS	61435185	61435252	61435185	ID=MsG0580027463.01.T01:cds;Parent=MsG0580027463.01.T01
Chr5	CDS	61435350	61435438	61435350	ID=MsG0580027463.01.T01:cds;Parent=MsG0580027463.01.T01
Chr5	CDS	61436418	61436615	61436418	ID=MsG0580027463.01.T01:cds;Parent=MsG0580027463.01.T01
Chr5	CDS	61436767	61436971	61436767	ID=MsG0580027463.01.T01:cds;Parent=MsG0580027463.01.T01
Chr5	CDS	61437069	61437236	61437069	ID=MsG0580027463.01.T01:cds;Parent=MsG0580027463.01.T01
Chr5	CDS	61437551	61437718	61437551	ID=MsG0580027463.01.T01:cds;Parent=MsG0580027463.01.T01
Chr5	CDS	61438295	61438485	61438295	ID=MsG0580027463.01.T01:cds;Parent=MsG0580027463.01.T01
Chr5	CDS	61441114	61441339	61441114	ID=MsG0580027463.01.T01:cds;Parent=MsG0580027463.01.T01
Chr5	three_prime_UTR	61441340	61441960	61441340	ID=MsG0580027463.01.T01:three_prime_utr;Parent=MsG0580027463.01.T01

Gene Sequence

>MsG0580027463.01.T01

ATGAAATCGAAGACACATAACGGAAACGGTTACGCGGCCGAGAATGGCGGTGGTGGAGGCGGTGGTGGAGGTGGAAGTAGTAGCTCACCGAGTCCACCGCGATCTCCACCGCGGCATTCCGGCGTATTACATTTACGGAAACGGTTACGGCGGACGAAGTCACTGTCGGCGGGGATAATGACACGGTGGAGTCTCCGCTACTTTTTTCTTCTTCCGGTGGTTTATCTCTCCGGTTTGTTGATGTGTGTGGGACCGTTTCCGTTCACGTTCTTCATTGGTCATACTCCTCTTCCTGGTTCTCGTTACCGGAGTCACGAGGTTTTCGATCATCTTTGGCCTGAAATTGATTCTGATAATTCCTCTTTCATTGAGTTGTCTTCAGTGTGGAAATACAAAAGGAAGTTGAGAGAGAAGAAGCCTTGTTCGAATTTGACTGATTTGCATCATGAACATTTTGTGTCCCCTGGCCTGAATGGTTTTTTGATTGTCGAGGCCAATGGTGGTCTTAACCAGCAACGCTCTGCGATTTGTAATGCTGTGGCTGTTGCTGGACTCCTGAATGCAATTCTAGTTATACCTCATTTTGAATTTCACAATGTGTGGAAAGATCCAAGTGAATTTGGGGATATATATGATGAAGATCATTTTATATCCACACTTGATGGTTATGTGAAGGTGGTTAAAGAACTTCCCGAGGCAATAATGGAGAGACATAATTACAATATGACTAATATAACTAGCATCAGAGTTGAAGCTTGGGCTCCCGTCAGTTATTACCTTGGAGTTGTTCATCCTATCTTGCAAAAGGAAGGGGTTATTCGAATAGCTCCATTTGCTAATCGTTTGGCAATGAGTGTCCCTCCGCATATACAATTTCTAAGATGTCTTACTAATTATCAAGCATTGAGGTTTTCTTCTTCAATATCTGCACTAGCTGAGAATCTGGTTTATCGAATGAGTGAGAAGAGCTCGAGGACAGATGGAAAATATATTGCTGTGCATCTTCGCTTTGAGGAGGACATGATAGCATTCTCCTGTTGTGTATATGATGGAGGAAAGGCAGAGAAGTTGGAAATGGATTCAGCTCGTGAAAAGGGGTGGAAAGGAAAGTTCAAAAGAAAAGGTCGTATCGTTGTACCTGACCTCTATCGAGTCAATGGAAAATGCCCACTAACTCCCCTAGAGGTTGGGATGATGCTACGTGGCATGGGATTCAATAACAATACATCAATATATTTAGCTTCTGGGAAAATATATCATGCAGAAAAGTATTTGGCTCCTTTGATAAAGATGTTTCCCAATCTTTATACCAAGGAGTCTCTTGCAACACCTGATGAGCTTGCTCCTTTTATGGGTTATTCCTCCCAATTGGCAGCATTGGACTACACAGTGTGCTTGTATAGTGAGGTTTTTGTTACAACCCAAGGGGGTAACTTCCCTCATTTTCTAATGGGCCATAGAAGATTTCTCTATGGTGGGCATGCCAAAACCATTATTCCTGATAAACGCAAACTTGTTGTTCTTTTCGAGAACACGACTATCAGTTGGAGTGCTCTCAAGGACCAGATGGATGACATGCTTAGTGAAAGTGACCGCAAAGGAATCATGGTCCCTAGAGTTAGAAAAATTAACAGAAAAACTTCTGTCTACACTTACCCTTTACCAGAATGTAGATGCCTACAGGAGAGTCTTGTCAATAAAACAATTGACCACAATGTAGACATTCCTGATAACTACAGTCTACAGCAGAACAAAAGCTTAAACAGATGA

Protein sequence

>MsG0580027463.01.T01

MKSKTHNGNGYAAENGGGGGGGGGGSSSSPSPPRSPPRHSGVLHLRKRLRRTKSLSAGIMTRWSLRYFFLLPVVYLSGLLMCVGPFPFTFFIGHTPLPGSRYRSHEVFDHLWPEIDSDNSSFIELSSVWKYKRKLREKKPCSNLTDLHHEHFVSPGLNGFLIVEANGGLNQQRSAICNAVAVAGLLNAILVIPHFEFHNVWKDPSEFGDIYDEDHFISTLDGYVKVVKELPEAIMERHNYNMTNITSIRVEAWAPVSYYLGVVHPILQKEGVIRIAPFANRLAMSVPPHIQFLRCLTNYQALRFSSSISALAENLVYRMSEKSSRTDGKYIAVHLRFEEDMIAFSCCVYDGGKAEKLEMDSAREKGWKGKFKRKGRIVVPDLYRVNGKCPLTPLEVGMMLRGMGFNNNTSIYLASGKIYHAEKYLAPLIKMFPNLYTKESLATPDELAPFMGYSSQLAALDYTVCLYSEVFVTTQGGNFPHFLMGHRRFLYGGHAKTIIPDKRKLVVLFENTTISWSALKDQMDDMLSESDRKGIMVPRVRKINRKTSVYTYPLPECRCLQESLVNKTIDHNVDIPDNYSLQQNKSLNR*