AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0580028405.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0580028405.01.T01 MTR_5g070310 88.305 590 36 2 1 589 1 558 0.0 996
MsG0580028405.01.T01 MTR_4g116900 25.574 305 192 13 197 497 161 434 4.76e-14 75.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0580028405.01.T01 AT5G58760 66.790 542 138 5 5 541 6 510 0.0 732
MsG0580028405.01.T01 AT5G58760 69.369 444 104 1 98 541 1 412 0.0 656
MsG0580028405.01.T01 AT1G80710 25.291 344 205 14 197 524 209 516 2.42e-17 85.9

Find 146 sgRNAs with CRISPR-Local

Find 338 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CATTCAGTCTGCTTGGATTT+TGG 0.092885 5:-80109882 None:intergenic
CGTATATGGGATTCTATCTT+TGG 0.201004 5:+80108715 MsG0580028405.01.T01:CDS
GGATTCTATCTTTGGTAATA+TGG 0.203494 5:+80108723 MsG0580028405.01.T01:CDS
TCTTCCGTATAGAGAAAATT+TGG 0.235162 5:+80110221 MsG0580028405.01.T01:three_prime_UTR
AGGACAATCGTCTTCGTATA+TGG 0.237095 5:+80108701 MsG0580028405.01.T01:CDS
AACACCTGGAAAATGCTTTA+TGG 0.242204 5:+80107952 MsG0580028405.01.T01:CDS
TATGCATGCGACTTCTCTTT+TGG 0.245861 5:+80110060 MsG0580028405.01.T01:three_prime_UTR
CATTTCTCATATTGTTTGTA+TGG 0.251091 5:+80105521 MsG0580028405.01.T01:CDS
CAAAGAAAACAAGGTTTCAT+AGG 0.255454 5:-80105471 None:intergenic
CATGCCATCCATCAGGATTC+AGG 0.269004 5:-80107771 None:intergenic
AACCATTAGTTGTACTGATT+TGG 0.271261 5:+80107720 MsG0580028405.01.T01:CDS
CAGCTTTGAAGGGTGTTAAA+TGG 0.287007 5:-80108789 None:intergenic
CACATACTCCAAAGGTTTAG+AGG 0.287821 5:-80106692 None:intergenic
TCCTGGCAACTGGGAGTTCT+AGG 0.318166 5:+80109094 MsG0580028405.01.T01:CDS
CTATATTGTAGGCGCGCATT+TGG 0.318325 5:+80108566 MsG0580028405.01.T01:intron
GCATATTTCTCTCCAATAAC+TGG 0.326448 5:+80108655 MsG0580028405.01.T01:CDS
TCTCTTTCAATGAGAACTTT+GGG 0.330765 5:-80105112 None:intergenic
AAATGAAAAGATTGAGAAAC+TGG 0.345976 5:+80105222 MsG0580028405.01.T01:CDS
TTGGTCTGGAATCACACATT+TGG 0.346565 5:-80107258 None:intergenic
TGGATCCCATTCAGCTTTGA+AGG 0.350384 5:-80108800 None:intergenic
CATGACTATGCACAATTTCT+CGG 0.350606 5:-80108756 None:intergenic
TTAGAGTCACTTGCTGTTGT+TGG 0.357110 5:+80108925 MsG0580028405.01.T01:CDS
AGAAAGGACAACTTGGAGTC+TGG 0.357633 5:+80107470 MsG0580028405.01.T01:intron
GGACTGATGGTTGTGATGTT+CGG 0.374930 5:-80109042 None:intergenic
TTTCTGAGAGTTAGCGTAAT+GGG 0.378118 5:-80105280 None:intergenic
GTCTCTTTCAATGAGAACTT+TGG 0.378205 5:-80105113 None:intergenic
GTGAAGAAAACCAAAGTTAT+CGG 0.387021 5:-80108013 None:intergenic
CGTGATGATATCCTGGCAAC+TGG 0.388271 5:+80109084 MsG0580028405.01.T01:CDS
TGGTCTGGAATCACACATTT+GGG 0.388716 5:-80107257 None:intergenic
TACTGAGCATGGTGTTGTTC+CGG 0.398936 5:+80106654 MsG0580028405.01.T01:CDS
CTTGTATCTATAAAATCAAT+AGG 0.399051 5:-80108988 None:intergenic
TAATCCTACAAATGATTGTA+TGG 0.401174 5:+80107675 MsG0580028405.01.T01:CDS
CAATTTCCATTCAGTCTGCT+TGG 0.404544 5:-80109889 None:intergenic
TAGGTGACTTCTCTTTGTAT+AGG 0.406531 5:+80110118 MsG0580028405.01.T01:three_prime_UTR
GACTGATGGTTGTGATGTTC+GGG 0.410135 5:-80109041 None:intergenic
TGCATCACCATTCCTATGAT+TGG 0.418131 5:-80108369 None:intergenic
CCACAAGTCAAAAGGATGTC+TGG 0.420331 5:-80108449 None:intergenic
CATCCTGTTGTCGGGAGATA+AGG 0.421944 5:+80107352 MsG0580028405.01.T01:CDS
CTCCAAATCAGTACAACTAA+TGG 0.423674 5:-80107722 None:intergenic
TATATTGTAGGCGCGCATTT+GGG 0.425675 5:+80108567 MsG0580028405.01.T01:intron
TCAAACTGCTAACCATGTAT+AGG 0.431737 5:+80109984 MsG0580028405.01.T01:three_prime_UTR
TCGACATGCGGTCCAATCAT+AGG 0.436742 5:+80108357 MsG0580028405.01.T01:CDS
CACTTTGAATTGTCCACATC+GGG 0.441106 5:+80106627 MsG0580028405.01.T01:CDS
TGGTCATGAAGCGGGTTTCA+AGG 0.442646 5:+80105428 MsG0580028405.01.T01:CDS
CGTATAGAGAAAATTTGGTT+GGG 0.444250 5:+80110226 MsG0580028405.01.T01:three_prime_UTR
AGTTGTACTGATTTGGAGAC+TGG 0.447052 5:+80107727 MsG0580028405.01.T01:CDS
GAATACAAAAGCGTGAAGAT+AGG 0.449811 5:-80110169 None:intergenic
CTGGAAAATGCTTTATGGTA+TGG 0.452127 5:+80107957 MsG0580028405.01.T01:CDS
TAGACCATACAATCATTTGT+AGG 0.454241 5:-80107679 None:intergenic
TAACCTTATCTCCCGACAAC+AGG 0.455373 5:-80107355 None:intergenic
ATCTGAGACGGTCGAGGAGA+AGG 0.459772 5:+80109749 MsG0580028405.01.T01:CDS
GGACAATCGTCTTCGTATAT+GGG 0.460807 5:+80108702 MsG0580028405.01.T01:CDS
ACAGCGCAACTCACTTGGTC+TGG 0.463787 5:-80107272 None:intergenic
AATGAGAACTTTGGGGAAAG+AGG 0.464363 5:-80105104 None:intergenic
CTATCTATTGGCAAATCTGT+TGG 0.470268 5:-80110272 None:intergenic
CAAAATTCTTACTACTTCAC+AGG 0.470688 5:+80108681 MsG0580028405.01.T01:CDS
CCGTATAGAGAAAATTTGGT+TGG 0.472294 5:+80110225 MsG0580028405.01.T01:three_prime_UTR
TAACACCCTTCAAAGCTGAA+TGG 0.473837 5:+80108794 MsG0580028405.01.T01:CDS
ACAACAGCAAGTGACTCTAA+TGG 0.474300 5:-80108922 None:intergenic
AAAAGGATGTCTGGTTGCAT+TGG 0.474611 5:-80108440 None:intergenic
TAGGAATGGCATGTCTTAGC+TGG 0.475369 5:-80106723 None:intergenic
TATCTATTGGCAAATCTGTT+GGG 0.478194 5:-80110271 None:intergenic
ACCTAGAACTCCCAGTTGCC+AGG 0.480432 5:-80109095 None:intergenic
CTATAAAATCAATAGGATGC+AGG 0.481005 5:-80108981 None:intergenic
AATATTACATGCCATCCATC+AGG 0.482629 5:-80107778 None:intergenic
AAAGAGGTTCTACGAGTAAC+CGG 0.483672 5:-80105088 None:intergenic
GATCATTTCCACAAGTCAAA+AGG 0.485595 5:-80108457 None:intergenic
GAAAGGACAACTTGGAGTCT+GGG 0.485905 5:+80107471 MsG0580028405.01.T01:intron
AACACCCTTCAAAGCTGAAT+GGG 0.487045 5:+80108795 MsG0580028405.01.T01:CDS
AAGAATAACATCCTGTTGTC+GGG 0.488018 5:+80107344 MsG0580028405.01.T01:CDS
ATTTCTCATATTGTTTGTAT+GGG 0.489477 5:+80105522 MsG0580028405.01.T01:CDS
TTGAAACCCGCTTCATGACC+AGG 0.490682 5:-80105426 None:intergenic
GTGCTCGTGGCCGATAACTT+TGG 0.491495 5:+80108003 MsG0580028405.01.T01:CDS
TTTACTAGGGGCCAAACACC+TGG 0.499445 5:+80107938 MsG0580028405.01.T01:intron
ACTATGCACAATTTCTCGGC+TGG 0.500089 5:-80108752 None:intergenic
AAAGAAAACAAGGTTTCATA+GGG 0.501938 5:-80105470 None:intergenic
AGAAGAAGCACTCGAGGAGG+AGG 0.503448 5:+80105171 MsG0580028405.01.T01:CDS
TATAAAATCAATAGGATGCA+GGG 0.504604 5:-80108980 None:intergenic
GTATCATATGCATATTAGAT+TGG 0.505097 5:+80110095 MsG0580028405.01.T01:three_prime_UTR
ATCGATGAATCCGATGATGA+TGG 0.505501 5:+80109837 MsG0580028405.01.T01:CDS
GAAGAATAACATCCTGTTGT+CGG 0.505802 5:+80107343 MsG0580028405.01.T01:CDS
CATATGCATATTAGATTGGT+AGG 0.510662 5:+80110099 MsG0580028405.01.T01:three_prime_UTR
CTGAGAAGAAACGTGGTAAG+AGG 0.511583 5:+80109802 MsG0580028405.01.T01:CDS
TCATAAAAGAAAGGACAACT+TGG 0.517742 5:+80107463 MsG0580028405.01.T01:intron
GGATCCCATTCAGCTTTGAA+GGG 0.518856 5:-80108799 None:intergenic
GAAAGCAAAATTGTGGTTTG+TGG 0.518880 5:+80109774 MsG0580028405.01.T01:CDS
TCATCCACGTGATGATATCC+TGG 0.520328 5:+80109077 MsG0580028405.01.T01:CDS
TAACAACACGCTTGTGCTCA+AGG 0.528107 5:-80108627 None:intergenic
AAGCTTATTCACCGGACTGA+TGG 0.528676 5:-80109055 None:intergenic
GTCTATTCCGCATCCTCAGA+TGG 0.528780 5:+80107697 MsG0580028405.01.T01:CDS
TGATAACAGCGCAACTCACT+TGG 0.530316 5:-80107277 None:intergenic
AAAGATTGAGAAACTGGAAG+TGG 0.531341 5:+80105228 MsG0580028405.01.T01:CDS
ATGGATATTCACTATGAGAA+AGG 0.532012 5:+80107976 MsG0580028405.01.T01:CDS
CAAAATCCAAGCAGACTGAA+TGG 0.532156 5:+80109883 MsG0580028405.01.T01:CDS
CTCTTTCAATGAGAACTTTG+GGG 0.535912 5:-80105111 None:intergenic
TGAGAAGGTTTACGAGAAAG+TGG 0.536172 5:+80107498 MsG0580028405.01.T01:CDS
CTATGCACAATTTCTCGGCT+GGG 0.540395 5:-80108751 None:intergenic
CCATCAGGATTCAGGTTCAT+CGG 0.543513 5:-80107763 None:intergenic
AAGAAGCCTGGTCATGAAGC+GGG 0.545678 5:+80105420 MsG0580028405.01.T01:CDS
AACTCTCAGAAAAGTTTGCA+AGG 0.549049 5:+80105291 MsG0580028405.01.T01:CDS
GGTCATGAAGCGGGTTTCAA+GGG 0.549246 5:+80105429 MsG0580028405.01.T01:CDS
GATATGCGTCACTTAGAAGC+TGG 0.550288 5:+80108589 MsG0580028405.01.T01:CDS
AAGATTGAGAAACTGGAAGT+GGG 0.551746 5:+80105229 MsG0580028405.01.T01:CDS
CCGATGAACCTGAATCCTGA+TGG 0.557467 5:+80107763 MsG0580028405.01.T01:CDS
AAGAAACGTGGTAAGAGGAA+AGG 0.563572 5:+80109807 MsG0580028405.01.T01:CDS
TAGTAGACGGATAACAAGCT+TGG 0.565758 5:+80107307 MsG0580028405.01.T01:CDS
TTATAGGTGTGTAAGAAGCC+TGG 0.566694 5:+80105408 MsG0580028405.01.T01:intron
ACAGGATGTTATTCTTCGTA+GGG 0.566721 5:-80107337 None:intergenic
GCAGTTGGTAGCAGAAGTCA+TGG 0.572898 5:+80109017 MsG0580028405.01.T01:CDS
AATGGTTCCATCTGAGGATG+CGG 0.574097 5:-80107704 None:intergenic
ATGTTGATATTCAACTTACC+AGG 0.574374 5:-80105501 None:intergenic
ACAACTAATGGTTCCATCTG+AGG 0.576667 5:-80107710 None:intergenic
AGATACAAGTACAGGGCAGT+TGG 0.578810 5:+80109002 MsG0580028405.01.T01:CDS
TGAGAAAGGTCTTGTGCTCG+TGG 0.581673 5:+80107990 MsG0580028405.01.T01:CDS
ACTCTATCTGCTATTTCACA+TGG 0.581736 5:+80106410 MsG0580028405.01.T01:CDS
GGAAATGAATCCATCATCAT+CGG 0.582701 5:-80109847 None:intergenic
TCTGTTCATTTGGAAGCCAA+AGG 0.589673 5:+80109722 MsG0580028405.01.T01:CDS
CGTGGATGAAGCTTATTCAC+CGG 0.591688 5:-80109063 None:intergenic
TCGGTTCTTTAACATGGCAC+CGG 0.592131 5:+80105069 None:intergenic
CAAAGCTGAATGGGATCCAA+AGG 0.592946 5:+80108804 MsG0580028405.01.T01:CDS
GAACATCACAACCATCAGTC+CGG 0.595957 5:+80109044 MsG0580028405.01.T01:CDS
ACTTAGGCTTACCGTAGGAA+TGG 0.598093 5:-80106737 None:intergenic
ATGCGGTCCAATCATAGGAA+TGG 0.598179 5:+80108362 MsG0580028405.01.T01:CDS
GGATGTTATTCTTCGTAGGG+TGG 0.599457 5:-80107334 None:intergenic
ATTGTCTCGCTGCTCGACAA+AGG 0.600055 5:+80109908 MsG0580028405.01.T01:CDS
TAAGAAGCCTGGTCATGAAG+CGG 0.617194 5:+80105419 MsG0580028405.01.T01:CDS
CATCGGGTCACTACTGAGCA+TGG 0.620894 5:+80106643 MsG0580028405.01.T01:CDS
AGAAGAAGAAGAAGCACTCG+AGG 0.621203 5:+80105165 MsG0580028405.01.T01:CDS
CGTTCAAACACATACTCCAA+AGG 0.622066 5:-80106700 None:intergenic
TTATCAGATATCATAGTAGA+CGG 0.622532 5:+80107294 MsG0580028405.01.T01:CDS
GTGATGATATCCTGGCAACT+GGG 0.623672 5:+80109085 MsG0580028405.01.T01:CDS
AACAGGATGTTATTCTTCGT+AGG 0.624223 5:-80107338 None:intergenic
GAAGGACGAAAGCAAAATTG+TGG 0.625614 5:+80109767 MsG0580028405.01.T01:CDS
CCACTTTGAATTGTCCACAT+CGG 0.628827 5:+80106626 MsG0580028405.01.T01:CDS
TGCTCAGTAGTGACCCGATG+TGG 0.633127 5:-80106640 None:intergenic
GTCATTACAGGGTCGACATG+CGG 0.635357 5:+80108345 MsG0580028405.01.T01:intron
AGAAGAAGAAGCACTCGAGG+AGG 0.636304 5:+80105168 MsG0580028405.01.T01:CDS
GCTAAGACATGCCATTCCTA+CGG 0.637351 5:+80106726 MsG0580028405.01.T01:CDS
GGAGCTTGGTAACCTATACA+TGG 0.640719 5:-80109996 None:intergenic
GCTTGTGCTCAAGGCTACAG+AGG 0.642505 5:-80108618 None:intergenic
TGAACCTGAATCCTGATGGA+TGG 0.648338 5:+80107767 MsG0580028405.01.T01:CDS
CTTGTGCTCAAGGCTACAGA+GGG 0.650690 5:-80108617 None:intergenic
AGGATTCAGGTTCATCGGAG+AGG 0.675833 5:-80107758 None:intergenic
CCGATGTGGACAATTCAAAG+TGG 0.705167 5:-80106626 None:intergenic
GGAAAAGCTGAGAAGAAACG+TGG 0.725862 5:+80109795 MsG0580028405.01.T01:CDS
GTTGCCAGGATATCATCACG+TGG 0.762098 5:-80109081 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATAAGAACAATTTAATTAT+TGG - Chr5:80107090-80107109 None:intergenic 10.0%
!! ATAATTTAAGAAAAAACATT+TGG - Chr5:80107809-80107828 None:intergenic 10.0%
!!! TAAAATTTTCACTTATATAA+CGG - Chr5:80108951-80108970 None:intergenic 10.0%
!!! TATATAAGTGAAAATTTTAA+TGG + Chr5:80108952-80108971 MsG0580028405.01.T01:CDS 10.0%
!! AAGCTATATTATTAATCTTA+AGG + Chr5:80109667-80109686 MsG0580028405.01.T01:intron 15.0%
!! AATCAAAATTTCAACTTTAA+AGG - Chr5:80109441-80109460 None:intergenic 15.0%
!! AGCTATATTATTAATCTTAA+GGG + Chr5:80109668-80109687 MsG0580028405.01.T01:intron 15.0%
!! ATGTAATTTACAGTAATAAT+AGG - Chr5:80107381-80107400 None:intergenic 15.0%
!! ATTCTTAAAAAGATAAATGT+TGG - Chr5:80108240-80108259 None:intergenic 15.0%
!! TATACAAATAAAAAAGGAAA+TGG - Chr5:80106320-80106339 None:intergenic 15.0%
!! TTTGTTAATTAGATATACAT+AGG + Chr5:80109616-80109635 MsG0580028405.01.T01:intron 15.0%
!!! AGTTTTCCTATTAAAAAATT+AGG - Chr5:80106218-80106237 None:intergenic 15.0%
!!! ATATTTTAAAAGAATGACTT+AGG - Chr5:80106756-80106775 None:intergenic 15.0%
!!! TATTGGAATTTTGTTATTAT+AGG + Chr5:80105392-80105411 MsG0580028405.01.T01:intron 15.0%
!!! TTGAATATGTTTCTTTTAAT+TGG + Chr5:80108142-80108161 MsG0580028405.01.T01:intron 15.0%
!!! TTTTAATTGAAAAACTTTGT+AGG + Chr5:80107650-80107669 MsG0580028405.01.T01:intron 15.0%
!! AAAAAAATTCATAACTACGA+AGG - Chr5:80108184-80108203 None:intergenic 20.0%
!! AAAAAATTCATAACTACGAA+GGG - Chr5:80108183-80108202 None:intergenic 20.0%
!! AAAATAAGTAGAAACGAAAA+GGG - Chr5:80108871-80108890 None:intergenic 20.0%
!! AATATTGTTTATGTAATTGC+AGG + Chr5:80108897-80108916 MsG0580028405.01.T01:intron 20.0%
!! ATAATTACATGACTGAAAAA+AGG - Chr5:80106930-80106949 None:intergenic 20.0%
!! ATTTCTCATATTGTTTGTAT+GGG + Chr5:80105522-80105541 MsG0580028405.01.T01:CDS 20.0%
!! CTGATAATAGTTTAAGAAAA+TGG + Chr5:80105835-80105854 MsG0580028405.01.T01:intron 20.0%
!! CTTGTATCTATAAAATCAAT+AGG - Chr5:80108991-80109010 None:intergenic 20.0%
!! GAAAATTAACAATTACATGA+AGG - Chr5:80107588-80107607 None:intergenic 20.0%
!! GAACTTGAATATGTATAAAA+AGG - Chr5:80108498-80108517 None:intergenic 20.0%
!! GTTGCATATACAAATAAAAA+AGG - Chr5:80106326-80106345 None:intergenic 20.0%
!! TAAAATAAGTAGAAACGAAA+AGG - Chr5:80108872-80108891 None:intergenic 20.0%
!! TAATTACATGACTGAAAAAA+GGG - Chr5:80106929-80106948 None:intergenic 20.0%
!! TCCACAATGAAAATATTAAA+AGG - Chr5:80107063-80107082 None:intergenic 20.0%
!! TCCATATAAAATCATCTTTA+AGG - Chr5:80105694-80105713 None:intergenic 20.0%
!! TGAATGATACATAAACATTA+TGG - Chr5:80107161-80107180 None:intergenic 20.0%
!!! AATATATTTTGCTATAATGC+CGG - Chr5:80106032-80106051 None:intergenic 20.0%
!!! ACATGACCTAATTTTTTAAT+AGG + Chr5:80106209-80106228 MsG0580028405.01.T01:intron 20.0%
!!! ATGAATTTTTTTCTTGGTTA+GGG + Chr5:80108192-80108211 MsG0580028405.01.T01:intron 20.0%
!!! ATTTTATAGATACAAGTACA+GGG + Chr5:80108995-80109014 MsG0580028405.01.T01:CDS 20.0%
!!! GTAGTTATGAATTTTTTTCT+TGG + Chr5:80108186-80108205 MsG0580028405.01.T01:intron 20.0%
!!! GTTACTTGATATAATTTTTC+AGG + Chr5:80109697-80109716 MsG0580028405.01.T01:intron 20.0%
!!! TATGAATTTTTTTCTTGGTT+AGG + Chr5:80108191-80108210 MsG0580028405.01.T01:intron 20.0%
!!! TATTACATTTTAGGACTATA+TGG - Chr5:80108089-80108108 None:intergenic 20.0%
!!! TCCTTAAAGATGATTTTATA+TGG + Chr5:80105690-80105709 MsG0580028405.01.T01:intron 20.0%
!!! TCCTTTTAATATTTTCATTG+TGG + Chr5:80107059-80107078 MsG0580028405.01.T01:intron 20.0%
!!! TGTATGTGTTATTTTTACTA+GGG + Chr5:80107925-80107944 MsG0580028405.01.T01:intron 20.0%
!!! TTGTATGTGTTATTTTTACT+AGG + Chr5:80107924-80107943 MsG0580028405.01.T01:intron 20.0%
!!! TTTGATTTACAAAATTGCAA+GGG + Chr5:80109454-80109473 MsG0580028405.01.T01:intron 20.0%
!!! TTTTATTTTACTAGTGAATG+TGG + Chr5:80105548-80105567 MsG0580028405.01.T01:CDS 20.0%
!!! TTTTGATTTACAAAATTGCA+AGG + Chr5:80109453-80109472 MsG0580028405.01.T01:intron 20.0%
! AAAAATGTTGTGTTTGTTTG+AGG + Chr5:80105627-80105646 MsG0580028405.01.T01:intron 25.0%
! AAAGAAAACAAGGTTTCATA+GGG - Chr5:80105473-80105492 None:intergenic 25.0%
! AAAGATAAATGTTGGAAAGA+TGG - Chr5:80108232-80108251 None:intergenic 25.0%
! AAAGGCTTAAAAATTTGATG+AGG - Chr5:80109423-80109442 None:intergenic 25.0%
! AAATGAAAAGATTGAGAAAC+TGG + Chr5:80105222-80105241 MsG0580028405.01.T01:CDS 25.0%
! CAAAATGGTTTCTATATTGT+AGG + Chr5:80108555-80108574 MsG0580028405.01.T01:intron 25.0%
! CAATATGGTATATTGTGATT+TGG + Chr5:80106863-80106882 MsG0580028405.01.T01:intron 25.0%
! CATTTCTCATATTGTTTGTA+TGG + Chr5:80105521-80105540 MsG0580028405.01.T01:CDS 25.0%
! CTGCTTTAATCATAAAAGAA+AGG + Chr5:80107454-80107473 MsG0580028405.01.T01:intron 25.0%
! GTATCATATGCATATTAGAT+TGG + Chr5:80110095-80110114 MsG0580028405.01.T01:three_prime_UTR 25.0%
! GTTGAAAAGTTTGCATATTA+CGG - Chr5:80106272-80106291 None:intergenic 25.0%
! TAAGCCTTCAATTTATGAAT+AGG - Chr5:80107013-80107032 None:intergenic 25.0%
! TAATCCTACAAATGATTGTA+TGG + Chr5:80107675-80107694 MsG0580028405.01.T01:CDS 25.0%
! TATAAAATCAATAGGATGCA+GGG - Chr5:80108983-80109002 None:intergenic 25.0%
! TATGATTAAAGCAGAAAAAG+AGG - Chr5:80107448-80107467 None:intergenic 25.0%
! TCATATATGAAGGACTAAAT+AGG - Chr5:80107136-80107155 None:intergenic 25.0%
! TTAAACAAAAAAGCTACCTT+TGG - Chr5:80108823-80108842 None:intergenic 25.0%
! TTATCAGATATCATAGTAGA+CGG + Chr5:80107294-80107313 MsG0580028405.01.T01:CDS 25.0%
! TTCTGTATCCATACTATTAA+AGG - Chr5:80109648-80109667 None:intergenic 25.0%
!! AATTGGTTTCATATATGACA+TGG - Chr5:80108297-80108316 None:intergenic 25.0%
!! ATCTTTTGTCATACATAGAA+AGG - Chr5:80109196-80109215 None:intergenic 25.0%
!! CTGTTTTATGTGTTTCAATA+TGG + Chr5:80106848-80106867 MsG0580028405.01.T01:intron 25.0%
!! GATGATTTTATATGGAACAA+AGG + Chr5:80105698-80105717 MsG0580028405.01.T01:intron 25.0%
!! GATTTTATAGATACAAGTAC+AGG + Chr5:80108994-80109013 MsG0580028405.01.T01:CDS 25.0%
!! TAAGTTGCGATTTTTCTTAT+GGG + Chr5:80105369-80105388 MsG0580028405.01.T01:intron 25.0%
!! TTTATCGATTAGCAATATGA+TGG + Chr5:80106483-80106502 MsG0580028405.01.T01:intron 25.0%
!!! AGAATTTTGTTTCCAGTTAT+TGG - Chr5:80108670-80108689 None:intergenic 25.0%
!!! ATGATTGATTTGTTCTTGTA+AGG + Chr5:80105747-80105766 MsG0580028405.01.T01:intron 25.0%
!!! CTTTAGTTTTGAAGAATGTT+TGG + Chr5:80106785-80106804 MsG0580028405.01.T01:intron 25.0%
!!! GTATGTGTTATTTTTACTAG+GGG + Chr5:80107926-80107945 MsG0580028405.01.T01:intron 25.0%
!!! TAACTTTGCTACCTTTTTTA+TGG - Chr5:80108403-80108422 None:intergenic 25.0%
!!! TCTTGTTGGTTTAAAACATT+GGG + Chr5:80109287-80109306 MsG0580028405.01.T01:intron 25.0%
!!! TTAAGTTGCGATTTTTCTTA+TGG + Chr5:80105368-80105387 MsG0580028405.01.T01:intron 25.0%
AAAAAAGGTAGCAAAGTTAC+TGG + Chr5:80108404-80108423 MsG0580028405.01.T01:CDS 30.0%
AAAATTGAACCTACACAAAG+TGG + Chr5:80109321-80109340 MsG0580028405.01.T01:intron 30.0%
AACCCCAAAAAACAAAAGAA+GGG - Chr5:80110020-80110039 None:intergenic 30.0%
ACGATTAGTATGATTATCTG+AGG - Chr5:80109133-80109152 None:intergenic 30.0%
ACTATCCTAGATTCACAATT+AGG + Chr5:80106079-80106098 MsG0580028405.01.T01:intron 30.0%
AGGAAGAAGAAGAAGAAAAT+GGG + Chr5:80105191-80105210 MsG0580028405.01.T01:CDS 30.0%
ATGGATATTCACTATGAGAA+AGG + Chr5:80107976-80107995 MsG0580028405.01.T01:CDS 30.0%
ATGTTGATATTCAACTTACC+AGG - Chr5:80105504-80105523 None:intergenic 30.0%
ATTACCCTAATTGTGAATCT+AGG - Chr5:80106087-80106106 None:intergenic 30.0%
ATTCACAATTAGGGTAATAG+TGG + Chr5:80106089-80106108 MsG0580028405.01.T01:intron 30.0%
CAAAATTCTTACTACTTCAC+AGG + Chr5:80108681-80108700 MsG0580028405.01.T01:CDS 30.0%
CAAAGAAAACAAGGTTTCAT+AGG - Chr5:80105474-80105493 None:intergenic 30.0%
CACACCTATTCATAAATTGA+AGG + Chr5:80107006-80107025 MsG0580028405.01.T01:intron 30.0%
CAGTGTAAACGAAAAAGTAA+TGG - Chr5:80106894-80106913 None:intergenic 30.0%
CATATGCATATTAGATTGGT+AGG + Chr5:80110099-80110118 MsG0580028405.01.T01:three_prime_UTR 30.0%
CATTATGGACTCATATATGA+AGG - Chr5:80107146-80107165 None:intergenic 30.0%
CGTATAGAGAAAATTTGGTT+GGG + Chr5:80110226-80110245 MsG0580028405.01.T01:three_prime_UTR 30.0%
CTATAAAATCAATAGGATGC+AGG - Chr5:80108984-80109003 None:intergenic 30.0%
CTATAGCCAACAAAATTTGA+TGG - Chr5:80108119-80108138 None:intergenic 30.0%
CTATCCTAGATTCACAATTA+GGG + Chr5:80106080-80106099 MsG0580028405.01.T01:intron 30.0%
CTTCAATTTATGAATAGGTG+TGG - Chr5:80107008-80107027 None:intergenic 30.0%
GACTTATTTCAACTGTTATG+CGG + Chr5:80106368-80106387 MsG0580028405.01.T01:intron 30.0%
GAGAGAAAAATATTGAGACA+AGG - Chr5:80106521-80106540 None:intergenic 30.0%
GTGAAGAAAACCAAAGTTAT+CGG - Chr5:80108016-80108035 None:intergenic 30.0%
TAACAATTACATGAAGGTTG+TGG - Chr5:80107582-80107601 None:intergenic 30.0%
TACATGAGTTTACTCTTCAA+TGG - Chr5:80109500-80109519 None:intergenic 30.0%
TAGACCATACAATCATTTGT+AGG - Chr5:80107682-80107701 None:intergenic 30.0%
TAGTCATTGAGTCCAAAAAA+AGG + Chr5:80108263-80108282 MsG0580028405.01.T01:intron 30.0%
TCATAAAAGAAAGGACAACT+TGG + Chr5:80107463-80107482 MsG0580028405.01.T01:intron 30.0%
TCTCTTTCAATGAGAACTTT+GGG - Chr5:80105115-80105134 None:intergenic 30.0%
TCTTCCGTATAGAGAAAATT+TGG + Chr5:80110221-80110240 MsG0580028405.01.T01:three_prime_UTR 30.0%
TGTCTGACATCAATAAATGT+CGG + Chr5:80105869-80105888 MsG0580028405.01.T01:intron 30.0%
! ATAAAATGAAGAGTGTGTCT+GGG - Chr5:80106468-80106487 None:intergenic 30.0%
! ATGCAATAGTGGGAAAAAAA+GGG + Chr5:80106141-80106160 MsG0580028405.01.T01:intron 30.0%
! CAGTCTAGAACTCAAATAAA+AGG + Chr5:80105961-80105980 MsG0580028405.01.T01:intron 30.0%
! CCAACCAAATTTTCTCTATA+CGG - Chr5:80110228-80110247 None:intergenic 30.0%
! GGAGGGATATATTACATTTT+AGG - Chr5:80108098-80108117 None:intergenic 30.0%
! GGAGTTTTACAAAGAAAACA+AGG - Chr5:80105483-80105502 None:intergenic 30.0%
! GGATTCTATCTTTGGTAATA+TGG + Chr5:80108723-80108742 MsG0580028405.01.T01:CDS 30.0%
! TGTCTCAATATTTTTCTCTC+TGG + Chr5:80106521-80106540 MsG0580028405.01.T01:intron 30.0%
! TGTGGTTTGATGATATATGA+TGG + Chr5:80105566-80105585 MsG0580028405.01.T01:intron 30.0%
! TGTTTTCTTTGTAAAACTCC+TGG + Chr5:80105483-80105502 MsG0580028405.01.T01:CDS 30.0%
! TTTAGCACTCACTCTTTTAT+TGG - Chr5:80109368-80109387 None:intergenic 30.0%
!! AACCATTAGTTGTACTGATT+TGG + Chr5:80107720-80107739 MsG0580028405.01.T01:CDS 30.0%
!! AAGTTTGCAAGGTTTGTTAA+TGG + Chr5:80105302-80105321 MsG0580028405.01.T01:intron 30.0%
!! CTCTTGTTGGTTTAAAACAT+TGG + Chr5:80109286-80109305 MsG0580028405.01.T01:intron 30.0%
!! GAACAAAGGTGATTTTGTTT+TGG + Chr5:80105712-80105731 MsG0580028405.01.T01:intron 30.0%
!! GCAGTTTTGATCCATAAAAA+AGG + Chr5:80108389-80108408 MsG0580028405.01.T01:CDS 30.0%
!! GTTTTGATGCTAATAGGAAA+GGG + Chr5:80105251-80105270 MsG0580028405.01.T01:CDS 30.0%
!!! ATGGCTATAGATCCTTTTTT+TGG - Chr5:80108278-80108297 None:intergenic 30.0%
!!! CTTTTATTTGAGTTCTAGAC+TGG - Chr5:80105963-80105982 None:intergenic 30.0%
!!! TTCTTTTGTTTTTTGGGGTT+GGG + Chr5:80110020-80110039 MsG0580028405.01.T01:three_prime_UTR 30.0%
AAAAACAAAAGAAGGGAGCT+TGG - Chr5:80110013-80110032 None:intergenic 35.0%
AAAGATTGAGAAACTGGAAG+TGG + Chr5:80105228-80105247 MsG0580028405.01.T01:CDS 35.0%
AACACCTGGAAAATGCTTTA+TGG + Chr5:80107952-80107971 MsG0580028405.01.T01:CDS 35.0%
AACAGGATGTTATTCTTCGT+AGG - Chr5:80107341-80107360 None:intergenic 35.0%
AACTCTCAGAAAAGTTTGCA+AGG + Chr5:80105291-80105310 MsG0580028405.01.T01:CDS 35.0%
AAGAATAACATCCTGTTGTC+GGG + Chr5:80107344-80107363 MsG0580028405.01.T01:CDS 35.0%
AAGATTGAGAAACTGGAAGT+GGG + Chr5:80105229-80105248 MsG0580028405.01.T01:CDS 35.0%
AATATTACATGCCATCCATC+AGG - Chr5:80107781-80107800 None:intergenic 35.0%
ACAGGATGTTATTCTTCGTA+GGG - Chr5:80107340-80107359 None:intergenic 35.0%
ACATGCATGCTGAAACAAAA+TGG + Chr5:80108540-80108559 MsG0580028405.01.T01:intron 35.0%
ACATTTACAGAATGACCTTG+AGG - Chr5:80107873-80107892 None:intergenic 35.0%
AGAGTATGTTATGCCATGTT+TGG + Chr5:80105654-80105673 MsG0580028405.01.T01:intron 35.0%
AGCCAACAAAATTTGATGGA+GGG - Chr5:80108115-80108134 None:intergenic 35.0%
AGCTAATGTAGATGCAATAG+TGG + Chr5:80106130-80106149 MsG0580028405.01.T01:intron 35.0%
AGGAATCAGTGGCTAAATAA+AGG - Chr5:80107428-80107447 None:intergenic 35.0%
ATTTGTTCTTGTAAGGACTG+GGG + Chr5:80105754-80105773 MsG0580028405.01.T01:intron 35.0%
CAACCCCAAAAAACAAAAGA+AGG - Chr5:80110021-80110040 None:intergenic 35.0%
CAAGTCAATATCGCAAAAGA+TGG - Chr5:80106597-80106616 None:intergenic 35.0%
CAGAAAAACCTCTAAACCTT+TGG + Chr5:80106684-80106703 MsG0580028405.01.T01:CDS 35.0%
CATCAATAAATGTCGGATAC+TGG + Chr5:80105876-80105895 MsG0580028405.01.T01:intron 35.0%
CATGACTATGCACAATTTCT+CGG - Chr5:80108759-80108778 None:intergenic 35.0%
CCGTATAGAGAAAATTTGGT+TGG + Chr5:80110225-80110244 MsG0580028405.01.T01:three_prime_UTR 35.0%
CGTATATGGGATTCTATCTT+TGG + Chr5:80108715-80108734 MsG0580028405.01.T01:CDS 35.0%
CTCCAAATCAGTACAACTAA+TGG - Chr5:80107725-80107744 None:intergenic 35.0%
CTCTTTCAATGAGAACTTTG+GGG - Chr5:80105114-80105133 None:intergenic 35.0%
CTGGAAAATGCTTTATGGTA+TGG + Chr5:80107957-80107976 MsG0580028405.01.T01:CDS 35.0%
GAAAGCAAAATTGTGGTTTG+TGG + Chr5:80109774-80109793 MsG0580028405.01.T01:CDS 35.0%
GAAGAATAACATCCTGTTGT+CGG + Chr5:80107343-80107362 MsG0580028405.01.T01:CDS 35.0%
GAGGAAGAAGAAGAAGAAAA+TGG + Chr5:80105190-80105209 MsG0580028405.01.T01:CDS 35.0%
GAGTATGTTATGCCATGTTT+GGG + Chr5:80105655-80105674 MsG0580028405.01.T01:intron 35.0%
GATATGTCTGGTATGCTAAT+TGG - Chr5:80108314-80108333 None:intergenic 35.0%
GATCATTTCCACAAGTCAAA+AGG - Chr5:80108460-80108479 None:intergenic 35.0%
GCATATTTCTCTCCAATAAC+TGG + Chr5:80108655-80108674 MsG0580028405.01.T01:CDS 35.0%
GCTAATGTAGATGCAATAGT+GGG + Chr5:80106131-80106150 MsG0580028405.01.T01:intron 35.0%
GGAAATGAATCCATCATCAT+CGG - Chr5:80109850-80109869 None:intergenic 35.0%
GGAAGAAGAAGAAGAAAATG+GGG + Chr5:80105192-80105211 MsG0580028405.01.T01:CDS 35.0%
GGACTTTGCCTTTAATAGTA+TGG + Chr5:80109637-80109656 MsG0580028405.01.T01:intron 35.0%
GGGAAAAAAAGGGAATCTTA+GGG + Chr5:80106151-80106170 MsG0580028405.01.T01:intron 35.0%
GTCTCTTTCAATGAGAACTT+TGG - Chr5:80105116-80105135 None:intergenic 35.0%
TAGCCAACAAAATTTGATGG+AGG - Chr5:80108116-80108135 None:intergenic 35.0%
TAGGTGACTTCTCTTTGTAT+AGG + Chr5:80110118-80110137 MsG0580028405.01.T01:three_prime_UTR 35.0%
TCAAACTGCTAACCATGTAT+AGG + Chr5:80109984-80110003 MsG0580028405.01.T01:three_prime_UTR 35.0%
TGGGAAAAAAAGGGAATCTT+AGG + Chr5:80106150-80106169 MsG0580028405.01.T01:intron 35.0%
TGTATCATTCACTTTGTTCC+AGG + Chr5:80107170-80107189 MsG0580028405.01.T01:intron 35.0%
TTGCATATTACGGTGAATCT+AGG - Chr5:80106262-80106281 None:intergenic 35.0%
! AAGGTTTAGAGGTTTTTCTG+CGG - Chr5:80106684-80106703 None:intergenic 35.0%
! AGAGTTTTTGCTCGAACTTA+GGG + Chr5:80107036-80107055 MsG0580028405.01.T01:intron 35.0%
! ATCCCTCCATCAAATTTTGT+TGG + Chr5:80108110-80108129 MsG0580028405.01.T01:intron 35.0%
! ATTGTGAATCTAGGATAGTG+TGG - Chr5:80106078-80106097 None:intergenic 35.0%
! GAATACAAAAGCGTGAAGAT+AGG - Chr5:80110172-80110191 None:intergenic 35.0%
! GATAAAATGAAGAGTGTGTC+TGG - Chr5:80106469-80106488 None:intergenic 35.0%
! GATGCAATAGTGGGAAAAAA+AGG + Chr5:80106140-80106159 MsG0580028405.01.T01:intron 35.0%
! GATTTGTTCTTGTAAGGACT+GGG + Chr5:80105753-80105772 MsG0580028405.01.T01:intron 35.0%
! GCGATTTTTCTTATGGGTAT+TGG + Chr5:80105375-80105394 MsG0580028405.01.T01:intron 35.0%
! TAACCTTCTGTGTCATTACA+GGG + Chr5:80108334-80108353 MsG0580028405.01.T01:intron 35.0%
! TTTAGGACTATATGGACATG+CGG - Chr5:80108081-80108100 None:intergenic 35.0%
! TTTCTGAGAGTTAGCGTAAT+GGG - Chr5:80105283-80105302 None:intergenic 35.0%
!! AAGTGGGTTTTGATGCTAAT+AGG + Chr5:80105245-80105264 MsG0580028405.01.T01:CDS 35.0%
!! ACTCTATCTGCTATTTCACA+TGG + Chr5:80106410-80106429 MsG0580028405.01.T01:CDS 35.0%
!! CAAGGTTTGTTAATGGTCAT+TGG + Chr5:80105309-80105328 MsG0580028405.01.T01:intron 35.0%
!! CATACCATAAAGCATTTTCC+AGG - Chr5:80107959-80107978 None:intergenic 35.0%
!! GGTTTTGATGCTAATAGGAA+AGG + Chr5:80105250-80105269 MsG0580028405.01.T01:CDS 35.0%
!! TAAAGCATTTTCCAGGTGTT+TGG - Chr5:80107952-80107971 None:intergenic 35.0%
!! TGATTTGTTCTTGTAAGGAC+TGG + Chr5:80105752-80105771 MsG0580028405.01.T01:intron 35.0%
!! TTTTCTGAGAGTTAGCGTAA+TGG - Chr5:80105284-80105303 None:intergenic 35.0%
!!! AGCTCCCTTCTTTTGTTTTT+TGG + Chr5:80110013-80110032 MsG0580028405.01.T01:three_prime_UTR 35.0%
!!! CTCCCTTCTTTTGTTTTTTG+GGG + Chr5:80110015-80110034 MsG0580028405.01.T01:three_prime_UTR 35.0%
!!! CTTCTTTTGTTTTTTGGGGT+TGG + Chr5:80110019-80110038 MsG0580028405.01.T01:three_prime_UTR 35.0%
!!! CTTTTGCGATATTGACTTGA+AGG + Chr5:80106598-80106617 MsG0580028405.01.T01:intron 35.0%
!!! GCTCCCTTCTTTTGTTTTTT+GGG + Chr5:80110014-80110033 MsG0580028405.01.T01:three_prime_UTR 35.0%
!!! GTATGAGTGTTAGTTTTGTC+CGG - Chr5:80105814-80105833 None:intergenic 35.0%
!!! TCTTTTGTTTTTTGGGGTTG+GGG + Chr5:80110021-80110040 MsG0580028405.01.T01:three_prime_UTR 35.0%
!!! TTTCAGTTTTTTGTGCGTGA+AGG + Chr5:80109952-80109971 MsG0580028405.01.T01:three_prime_UTR 35.0%
!!! TTTTCAGGTCTCTGTTCATT+TGG + Chr5:80109712-80109731 MsG0580028405.01.T01:intron 35.0%
AAAAGGATGTCTGGTTGCAT+TGG - Chr5:80108443-80108462 None:intergenic 40.0%
AAAGAGGTTCTACGAGTAAC+CGG - Chr5:80105091-80105110 None:intergenic 40.0%
AACACCCTTCAAAGCTGAAT+GGG + Chr5:80108795-80108814 MsG0580028405.01.T01:CDS 40.0%
AAGAAACGTGGTAAGAGGAA+AGG + Chr5:80109807-80109826 MsG0580028405.01.T01:CDS 40.0%
ACAACAGCAAGTGACTCTAA+TGG - Chr5:80108925-80108944 None:intergenic 40.0%
ACAACTAATGGTTCCATCTG+AGG - Chr5:80107713-80107732 None:intergenic 40.0%
AGCAGAAAAAGAGGAATCAG+TGG - Chr5:80107439-80107458 None:intergenic 40.0%
AGGACAATCGTCTTCGTATA+TGG + Chr5:80108701-80108720 MsG0580028405.01.T01:CDS 40.0%
ATCGATGAATCCGATGATGA+TGG + Chr5:80109837-80109856 MsG0580028405.01.T01:CDS 40.0%
ATGTTATGCCATGTTTGGGA+AGG + Chr5:80105659-80105678 MsG0580028405.01.T01:intron 40.0%
ATTGAACCTACACAAAGTGG+TGG + Chr5:80109324-80109343 MsG0580028405.01.T01:intron 40.0%
CAAAATCCAAGCAGACTGAA+TGG + Chr5:80109883-80109902 MsG0580028405.01.T01:CDS 40.0%
CAATTTCCATTCAGTCTGCT+TGG - Chr5:80109892-80109911 None:intergenic 40.0%
CACAGAAGGTTAGATATGTC+TGG - Chr5:80108326-80108345 None:intergenic 40.0%
CACATACTCCAAAGGTTTAG+AGG - Chr5:80106695-80106714 None:intergenic 40.0%
CACTTTGAATTGTCCACATC+GGG + Chr5:80106627-80106646 MsG0580028405.01.T01:CDS 40.0%
CCACTTTGAATTGTCCACAT+CGG + Chr5:80106626-80106645 MsG0580028405.01.T01:CDS 40.0%
CGTTCAAACACATACTCCAA+AGG - Chr5:80106703-80106722 None:intergenic 40.0%
GAAGGACGAAAGCAAAATTG+TGG + Chr5:80109767-80109786 MsG0580028405.01.T01:CDS 40.0%
GACGCAATGTTATCAAACAC+CGG + Chr5:80106010-80106029 MsG0580028405.01.T01:intron 40.0%
GCCAAAGGAAAAATCTGAGA+CGG + Chr5:80109737-80109756 MsG0580028405.01.T01:CDS 40.0%
GGACAATCGTCTTCGTATAT+GGG + Chr5:80108702-80108721 MsG0580028405.01.T01:CDS 40.0%
TAACACCCTTCAAAGCTGAA+TGG + Chr5:80108794-80108813 MsG0580028405.01.T01:CDS 40.0%
TAGTAGACGGATAACAAGCT+TGG + Chr5:80107307-80107326 MsG0580028405.01.T01:CDS 40.0%
TATATTGTAGGCGCGCATTT+GGG + Chr5:80108567-80108586 MsG0580028405.01.T01:intron 40.0%
TCTAGTACTCACTCTCTTGT+TGG + Chr5:80109273-80109292 MsG0580028405.01.T01:intron 40.0%
TCTGTTCATTTGGAAGCCAA+AGG + Chr5:80109722-80109741 MsG0580028405.01.T01:CDS 40.0%
TGAGAAGGTTTACGAGAAAG+TGG + Chr5:80107498-80107517 MsG0580028405.01.T01:CDS 40.0%
TGCATCACCATTCCTATGAT+TGG - Chr5:80108372-80108391 None:intergenic 40.0%
TGTTCCAGGCTATTGATCAT+AGG + Chr5:80107184-80107203 MsG0580028405.01.T01:intron 40.0%
TTATAGGTGTGTAAGAAGCC+TGG + Chr5:80105408-80105427 MsG0580028405.01.T01:intron 40.0%
TTGAACCTACACAAAGTGGT+GGG + Chr5:80109325-80109344 MsG0580028405.01.T01:intron 40.0%
! AATGAGAACTTTGGGGAAAG+AGG - Chr5:80105107-80105126 None:intergenic 40.0%
! ACCGTCTCAGATTTTTCCTT+TGG - Chr5:80109741-80109760 None:intergenic 40.0%
! AGGTTTAGAGGTTTTTCTGC+GGG - Chr5:80106683-80106702 None:intergenic 40.0%
! ATGCATGCGACTTCTCTTTT+GGG + Chr5:80110061-80110080 MsG0580028405.01.T01:three_prime_UTR 40.0%
! CATTCAGTCTGCTTGGATTT+TGG - Chr5:80109885-80109904 None:intergenic 40.0%
! CTAACCTTCTGTGTCATTAC+AGG + Chr5:80108333-80108352 MsG0580028405.01.T01:intron 40.0%
! GAGAGTTTTTGCTCGAACTT+AGG + Chr5:80107035-80107054 MsG0580028405.01.T01:intron 40.0%
! GGTGTTTGATAACATTGCGT+CGG - Chr5:80106011-80106030 None:intergenic 40.0%
! GTCGACTCACAGATTGAAAT+CGG - Chr5:80105905-80105924 None:intergenic 40.0%
! GTTGAAAAGTGAGTGTTGCT+AGG + Chr5:80109394-80109413 MsG0580028405.01.T01:intron 40.0%
! TATGCATGCGACTTCTCTTT+TGG + Chr5:80110060-80110079 MsG0580028405.01.T01:three_prime_UTR 40.0%
! TGGTCTGGAATCACACATTT+GGG - Chr5:80107260-80107279 None:intergenic 40.0%
! TTGGTCTGGAATCACACATT+TGG - Chr5:80107261-80107280 None:intergenic 40.0%
!! AGTTGTACTGATTTGGAGAC+TGG + Chr5:80107727-80107746 MsG0580028405.01.T01:CDS 40.0%
!! CAGCTTTGAAGGGTGTTAAA+TGG - Chr5:80108792-80108811 None:intergenic 40.0%
!! TTAGAGTCACTTGCTGTTGT+TGG + Chr5:80108925-80108944 MsG0580028405.01.T01:CDS 40.0%
AAGCTTATTCACCGGACTGA+TGG - Chr5:80109058-80109077 None:intergenic 45.0%
AATGGTTCCATCTGAGGATG+CGG - Chr5:80107707-80107726 None:intergenic 45.0%
ACGTCTACATCCGTGTTTAC+AGG - Chr5:80105786-80105805 None:intergenic 45.0%
ACTATGCACAATTTCTCGGC+TGG - Chr5:80108755-80108774 None:intergenic 45.0%
ACTTAGGCTTACCGTAGGAA+TGG - Chr5:80106740-80106759 None:intergenic 45.0%
AGAAAGGACAACTTGGAGTC+TGG + Chr5:80107470-80107489 MsG0580028405.01.T01:intron 45.0%
AGATACAAGTACAGGGCAGT+TGG + Chr5:80109002-80109021 MsG0580028405.01.T01:CDS 45.0%
ATGCGGTCCAATCATAGGAA+TGG + Chr5:80108362-80108381 MsG0580028405.01.T01:CDS 45.0%
CAAAGCTGAATGGGATCCAA+AGG + Chr5:80108804-80108823 MsG0580028405.01.T01:CDS 45.0%
CCACAAGTCAAAAGGATGTC+TGG - Chr5:80108452-80108471 None:intergenic 45.0%
CCATGTTTGGGAAGGAATTG+AGG + Chr5:80105667-80105686 MsG0580028405.01.T01:intron 45.0%
CCGATGTGGACAATTCAAAG+TGG - Chr5:80106629-80106648 None:intergenic 45.0%
CCTCAATTCCTTCCCAAACA+TGG - Chr5:80105670-80105689 None:intergenic 45.0%
CTATATTGTAGGCGCGCATT+TGG + Chr5:80108566-80108585 MsG0580028405.01.T01:intron 45.0%
CTATGCACAATTTCTCGGCT+GGG - Chr5:80108754-80108773 None:intergenic 45.0%
CTGAGAAGAAACGTGGTAAG+AGG + Chr5:80109802-80109821 MsG0580028405.01.T01:CDS 45.0%
GAAAGGACAACTTGGAGTCT+GGG + Chr5:80107471-80107490 MsG0580028405.01.T01:intron 45.0%
GAACATCACAACCATCAGTC+CGG + Chr5:80109044-80109063 MsG0580028405.01.T01:CDS 45.0%
GAATGACTTAGGCTTACCGT+AGG - Chr5:80106745-80106764 None:intergenic 45.0%
GACATGCGGAGACAGTAAAA+CGG - Chr5:80108067-80108086 None:intergenic 45.0%
GACTGATGGTTGTGATGTTC+GGG - Chr5:80109044-80109063 None:intergenic 45.0%
GATATGCGTCACTTAGAAGC+TGG + Chr5:80108589-80108608 MsG0580028405.01.T01:CDS 45.0%
GCTAAGACATGCCATTCCTA+CGG + Chr5:80106726-80106745 MsG0580028405.01.T01:CDS 45.0%
GGAAAAGCTGAGAAGAAACG+TGG + Chr5:80109795-80109814 MsG0580028405.01.T01:CDS 45.0%
GGACTGATGGTTGTGATGTT+CGG - Chr5:80109045-80109064 None:intergenic 45.0%
GGATGTTATTCTTCGTAGGG+TGG - Chr5:80107337-80107356 None:intergenic 45.0%
GGGGAAAAAGCCTGTAAACA+CGG + Chr5:80105773-80105792 MsG0580028405.01.T01:intron 45.0%
GTCTCCTATGATCAATAGCC+TGG - Chr5:80107191-80107210 None:intergenic 45.0%
GTGATGATATCCTGGCAACT+GGG + Chr5:80109085-80109104 MsG0580028405.01.T01:CDS 45.0%
TAACAACACGCTTGTGCTCA+AGG - Chr5:80108630-80108649 None:intergenic 45.0%
TAACCTTATCTCCCGACAAC+AGG - Chr5:80107358-80107377 None:intergenic 45.0%
TAAGAAGCCTGGTCATGAAG+CGG + Chr5:80105419-80105438 MsG0580028405.01.T01:CDS 45.0%
TAGGAATGGCATGTCTTAGC+TGG - Chr5:80106726-80106745 None:intergenic 45.0%
TATGTCCCACCACTTTGTGT+AGG - Chr5:80109333-80109352 None:intergenic 45.0%
TGAACCTGAATCCTGATGGA+TGG + Chr5:80107767-80107786 MsG0580028405.01.T01:CDS 45.0%
TGATAACAGCGCAACTCACT+TGG - Chr5:80107280-80107299 None:intergenic 45.0%
TGTAAACACGGATGTAGACG+TGG + Chr5:80105785-80105804 MsG0580028405.01.T01:intron 45.0%
! CCATCAGGATTCAGGTTCAT+CGG - Chr5:80107766-80107785 None:intergenic 45.0%
! GGAGCTTGGTAACCTATACA+TGG - Chr5:80109999-80110018 None:intergenic 45.0%
! GGTTTAGAGGTTTTTCTGCG+GGG - Chr5:80106682-80106701 None:intergenic 45.0%
! GTGAATCTAGGATAGTGTGG+CGG - Chr5:80106075-80106094 None:intergenic 45.0%
! TGCATGCGACTTCTCTTTTG+GGG + Chr5:80110062-80110081 MsG0580028405.01.T01:three_prime_UTR 45.0%
! TGGATCCCATTCAGCTTTGA+AGG - Chr5:80108803-80108822 None:intergenic 45.0%
!! AGAAGAAGAAGAAGCACTCG+AGG + Chr5:80105165-80105184 MsG0580028405.01.T01:CDS 45.0%
!! GGATCCCATTCAGCTTTGAA+GGG - Chr5:80108802-80108821 None:intergenic 45.0%
!! TACTGAGCATGGTGTTGTTC+CGG + Chr5:80106654-80106673 MsG0580028405.01.T01:CDS 45.0%
!! TGGAGTCTGGGATTTTGAGA+AGG + Chr5:80107483-80107502 MsG0580028405.01.T01:CDS 45.0%
!!! CCAGACATCCTTTTGACTTG+TGG + Chr5:80108449-80108468 MsG0580028405.01.T01:CDS 45.0%
!!! GGATTTTGGCTTCTTGAGCT+TGG - Chr5:80109871-80109890 None:intergenic 45.0%
AAGAAGCCTGGTCATGAAGC+GGG + Chr5:80105420-80105439 MsG0580028405.01.T01:CDS 50.0%
ATTGTCTCGCTGCTCGACAA+AGG + Chr5:80109908-80109927 MsG0580028405.01.T01:CDS 50.0%
CAATCTGTGAGTCGACTGTG+TGG + Chr5:80105909-80105928 MsG0580028405.01.T01:intron 50.0%
CATCCTGTTGTCGGGAGATA+AGG + Chr5:80107352-80107371 MsG0580028405.01.T01:CDS 50.0%
CATGCCATCCATCAGGATTC+AGG - Chr5:80107774-80107793 None:intergenic 50.0%
CCGATGAACCTGAATCCTGA+TGG + Chr5:80107763-80107782 MsG0580028405.01.T01:CDS 50.0%
CGACCCTGTAATGACACAGA+AGG - Chr5:80108340-80108359 None:intergenic 50.0%
CGTGATGATATCCTGGCAAC+TGG + Chr5:80109084-80109103 MsG0580028405.01.T01:CDS 50.0%
CTTGTGCTCAAGGCTACAGA+GGG - Chr5:80108620-80108639 None:intergenic 50.0%
GTCATTACAGGGTCGACATG+CGG + Chr5:80108345-80108364 MsG0580028405.01.T01:intron 50.0%
GTCTATTCCGCATCCTCAGA+TGG + Chr5:80107697-80107716 MsG0580028405.01.T01:CDS 50.0%
GTTGCCAGGATATCATCACG+TGG - Chr5:80109084-80109103 None:intergenic 50.0%
TCGACATGCGGTCCAATCAT+AGG + Chr5:80108357-80108376 MsG0580028405.01.T01:CDS 50.0%
TTGAAACCCGCTTCATGACC+AGG - Chr5:80105429-80105448 None:intergenic 50.0%
TTTACTAGGGGCCAAACACC+TGG + Chr5:80107938-80107957 MsG0580028405.01.T01:intron 50.0%
! AGGATTCAGGTTCATCGGAG+AGG - Chr5:80107761-80107780 None:intergenic 50.0%
! GGAAAAATCTGAGACGGTCG+AGG + Chr5:80109743-80109762 MsG0580028405.01.T01:CDS 50.0%
! GGTCATGAAGCGGGTTTCAA+GGG + Chr5:80105429-80105448 MsG0580028405.01.T01:CDS 50.0%
! TGAGAAAGGTCTTGTGCTCG+TGG + Chr5:80107990-80108009 MsG0580028405.01.T01:CDS 50.0%
! TGGTCATGAAGCGGGTTTCA+AGG + Chr5:80105428-80105447 MsG0580028405.01.T01:CDS 50.0%
!! AGAAGAAGAAGCACTCGAGG+AGG + Chr5:80105168-80105187 MsG0580028405.01.T01:CDS 50.0%
!! GCAGTTGGTAGCAGAAGTCA+TGG + Chr5:80109017-80109036 MsG0580028405.01.T01:CDS 50.0%
ACAGCGCAACTCACTTGGTC+TGG - Chr5:80107275-80107294 None:intergenic 55.0%
ACCTAGAACTCCCAGTTGCC+AGG - Chr5:80109098-80109117 None:intergenic 55.0%
ACGGATGTAGACGTGGACAC+CGG + Chr5:80105792-80105811 MsG0580028405.01.T01:intron 55.0%
CATCGGGTCACTACTGAGCA+TGG + Chr5:80106643-80106662 MsG0580028405.01.T01:CDS 55.0%
GCTTGTGCTCAAGGCTACAG+AGG - Chr5:80108621-80108640 None:intergenic 55.0%
GTGCTCGTGGCCGATAACTT+TGG + Chr5:80108003-80108022 MsG0580028405.01.T01:CDS 55.0%
TCCTGGCAACTGGGAGTTCT+AGG + Chr5:80109094-80109113 MsG0580028405.01.T01:CDS 55.0%
TGCTCAGTAGTGACCCGATG+TGG - Chr5:80106643-80106662 None:intergenic 55.0%
! ATCTGAGACGGTCGAGGAGA+AGG + Chr5:80109749-80109768 MsG0580028405.01.T01:CDS 55.0%
!! AGAAGAAGCACTCGAGGAGG+AGG + Chr5:80105171-80105190 MsG0580028405.01.T01:CDS 55.0%
TGACCTTGAGGAGACTCGCG+CGG - Chr5:80107861-80107880 None:intergenic 60.0%
! GAGGTTTTTCTGCGGGGTGC+CGG - Chr5:80106676-80106695 None:intergenic 60.0%
TGACCGCGCGAGTCTCCTCA+AGG + Chr5:80107855-80107874 MsG0580028405.01.T01:intron 65.0%
Chromosome Type Strat End Strand Name
Chr5 gene 80105082 80110284 80105082 ID=MsG0580028405.01;Name=MsG0580028405.01
Chr5 mRNA 80105082 80110284 80105082 ID=MsG0580028405.01.T01;Parent=MsG0580028405.01;Name=MsG0580028405.01.T01;_AED=0.31;_eAED=0.32;_QI=0|0.81|0.83|1|0.63|0.75|12|343|589
Chr5 exon 80105082 80105312 80105082 ID=MsG0580028405.01.T01:exon:5720;Parent=MsG0580028405.01.T01
Chr5 exon 80105414 80105569 80105414 ID=MsG0580028405.01.T01:exon:5721;Parent=MsG0580028405.01.T01
Chr5 exon 80106401 80106431 80106401 ID=MsG0580028405.01.T01:exon:5722;Parent=MsG0580028405.01.T01
Chr5 exon 80106620 80106747 80106620 ID=MsG0580028405.01.T01:exon:5723;Parent=MsG0580028405.01.T01
Chr5 exon 80107251 80107373 80107251 ID=MsG0580028405.01.T01:exon:5724;Parent=MsG0580028405.01.T01
Chr5 exon 80107472 80107560 80107472 ID=MsG0580028405.01.T01:exon:5725;Parent=MsG0580028405.01.T01
Chr5 exon 80107672 80107792 80107672 ID=MsG0580028405.01.T01:exon:5726;Parent=MsG0580028405.01.T01
Chr5 exon 80107946 80108037 80107946 ID=MsG0580028405.01.T01:exon:5727;Parent=MsG0580028405.01.T01
Chr5 exon 80108355 80108484 80108355 ID=MsG0580028405.01.T01:exon:5728;Parent=MsG0580028405.01.T01
Chr5 exon 80108577 80108825 80108577 ID=MsG0580028405.01.T01:exon:5729;Parent=MsG0580028405.01.T01
Chr5 exon 80108919 80109115 80108919 ID=MsG0580028405.01.T01:exon:5730;Parent=MsG0580028405.01.T01
Chr5 exon 80109719 80110284 80109719 ID=MsG0580028405.01.T01:exon:5731;Parent=MsG0580028405.01.T01
Chr5 CDS 80105082 80105312 80105082 ID=MsG0580028405.01.T01:cds;Parent=MsG0580028405.01.T01
Chr5 CDS 80105414 80105569 80105414 ID=MsG0580028405.01.T01:cds;Parent=MsG0580028405.01.T01
Chr5 CDS 80106401 80106431 80106401 ID=MsG0580028405.01.T01:cds;Parent=MsG0580028405.01.T01
Chr5 CDS 80106620 80106747 80106620 ID=MsG0580028405.01.T01:cds;Parent=MsG0580028405.01.T01
Chr5 CDS 80107251 80107373 80107251 ID=MsG0580028405.01.T01:cds;Parent=MsG0580028405.01.T01
Chr5 CDS 80107472 80107560 80107472 ID=MsG0580028405.01.T01:cds;Parent=MsG0580028405.01.T01
Chr5 CDS 80107672 80107792 80107672 ID=MsG0580028405.01.T01:cds;Parent=MsG0580028405.01.T01
Chr5 CDS 80107946 80108037 80107946 ID=MsG0580028405.01.T01:cds;Parent=MsG0580028405.01.T01
Chr5 CDS 80108355 80108484 80108355 ID=MsG0580028405.01.T01:cds;Parent=MsG0580028405.01.T01
Chr5 CDS 80108577 80108825 80108577 ID=MsG0580028405.01.T01:cds;Parent=MsG0580028405.01.T01
Chr5 CDS 80108919 80109115 80108919 ID=MsG0580028405.01.T01:cds;Parent=MsG0580028405.01.T01
Chr5 CDS 80109719 80109941 80109719 ID=MsG0580028405.01.T01:cds;Parent=MsG0580028405.01.T01
Chr5 three_prime_UTR 80109942 80110284 80109942 ID=MsG0580028405.01.T01:three_prime_utr;Parent=MsG0580028405.01.T01
Gene Sequence

>MsG0580028405.01.T01

ATGGCACCGGTTACTCGTAGAACCTCTTTCCCCAAAGTTCTCATTGAAAGAGACTCTGACTCTGAACAGAGTTCTTCTGACGAAGAAGAAGAAGAAGCACTCGAGGAGGAGGAAGAAGAAGAAGAAAATGGGGTTGCTGAAAATGAAAAGATTGAGAAACTGGAAGTGGGTTTTGATGCTAATAGGAAAGGGAAAAAACCCATTACGCTAACTCTCAGAAAAGTTTGCAAGGTGTGTAAGAAGCCTGGTCATGAAGCGGGTTTCAAGGGTGCTACTTACATTGATTGCCCTATGAAACCTTGTTTTCTTTGTAAAACTCCTGGTAAGTTGAATATCAACATTTCTCATATTGTTTGTATGGGTATTTTTATTTTACTAGTGAATGTGTTTTCTGCAACTCTATCTGCTATTTCACATGGACATACCACTTTGAATTGTCCACATCGGGTCACTACTGAGCATGGTGTTGTTCCGGCACCCCGCAGAAAAACCTCTAAACCTTTGGAGTATGTGTTTGAACGCCAGCTAAGACATGCCATTCCTACGATCAAGCCCAAATGTGTGATTCCAGACCAAGTGAGTTGCGCTGTTATCAGATATCATAGTAGACGGATAACAAGCTTGGAGTTCCACCCTACGAAGAATAACATCCTGTTGTCGGGAGATAAGAAAGGACAACTTGGAGTCTGGGATTTTGAGAAGGTTTACGAGAAAGTGGTCTATGAGAACATACACTCTTGTATACTGAACAACATGAAGTTTAATCCTACAAATGATTGTATGGTCTATTCCGCATCCTCAGATGGAACCATTAGTTGTACTGATTTGGAGACTGGAATATCATCCTCTCCGATGAACCTGAATCCTGATGGATGGCATGGGCCAAACACCTGGAAAATGCTTTATGGTATGGATATTCACTATGAGAAAGGTCTTGTGCTCGTGGCCGATAACTTTGGTTTTCTTCACTTGGTCGACATGCGGTCCAATCATAGGAATGGTGATGCAGTTTTGATCCATAAAAAAGGTAGCAAAGTTACTGGTATCGATTGCAATCCAATGCAACCAGACATCCTTTTGACTTGTGGAAATGATCATTATGCGCGCATTTGGGATATGCGTCACTTAGAAGCTGGATCATCCCTCTGTAGCCTTGAGCACAAGCGTGTTGTTAACTCTGCATATTTCTCTCCAATAACTGGAAACAAAATTCTTACTACTTCACAGGACAATCGTCTTCGTATATGGGATTCTATCTTTGGTAATATGGCATCTCCCAGCCGAGAAATTGTGCATAGTCATGATTTCAATCGCCATTTAACACCCTTCAAAGCTGAATGGGATCCAAAGGATCCATTAGAGTCACTTGCTGTTGTTGGCCGTTATATAAGTGAAAATTTTAATGGCACAGCCCTGCATCCTATTGATTTTATAGATACAAGTACAGGGCAGTTGGTAGCAGAAGTCATGGACCCGAACATCACAACCATCAGTCCGGTGAATAAGCTTCATCCACGTGATGATATCCTGGCAACTGGGAGTTCTAGGTCTCTGTTCATTTGGAAGCCAAAGGAAAAATCTGAGACGGTCGAGGAGAAGGACGAAAGCAAAATTGTGGTTTGTGGAAAAGCTGAGAAGAAACGTGGTAAGAGGAAAGGTGATAACATCGATGAATCCGATGATGATGGATTCATTTCCAAGCTCAAGAAGCCAAAATCCAAGCAGACTGAATGGAAATTGTCTCGCTGCTCGACAAAGGATAATCGCTAA
Protein sequence

>MsG0580028405.01.T01

MAPVTRRTSFPKVLIERDSDSEQSSSDEEEEEALEEEEEEEENGVAENEKIEKLEVGFDANRKGKKPITLTLRKVCKVCKKPGHEAGFKGATYIDCPMKPCFLCKTPGKLNINISHIVCMGIFILLVNVFSATLSAISHGHTTLNCPHRVTTEHGVVPAPRRKTSKPLEYVFERQLRHAIPTIKPKCVIPDQVSCAVIRYHSRRITSLEFHPTKNNILLSGDKKGQLGVWDFEKVYEKVVYENIHSCILNNMKFNPTNDCMVYSASSDGTISCTDLETGISSSPMNLNPDGWHGPNTWKMLYGMDIHYEKGLVLVADNFGFLHLVDMRSNHRNGDAVLIHKKGSKVTGIDCNPMQPDILLTCGNDHYARIWDMRHLEAGSSLCSLEHKRVVNSAYFSPITGNKILTTSQDNRLRIWDSIFGNMASPSREIVHSHDFNRHLTPFKAEWDPKDPLESLAVVGRYISENFNGTALHPIDFIDTSTGQLVAEVMDPNITTISPVNKLHPRDDILATGSSRSLFIWKPKEKSETVEEKDESKIVVCGKAEKKRGKRKGDNIDESDDDGFISKLKKPKSKQTEWKLSRCSTKDNR*