AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0580027929.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0580027929.01.T01 MTR_5g065580 79.600 250 14 4 1 236 1 227 2.72e-138 387
MsG0580027929.01.T01 MTR_5g065580 82.635 167 12 2 1 153 1 164 8.89e-96 278
MsG0580027929.01.T01 MTR_5g032660 51.837 245 79 4 6 231 2 226 1.36e-83 249
MsG0580027929.01.T01 MTR_7g087570 48.947 190 83 1 11 186 7 196 1.12e-63 199
MsG0580027929.01.T01 MTR_6g037260 82.895 76 10 1 1 76 1 73 2.66e-40 134
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0580027929.01.T01 AT4G24380 55.285 246 77 2 5 236 4 230 4.54e-97 283
MsG0580027929.01.T01 AT4G24380 49.817 273 77 2 5 236 4 257 5.97e-93 274
MsG0580027929.01.T01 AT4G24380 63.030 165 47 1 3 153 2 166 1.20e-75 226
MsG0580027929.01.T01 AT5G65400 50.410 244 82 4 11 235 28 251 7.37e-73 222
MsG0580027929.01.T01 AT5G65400 50.410 244 82 4 11 235 46 269 1.85e-72 222
MsG0580027929.01.T01 AT4G24380 71.429 112 32 0 3 114 2 113 2.63e-60 186
MsG0580027929.01.T01 AT4G24380 72.897 107 29 0 3 109 2 108 5.99e-59 183
MsG0580027929.01.T01 AT4G24380 46.857 175 60 2 76 236 53 208 7.46e-49 160
MsG0580027929.01.T01 AT1G09280 27.650 217 114 8 9 184 350 564 3.41e-14 71.6

Find 44 sgRNAs with CRISPR-Local

Find 231 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTGGTACAGTGTGTCCTTT+TGG 0.255612 5:-71269255 None:intergenic
TTGCCCCTCCTATTATTATA+AGG 0.258599 5:-71268465 None:intergenic
GTGAAATTCCTTATAATAAT+AGG 0.268426 5:+71268457 MsG0580027929.01.T01:CDS
GGACCGTTTGATGGTCTTCT+TGG 0.283927 5:+71265923 MsG0580027929.01.T01:CDS
CCAAGATTTATGTGTCTTCA+TGG 0.291824 5:+71265579 MsG0580027929.01.T01:CDS
TAATAGGAGGGGCAAAGTTC+AGG 0.313761 5:+71268473 MsG0580027929.01.T01:CDS
CTCCTTATTATGAGTGGTTC+GGG 0.359841 5:+71265739 MsG0580027929.01.T01:CDS
CCTCCTTATTATGAGTGGTT+CGG 0.369390 5:+71265738 MsG0580027929.01.T01:CDS
TACCCGAACCACTCATAATA+AGG 0.388373 5:-71265741 None:intergenic
CCATGAAGACACATAAATCT+TGG 0.393495 5:-71265579 None:intergenic
ATTATAAGGAATTTCACTTT+GGG 0.410361 5:-71268451 None:intergenic
ATCAAACATGGACCGTTTGA+TGG 0.413598 5:+71265914 MsG0580027929.01.T01:CDS
TATTATAAGGAATTTCACTT+TGG 0.427378 5:-71268452 None:intergenic
ACAGCAGATTTGCCCTTACA+AGG 0.470231 5:-71265699 None:intergenic
GGACACACTGTACCAAGATT+AGG 0.480578 5:+71269261 MsG0580027929.01.T01:CDS
AATAGGAGGGGCAAAGTTCA+GGG 0.486880 5:+71268474 MsG0580027929.01.T01:CDS
CAAGATTTATGTGTCTTCAT+GGG 0.487719 5:+71265580 MsG0580027929.01.T01:CDS
TGGTCTTCTTGGATTCTCAC+AGG 0.488533 5:+71265934 MsG0580027929.01.T01:CDS
ATTAGTAGCACACCTAATCT+TGG 0.492125 5:-71269273 None:intergenic
GATTTGCCCTTACAAGGAAA+AGG 0.497499 5:-71265693 None:intergenic
AAGGGCAAATCTGCTGTTGA+AGG 0.498184 5:+71265705 MsG0580027929.01.T01:CDS
TCTTTCTATGAAACTCATCA+TGG 0.528093 5:-71269449 None:intergenic
CACTTTGGGAACTTTCGTGA+GGG 0.529638 5:-71268437 None:intergenic
TCGACCCTCCTTATTATGAG+TGG 0.538420 5:+71265733 MsG0580027929.01.T01:CDS
GTGGTAATTCATCACCCAAA+AGG 0.539105 5:+71269240 MsG0580027929.01.T01:CDS
TATTATATCTGAAAATAAAG+AGG 0.545461 5:+71269483 MsG0580027929.01.T01:CDS
TTTGGGTGATGAATTACCAC+AGG 0.551356 5:-71269237 None:intergenic
AAAGTTCAGGGCACCTTCAG+TGG 0.556647 5:+71268486 MsG0580027929.01.T01:CDS
CTTCATGGGTTTCGAACAAG+TGG 0.558594 5:+71265594 MsG0580027929.01.T01:CDS
ATTCCTTATAATAATAGGAG+GGG 0.578464 5:+71268462 MsG0580027929.01.T01:CDS
TATGCTTTCTCTACCACTGA+AGG 0.584580 5:-71268499 None:intergenic
AAATTCCTTATAATAATAGG+AGG 0.592167 5:+71268460 MsG0580027929.01.T01:CDS
TGGAAAACGAAGAGAAGAAG+AGG 0.605903 5:+71265544 MsG0580027929.01.T01:CDS
TCACTTTGGGAACTTTCGTG+AGG 0.611704 5:-71268438 None:intergenic
AATCCAAGAAGACCATCAAA+CGG 0.617555 5:-71265926 None:intergenic
AATTCCTTATAATAATAGGA+GGG 0.618651 5:+71268461 MsG0580027929.01.T01:CDS
CCGAACCACTCATAATAAGG+AGG 0.630666 5:-71265738 None:intergenic
TACCTAGAAAATGAAGAGAG+TGG 0.639422 5:-71268540 None:intergenic
CGAACCACTCATAATAAGGA+GGG 0.642917 5:-71265737 None:intergenic
AGATAATTGTGTTGAACCTG+TGG 0.656624 5:+71269221 MsG0580027929.01.T01:CDS
GAGGATTACATGATCAAACA+TGG 0.657463 5:+71265902 MsG0580027929.01.T01:CDS
TGAGTGTCTGCAATATATTG+AGG 0.665567 5:+71265883 MsG0580027929.01.T01:CDS
AAACGAAGAGAAGAAGAGGA+CGG 0.702636 5:+71265548 MsG0580027929.01.T01:CDS
TGAGTGGTTCGGGTACAACG+AGG 0.765548 5:+71265749 MsG0580027929.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTTATTTAATTTTTTAT+AGG + Chr5:71266829-71266848 MsG0580027929.01.T01:intron 0.0%
!! TAACTGATTATTATTTATAA+AGG + Chr5:71268615-71268634 MsG0580027929.01.T01:intron 10.0%
!! TTAGATTAAAAAAATGAATT+AGG - Chr5:71265975-71265994 None:intergenic 10.0%
!!! ATCTTTCTTTTTAAAAAATA+AGG - Chr5:71266489-71266508 None:intergenic 10.0%
!! AAAATTATTGAACTTATCTT+CGG - Chr5:71268039-71268058 None:intergenic 15.0%
!! AATAAAAAAAATTACACATG+TGG + Chr5:71267139-71267158 MsG0580027929.01.T01:intron 15.0%
!! ACCATTAAATTCTTATTAAT+AGG - Chr5:71267593-71267612 None:intergenic 15.0%
!! ATTAATAAGAATTTAATGGT+GGG + Chr5:71267593-71267612 MsG0580027929.01.T01:intron 15.0%
!! ATTATAAATTCACAAACAAA+TGG - Chr5:71268354-71268373 None:intergenic 15.0%
!! TAAATACATTGAAAATTGAA+AGG - Chr5:71268580-71268599 None:intergenic 15.0%
!! TAAATTTAAACCTAAAACAA+CGG + Chr5:71266416-71266435 MsG0580027929.01.T01:intron 15.0%
!! TAATATTGAAAGAAAATTTG+AGG + Chr5:71266065-71266084 MsG0580027929.01.T01:intron 15.0%
!! TATTAATAAGAATTTAATGG+TGG + Chr5:71267592-71267611 MsG0580027929.01.T01:intron 15.0%
!! TATTATATCTGAAAATAAAG+AGG + Chr5:71269483-71269502 MsG0580027929.01.T01:CDS 15.0%
!!! AAAATCGAATTATTTTAGTT+AGG - Chr5:71266906-71266925 None:intergenic 15.0%
!!! AAATCGAATTATTTTAGTTA+GGG - Chr5:71266905-71266924 None:intergenic 15.0%
!!! AATGATAAGAGTTTTTTTTA+TGG - Chr5:71268007-71268026 None:intergenic 15.0%
!!! GAGTAAATTTGTTATAAAAA+AGG - Chr5:71267314-71267333 None:intergenic 15.0%
!!! TAACTAAAATAATTCGATTT+TGG + Chr5:71266905-71266924 MsG0580027929.01.T01:intron 15.0%
!!! TAATTTTCTTTGTAAAATCA+TGG - Chr5:71268794-71268813 None:intergenic 15.0%
!!! TATGTTTTAAGTATTGTTTA+AGG + Chr5:71266518-71266537 MsG0580027929.01.T01:intron 15.0%
!!! TGTTTGATTTGATTTATAAT+TGG + Chr5:71266102-71266121 MsG0580027929.01.T01:intron 15.0%
!!! TTTTTATTTTTATCTCTAGA+TGG + Chr5:71266315-71266334 MsG0580027929.01.T01:intron 15.0%
!! AAAGCATATTCTTCAAAAAT+TGG + Chr5:71268514-71268533 MsG0580027929.01.T01:CDS 20.0%
!! AAATAACAAAATTACACATG+TGG - Chr5:71266989-71267008 None:intergenic 20.0%
!! AAATTCCTTATAATAATAGG+AGG + Chr5:71268460-71268479 MsG0580027929.01.T01:CDS 20.0%
!! AAATTTAAACCTAAAACAAC+GGG + Chr5:71266417-71266436 MsG0580027929.01.T01:intron 20.0%
!! AACACACAAAGTAAATATAA+GGG + Chr5:71266541-71266560 MsG0580027929.01.T01:intron 20.0%
!! AATTCCTTATAATAATAGGA+GGG + Chr5:71268461-71268480 MsG0580027929.01.T01:CDS 20.0%
!! ACCCTTAAATTCTTATTAAA+AGG - Chr5:71267477-71267496 None:intergenic 20.0%
!! AGTGTATAAAACTAAAAGAT+AGG - Chr5:71267336-71267355 None:intergenic 20.0%
!! ATGTAAAAAACTGAAAACTT+GGG + Chr5:71266217-71266236 MsG0580027929.01.T01:intron 20.0%
!! ATTATAAGGAATTTCACTTT+GGG - Chr5:71268454-71268473 None:intergenic 20.0%
!! CTTAACATAAATGATAAAGA+TGG - Chr5:71267437-71267456 None:intergenic 20.0%
!! GATTTATAATTGGTACTATA+AGG + Chr5:71266112-71266131 MsG0580027929.01.T01:intron 20.0%
!! GCCTATTAATAAGAATTTAA+TGG + Chr5:71267589-71267608 MsG0580027929.01.T01:intron 20.0%
!! GTGAAATTCCTTATAATAAT+AGG + Chr5:71268457-71268476 MsG0580027929.01.T01:CDS 20.0%
!! GTGTAGAAATTAAACTAAAA+TGG + Chr5:71268310-71268329 MsG0580027929.01.T01:intron 20.0%
!! TAAAAAAACTATACCTAGTT+GGG - Chr5:71268981-71269000 None:intergenic 20.0%
!! TATGTAAAAAACTGAAAACT+TGG + Chr5:71266216-71266235 MsG0580027929.01.T01:intron 20.0%
!! TATTATAAGGAATTTCACTT+TGG - Chr5:71268455-71268474 None:intergenic 20.0%
!! TATTTCGACTATCTTAAAAA+TGG + Chr5:71268382-71268401 MsG0580027929.01.T01:intron 20.0%
!! TCTTATCATCTGAAAAATAA+AGG - Chr5:71269420-71269439 None:intergenic 20.0%
!! TGAAATCATTCTACATTATA+TGG + Chr5:71268948-71268967 MsG0580027929.01.T01:intron 20.0%
!! TGTTTGAATTTGACAAAATA+GGG + Chr5:71266152-71266171 MsG0580027929.01.T01:intron 20.0%
!! TTAATAAGAATTTAATGGTG+GGG + Chr5:71267594-71267613 MsG0580027929.01.T01:intron 20.0%
!! TTATGTTATGTATATGTGTA+GGG + Chr5:71268409-71268428 MsG0580027929.01.T01:intron 20.0%
!! TTTAATAAGAATTTAAGGGT+GGG + Chr5:71267477-71267496 MsG0580027929.01.T01:intron 20.0%
!! TTTATGTTATGTATATGTGT+AGG + Chr5:71268408-71268427 MsG0580027929.01.T01:intron 20.0%
!!! AAAATCGAATTATTTTAGCT+TGG + Chr5:71267237-71267256 MsG0580027929.01.T01:intron 20.0%
!!! AAATCGAATTATTTTAGCTT+GGG + Chr5:71267238-71267257 MsG0580027929.01.T01:intron 20.0%
!!! AAGCTAAAATAATTCGATTT+TGG - Chr5:71267238-71267257 None:intergenic 20.0%
!!! AATAAGGTATCATTAAGTTA+TGG - Chr5:71266473-71266492 None:intergenic 20.0%
!!! AATCGAATTATTTTAGTTAG+GGG - Chr5:71266904-71266923 None:intergenic 20.0%
!!! ACTAATAAGTTTGAAATGTT+TGG - Chr5:71267745-71267764 None:intergenic 20.0%
!!! AGCCTTTTAATAAGAATTTA+AGG + Chr5:71267472-71267491 MsG0580027929.01.T01:intron 20.0%
!!! ATAAGCACAAATTTCTTTTA+AGG - Chr5:71269156-71269175 None:intergenic 20.0%
!!! ATTGATTAAACAACCATTTT+TGG - Chr5:71269389-71269408 None:intergenic 20.0%
!!! GCCTTTTAATAAGAATTTAA+GGG + Chr5:71267473-71267492 MsG0580027929.01.T01:intron 20.0%
!!! TATAGTTTTTTTACAAGAAG+CGG + Chr5:71268988-71269007 MsG0580027929.01.T01:intron 20.0%
!!! TTGATTAAACAACCATTTTT+GGG - Chr5:71269388-71269407 None:intergenic 20.0%
!!! TTTTAATAAGAATTTAAGGG+TGG + Chr5:71267476-71267495 MsG0580027929.01.T01:intron 20.0%
! AGTAAATATAAGGGACTATT+TGG + Chr5:71266550-71266569 MsG0580027929.01.T01:intron 25.0%
! ATAACATAGCATAAATGATG+TGG - Chr5:71267559-71267578 None:intergenic 25.0%
! ATTCCTTATAATAATAGGAG+GGG + Chr5:71268462-71268481 MsG0580027929.01.T01:CDS 25.0%
! ATTGTGACATAGATGAAAAA+GGG - Chr5:71269077-71269096 None:intergenic 25.0%
! CAAATTACAAGCTTATCAAT+TGG + Chr5:71266698-71266717 MsG0580027929.01.T01:intron 25.0%
! CTTATATCTATCAAAGTCAT+AGG + Chr5:71268685-71268704 MsG0580027929.01.T01:intron 25.0%
! GAACACACAAAGTAAATATA+AGG + Chr5:71266540-71266559 MsG0580027929.01.T01:intron 25.0%
! GACATTTATATGTACATAAG+AGG + Chr5:71268253-71268272 MsG0580027929.01.T01:intron 25.0%
! GTAAAAAAACTATACCTAGT+TGG - Chr5:71268982-71269001 None:intergenic 25.0%
! GTATAAGTTGTTTATCCAAA+CGG + Chr5:71267852-71267871 MsG0580027929.01.T01:intron 25.0%
! GTGTTTGAATTTGACAAAAT+AGG + Chr5:71266151-71266170 MsG0580027929.01.T01:intron 25.0%
! GTTTGAATTTGACAAAATAG+GGG + Chr5:71266153-71266172 MsG0580027929.01.T01:intron 25.0%
! TATAAGTTGTTTATCCAAAC+GGG + Chr5:71267853-71267872 MsG0580027929.01.T01:intron 25.0%
! TATTGTGACATAGATGAAAA+AGG - Chr5:71269078-71269097 None:intergenic 25.0%
! TCACAAAAGTTGTTAGAAAA+TGG + Chr5:71268886-71268905 MsG0580027929.01.T01:intron 25.0%
! TGAAAAAACAGATACATAAG+TGG + Chr5:71265625-71265644 MsG0580027929.01.T01:CDS 25.0%
! TTAATCATTTCTCCCAAAAA+TGG + Chr5:71269373-71269392 MsG0580027929.01.T01:intron 25.0%
! TTTGAATTTGACAAAATAGG+GGG + Chr5:71266154-71266173 MsG0580027929.01.T01:intron 25.0%
!! GTTTATATGTTTCTAATGAG+TGG + Chr5:71269312-71269331 MsG0580027929.01.T01:intron 25.0%
!! TCTAAACTTTTAATAGCTTC+TGG + Chr5:71266023-71266042 MsG0580027929.01.T01:intron 25.0%
!!! AATCGAATTATTTTAGCTTG+GGG + Chr5:71267239-71267258 MsG0580027929.01.T01:intron 25.0%
!!! ATCGAATTATTTTAGTTAGG+GGG - Chr5:71266903-71266922 None:intergenic 25.0%
!!! TTTTTTTTATGGACTGACAT+CGG - Chr5:71267996-71268015 None:intergenic 25.0%
AAGAAATTTGTGCTTATTGC+AGG + Chr5:71269159-71269178 MsG0580027929.01.T01:intron 30.0%
ACATTGAAAATTGAAAGGAG+AGG - Chr5:71268575-71268594 None:intergenic 30.0%
ACCATTCAGAACATTAGTAA+TGG + Chr5:71267648-71267667 MsG0580027929.01.T01:intron 30.0%
AGAAAATTTGAGGATCATTG+TGG + Chr5:71266075-71266094 MsG0580027929.01.T01:intron 30.0%
AGATATAAGACTAAACACGA+TGG - Chr5:71268674-71268693 None:intergenic 30.0%
AGCTTCTGGATTCATAATTA+AGG + Chr5:71266037-71266056 MsG0580027929.01.T01:intron 30.0%
ATAAGATTGGTGAAATTGCT+AGG + Chr5:71268276-71268295 MsG0580027929.01.T01:intron 30.0%
ATATAAGGGACTATTTGGAT+TGG + Chr5:71266555-71266574 MsG0580027929.01.T01:intron 30.0%
ATGAATTAGGAAGCTAATGA+AGG - Chr5:71265962-71265981 None:intergenic 30.0%
ATTGCGTAAATAATGACAGA+AGG + Chr5:71267941-71267960 MsG0580027929.01.T01:intron 30.0%
CAAGATTTATGTGTCTTCAT+GGG + Chr5:71265580-71265599 MsG0580027929.01.T01:CDS 30.0%
CTTAAGCAGTTTGTGAAATT+AGG - Chr5:71266661-71266680 None:intergenic 30.0%
GGAGTAAAATTGTGTCAAAT+TGG - Chr5:71266782-71266801 None:intergenic 30.0%
TAAAATCATGGTTGTCAATG+TGG - Chr5:71268782-71268801 None:intergenic 30.0%
TAAGATTGGTGAAATTGCTA+GGG + Chr5:71268277-71268296 MsG0580027929.01.T01:intron 30.0%
TCTTTCTATGAAACTCATCA+TGG - Chr5:71269452-71269471 None:intergenic 30.0%
TGTACATAAGAGGATAAGAT+TGG + Chr5:71268263-71268282 MsG0580027929.01.T01:intron 30.0%
TTGCGTAAATAATGACAGAA+GGG + Chr5:71267942-71267961 MsG0580027929.01.T01:intron 30.0%
! AAAAGGCTTAATAGCAGTTT+TGG - Chr5:71267297-71267316 None:intergenic 30.0%
! ACCATTACTAATGTTCTGAA+TGG - Chr5:71267652-71267671 None:intergenic 30.0%
! CTCAATAAGCTTTTTACGTT+TGG - Chr5:71267776-71267795 None:intergenic 30.0%
! TATAGGCTTAATAGCAGTTT+TGG + Chr5:71266846-71266865 MsG0580027929.01.T01:intron 30.0%
! TTTGTCATGTGTTTGACTTA+GGG - Chr5:71267879-71267898 None:intergenic 30.0%
!! AAGCTTTCCTAAAAGTGTTT+GGG + Chr5:71266613-71266632 MsG0580027929.01.T01:intron 30.0%
!! TAAGCTTTCCTAAAAGTGTT+TGG + Chr5:71266612-71266631 MsG0580027929.01.T01:intron 30.0%
!! TTTTGTCATGTGTTTGACTT+AGG - Chr5:71267880-71267899 None:intergenic 30.0%
!!! ATATGGTTTTTTTCCCAACT+AGG + Chr5:71268965-71268984 MsG0580027929.01.T01:intron 30.0%
!!! ATCGAATTATTTTAGCTTGG+GGG + Chr5:71267240-71267259 MsG0580027929.01.T01:intron 30.0%
!!! CATGATTTTTTGAAGGAGTA+TGG + Chr5:71269186-71269205 MsG0580027929.01.T01:CDS 30.0%
!!! CTCTGCTAAGTTTTTTTTAG+AGG + Chr5:71267363-71267382 MsG0580027929.01.T01:intron 30.0%
AATCCAAGAAGACCATCAAA+CGG - Chr5:71265929-71265948 None:intergenic 35.0%
AATTGGAAAAGTAACACCAC+CGG - Chr5:71266765-71266784 None:intergenic 35.0%
ACATCTTAATACCCCTACTT+AGG - Chr5:71268129-71268148 None:intergenic 35.0%
AGAAGATGAGTGTGCTAAAA+AGG - Chr5:71266804-71266823 None:intergenic 35.0%
AGATAATTGTGTTGAACCTG+TGG + Chr5:71269221-71269240 MsG0580027929.01.T01:CDS 35.0%
ATAACTAGAGTAGTCGAGTT+TGG + Chr5:71268087-71268106 MsG0580027929.01.T01:intron 35.0%
ATCGCAACTTCTGTAAACAT+AGG + Chr5:71267268-71267287 MsG0580027929.01.T01:intron 35.0%
ATTAGTAGCACACCTAATCT+TGG - Chr5:71269276-71269295 None:intergenic 35.0%
CAACTTTCTCTTTCATACTC+AGG - Chr5:71268866-71268885 None:intergenic 35.0%
CCAAGATTTATGTGTCTTCA+TGG + Chr5:71265579-71265598 MsG0580027929.01.T01:CDS 35.0%
CCATGAAGACACATAAATCT+TGG - Chr5:71265582-71265601 None:intergenic 35.0%
CGCAACTTCTGTAAACATAA+GGG - Chr5:71266873-71266892 None:intergenic 35.0%
CTATAAGGATCTGAATCTGA+TGG + Chr5:71266127-71266146 MsG0580027929.01.T01:intron 35.0%
GAAGATGAGTGTGCTAAAAA+GGG - Chr5:71266803-71266822 None:intergenic 35.0%
GAGGATTACATGATCAAACA+TGG + Chr5:71265902-71265921 MsG0580027929.01.T01:CDS 35.0%
TACCTAGAAAATGAAGAGAG+TGG - Chr5:71268543-71268562 None:intergenic 35.0%
TCGCAACTTCTGTAAACATA+AGG - Chr5:71267288-71267269 None:intergenic 35.0%
TGAGTGTCTGCAATATATTG+AGG + Chr5:71265883-71265902 MsG0580027929.01.T01:CDS 35.0%
TTATGTATATGTGTAGGGTG+TGG + Chr5:71268414-71268433 MsG0580027929.01.T01:intron 35.0%
TTGCCCCTCCTATTATTATA+AGG - Chr5:71268468-71268487 None:intergenic 35.0%
! AAATGTCCCCAAACACTTTT+AGG - Chr5:71266623-71266642 None:intergenic 35.0%
! ACTTGGTCAAAATTGGTCTA+GGG + Chr5:71267178-71267197 MsG0580027929.01.T01:intron 35.0%
! CTTATCAATTGGCTTAACAC+GGG + Chr5:71266709-71266728 MsG0580027929.01.T01:intron 35.0%
! GCTTATCAATTGGCTTAACA+CGG + Chr5:71266708-71266727 MsG0580027929.01.T01:intron 35.0%
! GTTTACAGAAGTTGCGATTT+TGG + Chr5:71266877-71266896 MsG0580027929.01.T01:intron 35.0%
! GTTTACAGAAGTTGCGATTT+TGG - Chr5:71266896-71266877 None:intergenic 35.0%
!! AAGTAGGGGTATTAAGATGT+TGG + Chr5:71268129-71268148 MsG0580027929.01.T01:intron 35.0%
!! AGCATTGACTTGGTCAAAAT+TGG + Chr5:71267171-71267190 MsG0580027929.01.T01:intron 35.0%
!! AGCTTTCCTAAAAGTGTTTG+GGG + Chr5:71266614-71266633 MsG0580027929.01.T01:intron 35.0%
!! AGTTTGTCTAGAACGTTTTG+TGG - Chr5:71265651-71265670 None:intergenic 35.0%
!!! AGGAGAGCATGATTTTTTGA+AGG + Chr5:71269179-71269198 MsG0580027929.01.T01:intron 35.0%
AAACGAAGAGAAGAAGAGGA+CGG + Chr5:71265548-71265567 MsG0580027929.01.T01:CDS 40.0%
AAATAGGGGGCGATATTATC+AGG + Chr5:71266167-71266186 MsG0580027929.01.T01:intron 40.0%
ACAAGCTTGTGACCTAAGTA+GGG + Chr5:71268114-71268133 MsG0580027929.01.T01:intron 40.0%
ACTTTCTCTCTCTACTGCTT+TGG - Chr5:71268833-71268852 None:intergenic 40.0%
AGCGGAACATAAACATGAGT+TGG + Chr5:71269006-71269025 MsG0580027929.01.T01:intron 40.0%
AGTAATCTATTCGATTCCCC+CGG + Chr5:71266743-71266762 MsG0580027929.01.T01:intron 40.0%
ATCAAACATGGACCGTTTGA+TGG + Chr5:71265914-71265933 MsG0580027929.01.T01:CDS 40.0%
ATTGGAAAAGTAACACCACC+GGG - Chr5:71266764-71266783 None:intergenic 40.0%
CCTCCTTATTATGAGTGGTT+CGG + Chr5:71265738-71265757 MsG0580027929.01.T01:CDS 40.0%
CGAACCACTCATAATAAGGA+GGG - Chr5:71265740-71265759 None:intergenic 40.0%
CTCCTTATTATGAGTGGTTC+GGG + Chr5:71265739-71265758 MsG0580027929.01.T01:CDS 40.0%
GATTTGCCCTTACAAGGAAA+AGG - Chr5:71265696-71265715 None:intergenic 40.0%
GCAACTTCTGTAAACATAGG+AGG + Chr5:71267271-71267290 MsG0580027929.01.T01:intron 40.0%
GCGGAACATAAACATGAGTT+GGG + Chr5:71269007-71269026 MsG0580027929.01.T01:intron 40.0%
GTGGTAATTCATCACCCAAA+AGG + Chr5:71269240-71269259 MsG0580027929.01.T01:CDS 40.0%
TACCCGAACCACTCATAATA+AGG - Chr5:71265744-71265763 None:intergenic 40.0%
TATGCTTTCTCTACCACTGA+AGG - Chr5:71268502-71268521 None:intergenic 40.0%
TGGAAAACGAAGAGAAGAAG+AGG + Chr5:71265544-71265563 MsG0580027929.01.T01:CDS 40.0%
TTTGGGTGATGAATTACCAC+AGG - Chr5:71269240-71269259 None:intergenic 40.0%
! CTTGGTCAAAATTGGTCTAG+GGG + Chr5:71267179-71267198 MsG0580027929.01.T01:intron 40.0%
! GACTTGGTCAAAATTGGTCT+AGG + Chr5:71267177-71267196 MsG0580027929.01.T01:intron 40.0%
! GATGCTCCTTTTCCTTGTAA+GGG + Chr5:71265687-71265706 MsG0580027929.01.T01:CDS 40.0%
! TGCCACTCTCTTCATTTTCT+AGG + Chr5:71268538-71268557 MsG0580027929.01.T01:CDS 40.0%
! TTGGTACAGTGTGTCCTTTT+GGG - Chr5:71269257-71269276 None:intergenic 40.0%
! TTGGTCAAAATTGGTCTAGG+GGG + Chr5:71267180-71267199 MsG0580027929.01.T01:intron 40.0%
!! AGGGGTATTAAGATGTTGGA+AGG + Chr5:71268133-71268152 MsG0580027929.01.T01:intron 40.0%
!! TCAGATACTCCCGTTGTTTT+AGG - Chr5:71266429-71266448 None:intergenic 40.0%
!!! TGTTTTGTTGTTGTCTGTGC+AGG + Chr5:71265835-71265854 MsG0580027929.01.T01:intron 40.0%
AAGGGCAAATCTGCTGTTGA+AGG + Chr5:71265705-71265724 MsG0580027929.01.T01:CDS 45.0%
AATAGGAGGGGCAAAGTTCA+GGG + Chr5:71268474-71268493 MsG0580027929.01.T01:CDS 45.0%
ACAGCAGATTTGCCCTTACA+AGG - Chr5:71265702-71265721 None:intergenic 45.0%
ACCAATGAAGCAAAGCAACG+TGG - Chr5:71266270-71266289 None:intergenic 45.0%
ATATTATCAGGTGCACTGCC+AGG + Chr5:71266179-71266198 MsG0580027929.01.T01:intron 45.0%
CAAGCTTGTGACCTAAGTAG+GGG + Chr5:71268115-71268134 MsG0580027929.01.T01:intron 45.0%
CACAAGCTTGTGACCTAAGT+AGG + Chr5:71268113-71268132 MsG0580027929.01.T01:intron 45.0%
CCGAACCACTCATAATAAGG+AGG - Chr5:71265741-71265760 None:intergenic 45.0%
CTTCATGGGTTTCGAACAAG+TGG + Chr5:71265594-71265613 MsG0580027929.01.T01:CDS 45.0%
GGACACACTGTACCAAGATT+AGG + Chr5:71269261-71269280 MsG0580027929.01.T01:CDS 45.0%
TAATAGGAGGGGCAAAGTTC+AGG + Chr5:71268473-71268492 MsG0580027929.01.T01:CDS 45.0%
TAGGGAGCCAAAAGTGGAAA+GGG - Chr5:71266947-71266966 None:intergenic 45.0%
TCGACCCTCCTTATTATGAG+TGG + Chr5:71265733-71265752 MsG0580027929.01.T01:CDS 45.0%
TGCAAAGGGGGCAAAACATA+GGG + Chr5:71267210-71267229 MsG0580027929.01.T01:intron 45.0%
TGGAAAGGGGGCAAAACATA+GGG - Chr5:71266933-71266952 None:intergenic 45.0%
TGGTCTTCTTGGATTCTCAC+AGG + Chr5:71265934-71265953 MsG0580027929.01.T01:CDS 45.0%
TTGGAAAAGTAACACCACCG+GGG - Chr5:71266763-71266782 None:intergenic 45.0%
! CACTTTGGGAACTTTCGTGA+GGG - Chr5:71268440-71268459 None:intergenic 45.0%
! CGATGCTCCTTTTCCTTGTA+AGG + Chr5:71265686-71265705 MsG0580027929.01.T01:CDS 45.0%
! CTTGGTACAGTGTGTCCTTT+TGG - Chr5:71269258-71269277 None:intergenic 45.0%
! TCACTTTGGGAACTTTCGTG+AGG - Chr5:71268441-71268460 None:intergenic 45.0%
! TCCACGTTGCTTTGCTTCAT+TGG + Chr5:71266266-71266285 MsG0580027929.01.T01:intron 45.0%
! TTTTGCCCCCTTTCCACTTT+TGG + Chr5:71266937-71266956 MsG0580027929.01.T01:intron 45.0%
! TTTTGCCCCCTTTGCACTTT+TGG - Chr5:71267206-71267225 None:intergenic 45.0%
!! ATGTGGTGCCACGTCAAAAT+TGG - Chr5:71266972-71266991 None:intergenic 45.0%
!!! ATTATTATTTTTTCATAATT+TGG + Chr5:71265774-71265793 MsG0580027929.01.T01:intron 5.0%
!!! TTATTATTTTTTCATAATTT+GGG + Chr5:71265775-71265794 MsG0580027929.01.T01:intron 5.0%
AATCTATTCGATTCCCCCGG+TGG + Chr5:71266746-71266765 MsG0580027929.01.T01:intron 50.0%
AGGGAGCCAAAAGTGGAAAG+GGG - Chr5:71266946-71266965 None:intergenic 50.0%
CAAAGGGGGCAAAACATAGG+GGG + Chr5:71267212-71267231 MsG0580027929.01.T01:intron 50.0%
CATACCTTCTCCTGAAGACC+TGG - Chr5:71266200-71266219 None:intergenic 50.0%
CTAGGGAGCCAAAAGTGGAA+AGG - Chr5:71266948-71266967 None:intergenic 50.0%
GAAAGGGGGCAAAACATAGG+GGG - Chr5:71266931-71266950 None:intergenic 50.0%
GCAAAGGGGGCAAAACATAG+GGG + Chr5:71267211-71267230 MsG0580027929.01.T01:intron 50.0%
GCAACGTGGACAAACGACAA+AGG - Chr5:71266256-71266275 None:intergenic 50.0%
GGAAAGGGGGCAAAACATAG+GGG - Chr5:71266932-71266951 None:intergenic 50.0%
GTGCAAAGGGGGCAAAACAT+AGG + Chr5:71267209-71267228 MsG0580027929.01.T01:intron 50.0%
GTGGAAAGGGGGCAAAACAT+AGG - Chr5:71266934-71266953 None:intergenic 50.0%
TGACCAAGTCAATGCTGACG+TGG - Chr5:71267167-71267186 None:intergenic 50.0%
TGGAAAAGTAACACCACCGG+GGG - Chr5:71266762-71266781 None:intergenic 50.0%
! AAAGTTCAGGGCACCTTCAG+TGG + Chr5:71268486-71268505 MsG0580027929.01.T01:CDS 50.0%
! GCCACGTCAAAATTGGCCTA+GGG - Chr5:71266965-71266984 None:intergenic 50.0%
! GGACCGTTTGATGGTCTTCT+TGG + Chr5:71265923-71265942 MsG0580027929.01.T01:CDS 50.0%
! TAGGGGGCCAAAAGTGCAAA+GGG + Chr5:71267196-71267215 MsG0580027929.01.T01:intron 50.0%
! TGCCACGTCAAAATTGGCCT+AGG - Chr5:71266966-71266985 None:intergenic 50.0%
! TGTTTGACTTAGGGCCCGTT+TGG - Chr5:71267870-71267889 None:intergenic 50.0%
!! TCCCTAGGCCAATTTTGACG+TGG + Chr5:71266961-71266980 MsG0580027929.01.T01:intron 50.0%
!!! CTTTCCACTTTTGGCTCCCT+AGG + Chr5:71266946-71266965 MsG0580027929.01.T01:intron 50.0%
ACTGCCAGGTCTTCAGGAGA+AGG + Chr5:71266193-71266212 MsG0580027929.01.T01:intron 55.0%
GGGAGCCAAAAGTGGAAAGG+GGG - Chr5:71266945-71266964 None:intergenic 55.0%
TTGGCCTAGGGAGCCAAAAG+TGG - Chr5:71266953-71266972 None:intergenic 55.0%
! AGGGGGCCAAAAGTGCAAAG+GGG + Chr5:71267197-71267216 MsG0580027929.01.T01:intron 55.0%
! CTAGGGGGCCAAAAGTGCAA+AGG + Chr5:71267195-71267214 MsG0580027929.01.T01:intron 55.0%
! TGAGTGGTTCGGGTACAACG+AGG + Chr5:71265749-71265768 MsG0580027929.01.T01:CDS 55.0%
AGGTGCACTGCCAGGTCTTC+AGG + Chr5:71266187-71266206 MsG0580027929.01.T01:intron 60.0%
! GGGGGCCAAAAGTGCAAAGG+GGG + Chr5:71267198-71267217 MsG0580027929.01.T01:intron 60.0%
!! GCGCCACGTCAGCATTGACT+TGG + Chr5:71267161-71267180 MsG0580027929.01.T01:intron 60.0%
Chromosome Type Strat End Strand Name
Chr5 gene 71265543 71269525 71265543 ID=MsG0580027929.01;Name=MsG0580027929.01
Chr5 mRNA 71265543 71269525 71265543 ID=MsG0580027929.01.T01;Parent=MsG0580027929.01;Name=MsG0580027929.01.T01;_AED=0.42;_eAED=0.47;_QI=0|0|0|1|0.75|0.6|5|0|236
Chr5 exon 71265543 71265770 71265543 ID=MsG0580027929.01.T01:exon:4886;Parent=MsG0580027929.01.T01
Chr5 exon 71265857 71265955 71265857 ID=MsG0580027929.01.T01:exon:4887;Parent=MsG0580027929.01.T01
Chr5 exon 71268430 71268559 71268430 ID=MsG0580027929.01.T01:exon:4888;Parent=MsG0580027929.01.T01
Chr5 exon 71269181 71269319 71269181 ID=MsG0580027929.01.T01:exon:4889;Parent=MsG0580027929.01.T01
Chr5 exon 71269411 71269525 71269411 ID=MsG0580027929.01.T01:exon:4890;Parent=MsG0580027929.01.T01
Chr5 CDS 71265543 71265770 71265543 ID=MsG0580027929.01.T01:cds;Parent=MsG0580027929.01.T01
Chr5 CDS 71265857 71265955 71265857 ID=MsG0580027929.01.T01:cds;Parent=MsG0580027929.01.T01
Chr5 CDS 71268430 71268559 71268430 ID=MsG0580027929.01.T01:cds;Parent=MsG0580027929.01.T01
Chr5 CDS 71269181 71269319 71269181 ID=MsG0580027929.01.T01:cds;Parent=MsG0580027929.01.T01
Chr5 CDS 71269411 71269525 71269411 ID=MsG0580027929.01.T01:cds;Parent=MsG0580027929.01.T01
Gene Sequence

>MsG0580027929.01.T01

ATGGAAAACGAAGAGAAGAAGAGGACGGTAAGAAAACCAAGATTTATGTGTCTTCATGGGTTTCGAACAAGTGGAGAGATCATGAAAAAACAGATACATAAGTGGCCACAAAACGTTCTAGACAAACTCGATCTTGTTTTTGTCGATGCTCCTTTTCCTTGTAAGGGCAAATCTGCTGTTGAAGGCATTTTCGACCCTCCTTATTATGAGTGGTTCGGGTACAACGAGGATTTTACAGAGTACGCAAACTTTGATGAGTGTCTGCAATATATTGAGGATTACATGATCAAACATGGACCGTTTGATGGTCTTCTTGGATTCTCACAGGGTGTGGCCCTCACGAAAGTTCCCAAAGTGAAATTCCTTATAATAATAGGAGGGGCAAAGTTCAGGGCACCTTCAGTGGTAGAGAAAGCATATTCTTCAAAAATTGGTTGCCACTCTCTTCATTTTCTAGGAGAGCATGATTTTTTGAAGGAGTATGGAAAAGAACTAATAGATAATTGTGTTGAACCTGTGGTAATTCATCACCCAAAAGGACACACTGTACCAAGATTAGGTGTGCTACTAATCTTCTCTATTTATCTTGTTTATATTTTTCTCCTTTATTTTTCAGATGATAAGAGCTTGAACACCATGATGAGTTTCATAGAAAGAATTCAAAATGATATTATATCTGAAAATAAAGAGGAGATTCAGTCGATGAGCTAA
Protein sequence

>MsG0580027929.01.T01

MENEEKKRTVRKPRFMCLHGFRTSGEIMKKQIHKWPQNVLDKLDLVFVDAPFPCKGKSAVEGIFDPPYYEWFGYNEDFTEYANFDECLQYIEDYMIKHGPFDGLLGFSQGVALTKVPKVKFLIIIGGAKFRAPSVVEKAYSSKIGCHSLHFLGEHDFLKEYGKELIDNCVEPVVIHHPKGHTVPRLGVLLIFSIYLVYIFLLYFSDDKSLNTMMSFIERIQNDIISENKEEIQSMS*