Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580027930.01.T01 | RHN79211.1 | 63.538 | 277 | 75 | 3 | 164 | 437 | 9 | 262 | 5.49E-122 | 365 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580027930.01.T01 | A0A396JR61 | 63.538 | 277 | 75 | 3 | 164 | 437 | 9 | 262 | 2.62e-122 | 365 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0580027930.01 | MsG0780036614.01 | 0.874517 | 6.348561e-68 | 2.866183e-64 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580027930.01.T01 | MTR_0126s0010 | 55.556 | 315 | 125 | 2 | 126 | 437 | 10 | 312 | 7.60e-121 | 354 |
| MsG0580027930.01.T01 | MTR_7g070630 | 47.135 | 384 | 175 | 5 | 44 | 415 | 44 | 411 | 1.55e-113 | 340 |
| MsG0580027930.01.T01 | MTR_3g455890 | 44.575 | 424 | 191 | 5 | 13 | 415 | 4 | 404 | 1.22e-107 | 325 |
| MsG0580027930.01.T01 | MTR_3g080720 | 44.175 | 412 | 204 | 5 | 9 | 413 | 8 | 400 | 1.48e-96 | 296 |
| MsG0580027930.01.T01 | MTR_5g079810 | 45.970 | 335 | 143 | 6 | 95 | 415 | 1 | 311 | 4.63e-90 | 277 |
| MsG0580027930.01.T01 | MTR_1g044605 | 37.190 | 363 | 202 | 12 | 55 | 406 | 36 | 383 | 2.25e-67 | 221 |
| MsG0580027930.01.T01 | MTR_8g469580 | 38.218 | 348 | 188 | 9 | 45 | 381 | 43 | 374 | 2.08e-64 | 214 |
| MsG0580027930.01.T01 | MTR_0084s0060 | 33.495 | 412 | 160 | 6 | 4 | 415 | 9 | 306 | 5.95e-62 | 204 |
| MsG0580027930.01.T01 | MTR_8g056180 | 34.943 | 352 | 200 | 13 | 95 | 432 | 1 | 337 | 8.94e-55 | 186 |
| MsG0580027930.01.T01 | MTR_6g065960 | 54.430 | 158 | 59 | 4 | 103 | 247 | 41 | 198 | 5.57e-46 | 162 |
| MsG0580027930.01.T01 | MTR_1g052090 | 28.608 | 395 | 211 | 11 | 45 | 432 | 28 | 358 | 5.76e-45 | 160 |
| MsG0580027930.01.T01 | MTR_6g463930 | 27.820 | 399 | 236 | 10 | 1 | 392 | 1 | 354 | 2.74e-36 | 139 |
| MsG0580027930.01.T01 | MTR_6g088860 | 35.514 | 214 | 128 | 5 | 95 | 299 | 1 | 213 | 1.06e-32 | 124 |
| MsG0580027930.01.T01 | MTR_6g466450 | 35.514 | 214 | 128 | 5 | 95 | 299 | 1 | 213 | 1.06e-32 | 124 |
| MsG0580027930.01.T01 | MTR_5g095330 | 30.627 | 271 | 152 | 9 | 13 | 263 | 3 | 257 | 1.53e-26 | 108 |
| MsG0580027930.01.T01 | MTR_5g095400 | 29.851 | 268 | 158 | 9 | 13 | 266 | 267 | 518 | 1.14e-22 | 100 |
| MsG0580027930.01.T01 | MTR_5g039510 | 34.054 | 185 | 108 | 6 | 87 | 261 | 40 | 220 | 1.17e-22 | 100 |
| MsG0580027930.01.T01 | MTR_5g095430 | 29.911 | 224 | 140 | 7 | 52 | 263 | 288 | 506 | 1.40e-22 | 100 |
| MsG0580027930.01.T01 | MTR_5g095310 | 33.939 | 165 | 88 | 5 | 107 | 253 | 201 | 362 | 1.28e-18 | 87.4 |
| MsG0580027930.01.T01 | MTR_5g039515 | 32.584 | 178 | 105 | 6 | 107 | 272 | 4 | 178 | 9.42e-17 | 81.3 |
| MsG0580027930.01.T01 | MTR_6g023550 | 32.022 | 178 | 94 | 5 | 84 | 246 | 160 | 325 | 2.49e-16 | 80.1 |
| MsG0580027930.01.T01 | MTR_5g095270 | 33.735 | 166 | 89 | 5 | 100 | 258 | 26 | 177 | 2.94e-16 | 77.0 |
| MsG0580027930.01.T01 | MTR_8g009850 | 25.738 | 237 | 130 | 7 | 55 | 284 | 175 | 372 | 3.79e-12 | 67.8 |
| MsG0580027930.01.T01 | MTR_4g027155 | 26.389 | 216 | 134 | 7 | 33 | 234 | 8 | 212 | 4.99e-12 | 67.4 |
| MsG0580027930.01.T01 | MTR_7g105490 | 24.074 | 270 | 164 | 8 | 162 | 419 | 27 | 267 | 1.93e-11 | 65.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 132 sgRNAs with CRISPR-Local
Find 145 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TAGCCCCTGGCCTACACATT+TGG | 0.305734 | 5:-71293354 | None:intergenic |
| TGGTGATGATGATGTGGATA+TGG | 0.310469 | 5:+71294134 | MsG0580027930.01.T01:CDS |
| GGCATGGGAGCATGATTAAT+TGG | 0.311432 | 5:+71293602 | MsG0580027930.01.T01:CDS |
| AAGGGTAGCAAGTCAGTCTA+TGG | 0.322784 | 5:+71293580 | MsG0580027930.01.T01:CDS |
| TGCTGCTGTGGTGATGCTTC+AGG | 0.333152 | 5:-71293757 | None:intergenic |
| TTAGAAGGTGGTTGTTGTTT+GGG | 0.333161 | 5:-71292854 | None:intergenic |
| CTCCGAACCGCACACTCTTC+CGG | 0.351371 | 5:-71293277 | None:intergenic |
| TTTAGAAGGTGGTTGTTGTT+TGG | 0.351872 | 5:-71292855 | None:intergenic |
| CGGTTCGTTTGCGTTTGTTT+TGG | 0.352640 | 5:-71292934 | None:intergenic |
| ACATGTTCAGTTCTGCTAAC+TGG | 0.368410 | 5:+71293857 | MsG0580027930.01.T01:CDS |
| ACAAAAGAGGCCCATGCCTT+TGG | 0.374679 | 5:-71293424 | None:intergenic |
| GACTTCTTTGATGGGATACC+CGG | 0.379874 | 5:+71294105 | MsG0580027930.01.T01:CDS |
| GCCTATCACTGACAAGACTA+TGG | 0.383761 | 5:+71293684 | MsG0580027930.01.T01:CDS |
| TGACAAGTCTAGGGAGTCTA+TGG | 0.383982 | 5:+71293990 | MsG0580027930.01.T01:CDS |
| GATGCTGATGACTTCTTTGA+TGG | 0.388623 | 5:+71294096 | MsG0580027930.01.T01:CDS |
| TGACGGGTCAATGGTTTAGA+AGG | 0.390897 | 5:-71292869 | None:intergenic |
| CTTGCCCAAATGTGTAGGCC+AGG | 0.391215 | 5:+71293349 | MsG0580027930.01.T01:CDS |
| CTATGCAAACGCTCGTTTCA+CGG | 0.395920 | 5:+71293171 | MsG0580027930.01.T01:CDS |
| AGAGTGTGCGGTTCGGAGAC+TGG | 0.396254 | 5:+71293282 | MsG0580027930.01.T01:CDS |
| CTGCTATAAACAATTTGCTT+GGG | 0.401942 | 5:+71293245 | MsG0580027930.01.T01:CDS |
| AGCCCCTGGCCTACACATTT+GGG | 0.405915 | 5:-71293353 | None:intergenic |
| AGCAAATTGTTTATAGCAGC+AGG | 0.412969 | 5:-71293241 | None:intergenic |
| TCTAGAACCATAGGATGAAC+TGG | 0.414705 | 5:-71293832 | None:intergenic |
| TCTTAGGCTTGGATTGTTGA+CGG | 0.422359 | 5:-71292886 | None:intergenic |
| ATCTGTGGTGGCTGCTGCTG+TGG | 0.422722 | 5:-71293769 | None:intergenic |
| TGCGATCATATGAATGTTGT+TGG | 0.423548 | 5:-71293557 | None:intergenic |
| TTACCCTCCAGTTCATCCTA+TGG | 0.445154 | 5:+71293825 | MsG0580027930.01.T01:CDS |
| CTTGTCAGTGATAGGCTTTG+TGG | 0.447222 | 5:-71293677 | None:intergenic |
| CTCTCATAAGACCCGGTGAT+AGG | 0.449163 | 5:-71293964 | None:intergenic |
| ATGAACCGGTTAACATTTGT+TGG | 0.452223 | 5:-71292965 | None:intergenic |
| ATTCAGCATAAGTCAACATC+CGG | 0.454165 | 5:-71293390 | None:intergenic |
| ACAGCAGCAGCCACCACAGA+TGG | 0.454342 | 5:+71293771 | MsG0580027930.01.T01:CDS |
| ACAGATTTGTTATTCTCTTC+CGG | 0.456096 | 5:-71293136 | None:intergenic |
| CAATGCTTCGTGAGAGAGGA+TGG | 0.459561 | 5:+71293092 | MsG0580027930.01.T01:CDS |
| AAACCACGCTCTAGCATCTT+CGG | 0.460440 | 5:-71292990 | None:intergenic |
| GAGGCCCATGCCTTTGGAAT+GGG | 0.464107 | 5:-71293418 | None:intergenic |
| TCCCACCAACAAATGTTAAC+CGG | 0.464463 | 5:+71292960 | MsG0580027930.01.T01:CDS |
| GCTGCTATAAACAATTTGCT+TGG | 0.465403 | 5:+71293244 | MsG0580027930.01.T01:CDS |
| ATCACTGATGATTTCGAGGC+AGG | 0.465692 | 5:+71294063 | MsG0580027930.01.T01:CDS |
| GCTTTCTTCCATGTAGCCCC+TGG | 0.470874 | 5:-71293367 | None:intergenic |
| CGAAGCATTGTGTCAAAGAC+TGG | 0.471791 | 5:-71293079 | None:intergenic |
| CTCCGCTGAGTTTGCTGCAG+AGG | 0.472577 | 5:+71293924 | MsG0580027930.01.T01:CDS |
| CTTAGGCTTGGATTGTTGAC+GGG | 0.474259 | 5:-71292885 | None:intergenic |
| ATGAGAGGTTTGACAAGTCT+AGG | 0.474360 | 5:+71293980 | MsG0580027930.01.T01:CDS |
| TTGCCCAAATGTGTAGGCCA+GGG | 0.474952 | 5:+71293350 | MsG0580027930.01.T01:CDS |
| GATGCTGGTGTTAGAATTTG+AGG | 0.475700 | 5:+71293636 | MsG0580027930.01.T01:CDS |
| ATCATCATCACCAGCAGTCC+CGG | 0.475982 | 5:-71294124 | None:intergenic |
| TTGGATTGTTGACGGGTCAA+TGG | 0.479641 | 5:-71292878 | None:intergenic |
| TGAAAGCAGCATATCGCTCT+TGG | 0.488614 | 5:-71294029 | None:intergenic |
| TGTGTAGGCCAGGGGCTACA+TGG | 0.496253 | 5:+71293359 | MsG0580027930.01.T01:CDS |
| TAGCATCTTCGGAAATGAAC+CGG | 0.497434 | 5:-71292979 | None:intergenic |
| CACCGGAAGAGTGTGCGGTT+CGG | 0.498152 | 5:+71293275 | MsG0580027930.01.T01:CDS |
| TCCATAGTCTTGTCAGTGAT+AGG | 0.499167 | 5:-71293685 | None:intergenic |
| GCGTGGTTTGATTATTGCAA+GGG | 0.510127 | 5:+71293004 | MsG0580027930.01.T01:CDS |
| GAATAACAAATCTGTGGTGA+TGG | 0.511957 | 5:+71293144 | MsG0580027930.01.T01:CDS |
| AGCAAGTCAGTCTATGGGCA+TGG | 0.517415 | 5:+71293586 | MsG0580027930.01.T01:CDS |
| AACATTCATATGATCGCAAA+GGG | 0.519803 | 5:+71293562 | MsG0580027930.01.T01:CDS |
| GATGGGATACCCGGGACTGC+TGG | 0.521770 | 5:+71294114 | MsG0580027930.01.T01:CDS |
| AGAGGCCCATGCCTTTGGAA+TGG | 0.525477 | 5:-71293419 | None:intergenic |
| GGTGATGATGATGTGGATAT+GGG | 0.526917 | 5:+71294135 | MsG0580027930.01.T01:CDS |
| GTTAACATTTGTTGGTGGGA+CGG | 0.527597 | 5:-71292957 | None:intergenic |
| TGATGATGTGGATATGGGAC+TGG | 0.528108 | 5:+71294140 | MsG0580027930.01.T01:CDS |
| TTTGCCCATTCCAAAGGCAT+GGG | 0.530432 | 5:+71293414 | MsG0580027930.01.T01:CDS |
| AAAGTTGGGGTGATGATCGA+TGG | 0.531489 | 5:+71293317 | MsG0580027930.01.T01:CDS |
| CTGCAGAGGCACAGATGCAT+AGG | 0.534655 | 5:+71293938 | MsG0580027930.01.T01:CDS |
| CCCTCTCCATGCTCCATCTG+TGG | 0.536326 | 5:-71293784 | None:intergenic |
| GGGCTACATGGAAGAAAGCC+CGG | 0.536861 | 5:+71293371 | MsG0580027930.01.T01:CDS |
| AACCGGTTAACATTTGTTGG+TGG | 0.537645 | 5:-71292962 | None:intergenic |
| GGAGATCACTGATGATTTCG+AGG | 0.539074 | 5:+71294059 | MsG0580027930.01.T01:CDS |
| CGGGTCAATGGTTTAGAAGG+TGG | 0.540000 | 5:-71292866 | None:intergenic |
| TGAGAGGTTTGACAAGTCTA+GGG | 0.544498 | 5:+71293981 | MsG0580027930.01.T01:CDS |
| ACCGGTTAACATTTGTTGGT+GGG | 0.544765 | 5:-71292961 | None:intergenic |
| CAGCCACCACAGATGGAGCA+TGG | 0.549449 | 5:+71293778 | MsG0580027930.01.T01:CDS |
| ATATGCTGCTTTCATGAAGA+AGG | 0.551879 | 5:+71294038 | MsG0580027930.01.T01:CDS |
| ATGCATAGGAGGCCTATCAC+CGG | 0.552390 | 5:+71293952 | MsG0580027930.01.T01:CDS |
| GATCAACAACACATAAATGT+TGG | 0.552822 | 5:+71293523 | MsG0580027930.01.T01:CDS |
| AGCGTGGTTTGATTATTGCA+AGG | 0.554170 | 5:+71293003 | MsG0580027930.01.T01:CDS |
| AAGCGTCTGAATAACAAAAG+AGG | 0.556805 | 5:-71293437 | None:intergenic |
| GCAAACTCAGCGGAGAACCT+CGG | 0.557568 | 5:-71293916 | None:intergenic |
| TGATTTCGAGGCAGGAGAGA+AGG | 0.560864 | 5:+71294071 | MsG0580027930.01.T01:CDS |
| CAGAGGCACAGATGCATAGG+AGG | 0.562785 | 5:+71293941 | MsG0580027930.01.T01:CDS |
| CCACAGATGGAGCATGGAGA+GGG | 0.563293 | 5:+71293784 | MsG0580027930.01.T01:CDS |
| TTGGCTAGATGAAGGTTGGG+TGG | 0.569408 | 5:-71292915 | None:intergenic |
| TTTGCTTGGGTTAATTGCAC+CGG | 0.572306 | 5:+71293258 | MsG0580027930.01.T01:CDS |
| TCAGTGATAGGCTTTGTGGT+AGG | 0.575271 | 5:-71293673 | None:intergenic |
| GACACAATGCTTCGTGAGAG+AGG | 0.580044 | 5:+71293088 | MsG0580027930.01.T01:CDS |
| TCATCATCACCAGCAGTCCC+GGG | 0.580476 | 5:-71294123 | None:intergenic |
| GCAAGTCAGTCTATGGGCAT+GGG | 0.580666 | 5:+71293587 | MsG0580027930.01.T01:CDS |
| AATATCAATCCTACGTTCGA+GGG | 0.584558 | 5:+71293200 | MsG0580027930.01.T01:CDS |
| TGCATAGGAGGCCTATCACC+GGG | 0.585016 | 5:+71293953 | MsG0580027930.01.T01:CDS |
| CAACATTCATATGATCGCAA+AGG | 0.585107 | 5:+71293561 | MsG0580027930.01.T01:CDS |
| AAATATCAATCCTACGTTCG+AGG | 0.585399 | 5:+71293199 | MsG0580027930.01.T01:CDS |
| GATTATATGCGGAGGAGAAG+CGG | 0.595654 | 5:+71293730 | MsG0580027930.01.T01:CDS |
| TCAATCCTACGTTCGAGGGA+AGG | 0.596358 | 5:+71293204 | MsG0580027930.01.T01:CDS |
| AGAGTTGAACAACATGGTAC+CGG | 0.599561 | 5:+71293117 | MsG0580027930.01.T01:CDS |
| ATGCTGGTGTTAGAATTTGA+GGG | 0.599616 | 5:+71293637 | MsG0580027930.01.T01:CDS |
| TCTCCATGCTCCATCTGTGG+TGG | 0.599890 | 5:-71293781 | None:intergenic |
| CTATCACCGGGTCTTATGAG+AGG | 0.599958 | 5:+71293965 | MsG0580027930.01.T01:CDS |
| AGGGTAGCAAGTCAGTCTAT+GGG | 0.600699 | 5:+71293581 | MsG0580027930.01.T01:CDS |
| AACATTTGTTGGTGGGACGG+CGG | 0.602893 | 5:-71292954 | None:intergenic |
| ACAGTGAGTACTCGCTTGAG+AGG | 0.603154 | 5:-71293487 | None:intergenic |
| ATGCTGATGACTTCTTTGAT+GGG | 0.605977 | 5:+71294097 | MsG0580027930.01.T01:CDS |
| TCATGTGGGTTAACCGTCCG+AGG | 0.607395 | 5:+71293899 | MsG0580027930.01.T01:CDS |
| TTCAGCATAAGTCAACATCC+GGG | 0.614657 | 5:-71293389 | None:intergenic |
| TATCACCTTCCCTCGAACGT+AGG | 0.616562 | 5:-71293209 | None:intergenic |
| AACATGTACTCTAGAACCAT+AGG | 0.616667 | 5:-71293841 | None:intergenic |
| ATGAGACCTCTGATCTCATG+TGG | 0.619170 | 5:+71293884 | MsG0580027930.01.T01:CDS |
| ACCACAGATGGAGCATGGAG+AGG | 0.622954 | 5:+71293783 | MsG0580027930.01.T01:CDS |
| TGCCCAAATGTGTAGGCCAG+GGG | 0.623210 | 5:+71293351 | MsG0580027930.01.T01:CDS |
| GACTGCTGGTGATGATGATG+TGG | 0.627749 | 5:+71294128 | MsG0580027930.01.T01:CDS |
| GTCAAACCTCTCATAAGACC+CGG | 0.632159 | 5:-71293971 | None:intergenic |
| TTGGCTATGTGAGAAGATGC+TGG | 0.636998 | 5:+71293621 | MsG0580027930.01.T01:CDS |
| AGTTGCTTGCCCAAATGTGT+AGG | 0.641144 | 5:+71293344 | MsG0580027930.01.T01:CDS |
| AATTGCACCGGAAGAGTGTG+CGG | 0.641585 | 5:+71293270 | MsG0580027930.01.T01:CDS |
| ACTTCTTTGATGGGATACCC+GGG | 0.642798 | 5:+71294106 | MsG0580027930.01.T01:CDS |
| AAGTTGGGGTGATGATCGAT+GGG | 0.645680 | 5:+71293318 | MsG0580027930.01.T01:CDS |
| GGAGAGGGTAGTAGTCAGCA+TGG | 0.646387 | 5:+71293799 | MsG0580027930.01.T01:CDS |
| AATGCTTCGTGAGAGAGGAT+GGG | 0.650431 | 5:+71293093 | MsG0580027930.01.T01:CDS |
| GGAAGAGAATAACAAATCTG+TGG | 0.651199 | 5:+71293138 | MsG0580027930.01.T01:CDS |
| AGAACCATAGGATGAACTGG+AGG | 0.665899 | 5:-71293829 | None:intergenic |
| TGCCTCTGCAGCAAACTCAG+CGG | 0.675090 | 5:-71293926 | None:intergenic |
| GAACCATAGGATGAACTGGA+GGG | 0.675620 | 5:-71293828 | None:intergenic |
| AAAAGTACGCGGATTATATG+CGG | 0.686913 | 5:+71293719 | MsG0580027930.01.T01:CDS |
| GTTAACCCACATGAGATCAG+AGG | 0.698010 | 5:-71293890 | None:intergenic |
| TTTCCGAAGATGCTAGAGCG+TGG | 0.700500 | 5:+71292987 | MsG0580027930.01.T01:CDS |
| AGTACGCGGATTATATGCGG+AGG | 0.706428 | 5:+71293722 | MsG0580027930.01.T01:CDS |
| ACTCAGCGGAGAACCTCGGA+CGG | 0.706523 | 5:-71293912 | None:intergenic |
| GGGAGAACGAAAATTTGATG+TGG | 0.711063 | 5:+71293039 | MsG0580027930.01.T01:CDS |
| TGAGACCTCTGATCTCATGT+GGG | 0.715752 | 5:+71293885 | MsG0580027930.01.T01:CDS |
| ATGGGAAGAGTTGAACAACA+TGG | 0.730778 | 5:+71293111 | MsG0580027930.01.T01:CDS |
| TCGCTTGAGAGGAATCTCAG+AGG | 0.759702 | 5:-71293476 | None:intergenic |
| GATATGGGACTGGATCACTG+AGG | 0.865994 | 5:+71294150 | MsG0580027930.01.T01:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| AACATTCATATGATCGCAAA+GGG | + | Chr5:71293562-71293581 | MsG0580027930.01.T01:CDS | 30.0% | |
| GATCAACAACACATAAATGT+TGG | + | Chr5:71293523-71293542 | MsG0580027930.01.T01:CDS | 30.0% | |
| ! | CTGCTATAAACAATTTGCTT+GGG | + | Chr5:71293245-71293264 | MsG0580027930.01.T01:CDS | 30.0% |
| !! | ACAGATTTGTTATTCTCTTC+CGG | - | Chr5:71293139-71293158 | None:intergenic | 30.0% |
| AAATATCAATCCTACGTTCG+AGG | + | Chr5:71293199-71293218 | MsG0580027930.01.T01:CDS | 35.0% | |
| AAGCGTCTGAATAACAAAAG+AGG | - | Chr5:71293440-71293459 | None:intergenic | 35.0% | |
| AATATCAATCCTACGTTCGA+GGG | + | Chr5:71293200-71293219 | MsG0580027930.01.T01:CDS | 35.0% | |
| AGCAAATTGTTTATAGCAGC+AGG | - | Chr5:71293244-71293263 | None:intergenic | 35.0% | |
| ATGAACCGGTTAACATTTGT+TGG | - | Chr5:71292968-71292987 | None:intergenic | 35.0% | |
| ATGCTGATGACTTCTTTGAT+GGG | + | Chr5:71294097-71294116 | MsG0580027930.01.T01:CDS | 35.0% | |
| ATTCAGCATAAGTCAACATC+CGG | - | Chr5:71293393-71293412 | None:intergenic | 35.0% | |
| CAACATTCATATGATCGCAA+AGG | + | Chr5:71293561-71293580 | MsG0580027930.01.T01:CDS | 35.0% | |
| GAATAACAAATCTGTGGTGA+TGG | + | Chr5:71293144-71293163 | MsG0580027930.01.T01:CDS | 35.0% | |
| GGAAGAGAATAACAAATCTG+TGG | + | Chr5:71293138-71293157 | MsG0580027930.01.T01:CDS | 35.0% | |
| TGCGATCATATGAATGTTGT+TGG | - | Chr5:71293560-71293579 | None:intergenic | 35.0% | |
| ! | AAAAGTACGCGGATTATATG+CGG | + | Chr5:71293719-71293738 | MsG0580027930.01.T01:CDS | 35.0% |
| ! | ATGCTGGTGTTAGAATTTGA+GGG | + | Chr5:71293637-71293656 | MsG0580027930.01.T01:CDS | 35.0% |
| ! | GCTGCTATAAACAATTTGCT+TGG | + | Chr5:71293244-71293263 | MsG0580027930.01.T01:CDS | 35.0% |
| ! | TGAATTTTTGCCCATTCCAA+AGG | + | Chr5:71293408-71293427 | MsG0580027930.01.T01:CDS | 35.0% |
| ! | TGTCTTGATGAAAAAGTACG+CGG | + | Chr5:71293708-71293727 | MsG0580027930.01.T01:CDS | 35.0% |
| ! | TTTAGAAGGTGGTTGTTGTT+TGG | - | Chr5:71292858-71292877 | None:intergenic | 35.0% |
| !! | AACATGTACTCTAGAACCAT+AGG | - | Chr5:71293844-71293863 | None:intergenic | 35.0% |
| !! | ATATGCTGCTTTCATGAAGA+AGG | + | Chr5:71294038-71294057 | MsG0580027930.01.T01:CDS | 35.0% |
| !! | TTAGAAGGTGGTTGTTGTTT+GGG | - | Chr5:71292857-71292876 | None:intergenic | 35.0% |
| !!! | TTATTGCAAGGGTTTTGAAG+TGG | + | Chr5:71293015-71293034 | MsG0580027930.01.T01:CDS | 35.0% |
| ACATGTTCAGTTCTGCTAAC+TGG | + | Chr5:71293857-71293876 | MsG0580027930.01.T01:CDS | 40.0% | |
| AGAGTTGAACAACATGGTAC+CGG | + | Chr5:71293117-71293136 | MsG0580027930.01.T01:CDS | 40.0% | |
| AGCGTGGTTTGATTATTGCA+AGG | + | Chr5:71293003-71293022 | MsG0580027930.01.T01:CDS | 40.0% | |
| ATGAGAGGTTTGACAAGTCT+AGG | + | Chr5:71293980-71293999 | MsG0580027930.01.T01:CDS | 40.0% | |
| ATGGGAAGAGTTGAACAACA+TGG | + | Chr5:71293111-71293130 | MsG0580027930.01.T01:CDS | 40.0% | |
| GATGCTGATGACTTCTTTGA+TGG | + | Chr5:71294096-71294115 | MsG0580027930.01.T01:CDS | 40.0% | |
| GCGTGGTTTGATTATTGCAA+GGG | + | Chr5:71293004-71293023 | MsG0580027930.01.T01:CDS | 40.0% | |
| GGGAGAACGAAAATTTGATG+TGG | + | Chr5:71293039-71293058 | MsG0580027930.01.T01:CDS | 40.0% | |
| TAGCATCTTCGGAAATGAAC+CGG | - | Chr5:71292982-71293001 | None:intergenic | 40.0% | |
| TCCCACCAACAAATGTTAAC+CGG | + | Chr5:71292960-71292979 | MsG0580027930.01.T01:CDS | 40.0% | |
| TCTTAGGCTTGGATTGTTGA+CGG | - | Chr5:71292889-71292908 | None:intergenic | 40.0% | |
| TGAGAGGTTTGACAAGTCTA+GGG | + | Chr5:71293981-71294000 | MsG0580027930.01.T01:CDS | 40.0% | |
| TTCAGCATAAGTCAACATCC+GGG | - | Chr5:71293392-71293411 | None:intergenic | 40.0% | |
| TTTGCTTGGGTTAATTGCAC+CGG | + | Chr5:71293258-71293277 | MsG0580027930.01.T01:CDS | 40.0% | |
| ! | AACCGGTTAACATTTGTTGG+TGG | - | Chr5:71292965-71292984 | None:intergenic | 40.0% |
| ! | ACCGGTTAACATTTGTTGGT+GGG | - | Chr5:71292964-71292983 | None:intergenic | 40.0% |
| ! | GATGCTGGTGTTAGAATTTG+AGG | + | Chr5:71293636-71293655 | MsG0580027930.01.T01:CDS | 40.0% |
| ! | GGTGATGATGATGTGGATAT+GGG | + | Chr5:71294135-71294154 | MsG0580027930.01.T01:CDS | 40.0% |
| ! | GTTAACATTTGTTGGTGGGA+CGG | - | Chr5:71292960-71292979 | None:intergenic | 40.0% |
| ! | TCTAGAACCATAGGATGAAC+TGG | - | Chr5:71293835-71293854 | None:intergenic | 40.0% |
| ! | TGGTGATGATGATGTGGATA+TGG | + | Chr5:71294134-71294153 | MsG0580027930.01.T01:CDS | 40.0% |
| !! | TCCATAGTCTTGTCAGTGAT+AGG | - | Chr5:71293688-71293707 | None:intergenic | 40.0% |
| !!! | CGTTTGTTTTGGCTAGATGA+AGG | - | Chr5:71292926-71292945 | None:intergenic | 40.0% |
| !!! | GTTTTGGCTAGATGAAGGTT+GGG | - | Chr5:71292921-71292940 | None:intergenic | 40.0% |
| !!! | TGTTTTGGCTAGATGAAGGT+TGG | - | Chr5:71292922-71292941 | None:intergenic | 40.0% |
| AAACCACGCTCTAGCATCTT+CGG | - | Chr5:71292993-71293012 | None:intergenic | 45.0% | |
| AAAGTTGGGGTGATGATCGA+TGG | + | Chr5:71293317-71293336 | MsG0580027930.01.T01:CDS | 45.0% | |
| AAGGGTAGCAAGTCAGTCTA+TGG | + | Chr5:71293580-71293599 | MsG0580027930.01.T01:CDS | 45.0% | |
| AAGTTGGGGTGATGATCGAT+GGG | + | Chr5:71293318-71293337 | MsG0580027930.01.T01:CDS | 45.0% | |
| AATGCTTCGTGAGAGAGGAT+GGG | + | Chr5:71293093-71293112 | MsG0580027930.01.T01:CDS | 45.0% | |
| ACTTCTTTGATGGGATACCC+GGG | + | Chr5:71294106-71294125 | MsG0580027930.01.T01:CDS | 45.0% | |
| AGAACCATAGGATGAACTGG+AGG | - | Chr5:71293832-71293851 | None:intergenic | 45.0% | |
| AGGGTAGCAAGTCAGTCTAT+GGG | + | Chr5:71293581-71293600 | MsG0580027930.01.T01:CDS | 45.0% | |
| AGTTGCTTGCCCAAATGTGT+AGG | + | Chr5:71293344-71293363 | MsG0580027930.01.T01:CDS | 45.0% | |
| ATCACTGATGATTTCGAGGC+AGG | + | Chr5:71294063-71294082 | MsG0580027930.01.T01:CDS | 45.0% | |
| ATGAGACCTCTGATCTCATG+TGG | + | Chr5:71293884-71293903 | MsG0580027930.01.T01:CDS | 45.0% | |
| CTATGCAAACGCTCGTTTCA+CGG | + | Chr5:71293171-71293190 | MsG0580027930.01.T01:CDS | 45.0% | |
| CTTAGGCTTGGATTGTTGAC+GGG | - | Chr5:71292888-71292907 | None:intergenic | 45.0% | |
| CTTGTCAGTGATAGGCTTTG+TGG | - | Chr5:71293680-71293699 | None:intergenic | 45.0% | |
| GAACCATAGGATGAACTGGA+GGG | - | Chr5:71293831-71293850 | None:intergenic | 45.0% | |
| GACTTCTTTGATGGGATACC+CGG | + | Chr5:71294105-71294124 | MsG0580027930.01.T01:CDS | 45.0% | |
| GAGCGTGAAGCAAAAAGTTG+GGG | + | Chr5:71293304-71293323 | MsG0580027930.01.T01:CDS | 45.0% | |
| GATTATATGCGGAGGAGAAG+CGG | + | Chr5:71293730-71293749 | MsG0580027930.01.T01:CDS | 45.0% | |
| GCCTATCACTGACAAGACTA+TGG | + | Chr5:71293684-71293703 | MsG0580027930.01.T01:CDS | 45.0% | |
| GGAGATCACTGATGATTTCG+AGG | + | Chr5:71294059-71294078 | MsG0580027930.01.T01:CDS | 45.0% | |
| GGAGCGTGAAGCAAAAAGTT+GGG | + | Chr5:71293303-71293322 | MsG0580027930.01.T01:CDS | 45.0% | |
| GTCAAACCTCTCATAAGACC+CGG | - | Chr5:71293974-71293993 | None:intergenic | 45.0% | |
| GTTAACCCACATGAGATCAG+AGG | - | Chr5:71293893-71293912 | None:intergenic | 45.0% | |
| TGAAAGCAGCATATCGCTCT+TGG | - | Chr5:71294032-71294051 | None:intergenic | 45.0% | |
| TGACAAGTCTAGGGAGTCTA+TGG | + | Chr5:71293990-71294009 | MsG0580027930.01.T01:CDS | 45.0% | |
| TGAGACCTCTGATCTCATGT+GGG | + | Chr5:71293885-71293904 | MsG0580027930.01.T01:CDS | 45.0% | |
| TGGAGCGTGAAGCAAAAAGT+TGG | + | Chr5:71293302-71293321 | MsG0580027930.01.T01:CDS | 45.0% | |
| TTACCCTCCAGTTCATCCTA+TGG | + | Chr5:71293825-71293844 | MsG0580027930.01.T01:CDS | 45.0% | |
| TTGGCTATGTGAGAAGATGC+TGG | + | Chr5:71293621-71293640 | MsG0580027930.01.T01:CDS | 45.0% | |
| ! | CGGTTCGTTTGCGTTTGTTT+TGG | - | Chr5:71292937-71292956 | None:intergenic | 45.0% |
| ! | GGCATGGGAGCATGATTAAT+TGG | + | Chr5:71293602-71293621 | MsG0580027930.01.T01:CDS | 45.0% |
| ! | TCAGTGATAGGCTTTGTGGT+AGG | - | Chr5:71293676-71293695 | None:intergenic | 45.0% |
| ! | TGACGGGTCAATGGTTTAGA+AGG | - | Chr5:71292872-71292891 | None:intergenic | 45.0% |
| ! | TGATGATGTGGATATGGGAC+TGG | + | Chr5:71294140-71294159 | MsG0580027930.01.T01:CDS | 45.0% |
| ! | TTGGATTGTTGACGGGTCAA+TGG | - | Chr5:71292881-71292900 | None:intergenic | 45.0% |
| ! | TTTGCCCATTCCAAAGGCAT+GGG | + | Chr5:71293414-71293433 | MsG0580027930.01.T01:CDS | 45.0% |
| ! | TTTTGCCCATTCCAAAGGCA+TGG | + | Chr5:71293413-71293432 | MsG0580027930.01.T01:CDS | 45.0% |
| !! | CGAAGCATTGTGTCAAAGAC+TGG | - | Chr5:71293082-71293101 | None:intergenic | 45.0% |
| !! | GGTGGTTGTTTTCTTAGGCT+TGG | - | Chr5:71292900-71292919 | None:intergenic | 45.0% |
| !! | GGTTGGGTGGTTGTTTTCTT+AGG | - | Chr5:71292905-71292924 | None:intergenic | 45.0% |
| !!! | TGCAAGGGTTTTGAAGTGGT+GGG | + | Chr5:71293019-71293038 | MsG0580027930.01.T01:CDS | 45.0% |
| !!! | TTGCAAGGGTTTTGAAGTGG+TGG | + | Chr5:71293018-71293037 | MsG0580027930.01.T01:CDS | 45.0% |
| ACAAAAGAGGCCCATGCCTT+TGG | - | Chr5:71293427-71293446 | None:intergenic | 50.0% | |
| ACAGTGAGTACTCGCTTGAG+AGG | - | Chr5:71293490-71293509 | None:intergenic | 50.0% | |
| AGCAAGTCAGTCTATGGGCA+TGG | + | Chr5:71293586-71293605 | MsG0580027930.01.T01:CDS | 50.0% | |
| ATCATCATCACCAGCAGTCC+CGG | - | Chr5:71294127-71294146 | None:intergenic | 50.0% | |
| ATGCATAGGAGGCCTATCAC+CGG | + | Chr5:71293952-71293971 | MsG0580027930.01.T01:CDS | 50.0% | |
| CAATGCTTCGTGAGAGAGGA+TGG | + | Chr5:71293092-71293111 | MsG0580027930.01.T01:CDS | 50.0% | |
| CGGGTCAATGGTTTAGAAGG+TGG | - | Chr5:71292869-71292888 | None:intergenic | 50.0% | |
| CTCTCATAAGACCCGGTGAT+AGG | - | Chr5:71293967-71293986 | None:intergenic | 50.0% | |
| GACACAATGCTTCGTGAGAG+AGG | + | Chr5:71293088-71293107 | MsG0580027930.01.T01:CDS | 50.0% | |
| GCAAGTCAGTCTATGGGCAT+GGG | + | Chr5:71293587-71293606 | MsG0580027930.01.T01:CDS | 50.0% | |
| TATCACCTTCCCTCGAACGT+AGG | - | Chr5:71293212-71293231 | None:intergenic | 50.0% | |
| TCAATCCTACGTTCGAGGGA+AGG | + | Chr5:71293204-71293223 | MsG0580027930.01.T01:CDS | 50.0% | |
| TCGCTTGAGAGGAATCTCAG+AGG | - | Chr5:71293479-71293498 | None:intergenic | 50.0% | |
| TGATTTCGAGGCAGGAGAGA+AGG | + | Chr5:71294071-71294090 | MsG0580027930.01.T01:CDS | 50.0% | |
| TTGCCCAAATGTGTAGGCCA+GGG | + | Chr5:71293350-71293369 | MsG0580027930.01.T01:CDS | 50.0% | |
| TTGGCTAGATGAAGGTTGGG+TGG | - | Chr5:71292918-71292937 | None:intergenic | 50.0% | |
| TTTCCGAAGATGCTAGAGCG+TGG | + | Chr5:71292987-71293006 | MsG0580027930.01.T01:CDS | 50.0% | |
| ! | AACATTTGTTGGTGGGACGG+CGG | - | Chr5:71292957-71292976 | None:intergenic | 50.0% |
| ! | AATTGCACCGGAAGAGTGTG+CGG | + | Chr5:71293270-71293289 | MsG0580027930.01.T01:CDS | 50.0% |
| ! | AGTACGCGGATTATATGCGG+AGG | + | Chr5:71293722-71293741 | MsG0580027930.01.T01:CDS | 50.0% |
| ! | CTATCACCGGGTCTTATGAG+AGG | + | Chr5:71293965-71293984 | MsG0580027930.01.T01:CDS | 50.0% |
| ! | GACTGCTGGTGATGATGATG+TGG | + | Chr5:71294128-71294147 | MsG0580027930.01.T01:CDS | 50.0% |
| ACCACAGATGGAGCATGGAG+AGG | + | Chr5:71293783-71293802 | MsG0580027930.01.T01:CDS | 55.0% | |
| AGCCCCTGGCCTACACATTT+GGG | - | Chr5:71293356-71293375 | None:intergenic | 55.0% | |
| CCACAGATGGAGCATGGAGA+GGG | + | Chr5:71293784-71293803 | MsG0580027930.01.T01:CDS | 55.0% | |
| CTTGCCCAAATGTGTAGGCC+AGG | + | Chr5:71293349-71293368 | MsG0580027930.01.T01:CDS | 55.0% | |
| GCAAACTCAGCGGAGAACCT+CGG | - | Chr5:71293919-71293938 | None:intergenic | 55.0% | |
| GCTTTCTTCCATGTAGCCCC+TGG | - | Chr5:71293370-71293389 | None:intergenic | 55.0% | |
| GGAGAGGGTAGTAGTCAGCA+TGG | + | Chr5:71293799-71293818 | MsG0580027930.01.T01:CDS | 55.0% | |
| GGGCTACATGGAAGAAAGCC+CGG | + | Chr5:71293371-71293390 | MsG0580027930.01.T01:CDS | 55.0% | |
| TAGCCCCTGGCCTACACATT+TGG | - | Chr5:71293357-71293376 | None:intergenic | 55.0% | |
| TCATCATCACCAGCAGTCCC+GGG | - | Chr5:71294126-71294145 | None:intergenic | 55.0% | |
| TCTCCATGCTCCATCTGTGG+TGG | - | Chr5:71293784-71293803 | None:intergenic | 55.0% | |
| TGCATAGGAGGCCTATCACC+GGG | + | Chr5:71293953-71293972 | MsG0580027930.01.T01:CDS | 55.0% | |
| TGCCCAAATGTGTAGGCCAG+GGG | + | Chr5:71293351-71293370 | MsG0580027930.01.T01:CDS | 55.0% | |
| TGCCTCTGCAGCAAACTCAG+CGG | - | Chr5:71293929-71293948 | None:intergenic | 55.0% | |
| ! | AGAGGCCCATGCCTTTGGAA+TGG | - | Chr5:71293422-71293441 | None:intergenic | 55.0% |
| ! | CAGAGGCACAGATGCATAGG+AGG | + | Chr5:71293941-71293960 | MsG0580027930.01.T01:CDS | 55.0% |
| ! | CTGCAGAGGCACAGATGCAT+AGG | + | Chr5:71293938-71293957 | MsG0580027930.01.T01:CDS | 55.0% |
| ! | TCATGTGGGTTAACCGTCCG+AGG | + | Chr5:71293899-71293918 | MsG0580027930.01.T01:CDS | 55.0% |
| ! | TGCTGCTGTGGTGATGCTTC+AGG | - | Chr5:71293760-71293779 | None:intergenic | 55.0% |
| !! | GAGGCCCATGCCTTTGGAAT+GGG | - | Chr5:71293421-71293440 | None:intergenic | 55.0% |
| ACAGCAGCAGCCACCACAGA+TGG | + | Chr5:71293771-71293790 | MsG0580027930.01.T01:CDS | 60.0% | |
| ACTCAGCGGAGAACCTCGGA+CGG | - | Chr5:71293915-71293934 | None:intergenic | 60.0% | |
| ATCTGTGGTGGCTGCTGCTG+TGG | - | Chr5:71293772-71293791 | None:intergenic | 60.0% | |
| CAGCCACCACAGATGGAGCA+TGG | + | Chr5:71293778-71293797 | MsG0580027930.01.T01:CDS | 60.0% | |
| CCCTCTCCATGCTCCATCTG+TGG | - | Chr5:71293787-71293806 | None:intergenic | 60.0% | |
| CTCCGAACCGCACACTCTTC+CGG | - | Chr5:71293280-71293299 | None:intergenic | 60.0% | |
| TGTGTAGGCCAGGGGCTACA+TGG | + | Chr5:71293359-71293378 | MsG0580027930.01.T01:CDS | 60.0% | |
| ! | AGAGTGTGCGGTTCGGAGAC+TGG | + | Chr5:71293282-71293301 | MsG0580027930.01.T01:CDS | 60.0% |
| ! | CACCGGAAGAGTGTGCGGTT+CGG | + | Chr5:71293275-71293294 | MsG0580027930.01.T01:CDS | 60.0% |
| !! | CTCCGCTGAGTTTGCTGCAG+AGG | + | Chr5:71293924-71293943 | MsG0580027930.01.T01:CDS | 60.0% |
| GATGGGATACCCGGGACTGC+TGG | + | Chr5:71294114-71294133 | MsG0580027930.01.T01:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr5 | gene | 71292848 | 71294170 | 71292848 | ID=MsG0580027930.01;Name=MsG0580027930.01 |
| Chr5 | mRNA | 71292848 | 71294170 | 71292848 | ID=MsG0580027930.01.T01;Parent=MsG0580027930.01;Name=MsG0580027930.01.T01;_AED=0.39;_eAED=0.39;_QI=0|-1|0|1|-1|1|1|0|440 |
| Chr5 | exon | 71292848 | 71294170 | 71292848 | ID=MsG0580027930.01.T01:exon:4892;Parent=MsG0580027930.01.T01 |
| Chr5 | CDS | 71292848 | 71294170 | 71292848 | ID=MsG0580027930.01.T01:cds;Parent=MsG0580027930.01.T01 |
| Gene Sequence |
| Protein sequence |
