AlfalfaGEDB | MsG0580028566.01

M. sativa cultivar ZhongmuNo.1 / MsG0580028566.01

KEGG: -
GO: GO:0008168 GO:0008171 GO:0046983
PFAM: PF00891 PF08100

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0580028566.01.T01	XP_003615967.1	96.657	359	9	1	1	356	1	359	0	715

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0580028566.01.T01	B0ZB57	58.659	358	140	2	7	356	20	377	6.58E-156	445

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0580028566.01.T01	G7KFJ4	96.657	359	9	1	1	356	1	359	0.0	715

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0180001358.01	MsG0580028566.01	0.803538	3.323178e-49	1.674365e-46
MsG0380017997.01	MsG0580028566.01	0.801670	8.070626e-49	3.876844e-46
MsG0480019545.01	MsG0580028566.01	0.810094	1.367210e-50	8.167392e-48

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0580028566.01.T01	MTR_5g074600	96.657	359	9	1	1	356	1	359	0.0	715
MsG0580028566.01.T01	MTR_5g074680	84.123	359	53	2	1	355	1	359	0.0	622
MsG0580028566.01.T01	MTR_5g074580	80.833	360	65	2	1	356	1	360	0.0	594
MsG0580028566.01.T01	MTR_5g074540	74.930	359	69	2	1	356	1	341	0.0	543
MsG0580028566.01.T01	MTR_5g074610	69.359	359	74	4	1	356	1	326	1.15e-179	501
MsG0580028566.01.T01	MTR_4g079160	61.111	360	131	5	1	356	1	355	6.38e-159	449
MsG0580028566.01.T01	MTR_4g033200	49.863	365	172	6	1	356	1	363	1.18e-115	340
MsG0580028566.01.T01	MTR_4g033015	49.589	365	173	6	1	356	1	363	2.54e-114	337
MsG0580028566.01.T01	MTR_7g014570	47.564	349	173	6	11	356	11	352	7.07e-113	332
MsG0580028566.01.T01	MTR_4g088200	47.592	353	176	6	11	356	11	361	1.59e-112	332

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0580028566.01.T01	AT4G35160	36.512	367	213	9	5	355	18	380	2.15e-67	217
MsG0580028566.01.T01	AT4G35150	33.516	364	187	8	6	355	1	323	2.69e-59	194
MsG0580028566.01.T01	AT1G51990	34.251	327	199	8	43	356	39	362	1.80e-52	178
MsG0580028566.01.T01	AT1G51990	34.251	327	199	8	43	356	39	362	2.14e-52	177
MsG0580028566.01.T01	AT5G54160	33.750	320	198	8	31	342	34	347	3.33e-52	177
MsG0580028566.01.T01	AT3G53140	33.025	324	198	9	31	341	27	344	9.75e-45	157
MsG0580028566.01.T01	AT1G33030	31.638	354	212	12	1	342	1	336	9.32e-44	154
MsG0580028566.01.T01	AT1G77520	30.084	359	225	9	14	355	31	380	2.39e-43	154
MsG0580028566.01.T01	AT5G53810	30.904	343	218	8	29	355	38	377	1.58e-37	139
MsG0580028566.01.T01	AT1G63140	31.988	322	203	6	37	355	72	380	3.64e-37	138

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Find 71 sgRNAs with CRISPR-Local

Find 193 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAATAAATGTTGTTGATAAA+TGG	0.220916	5:-82497577	None:intergenic
AACAAAATTGCATCTGCCGG+CGG	0.579483	5:-82495462	None:intergenic
AACACAATGCACTCCATTTG+TGG	0.453290	5:-82495360	None:intergenic
AACACATTTGAGACGACACA+TGG	0.563279	5:+82495144	MsG0580028566.01.T01:CDS
AACTACACATTTAAGTGACA+TGG	0.582842	5:-82494803	None:intergenic
AAGAGAGAAACGAGAAGGAA+TGG	0.486925	5:+82497453	MsG0580028566.01.T01:CDS
AAGCAACCTGCTCTATATTT+TGG	0.103265	5:-82494723	None:intergenic
AAGGATGCAATATCAAAGAA+AGG	0.498497	5:+82497320	MsG0580028566.01.T01:CDS
AAGTAAGAGTTTAGATGCAT+CGG	0.512463	5:-82495016	None:intergenic
AATATCAAAGAAAGGGAAGG+TGG	0.637517	5:+82497328	MsG0580028566.01.T01:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAATATGGTTAAACTTGAGG+AGG	+	Chr5:82496704-82496723	MsG0580028566.01.T01:intron	30.0%
AACTACACATTTAAGTGACA+TGG	-	Chr5:82494806-82494825	None:intergenic	30.0%
AACTCTTAATGAAATTGCAG+TGG	+	Chr5:82497246-82497265	MsG0580028566.01.T01:intron	30.0%
AAGGATGCAATATCAAAGAA+AGG	+	Chr5:82497320-82497339	MsG0580028566.01.T01:CDS	30.0%
AAGTAAGAGTTTAGATGCAT+CGG	-	Chr5:82495019-82495038	None:intergenic	30.0%
AGGATGCAATATCAAAGAAA+GGG	+	Chr5:82497321-82497340	MsG0580028566.01.T01:CDS	30.0%
AGTTGATCAGAAATTCATAG+AGG	+	Chr5:82496145-82496164	MsG0580028566.01.T01:intron	30.0%
ATAGACCTTAAGCCTAAAAT+TGG	-	Chr5:82497524-82497543	None:intergenic	30.0%
ATCCTTCAACTTACATAAAC+TGG	+	Chr5:82496623-82496642	MsG0580028566.01.T01:intron	30.0%
ATTCAAGTAGCAAGTAAGTA+TGG	+	Chr5:82494696-82494715	MsG0580028566.01.T01:exon	30.0%

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Chromosome	Type	Strat	End	Strand	Name
Chr5	gene	82494685	82497592	82494685	ID=MsG0580028566.01;Name=MsG0580028566.01
Chr5	mRNA	82494685	82497592	82494685	ID=MsG0580028566.01.T01;Parent=MsG0580028566.01;Name=MsG0580028566.01.T01;_AED=0.27;_eAED=0.27;_QI=30\|1\|1\|1\|1\|1\|2\|30\|356
Chr5	exon	82494685	82495488	82494685	ID=MsG0580028566.01.T01:exon:21202;Parent=MsG0580028566.01.T01
Chr5	exon	82497266	82497592	82497266	ID=MsG0580028566.01.T01:exon:21203;Parent=MsG0580028566.01.T01
Chr5	five_prime_UTR	82494685	82494714	82494685	ID=MsG0580028566.01.T01:five_prime_utr;Parent=MsG0580028566.01.T01
Chr5	CDS	82494715	82495488	82494715	ID=MsG0580028566.01.T01:cds;Parent=MsG0580028566.01.T01
Chr5	CDS	82497266	82497562	82497266	ID=MsG0580028566.01.T01:cds;Parent=MsG0580028566.01.T01
Chr5	three_prime_UTR	82497563	82497592	82497563	ID=MsG0580028566.01.T01:three_prime_utr;Parent=MsG0580028566.01.T01

Gene Sequence

>MsG0580028566.01.T01

ATGGAATCCCAAAATATAGAGCAGGTTGCTTCCAATTTGCTCAAAGCTCAAAGCCATGTATGGAATCACATGTTTAACTTTATAAATTCCATGTCACTTAAATGTGTAGTTGACTTAGGCATACCAGATATCATACACAACTATGGCAAACCCATGCCACTCTCAAAACTTATTTCTTCATTATCAATCCACCCTTCAAAAAACCATGGCATCCATCGCTTGATGCGAATCATGACTCACTCTGGCTTCTTCTCTAAAAAAAAAGTTATAGGAAATGAGCTAGAAATTGAGTATGTGTTAACCGATGCATCTAAACTCTTACTTAAGGACAATCCAATGAGTGTGGCACCATACGTGCACGCAATGGTCAATCCAGTTATGATGAATCCATGGCATCAATTCTCTACTTGGTTAAAAAATGACGATACTAACACATTTGAGACGACACATGGGATGTCAACATGGGAGTATGCTGCACGTGACTCCGAAATTAACAACTTATTTAACGAGTCAATGGCAAATGATACTCGATTAGTATCCGACTTGCTGGTTGAGAAGTGCATGGGAGTGTTCAATGAAGTTGAGTCATTGGTTGATGTTGGAGGAGGAACAGGGACTATGGCAAAGACTCTTGCCAAATCATTCCCACAAATGGAGTGCATTGTGTTTGATCTCCCACACGTTGTTGATGGCTTGCAAGGAAGTGAGAAGCTAAGATATGTTGGTGGAGACATGTTTAAAGAAATTCCGCCGGCAGATGCAATTTTGTTGAAGTGGATATTGCATGACTGGAACGACGAGCAATGTCTGAAGATTTTAAAGAATTGTAAGGATGCAATATCAAAGAAAGGGAAGGTGGTTATCATAGACATGGTGTTGGATTGTGAGAAGGGAGGGAATAATGAATCAGTTGAAACACAACTCTTCTTTGATATGTTGATGATGGCCCTACTAACAGGAAAAGAGAGAAACGAGAAGGAATGGATGAAATTGATTTCTTTAGCTGGTTTTAGTGACTACAAGATCACTCCAATTTTAGGCTTAAGGTCTATGATTGAGATCTATCCATAA

Protein sequence

>MsG0580028566.01.T01

MESQNIEQVASNLLKAQSHVWNHMFNFINSMSLKCVVDLGIPDIIHNYGKPMPLSKLISSLSIHPSKNHGIHRLMRIMTHSGFFSKKKVIGNELEIEYVLTDASKLLLKDNPMSVAPYVHAMVNPVMMNPWHQFSTWLKNDDTNTFETTHGMSTWEYAARDSEINNLFNESMANDTRLVSDLLVEKCMGVFNEVESLVDVGGGTGTMAKTLAKSFPQMECIVFDLPHVVDGLQGSEKLRYVGGDMFKEIPPADAILLKWILHDWNDEQCLKILKNCKDAISKKGKVVIIDMVLDCEKGGNNESVETQLFFDMLMMALLTGKERNEKEWMKLISLAGFSDYKITPILGLRSMIEIYP*