Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0780036614.01.T01 | RHN79211.1 | 63.177 | 277 | 76 | 3 | 164 | 437 | 9 | 262 | 3.11E-121 | 363 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0780036614.01.T01 | A0A396JR61 | 63.177 | 277 | 76 | 3 | 164 | 437 | 9 | 262 | 1.48e-121 | 363 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0380013883.01 | MsG0780036614.01 | 0.811175 | 7.985829e-51 | 4.908973e-48 |
| MsG0380013896.01 | MsG0780036614.01 | 0.801744 | 7.793022e-49 | 3.750423e-46 |
| MsG0380014977.01 | MsG0780036614.01 | 0.803995 | 2.670972e-49 | 1.361644e-46 |
| MsG0580027930.01 | MsG0780036614.01 | 0.874517 | 6.348561e-68 | 2.866183e-64 |
| MsG0680035896.01 | MsG0780036614.01 | 0.801604 | 8.326596e-49 | 3.992924e-46 |
| MsG0780036134.01 | MsG0780036614.01 | 0.800986 | 1.113917e-48 | 5.259813e-46 |
| MsG0780036614.01 | MsG0880044644.01 | 0.828739 | 7.605828e-55 | 7.625598e-52 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0780036614.01.T01 | MTR_0126s0010 | 55.556 | 315 | 125 | 2 | 126 | 437 | 10 | 312 | 6.45e-121 | 355 |
| MsG0780036614.01.T01 | MTR_7g070630 | 47.396 | 384 | 174 | 5 | 44 | 415 | 44 | 411 | 1.25e-113 | 341 |
| MsG0780036614.01.T01 | MTR_3g455890 | 44.811 | 424 | 190 | 5 | 13 | 415 | 4 | 404 | 1.17e-107 | 325 |
| MsG0780036614.01.T01 | MTR_3g080720 | 44.417 | 412 | 203 | 5 | 9 | 413 | 8 | 400 | 1.65e-96 | 296 |
| MsG0780036614.01.T01 | MTR_5g079810 | 46.269 | 335 | 142 | 6 | 95 | 415 | 1 | 311 | 4.78e-90 | 277 |
| MsG0780036614.01.T01 | MTR_1g044605 | 36.364 | 363 | 205 | 10 | 55 | 406 | 36 | 383 | 1.23e-67 | 221 |
| MsG0780036614.01.T01 | MTR_8g469580 | 38.506 | 348 | 187 | 9 | 45 | 381 | 43 | 374 | 7.86e-65 | 216 |
| MsG0780036614.01.T01 | MTR_0084s0060 | 33.738 | 412 | 159 | 6 | 4 | 415 | 9 | 306 | 2.12e-62 | 205 |
| MsG0780036614.01.T01 | MTR_8g056180 | 34.091 | 352 | 203 | 11 | 95 | 432 | 1 | 337 | 8.48e-55 | 186 |
| MsG0780036614.01.T01 | MTR_6g065960 | 55.063 | 158 | 58 | 4 | 103 | 247 | 41 | 198 | 2.44e-46 | 162 |
| MsG0780036614.01.T01 | MTR_1g052090 | 28.354 | 395 | 212 | 10 | 45 | 432 | 28 | 358 | 5.25e-45 | 160 |
| MsG0780036614.01.T01 | MTR_6g463930 | 27.820 | 399 | 236 | 10 | 1 | 392 | 1 | 354 | 5.31e-36 | 138 |
| MsG0780036614.01.T01 | MTR_6g088860 | 35.514 | 214 | 128 | 5 | 95 | 299 | 1 | 213 | 8.32e-33 | 124 |
| MsG0780036614.01.T01 | MTR_6g466450 | 35.514 | 214 | 128 | 5 | 95 | 299 | 1 | 213 | 8.32e-33 | 124 |
| MsG0780036614.01.T01 | MTR_5g095330 | 30.627 | 271 | 152 | 9 | 13 | 263 | 3 | 257 | 1.08e-26 | 108 |
| MsG0780036614.01.T01 | MTR_5g039510 | 34.595 | 185 | 107 | 6 | 87 | 261 | 40 | 220 | 5.89e-23 | 100 |
| MsG0780036614.01.T01 | MTR_5g095400 | 29.851 | 268 | 158 | 9 | 13 | 266 | 267 | 518 | 8.75e-23 | 101 |
| MsG0780036614.01.T01 | MTR_5g095430 | 31.604 | 212 | 128 | 7 | 64 | 263 | 300 | 506 | 1.11e-22 | 100 |
| MsG0780036614.01.T01 | MTR_5g095310 | 33.939 | 165 | 88 | 5 | 107 | 253 | 201 | 362 | 9.95e-19 | 87.8 |
| MsG0780036614.01.T01 | MTR_5g039515 | 33.146 | 178 | 104 | 6 | 107 | 272 | 4 | 178 | 4.33e-17 | 82.4 |
| MsG0780036614.01.T01 | MTR_5g095270 | 33.735 | 166 | 89 | 5 | 100 | 258 | 26 | 177 | 1.74e-16 | 77.4 |
| MsG0780036614.01.T01 | MTR_6g023550 | 32.022 | 178 | 94 | 5 | 84 | 246 | 160 | 325 | 2.07e-16 | 80.5 |
| MsG0780036614.01.T01 | MTR_4g027155 | 26.389 | 216 | 134 | 7 | 33 | 234 | 8 | 212 | 4.09e-12 | 67.8 |
| MsG0780036614.01.T01 | MTR_8g009850 | 25.316 | 237 | 131 | 7 | 55 | 284 | 175 | 372 | 1.07e-11 | 66.6 |
| MsG0780036614.01.T01 | MTR_7g105490 | 24.074 | 270 | 164 | 8 | 162 | 419 | 27 | 267 | 2.22e-11 | 64.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 132 sgRNAs with CRISPR-Local
Find 145 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TAGCCCCTGGCCTACACATT+TGG | 0.305734 | 7:-10657296 | None:intergenic |
| TGGTGATGATGATGTGGATA+TGG | 0.310469 | 7:+10658076 | MsG0780036614.01.T01:CDS |
| GGCATGGGAGCATGATTAAT+TGG | 0.311432 | 7:+10657544 | MsG0780036614.01.T01:CDS |
| AAGGGTAGCAAGTCAGTCTA+TGG | 0.322784 | 7:+10657522 | MsG0780036614.01.T01:CDS |
| TGCTGCTGTGGTGATGCTTC+AGG | 0.333152 | 7:-10657699 | None:intergenic |
| TTAGAAGGTGGTTGTTGTTT+GGG | 0.333161 | 7:-10656796 | None:intergenic |
| CTCCGAACCGCACACTCTTC+CGG | 0.351371 | 7:-10657219 | None:intergenic |
| TTTAGAAGGTGGTTGTTGTT+TGG | 0.351872 | 7:-10656797 | None:intergenic |
| CGGTTCGTTTGCGTTTGTTT+TGG | 0.352640 | 7:-10656876 | None:intergenic |
| ACATGTTCAGTTCTGCTAAC+TGG | 0.368410 | 7:+10657799 | MsG0780036614.01.T01:CDS |
| GACTTCTTTGATGGGATACC+CGG | 0.379874 | 7:+10658047 | MsG0780036614.01.T01:CDS |
| GCCTATCACTGACAAGACTA+TGG | 0.383761 | 7:+10657626 | MsG0780036614.01.T01:CDS |
| TGACAAGTCTAGGGAGTCTA+TGG | 0.383982 | 7:+10657932 | MsG0780036614.01.T01:CDS |
| GATGCTGATGACTTCTTTGA+TGG | 0.388623 | 7:+10658038 | MsG0780036614.01.T01:CDS |
| TGACGGGTCAATGGTTTAGA+AGG | 0.390897 | 7:-10656811 | None:intergenic |
| CTTGCCCAAATGTGTAGGCC+AGG | 0.391215 | 7:+10657291 | MsG0780036614.01.T01:CDS |
| CTATGCAAACGCTCGTTTCA+CGG | 0.395920 | 7:+10657113 | MsG0780036614.01.T01:CDS |
| AGAGTGTGCGGTTCGGAGAC+TGG | 0.396254 | 7:+10657224 | MsG0780036614.01.T01:CDS |
| CTGCTATAAACAATTTGCTT+GGG | 0.401942 | 7:+10657187 | MsG0780036614.01.T01:CDS |
| AGCCCCTGGCCTACACATTT+GGG | 0.405915 | 7:-10657295 | None:intergenic |
| ACAAAAGAGGCCCATGCCTT+TGG | 0.410864 | 7:-10657366 | None:intergenic |
| AGCAAATTGTTTATAGCAGC+AGG | 0.412969 | 7:-10657183 | None:intergenic |
| TCTAGAACCATAGGATGAAC+TGG | 0.414705 | 7:-10657774 | None:intergenic |
| TCTTAGGCTTGGATTGTTGA+CGG | 0.422359 | 7:-10656828 | None:intergenic |
| ATCTGTGGTGGCTGCTGCTG+TGG | 0.422722 | 7:-10657711 | None:intergenic |
| TGCGATCATATGAATGTTGT+TGG | 0.423548 | 7:-10657499 | None:intergenic |
| TCCCACCAACAAACGTTAAC+CGG | 0.428891 | 7:+10656902 | MsG0780036614.01.T01:CDS |
| TTACCCTCCAGTTCATCCTA+TGG | 0.445154 | 7:+10657767 | MsG0780036614.01.T01:CDS |
| CTTGTCAGTGATAGGCTTTG+TGG | 0.447222 | 7:-10657619 | None:intergenic |
| CTCTCATAAGACCCGGTGAT+AGG | 0.449163 | 7:-10657906 | None:intergenic |
| ATGAACCGGTTAACGTTTGT+TGG | 0.452223 | 7:-10656907 | None:intergenic |
| ATTCAGCATAAGTCAACATC+CGG | 0.454165 | 7:-10657332 | None:intergenic |
| ACAGCAGCAGCCACCACAGA+TGG | 0.454342 | 7:+10657713 | MsG0780036614.01.T01:CDS |
| ACAGATTTGTTATTCTCTTC+CGG | 0.456096 | 7:-10657078 | None:intergenic |
| CAATGCTTCGTGAGAGAGGA+TGG | 0.459561 | 7:+10657034 | MsG0780036614.01.T01:CDS |
| AAACCACGCTCTAGCATCTT+CGG | 0.460440 | 7:-10656932 | None:intergenic |
| GCTGCTATAAACAATTTGCT+TGG | 0.465403 | 7:+10657186 | MsG0780036614.01.T01:CDS |
| ATCACTGATGATTTCGAGGC+AGG | 0.465692 | 7:+10658005 | MsG0780036614.01.T01:CDS |
| GGAGAGGGTAGTAGTCAGTA+TGG | 0.469549 | 7:+10657741 | MsG0780036614.01.T01:CDS |
| GCTTTCTTCCATGTAGCCCC+TGG | 0.470874 | 7:-10657309 | None:intergenic |
| CGAAGCATTGTGTCAAAGAC+TGG | 0.471791 | 7:-10657021 | None:intergenic |
| AGAGGCCCATGCCTTTGGTA+TGG | 0.471840 | 7:-10657361 | None:intergenic |
| CTCCGCTGAGTTTGCTGCAG+AGG | 0.472577 | 7:+10657866 | MsG0780036614.01.T01:CDS |
| CTTAGGCTTGGATTGTTGAC+GGG | 0.474259 | 7:-10656827 | None:intergenic |
| ATGAGAGGTTTGACAAGTCT+AGG | 0.474360 | 7:+10657922 | MsG0780036614.01.T01:CDS |
| TTGCCCAAATGTGTAGGCCA+GGG | 0.474952 | 7:+10657292 | MsG0780036614.01.T01:CDS |
| GATGCTGGTGTTAGAATTTG+AGG | 0.475700 | 7:+10657578 | MsG0780036614.01.T01:CDS |
| ATCATCATCACCAGCAGTCC+CGG | 0.475982 | 7:-10658066 | None:intergenic |
| TTGGATTGTTGACGGGTCAA+TGG | 0.479641 | 7:-10656820 | None:intergenic |
| TGAAAGCAGCATATCGCTCT+TGG | 0.488614 | 7:-10657971 | None:intergenic |
| TGTGTAGGCCAGGGGCTACA+TGG | 0.496253 | 7:+10657301 | MsG0780036614.01.T01:CDS |
| TAGCATCTTCGGAAATGAAC+CGG | 0.497434 | 7:-10656921 | None:intergenic |
| CACCGGAAGAGTGTGCGGTT+CGG | 0.498152 | 7:+10657217 | MsG0780036614.01.T01:CDS |
| TCCATAGTCTTGTCAGTGAT+AGG | 0.499167 | 7:-10657627 | None:intergenic |
| GCGTGGTTTGATTATTGCAA+GGG | 0.510127 | 7:+10656946 | MsG0780036614.01.T01:CDS |
| GAATAACAAATCTGTGGTGA+TGG | 0.511957 | 7:+10657086 | MsG0780036614.01.T01:CDS |
| AGCAAGTCAGTCTATGGGCA+TGG | 0.517415 | 7:+10657528 | MsG0780036614.01.T01:CDS |
| AACATTCATATGATCGCAAA+GGG | 0.519803 | 7:+10657504 | MsG0780036614.01.T01:CDS |
| GATGGGATACCCGGGACTGC+TGG | 0.521770 | 7:+10658056 | MsG0780036614.01.T01:CDS |
| GAGGCCCATGCCTTTGGTAT+GGG | 0.522834 | 7:-10657360 | None:intergenic |
| AACCGGTTAACGTTTGTTGG+TGG | 0.525562 | 7:-10656904 | None:intergenic |
| GGTGATGATGATGTGGATAT+GGG | 0.526917 | 7:+10658077 | MsG0780036614.01.T01:CDS |
| TGATGATGTGGATATGGGAC+TGG | 0.528108 | 7:+10658082 | MsG0780036614.01.T01:CDS |
| AAAGTTGGGGTGATGATCGA+TGG | 0.531489 | 7:+10657259 | MsG0780036614.01.T01:CDS |
| CTGCAGAGGCACAGATGCAT+AGG | 0.534655 | 7:+10657880 | MsG0780036614.01.T01:CDS |
| TTTGCCCATACCAAAGGCAT+GGG | 0.535169 | 7:+10657356 | MsG0780036614.01.T01:CDS |
| CCCTCTCCATGCTCCATCTG+TGG | 0.536326 | 7:-10657726 | None:intergenic |
| GGGCTACATGGAAGAAAGCC+CGG | 0.536861 | 7:+10657313 | MsG0780036614.01.T01:CDS |
| GGAGATCACTGATGATTTCG+AGG | 0.539074 | 7:+10658001 | MsG0780036614.01.T01:CDS |
| CGGGTCAATGGTTTAGAAGG+TGG | 0.540000 | 7:-10656808 | None:intergenic |
| TGAGAGGTTTGACAAGTCTA+GGG | 0.544498 | 7:+10657923 | MsG0780036614.01.T01:CDS |
| ACCGGTTAACGTTTGTTGGT+GGG | 0.546470 | 7:-10656903 | None:intergenic |
| GTTAACGTTTGTTGGTGGGA+CGG | 0.548429 | 7:-10656899 | None:intergenic |
| CAGCCACCACAGATGGAGCA+TGG | 0.549449 | 7:+10657720 | MsG0780036614.01.T01:CDS |
| ATATGCTGCTTTCATGAAGA+AGG | 0.551879 | 7:+10657980 | MsG0780036614.01.T01:CDS |
| ATGCATAGGAGGCCTATCAC+CGG | 0.552390 | 7:+10657894 | MsG0780036614.01.T01:CDS |
| GATCAACAACACATAAATGT+TGG | 0.552822 | 7:+10657465 | MsG0780036614.01.T01:CDS |
| AGCGTGGTTTGATTATTGCA+AGG | 0.554170 | 7:+10656945 | MsG0780036614.01.T01:CDS |
| AAGCGTCTGAATAACAAAAG+AGG | 0.556805 | 7:-10657379 | None:intergenic |
| GCAAACTCAGCGGAGAACCT+CGG | 0.557568 | 7:-10657858 | None:intergenic |
| TGATTTCGAGGCAGGAGAGA+AGG | 0.560864 | 7:+10658013 | MsG0780036614.01.T01:CDS |
| CAGAGGCACAGATGCATAGG+AGG | 0.562785 | 7:+10657883 | MsG0780036614.01.T01:CDS |
| CCACAGATGGAGCATGGAGA+GGG | 0.563293 | 7:+10657726 | MsG0780036614.01.T01:CDS |
| TTGGCTAGATGAAGGTTGGG+TGG | 0.569408 | 7:-10656857 | None:intergenic |
| TTTGCTTGGGTTAATTGCAC+CGG | 0.572306 | 7:+10657200 | MsG0780036614.01.T01:CDS |
| TCAGTGATAGGCTTTGTGGT+AGG | 0.575271 | 7:-10657615 | None:intergenic |
| GACACAATGCTTCGTGAGAG+AGG | 0.580044 | 7:+10657030 | MsG0780036614.01.T01:CDS |
| TCATCATCACCAGCAGTCCC+GGG | 0.580476 | 7:-10658065 | None:intergenic |
| GCAAGTCAGTCTATGGGCAT+GGG | 0.580666 | 7:+10657529 | MsG0780036614.01.T01:CDS |
| AATATCAATCCTACGTTCGA+GGG | 0.584558 | 7:+10657142 | MsG0780036614.01.T01:CDS |
| TGCATAGGAGGCCTATCACC+GGG | 0.585016 | 7:+10657895 | MsG0780036614.01.T01:CDS |
| CAACATTCATATGATCGCAA+AGG | 0.585107 | 7:+10657503 | MsG0780036614.01.T01:CDS |
| AAATATCAATCCTACGTTCG+AGG | 0.585399 | 7:+10657141 | MsG0780036614.01.T01:CDS |
| GATTATATGCGGAGGAGAAG+CGG | 0.595654 | 7:+10657672 | MsG0780036614.01.T01:CDS |
| TCAATCCTACGTTCGAGGGA+AGG | 0.596358 | 7:+10657146 | MsG0780036614.01.T01:CDS |
| AGAGTTGAACAACATGGTAC+CGG | 0.599561 | 7:+10657059 | MsG0780036614.01.T01:CDS |
| ATGCTGGTGTTAGAATTTGA+GGG | 0.599616 | 7:+10657579 | MsG0780036614.01.T01:CDS |
| TCTCCATGCTCCATCTGTGG+TGG | 0.599890 | 7:-10657723 | None:intergenic |
| CTATCACCGGGTCTTATGAG+AGG | 0.599958 | 7:+10657907 | MsG0780036614.01.T01:CDS |
| AGGGTAGCAAGTCAGTCTAT+GGG | 0.600699 | 7:+10657523 | MsG0780036614.01.T01:CDS |
| ACAGTGAGTACTCGCTTGAG+AGG | 0.603154 | 7:-10657429 | None:intergenic |
| ATGCTGATGACTTCTTTGAT+GGG | 0.605977 | 7:+10658039 | MsG0780036614.01.T01:CDS |
| TCATGTGGGTTAACCGTCCG+AGG | 0.607395 | 7:+10657841 | MsG0780036614.01.T01:CDS |
| AACGTTTGTTGGTGGGACGG+CGG | 0.610711 | 7:-10656896 | None:intergenic |
| TTCAGCATAAGTCAACATCC+GGG | 0.614657 | 7:-10657331 | None:intergenic |
| TATCACCTTCCCTCGAACGT+AGG | 0.616562 | 7:-10657151 | None:intergenic |
| AACATGTACTCTAGAACCAT+AGG | 0.616667 | 7:-10657783 | None:intergenic |
| ATGAGACCTCTGATCTCATG+TGG | 0.619170 | 7:+10657826 | MsG0780036614.01.T01:CDS |
| ACCACAGATGGAGCATGGAG+AGG | 0.622954 | 7:+10657725 | MsG0780036614.01.T01:CDS |
| TGCCCAAATGTGTAGGCCAG+GGG | 0.623210 | 7:+10657293 | MsG0780036614.01.T01:CDS |
| GACTGCTGGTGATGATGATG+TGG | 0.627749 | 7:+10658070 | MsG0780036614.01.T01:CDS |
| GTCAAACCTCTCATAAGACC+CGG | 0.632159 | 7:-10657913 | None:intergenic |
| TTGGCTATGTGAGAAGATGC+TGG | 0.636998 | 7:+10657563 | MsG0780036614.01.T01:CDS |
| AGTTGCTTGCCCAAATGTGT+AGG | 0.641144 | 7:+10657286 | MsG0780036614.01.T01:CDS |
| AATTGCACCGGAAGAGTGTG+CGG | 0.641585 | 7:+10657212 | MsG0780036614.01.T01:CDS |
| ACTTCTTTGATGGGATACCC+GGG | 0.642798 | 7:+10658048 | MsG0780036614.01.T01:CDS |
| AAGTTGGGGTGATGATCGAT+GGG | 0.645680 | 7:+10657260 | MsG0780036614.01.T01:CDS |
| AATGCTTCGTGAGAGAGGAT+GGG | 0.650431 | 7:+10657035 | MsG0780036614.01.T01:CDS |
| GGAAGAGAATAACAAATCTG+TGG | 0.651199 | 7:+10657080 | MsG0780036614.01.T01:CDS |
| AGAACCATAGGATGAACTGG+AGG | 0.665899 | 7:-10657771 | None:intergenic |
| TGCCTCTGCAGCAAACTCAG+CGG | 0.675090 | 7:-10657868 | None:intergenic |
| GAACCATAGGATGAACTGGA+GGG | 0.675620 | 7:-10657770 | None:intergenic |
| AAAAGTACGCGGATTATATG+CGG | 0.686913 | 7:+10657661 | MsG0780036614.01.T01:CDS |
| GTTAACCCACATGAGATCAG+AGG | 0.698010 | 7:-10657832 | None:intergenic |
| TTTCCGAAGATGCTAGAGCG+TGG | 0.700500 | 7:+10656929 | MsG0780036614.01.T01:CDS |
| AGTACGCGGATTATATGCGG+AGG | 0.706428 | 7:+10657664 | MsG0780036614.01.T01:CDS |
| ACTCAGCGGAGAACCTCGGA+CGG | 0.706523 | 7:-10657854 | None:intergenic |
| GGGAGAACGAAAATTTGATG+TGG | 0.711063 | 7:+10656981 | MsG0780036614.01.T01:CDS |
| TGAGACCTCTGATCTCATGT+GGG | 0.715752 | 7:+10657827 | MsG0780036614.01.T01:CDS |
| ATGGGAAGAGTTGAACAACA+TGG | 0.730778 | 7:+10657053 | MsG0780036614.01.T01:CDS |
| TCGCTTGAGAGGAATCTCAG+AGG | 0.759702 | 7:-10657418 | None:intergenic |
| GATATGGGACTGGATCACTG+AGG | 0.865994 | 7:+10658092 | MsG0780036614.01.T01:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| AACATTCATATGATCGCAAA+GGG | + | Chr7:10657504-10657523 | MsG0780036614.01.T01:CDS | 30.0% | |
| GATCAACAACACATAAATGT+TGG | + | Chr7:10657465-10657484 | MsG0780036614.01.T01:CDS | 30.0% | |
| ! | CTGCTATAAACAATTTGCTT+GGG | + | Chr7:10657187-10657206 | MsG0780036614.01.T01:CDS | 30.0% |
| !! | ACAGATTTGTTATTCTCTTC+CGG | - | Chr7:10657081-10657100 | None:intergenic | 30.0% |
| AAATATCAATCCTACGTTCG+AGG | + | Chr7:10657141-10657160 | MsG0780036614.01.T01:CDS | 35.0% | |
| AAGCGTCTGAATAACAAAAG+AGG | - | Chr7:10657382-10657401 | None:intergenic | 35.0% | |
| AATATCAATCCTACGTTCGA+GGG | + | Chr7:10657142-10657161 | MsG0780036614.01.T01:CDS | 35.0% | |
| AGCAAATTGTTTATAGCAGC+AGG | - | Chr7:10657186-10657205 | None:intergenic | 35.0% | |
| ATGCTGATGACTTCTTTGAT+GGG | + | Chr7:10658039-10658058 | MsG0780036614.01.T01:CDS | 35.0% | |
| ATTCAGCATAAGTCAACATC+CGG | - | Chr7:10657335-10657354 | None:intergenic | 35.0% | |
| CAACATTCATATGATCGCAA+AGG | + | Chr7:10657503-10657522 | MsG0780036614.01.T01:CDS | 35.0% | |
| GAATAACAAATCTGTGGTGA+TGG | + | Chr7:10657086-10657105 | MsG0780036614.01.T01:CDS | 35.0% | |
| GGAAGAGAATAACAAATCTG+TGG | + | Chr7:10657080-10657099 | MsG0780036614.01.T01:CDS | 35.0% | |
| TGCGATCATATGAATGTTGT+TGG | - | Chr7:10657502-10657521 | None:intergenic | 35.0% | |
| ! | AAAAGTACGCGGATTATATG+CGG | + | Chr7:10657661-10657680 | MsG0780036614.01.T01:CDS | 35.0% |
| ! | ATGCTGGTGTTAGAATTTGA+GGG | + | Chr7:10657579-10657598 | MsG0780036614.01.T01:CDS | 35.0% |
| ! | GCTGCTATAAACAATTTGCT+TGG | + | Chr7:10657186-10657205 | MsG0780036614.01.T01:CDS | 35.0% |
| ! | TGAATTTTTGCCCATACCAA+AGG | + | Chr7:10657350-10657369 | MsG0780036614.01.T01:CDS | 35.0% |
| ! | TGTCTTGATGAAAAAGTACG+CGG | + | Chr7:10657650-10657669 | MsG0780036614.01.T01:CDS | 35.0% |
| ! | TTTAGAAGGTGGTTGTTGTT+TGG | - | Chr7:10656800-10656819 | None:intergenic | 35.0% |
| !! | AACATGTACTCTAGAACCAT+AGG | - | Chr7:10657786-10657805 | None:intergenic | 35.0% |
| !! | ATATGCTGCTTTCATGAAGA+AGG | + | Chr7:10657980-10657999 | MsG0780036614.01.T01:CDS | 35.0% |
| !! | TTAGAAGGTGGTTGTTGTTT+GGG | - | Chr7:10656799-10656818 | None:intergenic | 35.0% |
| !!! | TTATTGCAAGGGTTTTGAAG+TGG | + | Chr7:10656957-10656976 | MsG0780036614.01.T01:CDS | 35.0% |
| ACATGTTCAGTTCTGCTAAC+TGG | + | Chr7:10657799-10657818 | MsG0780036614.01.T01:CDS | 40.0% | |
| AGAGTTGAACAACATGGTAC+CGG | + | Chr7:10657059-10657078 | MsG0780036614.01.T01:CDS | 40.0% | |
| AGCGTGGTTTGATTATTGCA+AGG | + | Chr7:10656945-10656964 | MsG0780036614.01.T01:CDS | 40.0% | |
| ATGAACCGGTTAACGTTTGT+TGG | - | Chr7:10656910-10656929 | None:intergenic | 40.0% | |
| ATGAGAGGTTTGACAAGTCT+AGG | + | Chr7:10657922-10657941 | MsG0780036614.01.T01:CDS | 40.0% | |
| ATGGGAAGAGTTGAACAACA+TGG | + | Chr7:10657053-10657072 | MsG0780036614.01.T01:CDS | 40.0% | |
| GATGCTGATGACTTCTTTGA+TGG | + | Chr7:10658038-10658057 | MsG0780036614.01.T01:CDS | 40.0% | |
| GCGTGGTTTGATTATTGCAA+GGG | + | Chr7:10656946-10656965 | MsG0780036614.01.T01:CDS | 40.0% | |
| GGGAGAACGAAAATTTGATG+TGG | + | Chr7:10656981-10657000 | MsG0780036614.01.T01:CDS | 40.0% | |
| TAGCATCTTCGGAAATGAAC+CGG | - | Chr7:10656924-10656943 | None:intergenic | 40.0% | |
| TCTTAGGCTTGGATTGTTGA+CGG | - | Chr7:10656831-10656850 | None:intergenic | 40.0% | |
| TGAGAGGTTTGACAAGTCTA+GGG | + | Chr7:10657923-10657942 | MsG0780036614.01.T01:CDS | 40.0% | |
| TTCAGCATAAGTCAACATCC+GGG | - | Chr7:10657334-10657353 | None:intergenic | 40.0% | |
| TTTGCTTGGGTTAATTGCAC+CGG | + | Chr7:10657200-10657219 | MsG0780036614.01.T01:CDS | 40.0% | |
| ! | GATGCTGGTGTTAGAATTTG+AGG | + | Chr7:10657578-10657597 | MsG0780036614.01.T01:CDS | 40.0% |
| ! | GGTGATGATGATGTGGATAT+GGG | + | Chr7:10658077-10658096 | MsG0780036614.01.T01:CDS | 40.0% |
| ! | TCTAGAACCATAGGATGAAC+TGG | - | Chr7:10657777-10657796 | None:intergenic | 40.0% |
| ! | TGGTGATGATGATGTGGATA+TGG | + | Chr7:10658076-10658095 | MsG0780036614.01.T01:CDS | 40.0% |
| !! | TCCATAGTCTTGTCAGTGAT+AGG | - | Chr7:10657630-10657649 | None:intergenic | 40.0% |
| !!! | CGTTTGTTTTGGCTAGATGA+AGG | - | Chr7:10656868-10656887 | None:intergenic | 40.0% |
| !!! | GTTTTGGCTAGATGAAGGTT+GGG | - | Chr7:10656863-10656882 | None:intergenic | 40.0% |
| !!! | TGTTTTGGCTAGATGAAGGT+TGG | - | Chr7:10656864-10656883 | None:intergenic | 40.0% |
| AAACCACGCTCTAGCATCTT+CGG | - | Chr7:10656935-10656954 | None:intergenic | 45.0% | |
| AAAGTTGGGGTGATGATCGA+TGG | + | Chr7:10657259-10657278 | MsG0780036614.01.T01:CDS | 45.0% | |
| AAGGGTAGCAAGTCAGTCTA+TGG | + | Chr7:10657522-10657541 | MsG0780036614.01.T01:CDS | 45.0% | |
| AAGTTGGGGTGATGATCGAT+GGG | + | Chr7:10657260-10657279 | MsG0780036614.01.T01:CDS | 45.0% | |
| AATGCTTCGTGAGAGAGGAT+GGG | + | Chr7:10657035-10657054 | MsG0780036614.01.T01:CDS | 45.0% | |
| ACTTCTTTGATGGGATACCC+GGG | + | Chr7:10658048-10658067 | MsG0780036614.01.T01:CDS | 45.0% | |
| AGAACCATAGGATGAACTGG+AGG | - | Chr7:10657774-10657793 | None:intergenic | 45.0% | |
| AGGGTAGCAAGTCAGTCTAT+GGG | + | Chr7:10657523-10657542 | MsG0780036614.01.T01:CDS | 45.0% | |
| AGTTGCTTGCCCAAATGTGT+AGG | + | Chr7:10657286-10657305 | MsG0780036614.01.T01:CDS | 45.0% | |
| ATCACTGATGATTTCGAGGC+AGG | + | Chr7:10658005-10658024 | MsG0780036614.01.T01:CDS | 45.0% | |
| ATGAGACCTCTGATCTCATG+TGG | + | Chr7:10657826-10657845 | MsG0780036614.01.T01:CDS | 45.0% | |
| CTATGCAAACGCTCGTTTCA+CGG | + | Chr7:10657113-10657132 | MsG0780036614.01.T01:CDS | 45.0% | |
| CTTAGGCTTGGATTGTTGAC+GGG | - | Chr7:10656830-10656849 | None:intergenic | 45.0% | |
| CTTGTCAGTGATAGGCTTTG+TGG | - | Chr7:10657622-10657641 | None:intergenic | 45.0% | |
| GAACCATAGGATGAACTGGA+GGG | - | Chr7:10657773-10657792 | None:intergenic | 45.0% | |
| GACTTCTTTGATGGGATACC+CGG | + | Chr7:10658047-10658066 | MsG0780036614.01.T01:CDS | 45.0% | |
| GAGCGTGAAGCAAAAAGTTG+GGG | + | Chr7:10657246-10657265 | MsG0780036614.01.T01:CDS | 45.0% | |
| GATTATATGCGGAGGAGAAG+CGG | + | Chr7:10657672-10657691 | MsG0780036614.01.T01:CDS | 45.0% | |
| GCCTATCACTGACAAGACTA+TGG | + | Chr7:10657626-10657645 | MsG0780036614.01.T01:CDS | 45.0% | |
| GGAGATCACTGATGATTTCG+AGG | + | Chr7:10658001-10658020 | MsG0780036614.01.T01:CDS | 45.0% | |
| GGAGCGTGAAGCAAAAAGTT+GGG | + | Chr7:10657245-10657264 | MsG0780036614.01.T01:CDS | 45.0% | |
| GTCAAACCTCTCATAAGACC+CGG | - | Chr7:10657916-10657935 | None:intergenic | 45.0% | |
| GTTAACCCACATGAGATCAG+AGG | - | Chr7:10657835-10657854 | None:intergenic | 45.0% | |
| TCCCACCAACAAACGTTAAC+CGG | + | Chr7:10656902-10656921 | MsG0780036614.01.T01:CDS | 45.0% | |
| TGAAAGCAGCATATCGCTCT+TGG | - | Chr7:10657974-10657993 | None:intergenic | 45.0% | |
| TGACAAGTCTAGGGAGTCTA+TGG | + | Chr7:10657932-10657951 | MsG0780036614.01.T01:CDS | 45.0% | |
| TGAGACCTCTGATCTCATGT+GGG | + | Chr7:10657827-10657846 | MsG0780036614.01.T01:CDS | 45.0% | |
| TGGAGCGTGAAGCAAAAAGT+TGG | + | Chr7:10657244-10657263 | MsG0780036614.01.T01:CDS | 45.0% | |
| TTACCCTCCAGTTCATCCTA+TGG | + | Chr7:10657767-10657786 | MsG0780036614.01.T01:CDS | 45.0% | |
| TTGGCTATGTGAGAAGATGC+TGG | + | Chr7:10657563-10657582 | MsG0780036614.01.T01:CDS | 45.0% | |
| ! | AACCGGTTAACGTTTGTTGG+TGG | - | Chr7:10656907-10656926 | None:intergenic | 45.0% |
| ! | ACCGGTTAACGTTTGTTGGT+GGG | - | Chr7:10656906-10656925 | None:intergenic | 45.0% |
| ! | CGGTTCGTTTGCGTTTGTTT+TGG | - | Chr7:10656879-10656898 | None:intergenic | 45.0% |
| ! | GGCATGGGAGCATGATTAAT+TGG | + | Chr7:10657544-10657563 | MsG0780036614.01.T01:CDS | 45.0% |
| ! | GTTAACGTTTGTTGGTGGGA+CGG | - | Chr7:10656902-10656921 | None:intergenic | 45.0% |
| ! | TCAGTGATAGGCTTTGTGGT+AGG | - | Chr7:10657618-10657637 | None:intergenic | 45.0% |
| ! | TGACGGGTCAATGGTTTAGA+AGG | - | Chr7:10656814-10656833 | None:intergenic | 45.0% |
| ! | TGATGATGTGGATATGGGAC+TGG | + | Chr7:10658082-10658101 | MsG0780036614.01.T01:CDS | 45.0% |
| ! | TTGGATTGTTGACGGGTCAA+TGG | - | Chr7:10656823-10656842 | None:intergenic | 45.0% |
| ! | TTTGCCCATACCAAAGGCAT+GGG | + | Chr7:10657356-10657375 | MsG0780036614.01.T01:CDS | 45.0% |
| ! | TTTTGCCCATACCAAAGGCA+TGG | + | Chr7:10657355-10657374 | MsG0780036614.01.T01:CDS | 45.0% |
| !! | CGAAGCATTGTGTCAAAGAC+TGG | - | Chr7:10657024-10657043 | None:intergenic | 45.0% |
| !! | GGTGGTTGTTTTCTTAGGCT+TGG | - | Chr7:10656842-10656861 | None:intergenic | 45.0% |
| !! | GGTTGGGTGGTTGTTTTCTT+AGG | - | Chr7:10656847-10656866 | None:intergenic | 45.0% |
| !!! | TGCAAGGGTTTTGAAGTGGT+GGG | + | Chr7:10656961-10656980 | MsG0780036614.01.T01:CDS | 45.0% |
| !!! | TTGCAAGGGTTTTGAAGTGG+TGG | + | Chr7:10656960-10656979 | MsG0780036614.01.T01:CDS | 45.0% |
| ACAAAAGAGGCCCATGCCTT+TGG | - | Chr7:10657369-10657388 | None:intergenic | 50.0% | |
| ACAGTGAGTACTCGCTTGAG+AGG | - | Chr7:10657432-10657451 | None:intergenic | 50.0% | |
| AGCAAGTCAGTCTATGGGCA+TGG | + | Chr7:10657528-10657547 | MsG0780036614.01.T01:CDS | 50.0% | |
| ATCATCATCACCAGCAGTCC+CGG | - | Chr7:10658069-10658088 | None:intergenic | 50.0% | |
| ATGCATAGGAGGCCTATCAC+CGG | + | Chr7:10657894-10657913 | MsG0780036614.01.T01:CDS | 50.0% | |
| CAATGCTTCGTGAGAGAGGA+TGG | + | Chr7:10657034-10657053 | MsG0780036614.01.T01:CDS | 50.0% | |
| CGGGTCAATGGTTTAGAAGG+TGG | - | Chr7:10656811-10656830 | None:intergenic | 50.0% | |
| CTCTCATAAGACCCGGTGAT+AGG | - | Chr7:10657909-10657928 | None:intergenic | 50.0% | |
| GACACAATGCTTCGTGAGAG+AGG | + | Chr7:10657030-10657049 | MsG0780036614.01.T01:CDS | 50.0% | |
| GCAAGTCAGTCTATGGGCAT+GGG | + | Chr7:10657529-10657548 | MsG0780036614.01.T01:CDS | 50.0% | |
| GGAGAGGGTAGTAGTCAGTA+TGG | + | Chr7:10657741-10657760 | MsG0780036614.01.T01:CDS | 50.0% | |
| TATCACCTTCCCTCGAACGT+AGG | - | Chr7:10657154-10657173 | None:intergenic | 50.0% | |
| TCAATCCTACGTTCGAGGGA+AGG | + | Chr7:10657146-10657165 | MsG0780036614.01.T01:CDS | 50.0% | |
| TCGCTTGAGAGGAATCTCAG+AGG | - | Chr7:10657421-10657440 | None:intergenic | 50.0% | |
| TGATTTCGAGGCAGGAGAGA+AGG | + | Chr7:10658013-10658032 | MsG0780036614.01.T01:CDS | 50.0% | |
| TTGCCCAAATGTGTAGGCCA+GGG | + | Chr7:10657292-10657311 | MsG0780036614.01.T01:CDS | 50.0% | |
| TTGGCTAGATGAAGGTTGGG+TGG | - | Chr7:10656860-10656879 | None:intergenic | 50.0% | |
| TTTCCGAAGATGCTAGAGCG+TGG | + | Chr7:10656929-10656948 | MsG0780036614.01.T01:CDS | 50.0% | |
| ! | AATTGCACCGGAAGAGTGTG+CGG | + | Chr7:10657212-10657231 | MsG0780036614.01.T01:CDS | 50.0% |
| ! | AGTACGCGGATTATATGCGG+AGG | + | Chr7:10657664-10657683 | MsG0780036614.01.T01:CDS | 50.0% |
| ! | CTATCACCGGGTCTTATGAG+AGG | + | Chr7:10657907-10657926 | MsG0780036614.01.T01:CDS | 50.0% |
| ! | GACTGCTGGTGATGATGATG+TGG | + | Chr7:10658070-10658089 | MsG0780036614.01.T01:CDS | 50.0% |
| ACCACAGATGGAGCATGGAG+AGG | + | Chr7:10657725-10657744 | MsG0780036614.01.T01:CDS | 55.0% | |
| AGAGGCCCATGCCTTTGGTA+TGG | - | Chr7:10657364-10657383 | None:intergenic | 55.0% | |
| AGCCCCTGGCCTACACATTT+GGG | - | Chr7:10657298-10657317 | None:intergenic | 55.0% | |
| CCACAGATGGAGCATGGAGA+GGG | + | Chr7:10657726-10657745 | MsG0780036614.01.T01:CDS | 55.0% | |
| CTTGCCCAAATGTGTAGGCC+AGG | + | Chr7:10657291-10657310 | MsG0780036614.01.T01:CDS | 55.0% | |
| GAGGCCCATGCCTTTGGTAT+GGG | - | Chr7:10657363-10657382 | None:intergenic | 55.0% | |
| GCAAACTCAGCGGAGAACCT+CGG | - | Chr7:10657861-10657880 | None:intergenic | 55.0% | |
| GCTTTCTTCCATGTAGCCCC+TGG | - | Chr7:10657312-10657331 | None:intergenic | 55.0% | |
| GGGCTACATGGAAGAAAGCC+CGG | + | Chr7:10657313-10657332 | MsG0780036614.01.T01:CDS | 55.0% | |
| TAGCCCCTGGCCTACACATT+TGG | - | Chr7:10657299-10657318 | None:intergenic | 55.0% | |
| TCATCATCACCAGCAGTCCC+GGG | - | Chr7:10658068-10658087 | None:intergenic | 55.0% | |
| TCTCCATGCTCCATCTGTGG+TGG | - | Chr7:10657726-10657745 | None:intergenic | 55.0% | |
| TGCATAGGAGGCCTATCACC+GGG | + | Chr7:10657895-10657914 | MsG0780036614.01.T01:CDS | 55.0% | |
| TGCCCAAATGTGTAGGCCAG+GGG | + | Chr7:10657293-10657312 | MsG0780036614.01.T01:CDS | 55.0% | |
| TGCCTCTGCAGCAAACTCAG+CGG | - | Chr7:10657871-10657890 | None:intergenic | 55.0% | |
| ! | AACGTTTGTTGGTGGGACGG+CGG | - | Chr7:10656899-10656918 | None:intergenic | 55.0% |
| ! | CAGAGGCACAGATGCATAGG+AGG | + | Chr7:10657883-10657902 | MsG0780036614.01.T01:CDS | 55.0% |
| ! | CTGCAGAGGCACAGATGCAT+AGG | + | Chr7:10657880-10657899 | MsG0780036614.01.T01:CDS | 55.0% |
| ! | TCATGTGGGTTAACCGTCCG+AGG | + | Chr7:10657841-10657860 | MsG0780036614.01.T01:CDS | 55.0% |
| ! | TGCTGCTGTGGTGATGCTTC+AGG | - | Chr7:10657702-10657721 | None:intergenic | 55.0% |
| ACAGCAGCAGCCACCACAGA+TGG | + | Chr7:10657713-10657732 | MsG0780036614.01.T01:CDS | 60.0% | |
| ACTCAGCGGAGAACCTCGGA+CGG | - | Chr7:10657857-10657876 | None:intergenic | 60.0% | |
| ATCTGTGGTGGCTGCTGCTG+TGG | - | Chr7:10657714-10657733 | None:intergenic | 60.0% | |
| CAGCCACCACAGATGGAGCA+TGG | + | Chr7:10657720-10657739 | MsG0780036614.01.T01:CDS | 60.0% | |
| CCCTCTCCATGCTCCATCTG+TGG | - | Chr7:10657729-10657748 | None:intergenic | 60.0% | |
| CTCCGAACCGCACACTCTTC+CGG | - | Chr7:10657222-10657241 | None:intergenic | 60.0% | |
| TGTGTAGGCCAGGGGCTACA+TGG | + | Chr7:10657301-10657320 | MsG0780036614.01.T01:CDS | 60.0% | |
| ! | AGAGTGTGCGGTTCGGAGAC+TGG | + | Chr7:10657224-10657243 | MsG0780036614.01.T01:CDS | 60.0% |
| ! | CACCGGAAGAGTGTGCGGTT+CGG | + | Chr7:10657217-10657236 | MsG0780036614.01.T01:CDS | 60.0% |
| !! | CTCCGCTGAGTTTGCTGCAG+AGG | + | Chr7:10657866-10657885 | MsG0780036614.01.T01:CDS | 60.0% |
| GATGGGATACCCGGGACTGC+TGG | + | Chr7:10658056-10658075 | MsG0780036614.01.T01:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr7 | gene | 10656790 | 10658112 | 10656790 | ID=MsG0780036614.01;Name=MsG0780036614.01 |
| Chr7 | mRNA | 10656790 | 10658112 | 10656790 | ID=MsG0780036614.01.T01;Parent=MsG0780036614.01;Name=MsG0780036614.01.T01;_AED=0.48;_eAED=0.48;_QI=0|-1|0|1|-1|1|1|0|440 |
| Chr7 | exon | 10656790 | 10658112 | 10656790 | ID=MsG0780036614.01.T01:exon:10487;Parent=MsG0780036614.01.T01 |
| Chr7 | CDS | 10656790 | 10658112 | 10656790 | ID=MsG0780036614.01.T01:cds;Parent=MsG0780036614.01.T01 |
| Gene Sequence |
| Protein sequence |
