AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0580028008.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0580028008.01.T01 MTR_5g070310 91.243 571 36 2 1 570 1 558 0.0 1003
MsG0580028008.01.T01 MTR_4g116900 25.503 298 187 13 185 478 168 434 2.53e-13 72.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0580028008.01.T01 AT5G58760 69.025 523 139 5 5 522 6 510 0.0 735
MsG0580028008.01.T01 AT5G58760 72.235 425 105 1 98 522 1 412 0.0 660
MsG0580028008.01.T01 AT1G80710 25.000 344 206 14 178 505 209 516 1.21e-16 83.6

Find 143 sgRNAs with CRISPR-Local

Find 337 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CATTCAGTCTGCTTGGATTT+TGG 0.092885 5:+73107439 None:intergenic
CGTATATGGGATTCTATCTT+TGG 0.201004 5:-73108606 MsG0580028008.01.T01:CDS
GGATTCTATCTTTGGTAATA+TGG 0.203494 5:-73108598 MsG0580028008.01.T01:CDS
TCTTCCGTATAGAGAAAATT+TGG 0.235162 5:-73107100 MsG0580028008.01.T01:three_prime_UTR
AGGACAATCGTCTTCGTATA+TGG 0.237095 5:-73108620 MsG0580028008.01.T01:CDS
AACACCTGGAAAATGCTTTA+TGG 0.242204 5:-73109368 MsG0580028008.01.T01:CDS
TATGCATGCGACTTCTCTTT+TGG 0.245861 5:-73107261 MsG0580028008.01.T01:three_prime_UTR
CAAAGAAAACAAGGTTTCAT+AGG 0.255454 5:+73111847 None:intergenic
CATGCCATCCATCAGGATTC+AGG 0.269004 5:+73109549 None:intergenic
AACCATTAGTTGTACTGATT+TGG 0.271261 5:-73109600 MsG0580028008.01.T01:CDS
CCTATACATGGTTAGCAGTT+TGG 0.282478 5:+73107337 None:intergenic
CAGCTTTGAAGGGTGTTAAA+TGG 0.287007 5:+73108532 None:intergenic
CACATACTCCAAAGGTTTAG+AGG 0.287821 5:+73110627 None:intergenic
TCCTGGCAACTGGGAGTTCT+AGG 0.318166 5:-73108227 MsG0580028008.01.T01:intron
CTATATTGTAGGCGCGCATT+TGG 0.318325 5:-73108755 MsG0580028008.01.T01:intron
GCATATTTCTCTCCAATAAC+TGG 0.326448 5:-73108666 MsG0580028008.01.T01:CDS
TCTCTTTCAATGAGAACTTT+GGG 0.330765 5:+73112206 None:intergenic
AAATGAAAAGATTGAGAAAC+TGG 0.345976 5:-73112096 MsG0580028008.01.T01:CDS
TTGGTCTGGAATCACACATT+TGG 0.346565 5:+73110062 None:intergenic
TGGATCCCATTCAGCTTTGA+AGG 0.350384 5:+73108521 None:intergenic
CATGACTATGCACAATTTCT+CGG 0.350606 5:+73108565 None:intergenic
TTAGAGTCACTTGCTGTTGT+TGG 0.357110 5:-73108396 MsG0580028008.01.T01:CDS
AGAAAGGACAACTTGGAGTC+TGG 0.357633 5:-73109850 MsG0580028008.01.T01:CDS
ATTCCTCGTATTGTTTGTAT+TGG 0.372892 5:-73111796 MsG0580028008.01.T01:intron
GGACTGATGGTTGTGATGTT+CGG 0.374930 5:+73108279 None:intergenic
TTTCTGAGAGTTAGCGTAAT+GGG 0.378118 5:+73112038 None:intergenic
GTCTCTTTCAATGAGAACTT+TGG 0.378205 5:+73112205 None:intergenic
GTGAAGAAAACCAAAGTTAT+CGG 0.387021 5:+73109307 None:intergenic
CGTGATGATATCCTGGCAAC+TGG 0.388271 5:-73108237 MsG0580028008.01.T01:CDS
TGGTCTGGAATCACACATTT+GGG 0.388716 5:+73110063 None:intergenic
TACTGAGCATGGTGTTGTTC+CGG 0.398936 5:-73110665 MsG0580028008.01.T01:CDS
CTTGTATCTATAAAATCAAT+AGG 0.399051 5:+73108333 None:intergenic
TAATCCTACAAATGATTGTA+TGG 0.401174 5:-73109645 MsG0580028008.01.T01:CDS
CAATTTCCATTCAGTCTGCT+TGG 0.404544 5:+73107432 None:intergenic
TAGGTGACTTCTCTTTGTAT+AGG 0.406531 5:-73107203 MsG0580028008.01.T01:three_prime_UTR
GACTGATGGTTGTGATGTTC+GGG 0.410135 5:+73108280 None:intergenic
TGCATCACCATTCCTATGAT+TGG 0.418131 5:+73108952 None:intergenic
CCAAACTGCTAACCATGTAT+AGG 0.419430 5:-73107337 MsG0580028008.01.T01:three_prime_UTR
CCACAAGTCAAAAGGATGTC+TGG 0.420331 5:+73108872 None:intergenic
CATCCTGTTGTCGGGAGATA+AGG 0.421944 5:-73109968 MsG0580028008.01.T01:intron
CTCCAAATCAGTACAACTAA+TGG 0.423674 5:+73109598 None:intergenic
TATATTGTAGGCGCGCATTT+GGG 0.425675 5:-73108754 MsG0580028008.01.T01:intron
TCGACATGCGGTCCAATCAT+AGG 0.436742 5:-73108964 MsG0580028008.01.T01:CDS
CACTTTGAATTGTCCACATC+GGG 0.441106 5:-73110692 MsG0580028008.01.T01:CDS
CGTATAGAGAAAATTTGGTT+GGG 0.444250 5:-73107095 MsG0580028008.01.T01:three_prime_UTR
AGTTGTACTGATTTGGAGAC+TGG 0.447052 5:-73109593 MsG0580028008.01.T01:CDS
GAATACAAAAGCGTGAAGAT+AGG 0.449811 5:+73107152 None:intergenic
CTGGAAAATGCTTTATGGTA+TGG 0.452127 5:-73109363 MsG0580028008.01.T01:CDS
TAGACCATACAATCATTTGT+AGG 0.454241 5:+73109641 None:intergenic
TAACCTTATCTCCCGACAAC+AGG 0.455373 5:+73109965 None:intergenic
ATCTGAGACGGTCGAGGAGA+AGG 0.459772 5:-73107572 MsG0580028008.01.T01:CDS
GGACAATCGTCTTCGTATAT+GGG 0.460807 5:-73108619 MsG0580028008.01.T01:CDS
ACAGCGCAACTCACTTGGTC+TGG 0.463787 5:+73110048 None:intergenic
AATGAGAACTTTGGGGAAAG+AGG 0.464363 5:+73112214 None:intergenic
CTATCTATTGGCAAATCTGT+TGG 0.470268 5:+73107049 None:intergenic
CCGTATAGAGAAAATTTGGT+TGG 0.472294 5:-73107096 MsG0580028008.01.T01:three_prime_UTR
TAACACCCTTCAAAGCTGAA+TGG 0.473837 5:-73108527 MsG0580028008.01.T01:CDS
ACAACAGCAAGTGACTCTAA+TGG 0.474300 5:+73108399 None:intergenic
AAAAGGATGTCTGGTTGCAT+TGG 0.474611 5:+73108881 None:intergenic
TAGGAATGGCATGTCTTAGC+TGG 0.475369 5:+73110596 None:intergenic
TATCTATTGGCAAATCTGTT+GGG 0.478194 5:+73107050 None:intergenic
ACCTAGAACTCCCAGTTGCC+AGG 0.480432 5:+73108226 None:intergenic
CTATAAAATCAATAGGATGC+AGG 0.481005 5:+73108340 None:intergenic
AATATTACATGCCATCCATC+AGG 0.482629 5:+73109542 None:intergenic
AAAGAGGTTCTACGAGTAAC+CGG 0.483672 5:+73112230 None:intergenic
GATCATTTCCACAAGTCAAA+AGG 0.485595 5:+73108864 None:intergenic
GAAAGGACAACTTGGAGTCT+GGG 0.485905 5:-73109849 MsG0580028008.01.T01:CDS
AACACCCTTCAAAGCTGAAT+GGG 0.487045 5:-73108526 MsG0580028008.01.T01:CDS
AAGAATAACATCCTGTTGTC+GGG 0.488018 5:-73109976 MsG0580028008.01.T01:CDS
GTGCTCGTGGCCGATAACTT+TGG 0.491495 5:-73109317 MsG0580028008.01.T01:CDS
TTTACTAGGGGCCAAACACC+TGG 0.499445 5:-73109382 MsG0580028008.01.T01:intron
ACTATGCACAATTTCTCGGC+TGG 0.500089 5:+73108569 None:intergenic
AAAGAAAACAAGGTTTCATA+GGG 0.501938 5:+73111848 None:intergenic
TATAAAATCAATAGGATGCA+GGG 0.504604 5:+73108341 None:intergenic
GTATCATATGCATATTAGAT+TGG 0.505097 5:-73107226 MsG0580028008.01.T01:three_prime_UTR
ATCGATGAATCCGATGATGA+TGG 0.505501 5:-73107484 MsG0580028008.01.T01:CDS
GAAGAATAACATCCTGTTGT+CGG 0.505802 5:-73109977 MsG0580028008.01.T01:CDS
TTAAAACCCGCTTCATGACC+AGG 0.507060 5:+73111892 None:intergenic
CATATGCATATTAGATTGGT+AGG 0.510662 5:-73107222 MsG0580028008.01.T01:three_prime_UTR
CTGAGAAGAAACGTGGTAAG+AGG 0.511583 5:-73107519 MsG0580028008.01.T01:CDS
TCATAAAAGAAAGGACAACT+TGG 0.517742 5:-73109857 MsG0580028008.01.T01:intron
GGATCCCATTCAGCTTTGAA+GGG 0.518856 5:+73108522 None:intergenic
GAAAGCAAAATTGTGGTTTG+TGG 0.518880 5:-73107547 MsG0580028008.01.T01:CDS
TCATCCACGTGATGATATCC+TGG 0.520328 5:-73108244 MsG0580028008.01.T01:CDS
TAACAACACGCTTGTGCTCA+AGG 0.528107 5:+73108694 None:intergenic
AAGCTTATTCACCGGACTGA+TGG 0.528676 5:+73108266 None:intergenic
GTCTATTCCGCATCCTCAGA+TGG 0.528780 5:-73109623 MsG0580028008.01.T01:CDS
TGATAACAGCGCAACTCACT+TGG 0.530316 5:+73110043 None:intergenic
AAAGATTGAGAAACTGGAAG+TGG 0.531341 5:-73112090 MsG0580028008.01.T01:CDS
ATGGATATTCACTATGAGAA+AGG 0.532012 5:-73109344 MsG0580028008.01.T01:CDS
CAAAATCCAAGCAGACTGAA+TGG 0.532156 5:-73107438 MsG0580028008.01.T01:CDS
CTCTTTCAATGAGAACTTTG+GGG 0.535912 5:+73112207 None:intergenic
TGAGAAGGTTTACGAGAAAG+TGG 0.536172 5:-73109822 MsG0580028008.01.T01:CDS
CTATGCACAATTTCTCGGCT+GGG 0.540395 5:+73108570 None:intergenic
CCATCAGGATTCAGGTTCAT+CGG 0.543513 5:+73109557 None:intergenic
AAGAAGCCTGGTCATGAAGC+GGG 0.545678 5:-73111898 MsG0580028008.01.T01:CDS
CAAAATTCTTACTACGTCAC+AGG 0.548895 5:-73108640 MsG0580028008.01.T01:CDS
AACTCTCAGAAAAGTTTGCA+AGG 0.549049 5:-73112027 MsG0580028008.01.T01:intron
GATATGCGTCACTTAGAAGC+TGG 0.550288 5:-73108732 MsG0580028008.01.T01:CDS
AAGATTGAGAAACTGGAAGT+GGG 0.551746 5:-73112089 MsG0580028008.01.T01:CDS
CCGATGAACCTGAATCCTGA+TGG 0.557467 5:-73109557 MsG0580028008.01.T01:CDS
AAGAAACGTGGTAAGAGGAA+AGG 0.563572 5:-73107514 MsG0580028008.01.T01:CDS
TAGTAGACGGATAACAAGCT+TGG 0.565758 5:-73110013 MsG0580028008.01.T01:CDS
TTATAGGTGTGTAAGAAGCC+TGG 0.566694 5:-73111910 MsG0580028008.01.T01:intron
ACAGGATGTTATTCTTCGTA+GGG 0.566721 5:+73109983 None:intergenic
GCAGTTGGTAGCAGAAGTCA+TGG 0.572898 5:-73108304 MsG0580028008.01.T01:CDS
AATGGTTCCATCTGAGGATG+CGG 0.574097 5:+73109616 None:intergenic
ACAACTAATGGTTCCATCTG+AGG 0.576667 5:+73109610 None:intergenic
AGATACAAGTACAGGGCAGT+TGG 0.578810 5:-73108319 MsG0580028008.01.T01:CDS
TGAGAAAGGTCTTGTGCTCG+TGG 0.581673 5:-73109330 MsG0580028008.01.T01:CDS
GGAAATGAATCCATCATCAT+CGG 0.582701 5:+73107474 None:intergenic
TCTGTTCATTTGGAAGCCAA+AGG 0.589673 5:-73107599 MsG0580028008.01.T01:CDS
CGTGGATGAAGCTTATTCAC+CGG 0.591688 5:+73108258 None:intergenic
TCGGTTCTTTAACATGGCAC+CGG 0.592131 5:-73112249 None:intergenic
CAAAGCTGAATGGGATCCAA+AGG 0.592946 5:-73108517 MsG0580028008.01.T01:intron
GAACATCACAACCATCAGTC+CGG 0.595957 5:-73108277 MsG0580028008.01.T01:CDS
ACTTAGGCTTACCGTAGGAA+TGG 0.598093 5:+73110582 None:intergenic
ATGCGGTCCAATCATAGGAA+TGG 0.598179 5:-73108959 MsG0580028008.01.T01:CDS
GGATGTTATTCTTCGTAGGG+TGG 0.599457 5:+73109986 None:intergenic
ATTGTCTCGCTGCTCGACAA+AGG 0.600055 5:-73107413 MsG0580028008.01.T01:CDS
CTGGTTGCATTGGATTGCAA+TGG 0.602433 5:+73108891 None:intergenic
TAAGAAGCCTGGTCATGAAG+CGG 0.617194 5:-73111899 MsG0580028008.01.T01:CDS
CATCGGGTCACTACTGAGCA+TGG 0.620894 5:-73110676 MsG0580028008.01.T01:CDS
CGTTCAAACACATACTCCAA+AGG 0.622066 5:+73110619 None:intergenic
TTATCAGATATCATAGTAGA+CGG 0.622532 5:-73110026 MsG0580028008.01.T01:CDS
GTGATGATATCCTGGCAACT+GGG 0.623672 5:-73108236 MsG0580028008.01.T01:CDS
AACAGGATGTTATTCTTCGT+AGG 0.624223 5:+73109982 None:intergenic
GAAGGACGAAAGCAAAATTG+TGG 0.625614 5:-73107554 MsG0580028008.01.T01:CDS
CCACTTTGAATTGTCCACAT+CGG 0.628827 5:-73110693 MsG0580028008.01.T01:CDS
TGCTCAGTAGTGACCCGATG+TGG 0.633127 5:+73110679 None:intergenic
GTCATTACAGGGTCGACATG+CGG 0.635357 5:-73108976 MsG0580028008.01.T01:intron
AGAAGAAGAAGCACTCGAGG+AGG 0.636304 5:-73112150 MsG0580028008.01.T01:CDS
GCTAAGACATGCCATTCCTA+CGG 0.637351 5:-73110593 MsG0580028008.01.T01:intron
GGAGCTTGGTAACCTATACA+TGG 0.640719 5:+73107325 None:intergenic
GCTTGTGCTCAAGGCTACAG+AGG 0.642505 5:+73108703 None:intergenic
AGAAGAAGAAGAAGCACTCG+AGG 0.642739 5:-73112153 MsG0580028008.01.T01:CDS
TGAACCTGAATCCTGATGGA+TGG 0.648338 5:-73109553 MsG0580028008.01.T01:CDS
CTTGTGCTCAAGGCTACAGA+GGG 0.650690 5:+73108704 None:intergenic
AGGATTCAGGTTCATCGGAG+AGG 0.675833 5:+73109562 None:intergenic
CCGATGTGGACAATTCAAAG+TGG 0.705167 5:+73110693 None:intergenic
GGAAAAGCTGAGAAGAAACG+TGG 0.725862 5:-73107526 MsG0580028008.01.T01:CDS
ATACCAATACAAACAATACG+AGG 0.743762 5:+73111793 None:intergenic
GTTGCCAGGATATCATCACG+TGG 0.762098 5:+73108240 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATAAGAACAATTTAATTAT+TGG + Chr5:73109066-73109085 None:intergenic 10.0%
!! ATAATTTAAGAAAAAACATT+TGG + Chr5:73109784-73109803 None:intergenic 10.0%
!!! TAAAATTTTCACTTATATAA+CGG + Chr5:73110925-73110944 None:intergenic 10.0%
!!! TATATAAGTGAAAATTTTAA+TGG - Chr5:73110926-73110945 MsG0580028008.01.T01:intron 10.0%
!! AAGCTATATTATTAATCTTA+AGG - Chr5:73111641-73111660 MsG0580028008.01.T01:intron 15.0%
!! AATCAAAATTTCAACTTTAA+AGG + Chr5:73111415-73111434 None:intergenic 15.0%
!! AGCTATATTATTAATCTTAA+GGG - Chr5:73111642-73111661 MsG0580028008.01.T01:intron 15.0%
!! ATGTAATTTACAGTAATAAT+AGG + Chr5:73109356-73109375 None:intergenic 15.0%
!! ATTCTTAAAAAGATAAATGT+TGG + Chr5:73110214-73110233 None:intergenic 15.0%
!! TATACAAATAAAAAAGGAAA+TGG + Chr5:73108296-73108315 None:intergenic 15.0%
!! TTTGTTAATTAGATATACAT+AGG - Chr5:73111590-73111609 MsG0580028008.01.T01:intron 15.0%
!!! AGTTTTCCTATTAAAAAATT+AGG + Chr5:73108194-73108213 None:intergenic 15.0%
!!! ATATTTTAAAAGAATGACTT+AGG + Chr5:73108732-73108751 None:intergenic 15.0%
!!! TTGAATATGTTTCTTTTAAT+TGG - Chr5:73110116-73110135 MsG0580028008.01.T01:intron 15.0%
!!! TTTTAATTGAAAAACTTTGT+AGG - Chr5:73109625-73109644 MsG0580028008.01.T01:CDS 15.0%
!! AAAAAAATTCATAACTACGA+AGG + Chr5:73110158-73110177 None:intergenic 20.0%
!! AAAAAATTCATAACTACGAA+GGG + Chr5:73110157-73110176 None:intergenic 20.0%
!! AAAATAAGTAGAAACGAAAA+GGG + Chr5:73110845-73110864 None:intergenic 20.0%
!! AATATTGTTTATGTAATTGC+AGG - Chr5:73110871-73110890 MsG0580028008.01.T01:intron 20.0%
!! ATAATTACATGACTGAAAAA+AGG + Chr5:73108906-73108925 None:intergenic 20.0%
!! CTGATAATAGTTTAAGAAAA+TGG - Chr5:73107811-73107830 MsG0580028008.01.T01:intron 20.0%
!! CTTGTATCTATAAAATCAAT+AGG + Chr5:73110965-73110984 None:intergenic 20.0%
!! GAACTTGAATATGTATAAAA+AGG + Chr5:73110472-73110491 None:intergenic 20.0%
!! GTTGCATATACAAATAAAAA+AGG + Chr5:73108302-73108321 None:intergenic 20.0%
!! TAAAATAAGTAGAAACGAAA+AGG + Chr5:73110846-73110865 None:intergenic 20.0%
!! TAATTACATGACTGAAAAAA+GGG + Chr5:73108905-73108924 None:intergenic 20.0%
!! TCCACAATGAAAATATTAAA+AGG + Chr5:73109039-73109058 None:intergenic 20.0%
!! TCCATATAAAATCATCTTTA+AGG + Chr5:73107670-73107689 None:intergenic 20.0%
!! TGAATGATACATAAACATTA+TGG + Chr5:73109136-73109155 None:intergenic 20.0%
!!! AATATATTTTGCTATAATGC+CGG + Chr5:73108008-73108027 None:intergenic 20.0%
!!! ACATGACCTAATTTTTTAAT+AGG - Chr5:73108185-73108204 MsG0580028008.01.T01:intron 20.0%
!!! ATGAATTTTTTTCTTGGTTA+GGG - Chr5:73110166-73110185 MsG0580028008.01.T01:intron 20.0%
!!! ATTTTATAGATACAAGTACA+GGG - Chr5:73110969-73110988 MsG0580028008.01.T01:intron 20.0%
!!! GTAGTTATGAATTTTTTTCT+TGG - Chr5:73110160-73110179 MsG0580028008.01.T01:intron 20.0%
!!! GTTACTTGATATAATTTTTC+AGG - Chr5:73111671-73111690 MsG0580028008.01.T01:intron 20.0%
!!! TATGAATTTTTTTCTTGGTT+AGG - Chr5:73110165-73110184 MsG0580028008.01.T01:intron 20.0%
!!! TATTACATTTTAGGACTATA+TGG + Chr5:73110063-73110082 None:intergenic 20.0%
!!! TCCTTAAAGATGATTTTATA+TGG - Chr5:73107666-73107685 MsG0580028008.01.T01:intron 20.0%
!!! TCCTTTTAATATTTTCATTG+TGG - Chr5:73109035-73109054 MsG0580028008.01.T01:intron 20.0%
!!! TGTATGTGTTATTTTTACTA+GGG - Chr5:73109900-73109919 MsG0580028008.01.T01:intron 20.0%
!!! TTGTATGTGTTATTTTTACT+AGG - Chr5:73109899-73109918 MsG0580028008.01.T01:intron 20.0%
!!! TTTATTGATTAGCAATATGA+TGG - Chr5:73108459-73108478 MsG0580028008.01.T01:intron 20.0%
!!! TTTGATTTACAAAATTGCAA+GGG - Chr5:73111428-73111447 MsG0580028008.01.T01:intron 20.0%
!!! TTTTGATTTACAAAATTGCA+AGG - Chr5:73111427-73111446 MsG0580028008.01.T01:intron 20.0%
! AAAAATGTTGTGTTTGTTTG+AGG - Chr5:73107603-73107622 MsG0580028008.01.T01:CDS 25.0%
! AAAGAAAACAAGGTTTCATA+GGG + Chr5:73107450-73107469 None:intergenic 25.0%
! AAAGATAAATGTTGGAAAGA+TGG + Chr5:73110206-73110225 None:intergenic 25.0%
! AAAGGCTTAAAAATTTGATG+AGG + Chr5:73111397-73111416 None:intergenic 25.0%
! AAATGAAAAGATTGAGAAAC+TGG - Chr5:73107199-73107218 MsG0580028008.01.T01:three_prime_UTR 25.0%
! AAGAAGAAGAAGAAGAAAAT+GGG - Chr5:73107168-73107187 MsG0580028008.01.T01:three_prime_UTR 25.0%
! CAAAATGGTTTCTATATTGT+AGG - Chr5:73110529-73110548 MsG0580028008.01.T01:intron 25.0%
! CAATATGGTATATTGTGATT+TGG - Chr5:73108839-73108858 MsG0580028008.01.T01:intron 25.0%
! CTGCTTTAATCATAAAAGAA+AGG - Chr5:73109429-73109448 MsG0580028008.01.T01:intron 25.0%
! GAAAATGAACAATTACATGA+AGG + Chr5:73109563-73109582 None:intergenic 25.0%
! GTATCATATGCATATTAGAT+TGG - Chr5:73112069-73112088 MsG0580028008.01.T01:CDS 25.0%
! GTTGAAAAGTTTGCATATTA+CGG + Chr5:73108248-73108267 None:intergenic 25.0%
! TAAGCCTTCAATTTATGAAT+AGG + Chr5:73108989-73109008 None:intergenic 25.0%
! TAATCCTACAAATGATTGTA+TGG - Chr5:73109650-73109669 MsG0580028008.01.T01:CDS 25.0%
! TATAAAATCAATAGGATGCA+GGG + Chr5:73110957-73110976 None:intergenic 25.0%
! TATGATTAAAGCAGAAAAAG+AGG + Chr5:73109423-73109442 None:intergenic 25.0%
! TCATATATGAAGGACTAAAT+AGG + Chr5:73109111-73109130 None:intergenic 25.0%
! TTAAACAAAAAAGCTACCTT+TGG + Chr5:73110797-73110816 None:intergenic 25.0%
! TTATCAGATATCATAGTAGA+CGG - Chr5:73109269-73109288 MsG0580028008.01.T01:intron 25.0%
! TTCTGTATCCATACTATTAA+AGG + Chr5:73111622-73111641 None:intergenic 25.0%
!! AATTGGTTTCATATATGACA+TGG + Chr5:73110271-73110290 None:intergenic 25.0%
!! ATCTTTTGTCATACATAGAA+AGG + Chr5:73111170-73111189 None:intergenic 25.0%
!! CTGTTTTATGTGTTTCAATA+TGG - Chr5:73108824-73108843 MsG0580028008.01.T01:intron 25.0%
!! GATGATTTTATATGGAACAA+AGG - Chr5:73107674-73107693 MsG0580028008.01.T01:intron 25.0%
!! GATTTTATAGATACAAGTAC+AGG - Chr5:73110968-73110987 MsG0580028008.01.T01:intron 25.0%
!! TTTAGCATTCACTCTTTTAT+TGG + Chr5:73111342-73111361 None:intergenic 25.0%
!!! AGAATTTTGTTTCCAGTTAT+TGG + Chr5:73110644-73110663 None:intergenic 25.0%
!!! ATGATTGATTTGTTCTTGTA+AGG - Chr5:73107723-73107742 MsG0580028008.01.T01:intron 25.0%
!!! CTTTAGTTTTGAAGAATGTT+TGG - Chr5:73108761-73108780 MsG0580028008.01.T01:intron 25.0%
!!! GTATGTGTTATTTTTACTAG+GGG - Chr5:73109901-73109920 MsG0580028008.01.T01:intron 25.0%
!!! TAACTTTGCTACCTTTTTTA+TGG + Chr5:73110377-73110396 None:intergenic 25.0%
!!! TCTTGTTGGTTTAAAACATT+GGG - Chr5:73111261-73111280 MsG0580028008.01.T01:intron 25.0%
!!! TGTTGGAATTTTGTTGTTAT+AGG - Chr5:73107369-73107388 MsG0580028008.01.T01:three_prime_UTR 25.0%
!!! TTTGATTTTACTAGTGAATG+TGG - Chr5:73107524-73107543 MsG0580028008.01.T01:CDS 25.0%
AAAAAAGGTAGCAAAGTTAC+TGG - Chr5:73110378-73110397 MsG0580028008.01.T01:intron 30.0%
AAAATTGAACCTACACAAAG+TGG - Chr5:73111295-73111314 MsG0580028008.01.T01:intron 30.0%
AACCCCAAAAAACAAAAGAA+GGG + Chr5:73111994-73112013 None:intergenic 30.0%
ACGATTAGTATGATTATCTG+AGG + Chr5:73111107-73111126 None:intergenic 30.0%
ACTATCCTAGATTCACAATT+AGG - Chr5:73108055-73108074 MsG0580028008.01.T01:intron 30.0%
AGAAGAAGAAGAAGAAAATG+GGG - Chr5:73107169-73107188 MsG0580028008.01.T01:three_prime_UTR 30.0%
ATACCAATACAAACAATACG+AGG + Chr5:73107505-73107524 None:intergenic 30.0%
ATGGATATTCACTATGAGAA+AGG - Chr5:73109951-73109970 MsG0580028008.01.T01:intron 30.0%
ATTACCCTAATTGTGAATCT+AGG + Chr5:73108063-73108082 None:intergenic 30.0%
ATTCACAATTAGGGTAATAG+TGG - Chr5:73108065-73108084 MsG0580028008.01.T01:intron 30.0%
ATTCCTCGTATTGTTTGTAT+TGG - Chr5:73107499-73107518 MsG0580028008.01.T01:CDS 30.0%
CAAAGAAAACAAGGTTTCAT+AGG + Chr5:73107451-73107470 None:intergenic 30.0%
CACACCTATTCATAAATTGA+AGG - Chr5:73108982-73109001 MsG0580028008.01.T01:intron 30.0%
CAGTGTAAACGAAAAAGTAA+TGG + Chr5:73108870-73108889 None:intergenic 30.0%
CATATGCATATTAGATTGGT+AGG - Chr5:73112073-73112092 MsG0580028008.01.T01:CDS 30.0%
CATTATGGACTCATATATGA+AGG + Chr5:73109121-73109140 None:intergenic 30.0%
CGTATAGAGAAAATTTGGTT+GGG - Chr5:73112200-73112219 MsG0580028008.01.T01:CDS 30.0%
CTATAAAATCAATAGGATGC+AGG + Chr5:73110958-73110977 None:intergenic 30.0%
CTATAGCCAACAAAATTTGA+TGG + Chr5:73110093-73110112 None:intergenic 30.0%
CTATCCTAGATTCACAATTA+GGG - Chr5:73108056-73108075 MsG0580028008.01.T01:intron 30.0%
CTTCAATTTATGAATAGGTG+TGG + Chr5:73108984-73109003 None:intergenic 30.0%
GAAGAAGAAGAAGAAGAAAA+TGG - Chr5:73107167-73107186 MsG0580028008.01.T01:three_prime_UTR 30.0%
GACTTATTTCAACTGTTATG+CGG - Chr5:73108344-73108363 MsG0580028008.01.T01:CDS 30.0%
GAGAGAAAAATATTGAGACA+AGG + Chr5:73108497-73108516 None:intergenic 30.0%
GTGAAGAAAACCAAAGTTAT+CGG + Chr5:73109991-73110010 None:intergenic 30.0%
TACATGAGTTTACTCTTCAA+TGG + Chr5:73111474-73111493 None:intergenic 30.0%
TAGACCATACAATCATTTGT+AGG + Chr5:73109657-73109676 None:intergenic 30.0%
TAGTCATTGAGTCCAAAAAA+AGG - Chr5:73110237-73110256 MsG0580028008.01.T01:intron 30.0%
TCATAAAAGAAAGGACAACT+TGG - Chr5:73109438-73109457 MsG0580028008.01.T01:intron 30.0%
TCTCTTTCAATGAGAACTTT+GGG + Chr5:73107092-73107111 None:intergenic 30.0%
TCTTCCGTATAGAGAAAATT+TGG - Chr5:73112195-73112214 MsG0580028008.01.T01:CDS 30.0%
TGTCTGACATCAATAAATGT+CGG - Chr5:73107845-73107864 MsG0580028008.01.T01:intron 30.0%
! AATAAAATGAAGAGTGTGTC+TGG + Chr5:73108445-73108464 None:intergenic 30.0%
! ATAAAATGAAGAGTGTGTCT+GGG + Chr5:73108444-73108463 None:intergenic 30.0%
! ATGCAATAGTGGGAAAAAAA+GGG - Chr5:73108117-73108136 MsG0580028008.01.T01:intron 30.0%
! CAGTCTAGAACTCAAATAAA+AGG - Chr5:73107937-73107956 MsG0580028008.01.T01:intron 30.0%
! CCAACCAAATTTTCTCTATA+CGG + Chr5:73112202-73112221 None:intergenic 30.0%
! GGAGGGATATATTACATTTT+AGG + Chr5:73110072-73110091 None:intergenic 30.0%
! GGAGTTTTACAAAGAAAACA+AGG + Chr5:73107460-73107479 None:intergenic 30.0%
! GGATTCTATCTTTGGTAATA+TGG - Chr5:73110697-73110716 MsG0580028008.01.T01:CDS 30.0%
! TGTCTCAATATTTTTCTCTC+TGG - Chr5:73108497-73108516 MsG0580028008.01.T01:intron 30.0%
! TGTGGTTTGATGATATATGA+TGG - Chr5:73107542-73107561 MsG0580028008.01.T01:CDS 30.0%
! TGTTTTCTTTGTAAAACTCC+TGG - Chr5:73107460-73107479 MsG0580028008.01.T01:CDS 30.0%
!! AACCATTAGTTGTACTGATT+TGG - Chr5:73109695-73109714 MsG0580028008.01.T01:intron 30.0%
!! CTCTTGTTGGTTTAAAACAT+TGG - Chr5:73111260-73111279 MsG0580028008.01.T01:intron 30.0%
!! GAACAAAGGTGATTTTGTTT+TGG - Chr5:73107688-73107707 MsG0580028008.01.T01:intron 30.0%
!! GCAGTTTTGATCCATAAAAA+AGG - Chr5:73110363-73110382 MsG0580028008.01.T01:intron 30.0%
!! GTTTTGATCCTAATAGGAAA+GGG - Chr5:73107228-73107247 MsG0580028008.01.T01:three_prime_UTR 30.0%
!!! ATGGCTATAGATCCTTTTTT+TGG + Chr5:73110252-73110271 None:intergenic 30.0%
!!! ATGTTGATTTTCAACTTACC+AGG + Chr5:73107481-73107500 None:intergenic 30.0%
!!! CTTTTATTTGAGTTCTAGAC+TGG + Chr5:73107939-73107958 None:intergenic 30.0%
!!! TTCTTTTGTTTTTTGGGGTT+GGG - Chr5:73111994-73112013 MsG0580028008.01.T01:intron 30.0%
AAAAACAAAAGAAGGGAGCT+TGG + Chr5:73111987-73112006 None:intergenic 35.0%
AAAGATTGAGAAACTGGAAG+TGG - Chr5:73107205-73107224 MsG0580028008.01.T01:three_prime_UTR 35.0%
AACACCTGGAAAATGCTTTA+TGG - Chr5:73109927-73109946 MsG0580028008.01.T01:intron 35.0%
AACAGGATGTTATTCTTCGT+AGG + Chr5:73109316-73109335 None:intergenic 35.0%
AACTCTCAGAAAAGTTTGCA+AGG - Chr5:73107268-73107287 MsG0580028008.01.T01:three_prime_UTR 35.0%
AAGAATAACATCCTGTTGTC+GGG - Chr5:73109319-73109338 MsG0580028008.01.T01:CDS 35.0%
AAGATTGAGAAACTGGAAGT+GGG - Chr5:73107206-73107225 MsG0580028008.01.T01:three_prime_UTR 35.0%
AATATTACATGCCATCCATC+AGG + Chr5:73109756-73109775 None:intergenic 35.0%
ACAGGATGTTATTCTTCGTA+GGG + Chr5:73109315-73109334 None:intergenic 35.0%
ACATGCATGCTGAAACAAAA+TGG - Chr5:73110514-73110533 MsG0580028008.01.T01:intron 35.0%
ACATTTACAGAATGACCTTG+AGG + Chr5:73109848-73109867 None:intergenic 35.0%
AGAGTATGTTATGCCATGTT+TGG - Chr5:73107630-73107649 MsG0580028008.01.T01:intron 35.0%
AGCCAACAAAATTTGATGGA+GGG + Chr5:73110089-73110108 None:intergenic 35.0%
AGCTAATGTAGATGCAATAG+TGG - Chr5:73108106-73108125 MsG0580028008.01.T01:intron 35.0%
AGGAATCAGTGGCTAAATAA+AGG + Chr5:73109403-73109422 None:intergenic 35.0%
ATTTGTTCTTGTAAGGACTG+GGG - Chr5:73107730-73107749 MsG0580028008.01.T01:intron 35.0%
CAAAATTCTTACTACGTCAC+AGG - Chr5:73110655-73110674 MsG0580028008.01.T01:CDS 35.0%
CAACCCCAAAAAACAAAAGA+AGG + Chr5:73111995-73112014 None:intergenic 35.0%
CAAGTCAATATCGCAAAAGA+TGG + Chr5:73108573-73108592 None:intergenic 35.0%
CAGAAAAACCTCTAAACCTT+TGG - Chr5:73108660-73108679 MsG0580028008.01.T01:CDS 35.0%
CATCAATAAATGTCGGATAC+TGG - Chr5:73107852-73107871 MsG0580028008.01.T01:intron 35.0%
CATGACTATGCACAATTTCT+CGG + Chr5:73110733-73110752 None:intergenic 35.0%
CCGTATAGAGAAAATTTGGT+TGG - Chr5:73112199-73112218 MsG0580028008.01.T01:CDS 35.0%
CGTATATGGGATTCTATCTT+TGG - Chr5:73110689-73110708 MsG0580028008.01.T01:CDS 35.0%
CTCCAAATCAGTACAACTAA+TGG + Chr5:73109700-73109719 None:intergenic 35.0%
CTCTTTCAATGAGAACTTTG+GGG + Chr5:73107091-73107110 None:intergenic 35.0%
CTGGAAAATGCTTTATGGTA+TGG - Chr5:73109932-73109951 MsG0580028008.01.T01:intron 35.0%
GAAAGCAAAATTGTGGTTTG+TGG - Chr5:73111748-73111767 MsG0580028008.01.T01:intron 35.0%
GAACAATTACATGAAGGTTG+TGG + Chr5:73109557-73109576 None:intergenic 35.0%
GAAGAATAACATCCTGTTGT+CGG - Chr5:73109318-73109337 MsG0580028008.01.T01:CDS 35.0%
GACACAATGTTATCAAACAC+CGG - Chr5:73107986-73108005 MsG0580028008.01.T01:intron 35.0%
GAGTATGTTATGCCATGTTT+GGG - Chr5:73107631-73107650 MsG0580028008.01.T01:intron 35.0%
GATATGTCTGGTATGCTAAT+TGG + Chr5:73110288-73110307 None:intergenic 35.0%
GATCATTTCCACAAGTCAAA+AGG + Chr5:73110434-73110453 None:intergenic 35.0%
GCATATTTCTCTCCAATAAC+TGG - Chr5:73110629-73110648 MsG0580028008.01.T01:CDS 35.0%
GCTAATGTAGATGCAATAGT+GGG - Chr5:73108107-73108126 MsG0580028008.01.T01:intron 35.0%
GGAAATGAATCCATCATCAT+CGG + Chr5:73111824-73111843 None:intergenic 35.0%
GGACTTTGCCTTTAATAGTA+TGG - Chr5:73111611-73111630 MsG0580028008.01.T01:intron 35.0%
GGGAAAAAAAGGGAATCTTA+GGG - Chr5:73108127-73108146 MsG0580028008.01.T01:intron 35.0%
GTCTCTTTCAATGAGAACTT+TGG + Chr5:73107093-73107112 None:intergenic 35.0%
TAGCCAACAAAATTTGATGG+AGG + Chr5:73110090-73110109 None:intergenic 35.0%
TAGGTGACTTCTCTTTGTAT+AGG - Chr5:73112092-73112111 MsG0580028008.01.T01:CDS 35.0%
TGGGAAAAAAAGGGAATCTT+AGG - Chr5:73108126-73108145 MsG0580028008.01.T01:intron 35.0%
TGTATCATTCACTTTGTTCC+AGG - Chr5:73109145-73109164 MsG0580028008.01.T01:intron 35.0%
TTGCATATTACGGTGAATCT+AGG + Chr5:73108238-73108257 None:intergenic 35.0%
! AAGGTTTAGAGGTTTTTCTG+CGG + Chr5:73108660-73108679 None:intergenic 35.0%
! AAGTTTGCAAGGTTTGTTCA+TGG - Chr5:73107279-73107298 MsG0580028008.01.T01:three_prime_UTR 35.0%
! AGAGTTTTTGCTCGAACTTA+GGG - Chr5:73109012-73109031 MsG0580028008.01.T01:intron 35.0%
! ATCCCTCCATCAAATTTTGT+TGG - Chr5:73110084-73110103 MsG0580028008.01.T01:intron 35.0%
! ATTGTGAATCTAGGATAGTG+TGG + Chr5:73108054-73108073 None:intergenic 35.0%
! GAATACAAAAGCGTGAAGAT+AGG + Chr5:73112146-73112165 None:intergenic 35.0%
! GATGCAATAGTGGGAAAAAA+AGG - Chr5:73108116-73108135 MsG0580028008.01.T01:intron 35.0%
! GATTTGTTCTTGTAAGGACT+GGG - Chr5:73107729-73107748 MsG0580028008.01.T01:intron 35.0%
! GCGATTTTTCTTATGAGTGT+TGG - Chr5:73107352-73107371 MsG0580028008.01.T01:three_prime_UTR 35.0%
! GGTGTTTGATAACATTGTGT+CGG + Chr5:73107987-73108006 None:intergenic 35.0%
! TAACCTTCTGTGTCATTACA+GGG - Chr5:73110308-73110327 MsG0580028008.01.T01:intron 35.0%
! TTTAGGACTATATGGACATG+CGG + Chr5:73110055-73110074 None:intergenic 35.0%
! TTTCTGAGAGTTAGCGTAAT+GGG + Chr5:73107260-73107279 None:intergenic 35.0%
!! AAGTGGGTTTTGATCCTAAT+AGG - Chr5:73107222-73107241 MsG0580028008.01.T01:three_prime_UTR 35.0%
!! ACTCTATCTGCTATTTCACA+TGG - Chr5:73108386-73108405 MsG0580028008.01.T01:CDS 35.0%
!! CATACCATAAAGCATTTTCC+AGG + Chr5:73109934-73109953 None:intergenic 35.0%
!! GGTTTTGATCCTAATAGGAA+AGG - Chr5:73107227-73107246 MsG0580028008.01.T01:three_prime_UTR 35.0%
!! TAAAGCATTTTCCAGGTGTT+TGG + Chr5:73109927-73109946 None:intergenic 35.0%
!! TGATTTGTTCTTGTAAGGAC+TGG - Chr5:73107728-73107747 MsG0580028008.01.T01:intron 35.0%
!! TTTTCTGAGAGTTAGCGTAA+TGG + Chr5:73107261-73107280 None:intergenic 35.0%
!!! AGCTCCCTTCTTTTGTTTTT+TGG - Chr5:73111987-73112006 MsG0580028008.01.T01:intron 35.0%
!!! CTCCCTTCTTTTGTTTTTTG+GGG - Chr5:73111989-73112008 MsG0580028008.01.T01:intron 35.0%
!!! CTTCTTTTGTTTTTTGGGGT+TGG - Chr5:73111993-73112012 MsG0580028008.01.T01:intron 35.0%
!!! CTTTTGCGATATTGACTTGA+AGG - Chr5:73108574-73108593 MsG0580028008.01.T01:CDS 35.0%
!!! GCTCCCTTCTTTTGTTTTTT+GGG - Chr5:73111988-73112007 MsG0580028008.01.T01:intron 35.0%
!!! GGTTTTTTCCCTTTCCTATT+AGG + Chr5:73107239-73107258 None:intergenic 35.0%
!!! GTATGAGTGTTAGTTTTGTC+CGG + Chr5:73107790-73107809 None:intergenic 35.0%
!!! TCTTTTGTTTTTTGGGGTTG+GGG - Chr5:73111995-73112014 MsG0580028008.01.T01:intron 35.0%
!!! TTTCAGTTTTTTGTGCGTGA+AGG - Chr5:73111926-73111945 MsG0580028008.01.T01:intron 35.0%
!!! TTTTCAGGTCTCTGTTCATT+TGG - Chr5:73111686-73111705 MsG0580028008.01.T01:intron 35.0%
AAAAGGATGTCTGGTTGCAT+TGG + Chr5:73110417-73110436 None:intergenic 40.0%
AAAGAGGTTCTACGAGTAAC+CGG + Chr5:73107068-73107087 None:intergenic 40.0%
AACACCCTTCAAAGCTGAAT+GGG - Chr5:73110769-73110788 MsG0580028008.01.T01:intron 40.0%
AAGAAACGTGGTAAGAGGAA+AGG - Chr5:73111781-73111800 MsG0580028008.01.T01:intron 40.0%
ACAACAGCAAGTGACTCTAA+TGG + Chr5:73110899-73110918 None:intergenic 40.0%
ACAACTAATGGTTCCATCTG+AGG + Chr5:73109688-73109707 None:intergenic 40.0%
AGCAGAAAAAGAGGAATCAG+TGG + Chr5:73109414-73109433 None:intergenic 40.0%
AGGACAATCGTCTTCGTATA+TGG - Chr5:73110675-73110694 MsG0580028008.01.T01:CDS 40.0%
ATCGATGAATCCGATGATGA+TGG - Chr5:73111811-73111830 MsG0580028008.01.T01:CDS 40.0%
ATGTTATGCCATGTTTGGGA+AGG - Chr5:73107635-73107654 MsG0580028008.01.T01:intron 40.0%
ATTGAACCTACACAAAGTGG+TGG - Chr5:73111298-73111317 MsG0580028008.01.T01:intron 40.0%
CAAAATCCAAGCAGACTGAA+TGG - Chr5:73111857-73111876 MsG0580028008.01.T01:CDS 40.0%
CAATTTCCATTCAGTCTGCT+TGG + Chr5:73111866-73111885 None:intergenic 40.0%
CACAGAAGGTTAGATATGTC+TGG + Chr5:73110300-73110319 None:intergenic 40.0%
CACATACTCCAAAGGTTTAG+AGG + Chr5:73108671-73108690 None:intergenic 40.0%
CACTTTGAATTGTCCACATC+GGG - Chr5:73108603-73108622 MsG0580028008.01.T01:CDS 40.0%
CCAAACTGCTAACCATGTAT+AGG - Chr5:73111958-73111977 MsG0580028008.01.T01:intron 40.0%
CCACTTTGAATTGTCCACAT+CGG - Chr5:73108602-73108621 MsG0580028008.01.T01:CDS 40.0%
CCTATACATGGTTAGCAGTT+TGG + Chr5:73111961-73111980 None:intergenic 40.0%
CGTTCAAACACATACTCCAA+AGG + Chr5:73108679-73108698 None:intergenic 40.0%
GAAGGACGAAAGCAAAATTG+TGG - Chr5:73111741-73111760 MsG0580028008.01.T01:intron 40.0%
GCCAAAGGAAAAATCTGAGA+CGG - Chr5:73111711-73111730 MsG0580028008.01.T01:intron 40.0%
GGACAATCGTCTTCGTATAT+GGG - Chr5:73110676-73110695 MsG0580028008.01.T01:CDS 40.0%
TAACACCCTTCAAAGCTGAA+TGG - Chr5:73110768-73110787 MsG0580028008.01.T01:intron 40.0%
TAGTAGACGGATAACAAGCT+TGG - Chr5:73109282-73109301 MsG0580028008.01.T01:intron 40.0%
TATATTGTAGGCGCGCATTT+GGG - Chr5:73110541-73110560 MsG0580028008.01.T01:intron 40.0%
TCTAGTACTCACTCTCTTGT+TGG - Chr5:73111247-73111266 MsG0580028008.01.T01:intron 40.0%
TCTGTTCATTTGGAAGCCAA+AGG - Chr5:73111696-73111715 MsG0580028008.01.T01:intron 40.0%
TGAGAAGGTTTACGAGAAAG+TGG - Chr5:73109473-73109492 MsG0580028008.01.T01:intron 40.0%
TGCATCACCATTCCTATGAT+TGG + Chr5:73110346-73110365 None:intergenic 40.0%
TGTTCCAGGCTATTGATCAT+AGG - Chr5:73109159-73109178 MsG0580028008.01.T01:intron 40.0%
TTATAGGTGTGTAAGAAGCC+TGG - Chr5:73107385-73107404 MsG0580028008.01.T01:exon 40.0%
TTGAACCTACACAAAGTGGT+GGG - Chr5:73111299-73111318 MsG0580028008.01.T01:intron 40.0%
! AATGAGAACTTTGGGGAAAG+AGG + Chr5:73107084-73107103 None:intergenic 40.0%
! ACCGTCTCAGATTTTTCCTT+TGG + Chr5:73111715-73111734 None:intergenic 40.0%
! AGGTTTAGAGGTTTTTCTGC+GGG + Chr5:73108659-73108678 None:intergenic 40.0%
! ATGCATGCGACTTCTCTTTT+GGG - Chr5:73112035-73112054 MsG0580028008.01.T01:CDS 40.0%
! CAAGGTTTGTTCATGGTCAT+TGG - Chr5:73107286-73107305 MsG0580028008.01.T01:three_prime_UTR 40.0%
! CATTCAGTCTGCTTGGATTT+TGG + Chr5:73111859-73111878 None:intergenic 40.0%
! CTAACCTTCTGTGTCATTAC+AGG - Chr5:73110307-73110326 MsG0580028008.01.T01:intron 40.0%
! GAGAGTTTTTGCTCGAACTT+AGG - Chr5:73109011-73109030 MsG0580028008.01.T01:intron 40.0%
! GTCGACTCACAGATTGAAAT+CGG + Chr5:73107881-73107900 None:intergenic 40.0%
! GTTGAAAAGTGAGTGTTGCT+AGG - Chr5:73111368-73111387 MsG0580028008.01.T01:intron 40.0%
! TATGCATGCGACTTCTCTTT+TGG - Chr5:73112034-73112053 MsG0580028008.01.T01:CDS 40.0%
! TGGTCTGGAATCACACATTT+GGG + Chr5:73109235-73109254 None:intergenic 40.0%
! TTGGTCTGGAATCACACATT+TGG + Chr5:73109236-73109255 None:intergenic 40.0%
!! AGTTGTACTGATTTGGAGAC+TGG - Chr5:73109702-73109721 MsG0580028008.01.T01:intron 40.0%
!! CAGCTTTGAAGGGTGTTAAA+TGG + Chr5:73110766-73110785 None:intergenic 40.0%
!! TTAGAGTCACTTGCTGTTGT+TGG - Chr5:73110899-73110918 MsG0580028008.01.T01:intron 40.0%
AAGCTTATTCACCGGACTGA+TGG + Chr5:73111032-73111051 None:intergenic 45.0%
AATGGTTCCATCTGAGGATG+CGG + Chr5:73109682-73109701 None:intergenic 45.0%
ACGTCTACATCCGTGTTTAC+AGG + Chr5:73107762-73107781 None:intergenic 45.0%
ACTATGCACAATTTCTCGGC+TGG + Chr5:73110729-73110748 None:intergenic 45.0%
ACTTAGGCTTACCGTAGGAA+TGG + Chr5:73108716-73108735 None:intergenic 45.0%
AGAAAGGACAACTTGGAGTC+TGG - Chr5:73109445-73109464 MsG0580028008.01.T01:intron 45.0%
AGATACAAGTACAGGGCAGT+TGG - Chr5:73110976-73110995 MsG0580028008.01.T01:intron 45.0%
ATGCGGTCCAATCATAGGAA+TGG - Chr5:73110336-73110355 MsG0580028008.01.T01:intron 45.0%
CAAAGCTGAATGGGATCCAA+AGG - Chr5:73110778-73110797 MsG0580028008.01.T01:intron 45.0%
CCACAAGTCAAAAGGATGTC+TGG + Chr5:73110426-73110445 None:intergenic 45.0%
CCATGTTTGGGAAGGAATTG+AGG - Chr5:73107643-73107662 MsG0580028008.01.T01:intron 45.0%
CCGATGTGGACAATTCAAAG+TGG + Chr5:73108605-73108624 None:intergenic 45.0%
CCTCAATTCCTTCCCAAACA+TGG + Chr5:73107646-73107665 None:intergenic 45.0%
CTATATTGTAGGCGCGCATT+TGG - Chr5:73110540-73110559 MsG0580028008.01.T01:intron 45.0%
CTATGCACAATTTCTCGGCT+GGG + Chr5:73110728-73110747 None:intergenic 45.0%
CTGAGAAGAAACGTGGTAAG+AGG - Chr5:73111776-73111795 MsG0580028008.01.T01:intron 45.0%
CTGGTTGCATTGGATTGCAA+TGG + Chr5:73110407-73110426 None:intergenic 45.0%
GAAAGGACAACTTGGAGTCT+GGG - Chr5:73109446-73109465 MsG0580028008.01.T01:intron 45.0%
GAACATCACAACCATCAGTC+CGG - Chr5:73111018-73111037 MsG0580028008.01.T01:intron 45.0%
GAATGACTTAGGCTTACCGT+AGG + Chr5:73108721-73108740 None:intergenic 45.0%
GACATGCGGAGACAGTAAAA+CGG + Chr5:73110041-73110060 None:intergenic 45.0%
GACTGATGGTTGTGATGTTC+GGG + Chr5:73111018-73111037 None:intergenic 45.0%
GATATGCGTCACTTAGAAGC+TGG - Chr5:73110563-73110582 MsG0580028008.01.T01:intron 45.0%
GCTAAGACATGCCATTCCTA+CGG - Chr5:73108702-73108721 MsG0580028008.01.T01:CDS 45.0%
GGAAAAGCTGAGAAGAAACG+TGG - Chr5:73111769-73111788 MsG0580028008.01.T01:intron 45.0%
GGACTGATGGTTGTGATGTT+CGG + Chr5:73111019-73111038 None:intergenic 45.0%
GGATGTTATTCTTCGTAGGG+TGG + Chr5:73109312-73109331 None:intergenic 45.0%
GGGGAAAAAGCCTGTAAACA+CGG - Chr5:73107749-73107768 MsG0580028008.01.T01:intron 45.0%
GTCTCCTATGATCAATAGCC+TGG + Chr5:73109166-73109185 None:intergenic 45.0%
GTGATGATATCCTGGCAACT+GGG - Chr5:73111059-73111078 MsG0580028008.01.T01:intron 45.0%
TAACAACACGCTTGTGCTCA+AGG + Chr5:73110604-73110623 None:intergenic 45.0%
TAACCTTATCTCCCGACAAC+AGG + Chr5:73109333-73109352 None:intergenic 45.0%
TAAGAAGCCTGGTCATGAAG+CGG - Chr5:73107396-73107415 MsG0580028008.01.T01:exon 45.0%
TAGGAATGGCATGTCTTAGC+TGG + Chr5:73108702-73108721 None:intergenic 45.0%
TATGTCCCACCACTTTGTGT+AGG + Chr5:73111307-73111326 None:intergenic 45.0%
TGAACCTGAATCCTGATGGA+TGG - Chr5:73109742-73109761 MsG0580028008.01.T01:intron 45.0%
TGATAACAGCGCAACTCACT+TGG + Chr5:73109255-73109274 None:intergenic 45.0%
TGTAAACACGGATGTAGACG+TGG - Chr5:73107761-73107780 MsG0580028008.01.T01:intron 45.0%
TTAAAACCCGCTTCATGACC+AGG + Chr5:73107406-73107425 None:intergenic 45.0%
! CCATCAGGATTCAGGTTCAT+CGG + Chr5:73109741-73109760 None:intergenic 45.0%
! GGAGCTTGGTAACCTATACA+TGG + Chr5:73111973-73111992 None:intergenic 45.0%
! GGTTTAGAGGTTTTTCTGCG+GGG + Chr5:73108658-73108677 None:intergenic 45.0%
! GTGAATCTAGGATAGTGTGG+CGG + Chr5:73108051-73108070 None:intergenic 45.0%
! TGCATGCGACTTCTCTTTTG+GGG - Chr5:73112036-73112055 MsG0580028008.01.T01:CDS 45.0%
! TGGATCCCATTCAGCTTTGA+AGG + Chr5:73110777-73110796 None:intergenic 45.0%
!! AGAAGAAGAAGAAGCACTCG+AGG - Chr5:73107142-73107161 MsG0580028008.01.T01:three_prime_UTR 45.0%
!! GGATCCCATTCAGCTTTGAA+GGG + Chr5:73110776-73110795 None:intergenic 45.0%
!! GGTCATGAAGCGGGTTTTAA+GGG - Chr5:73107406-73107425 MsG0580028008.01.T01:CDS 45.0%
!! TACTGAGCATGGTGTTGTTC+CGG - Chr5:73108630-73108649 MsG0580028008.01.T01:CDS 45.0%
!! TGGAGTCTGGGATTTTGAGA+AGG - Chr5:73109458-73109477 MsG0580028008.01.T01:intron 45.0%
!! TGGTCATGAAGCGGGTTTTA+AGG - Chr5:73107405-73107424 MsG0580028008.01.T01:CDS 45.0%
!!! CCAGACATCCTTTTGACTTG+TGG - Chr5:73110423-73110442 MsG0580028008.01.T01:intron 45.0%
!!! GGATTTTGGCTTCTTGAGCT+TGG + Chr5:73111845-73111864 None:intergenic 45.0%
AAGAAGCCTGGTCATGAAGC+GGG - Chr5:73107397-73107416 MsG0580028008.01.T01:exon 50.0%
ATTGTCTCGCTGCTCGACAA+AGG - Chr5:73111882-73111901 MsG0580028008.01.T01:CDS 50.0%
CAATCTGTGAGTCGACTGTG+TGG - Chr5:73107885-73107904 MsG0580028008.01.T01:intron 50.0%
CATCCTGTTGTCGGGAGATA+AGG - Chr5:73109327-73109346 MsG0580028008.01.T01:CDS 50.0%
CATGCCATCCATCAGGATTC+AGG + Chr5:73109749-73109768 None:intergenic 50.0%
CCGATGAACCTGAATCCTGA+TGG - Chr5:73109738-73109757 MsG0580028008.01.T01:intron 50.0%
CGACCCTGTAATGACACAGA+AGG + Chr5:73110314-73110333 None:intergenic 50.0%
CGTGATGATATCCTGGCAAC+TGG - Chr5:73111058-73111077 MsG0580028008.01.T01:intron 50.0%
CTTGTGCTCAAGGCTACAGA+GGG + Chr5:73110594-73110613 None:intergenic 50.0%
GTCATTACAGGGTCGACATG+CGG - Chr5:73110319-73110338 MsG0580028008.01.T01:intron 50.0%
GTCTATTCCGCATCCTCAGA+TGG - Chr5:73109672-73109691 MsG0580028008.01.T01:intron 50.0%
TCGACATGCGGTCCAATCAT+AGG - Chr5:73110331-73110350 MsG0580028008.01.T01:intron 50.0%
TTTACTAGGGGCCAAACACC+TGG - Chr5:73109913-73109932 MsG0580028008.01.T01:intron 50.0%
! AGGATTCAGGTTCATCGGAG+AGG + Chr5:73109736-73109755 None:intergenic 50.0%
! GGAAAAATCTGAGACGGTCG+AGG - Chr5:73111717-73111736 MsG0580028008.01.T01:intron 50.0%
! TGAGAAAGGTCTTGTGCTCG+TGG - Chr5:73109965-73109984 MsG0580028008.01.T01:intron 50.0%
!! AGAAGAAGAAGCACTCGAGG+AGG - Chr5:73107145-73107164 MsG0580028008.01.T01:three_prime_UTR 50.0%
!! GCAGTTGGTAGCAGAAGTCA+TGG - Chr5:73110991-73111010 MsG0580028008.01.T01:intron 50.0%
ACAGCGCAACTCACTTGGTC+TGG + Chr5:73109250-73109269 None:intergenic 55.0%
ACCTAGAACTCCCAGTTGCC+AGG + Chr5:73111072-73111091 None:intergenic 55.0%
ACGGATGTAGACGTGGACAC+CGG - Chr5:73107768-73107787 MsG0580028008.01.T01:intron 55.0%
CATCGGGTCACTACTGAGCA+TGG - Chr5:73108619-73108638 MsG0580028008.01.T01:CDS 55.0%
GCTTGTGCTCAAGGCTACAG+AGG + Chr5:73110595-73110614 None:intergenic 55.0%
GTGCTCGTGGCCGATAACTT+TGG - Chr5:73109978-73109997 MsG0580028008.01.T01:CDS 55.0%
TCCTGGCAACTGGGAGTTCT+AGG - Chr5:73111068-73111087 MsG0580028008.01.T01:intron 55.0%
TGCTCAGTAGTGACCCGATG+TGG + Chr5:73108619-73108638 None:intergenic 55.0%
! ATCTGAGACGGTCGAGGAGA+AGG - Chr5:73111723-73111742 MsG0580028008.01.T01:intron 55.0%
TGACCTTGAGGAGACTCGCG+CGG + Chr5:73109836-73109855 None:intergenic 60.0%
! GAGGTTTTTCTGCGGGGTGC+CGG + Chr5:73108652-73108671 None:intergenic 60.0%
TGACCGCGCGAGTCTCCTCA+AGG - Chr5:73109830-73109849 MsG0580028008.01.T01:CDS 65.0%
Chromosome Type Strat End Strand Name
Chr5 gene 73107059 73112258 73107059 ID=MsG0580028008.01;Name=MsG0580028008.01
Chr5 mRNA 73107059 73112258 73107059 ID=MsG0580028008.01.T01;Parent=MsG0580028008.01;Name=MsG0580028008.01.T01;_AED=0.36;_eAED=0.36;_QI=0|0.9|0.90|1|0.8|0.90|11|343|570
Chr5 exon 73107059 73107624 73107059 ID=MsG0580028008.01.T01:exon:45229;Parent=MsG0580028008.01.T01
Chr5 exon 73108228 73108424 73108228 ID=MsG0580028008.01.T01:exon:45228;Parent=MsG0580028008.01.T01
Chr5 exon 73108518 73108766 73108518 ID=MsG0580028008.01.T01:exon:45227;Parent=MsG0580028008.01.T01
Chr5 exon 73108859 73108988 73108859 ID=MsG0580028008.01.T01:exon:45226;Parent=MsG0580028008.01.T01
Chr5 exon 73109305 73109396 73109305 ID=MsG0580028008.01.T01:exon:45225;Parent=MsG0580028008.01.T01
Chr5 exon 73109550 73109670 73109550 ID=MsG0580028008.01.T01:exon:45224;Parent=MsG0580028008.01.T01
Chr5 exon 73109782 73109870 73109782 ID=MsG0580028008.01.T01:exon:45223;Parent=MsG0580028008.01.T01
Chr5 exon 73109969 73110091 73109969 ID=MsG0580028008.01.T01:exon:45222;Parent=MsG0580028008.01.T01
Chr5 exon 73110594 73110721 73110594 ID=MsG0580028008.01.T01:exon:45221;Parent=MsG0580028008.01.T01
Chr5 exon 73111797 73111926 73111797 ID=MsG0580028008.01.T01:exon:45220;Parent=MsG0580028008.01.T01
Chr5 exon 73112028 73112258 73112028 ID=MsG0580028008.01.T01:exon:45219;Parent=MsG0580028008.01.T01
Chr5 CDS 73112028 73112258 73112028 ID=MsG0580028008.01.T01:cds;Parent=MsG0580028008.01.T01
Chr5 CDS 73111797 73111926 73111797 ID=MsG0580028008.01.T01:cds;Parent=MsG0580028008.01.T01
Chr5 CDS 73110594 73110721 73110594 ID=MsG0580028008.01.T01:cds;Parent=MsG0580028008.01.T01
Chr5 CDS 73109969 73110091 73109969 ID=MsG0580028008.01.T01:cds;Parent=MsG0580028008.01.T01
Chr5 CDS 73109782 73109870 73109782 ID=MsG0580028008.01.T01:cds;Parent=MsG0580028008.01.T01
Chr5 CDS 73109550 73109670 73109550 ID=MsG0580028008.01.T01:cds;Parent=MsG0580028008.01.T01
Chr5 CDS 73109305 73109396 73109305 ID=MsG0580028008.01.T01:cds;Parent=MsG0580028008.01.T01
Chr5 CDS 73108859 73108988 73108859 ID=MsG0580028008.01.T01:cds;Parent=MsG0580028008.01.T01
Chr5 CDS 73108518 73108766 73108518 ID=MsG0580028008.01.T01:cds;Parent=MsG0580028008.01.T01
Chr5 CDS 73108228 73108424 73108228 ID=MsG0580028008.01.T01:cds;Parent=MsG0580028008.01.T01
Chr5 CDS 73107402 73107624 73107402 ID=MsG0580028008.01.T01:cds;Parent=MsG0580028008.01.T01
Chr5 three_prime_UTR 73107059 73107401 73107059 ID=MsG0580028008.01.T01:three_prime_utr;Parent=MsG0580028008.01.T01
Gene Sequence

>MsG0580028008.01.T01

ATGGCACCGGTTACTCGTAGAACCTCTTTCCCCAAAGTTCTCATTGAAAGAGACTCTGACTCTGAACAGAGTTCTTCTGATGAAGAAGAAGAAGAAGCACTCGAGGAGGAAGAAGAAGAAGAAGAAAATGGGGTTGCTGAAAATGAAAAGATTGAGAAACTGGAAGTGGGTTTTGATCCTAATAGGAAAGGGAAAAAACCCATTACGCTAACTCTCAGAAAAGTTTGCAAGGTGTGTAAGAAGCCTGGTCATGAAGCGGGTTTTAAGGGTGCTACTTACATTGATTGCCCTATGAAACCTTGTTTTCTTTGTAAAACTCCTGGTAAGTTGAAAATCAACATTCCTCGTATTGTTTGTATTGGACATACCACTTTGAATTGTCCACATCGGGTCACTACTGAGCATGGTGTTGTTCCGGCACCCCGCAGAAAAACCTCTAAACCTTTGGAGTATGTGTTTGAACGCCAGCTAAGACATGCCATTCCTACGATCAAGCCCAAATGTGTGATTCCAGACCAAGTGAGTTGCGCTGTTATCAGATATCATAGTAGACGGATAACAAGCTTGGAGTTCCACCCTACGAAGAATAACATCCTGTTGTCGGGAGATAAGAAAGGACAACTTGGAGTCTGGGATTTTGAGAAGGTTTACGAGAAAGTGGTCTATGAGAACATACACTCTTGTATACTGAACAACATGAAGTTTAATCCTACAAATGATTGTATGGTCTATTCCGCATCCTCAGATGGAACCATTAGTTGTACTGATTTGGAGACTGGAATATCATCCTCTCCGATGAACCTGAATCCTGATGGATGGCATGGGCCAAACACCTGGAAAATGCTTTATGGTATGGATATTCACTATGAGAAAGGTCTTGTGCTCGTGGCCGATAACTTTGGTTTTCTTCACTTGGTCGACATGCGGTCCAATCATAGGAATGGTGATGCAGTTTTGATCCATAAAAAAGGTAGCAAAGTTACTGGTATCCATTGCAATCCAATGCAACCAGACATCCTTTTGACTTGTGGAAATGATCATTATGCGCGCATTTGGGATATGCGTCACTTAGAAGCTGGATCATCCCTCTGTAGCCTTGAGCACAAGCGTGTTGTTAACTCTGCATATTTCTCTCCAATAACTGGAAACAAAATTCTTACTACGTCACAGGACAATCGTCTTCGTATATGGGATTCTATCTTTGGTAATATGGCATCTCCCAGCCGAGAAATTGTGCATAGTCATGATTTCAATCGCCATTTAACACCCTTCAAAGCTGAATGGGATCCAAAGGATCCATTAGAGTCACTTGCTGTTGTTGGCCGTTATATAAGTGAAAATTTTAATGGCACAGCCCTGCATCCTATTGATTTTATAGATACAAGTACAGGGCAGTTGGTAGCAGAAGTCATGGACCCGAACATCACAACCATCAGTCCGGTGAATAAGCTTCATCCACGTGATGATATCCTGGCAACTGGGAGTTCTAGGTCTCTGTTCATTTGGAAGCCAAAGGAAAAATCTGAGACGGTCGAGGAGAAGGACGAAAGCAAAATTGTGGTTTGTGGAAAAGCTGAGAAGAAACGTGGTAAGAGGAAAGGTGATAACATCGATGAATCCGATGATGATGGATTCATTTCCAAGCTCAAGAAGCCAAAATCCAAGCAGACTGAATGGAAATTGTCTCGCTGCTCGACAAAGGATAATCGCTAA
Protein sequence

>MsG0580028008.01.T01

MAPVTRRTSFPKVLIERDSDSEQSSSDEEEEEALEEEEEEEENGVAENEKIEKLEVGFDPNRKGKKPITLTLRKVCKVCKKPGHEAGFKGATYIDCPMKPCFLCKTPGKLKINIPRIVCIGHTTLNCPHRVTTEHGVVPAPRRKTSKPLEYVFERQLRHAIPTIKPKCVIPDQVSCAVIRYHSRRITSLEFHPTKNNILLSGDKKGQLGVWDFEKVYEKVVYENIHSCILNNMKFNPTNDCMVYSASSDGTISCTDLETGISSSPMNLNPDGWHGPNTWKMLYGMDIHYEKGLVLVADNFGFLHLVDMRSNHRNGDAVLIHKKGSKVTGIHCNPMQPDILLTCGNDHYARIWDMRHLEAGSSLCSLEHKRVVNSAYFSPITGNKILTTSQDNRLRIWDSIFGNMASPSREIVHSHDFNRHLTPFKAEWDPKDPLESLAVVGRYISENFNGTALHPIDFIDTSTGQLVAEVMDPNITTISPVNKLHPRDDILATGSSRSLFIWKPKEKSETVEEKDESKIVVCGKAEKKRGKRKGDNIDESDDDGFISKLKKPKSKQTEWKLSRCSTKDNR*