Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180001358.01.T01 | XP_013466776.2 | 96.25 | 320 | 12 | 0 | 1 | 320 | 131 | 450 | 0 | 657 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180001358.01.T01 | Q9CA34 | 63.975 | 322 | 111 | 2 | 1 | 322 | 129 | 445 | 5.46E-156 | 447 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180001358.01.T01 | A0A396JPN5 | 96.250 | 320 | 12 | 0 | 1 | 320 | 131 | 450 | 0.0 | 657 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0180000076.01 | MsG0180001358.01 | 0.815651 | 8.288566e-52 | 5.748377e-49 |
| MsG0180001358.01 | MsG0180004121.01 | 0.801966 | 7.015557e-49 | 3.395354e-46 |
| MsG0180001358.01 | MsG0180004714.01 | -0.811247 | 7.701422e-51 | 4.743238e-48 |
| MsG0180001358.01 | MsG0180006182.01 | 0.835695 | 1.444533e-56 | 1.780261e-53 |
| MsG0180001358.01 | MsG0280006884.01 | 0.804037 | 2.617725e-49 | 1.335909e-46 |
| MsG0180001358.01 | MsG0280007281.01 | 0.803534 | 3.329528e-49 | 1.677390e-46 |
| MsG0180001358.01 | MsG0280007786.01 | 0.811785 | 5.883593e-51 | 3.675522e-48 |
| MsG0180001358.01 | MsG0280010240.01 | 0.814835 | 1.258638e-51 | 8.535927e-49 |
| MsG0180001358.01 | MsG0380013041.01 | 0.829705 | 4.432467e-55 | 4.572499e-52 |
| MsG0180001358.01 | MsG0380015518.01 | 0.840517 | 8.292450e-58 | 1.184126e-54 |
| MsG0180001358.01 | MsG0380015858.01 | 0.843100 | 1.724602e-58 | 2.669350e-55 |
| MsG0180001358.01 | MsG0380016110.01 | 0.845577 | 3.723163e-59 | 6.232354e-56 |
| MsG0180001358.01 | MsG0380016865.01 | 0.855211 | 7.346156e-62 | 1.683057e-58 |
| MsG0180001358.01 | MsG0380017997.01 | 0.830115 | 3.521138e-55 | 3.675360e-52 |
| MsG0180001358.01 | MsG0380018007.01 | 0.833213 | 6.068028e-56 | 6.941482e-53 |
| MsG0180001358.01 | MsG0480018185.01 | 0.848226 | 7.015476e-60 | 1.278547e-56 |
| MsG0180001358.01 | MsG0480018563.01 | 0.802855 | 4.601420e-49 | 2.278107e-46 |
| MsG0180001358.01 | MsG0480018990.01 | 0.816687 | 4.863820e-52 | 3.469850e-49 |
| MsG0180001358.01 | MsG0480019588.01 | 0.822477 | 2.319551e-53 | 1.943686e-50 |
| MsG0180001358.01 | MsG0480020622.01 | 0.817320 | 3.505972e-52 | 2.544913e-49 |
| MsG0180001358.01 | MsG0480023944.01 | 0.830864 | 2.309524e-55 | 2.464003e-52 |
| MsG0180001358.01 | MsG0480023987.01 | 0.815669 | 8.213933e-52 | 5.699181e-49 |
| MsG0180001358.01 | MsG0580024431.01 | 0.800000 | 1.769357e-48 | 8.147411e-46 |
| MsG0180001358.01 | MsG0580025153.01 | -0.803832 | 2.887793e-49 | 1.465992e-46 |
| MsG0180001358.01 | MsG0580025464.01 | 0.843924 | 1.038831e-58 | 1.650523e-55 |
| MsG0180001358.01 | MsG0580025486.01 | -0.802813 | 4.695862e-49 | 2.322478e-46 |
| MsG0180001358.01 | MsG0580027974.01 | 0.811710 | 6.109693e-51 | 3.809072e-48 |
| MsG0180001358.01 | MsG0580028566.01 | 0.803538 | 3.323178e-49 | 1.674365e-46 |
| MsG0180001358.01 | MsG0580029751.01 | -0.843151 | 1.671074e-58 | 2.590704e-55 |
| MsG0180001358.01 | MsG0580030179.01 | 0.801434 | 9.020006e-49 | 4.307215e-46 |
| MsG0180001358.01 | MsG0680030635.01 | -0.801705 | 7.935917e-49 | 3.815502e-46 |
| MsG0180001358.01 | MsG0780036759.01 | 0.804033 | 2.623105e-49 | 1.338510e-46 |
| MsG0180001358.01 | MsG0780036890.01 | 0.808406 | 3.145959e-50 | 1.797336e-47 |
| MsG0180001358.01 | MsG0780038810.01 | 0.819844 | 9.383458e-53 | 7.303191e-50 |
| MsG0180001358.01 | MsG0780039917.01 | 0.842451 | 2.565704e-58 | 3.892176e-55 |
| MsG0180001358.01 | MsG0780039924.01 | 0.819723 | 9.997391e-53 | 7.754907e-50 |
| MsG0180001358.01 | MsG0780040564.01 | 0.801966 | 7.015557e-49 | 3.395354e-46 |
| MsG0180001358.01 | MsG0780041180.01 | 0.817040 | 4.053533e-52 | 2.920015e-49 |
| MsG0180001358.01 | MsG0780041625.01 | -0.820351 | 7.182846e-53 | 5.669708e-50 |
| MsG0180001358.01 | MsG0880045503.01 | 0.808930 | 2.431494e-50 | 1.408258e-47 |
| MsG0180001358.01 | MsG0880045686.01 | 0.800986 | 1.113925e-48 | 5.259846e-46 |
| MsG0180001358.01 | MsG0880045703.01 | -0.827094 | 1.891476e-54 | 1.807769e-51 |
| MsG0180001358.01 | MsG0880045804.01 | 0.804955 | 1.685057e-49 | 8.805314e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180001358.01.T01 | MTR_1g035730 | 95.625 | 320 | 14 | 0 | 1 | 320 | 131 | 450 | 0.0 | 649 |
| MsG0180001358.01.T01 | MTR_1g069460 | 46.562 | 320 | 169 | 2 | 1 | 320 | 220 | 537 | 4.17e-97 | 300 |
| MsG0180001358.01.T01 | MTR_7g098650 | 45.625 | 320 | 172 | 2 | 1 | 320 | 145 | 462 | 1.92e-95 | 293 |
| MsG0180001358.01.T01 | MTR_4g129930 | 42.857 | 322 | 179 | 3 | 1 | 320 | 139 | 457 | 2.39e-87 | 270 |
| MsG0180001358.01.T01 | MTR_3g084400 | 42.470 | 332 | 186 | 3 | 1 | 330 | 136 | 464 | 4.55e-86 | 267 |
| MsG0180001358.01.T01 | MTR_5g055350 | 42.769 | 325 | 175 | 4 | 1 | 320 | 120 | 438 | 1.19e-85 | 265 |
| MsG0180001358.01.T01 | MTR_5g095940 | 42.415 | 323 | 182 | 2 | 1 | 320 | 162 | 483 | 1.65e-83 | 261 |
| MsG0180001358.01.T01 | MTR_1g102430 | 41.975 | 324 | 177 | 9 | 1 | 320 | 169 | 485 | 1.27e-76 | 243 |
| MsG0180001358.01.T01 | MTR_3g007840 | 40.248 | 323 | 166 | 3 | 1 | 320 | 90 | 388 | 8.62e-76 | 239 |
| MsG0180001358.01.T01 | MTR_5g010370 | 39.506 | 324 | 186 | 8 | 1 | 320 | 221 | 538 | 2.08e-75 | 241 |
| MsG0180001358.01.T01 | MTR_5g010350 | 38.700 | 323 | 188 | 8 | 2 | 320 | 198 | 514 | 6.42e-72 | 232 |
| MsG0180001358.01.T01 | MTR_5g095950 | 34.365 | 323 | 177 | 3 | 1 | 320 | 135 | 425 | 3.83e-56 | 190 |
| MsG0180001358.01.T01 | MTR_4g119810 | 34.604 | 341 | 197 | 10 | 1 | 319 | 103 | 439 | 1.91e-55 | 187 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180001358.01.T01 | AT1G68470 | 63.975 | 322 | 111 | 2 | 1 | 322 | 129 | 445 | 5.56e-157 | 447 |
| MsG0180001358.01.T01 | AT2G29040 | 46.296 | 324 | 168 | 5 | 1 | 320 | 362 | 683 | 6.22e-95 | 297 |
| MsG0180001358.01.T01 | AT2G20370 | 45.938 | 320 | 171 | 2 | 1 | 320 | 217 | 534 | 6.40e-94 | 291 |
| MsG0180001358.01.T01 | AT4G13990 | 43.789 | 322 | 175 | 5 | 1 | 320 | 163 | 480 | 1.45e-86 | 270 |
| MsG0180001358.01.T01 | AT4G13990 | 43.789 | 322 | 175 | 5 | 1 | 320 | 163 | 480 | 1.45e-86 | 270 |
| MsG0180001358.01.T01 | AT5G62220 | 43.675 | 332 | 174 | 11 | 1 | 327 | 187 | 510 | 1.92e-83 | 261 |
| MsG0180001358.01.T01 | AT2G31990 | 42.073 | 328 | 179 | 8 | 1 | 320 | 140 | 464 | 1.83e-82 | 258 |
| MsG0180001358.01.T01 | AT2G31990 | 42.073 | 328 | 179 | 8 | 1 | 320 | 148 | 472 | 2.02e-82 | 258 |
| MsG0180001358.01.T01 | AT2G31990 | 42.073 | 328 | 179 | 8 | 1 | 320 | 186 | 510 | 5.10e-82 | 258 |
| MsG0180001358.01.T01 | AT2G32740 | 40.000 | 325 | 183 | 8 | 1 | 320 | 139 | 456 | 3.46e-79 | 249 |
| MsG0180001358.01.T01 | AT2G32750 | 40.125 | 319 | 183 | 6 | 1 | 317 | 157 | 469 | 1.71e-78 | 249 |
| MsG0180001358.01.T01 | AT2G32750 | 40.125 | 319 | 183 | 6 | 1 | 317 | 155 | 467 | 1.83e-78 | 248 |
| MsG0180001358.01.T01 | AT5G41250 | 39.009 | 323 | 184 | 7 | 2 | 320 | 239 | 552 | 5.17e-75 | 241 |
| MsG0180001358.01.T01 | AT1G63450 | 39.752 | 322 | 185 | 8 | 2 | 320 | 341 | 656 | 1.22e-72 | 237 |
| MsG0180001358.01.T01 | AT4G22580 | 35.503 | 338 | 192 | 11 | 1 | 320 | 98 | 427 | 8.83e-58 | 192 |
| MsG0180001358.01.T01 | AT1G67410 | 27.668 | 253 | 123 | 10 | 8 | 236 | 114 | 330 | 1.24e-12 | 68.6 |
Find 80 sgRNAs with CRISPR-Local
Find 103 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCCTCAAGTGGGTCCGATTT+TGG | 0.211507 | 1:-19870242 | MsG0180001358.01.T01:CDS |
| GGAGGTGTTAATGGGAATTA+AGG | 0.251312 | 1:-19869676 | MsG0180001358.01.T01:CDS |
| TTGCACTTCAAGGAATTTCT+AGG | 0.273213 | 1:-19869548 | MsG0180001358.01.T01:CDS |
| TATGATTGAGGAGGTGTTAA+TGG | 0.285044 | 1:-19869685 | MsG0180001358.01.T01:CDS |
| ATGGAAGTGATGTTGGGTTT+AGG | 0.291151 | 1:-19869584 | MsG0180001358.01.T01:CDS |
| TGGAAGTGATGTTGGGTTTA+GGG | 0.307951 | 1:-19869583 | MsG0180001358.01.T01:CDS |
| TTTATTGGTGGTAAAAGAAA+AGG | 0.356201 | 1:-19870032 | MsG0180001358.01.T01:CDS |
| TTGTGATTGGTTTGATCCCT+AGG | 0.363693 | 1:-19869626 | MsG0180001358.01.T01:CDS |
| TAAGGAGAAAGATACTTATT+CGG | 0.369735 | 1:-19869745 | MsG0180001358.01.T01:CDS |
| TAGAATAAAATTGCTTGATT+CGG | 0.382393 | 1:+19870443 | None:intergenic |
| TAATATGTTGGCTCCAAAAT+CGG | 0.397853 | 1:+19870229 | None:intergenic |
| CTTTGCAAGTTGGTTGATTG+TGG | 0.403002 | 1:-19869954 | MsG0180001358.01.T01:CDS |
| ACCCAACATCACTTCCATTC+GGG | 0.422139 | 1:+19869589 | None:intergenic |
| TTTGCAAGTTGGTTGATTGT+GGG | 0.424528 | 1:-19869953 | MsG0180001358.01.T01:CDS |
| TAAGCACTTCCATTGGTTGA+TGG | 0.433760 | 1:+19869913 | None:intergenic |
| AACCCAACATCACTTCCATT+CGG | 0.447585 | 1:+19869588 | None:intergenic |
| AACAGTTGAACGACAACCTT+GGG | 0.449885 | 1:-19870171 | MsG0180001358.01.T01:CDS |
| GAATAAGTATCTTTCTCCTT+AGG | 0.450856 | 1:+19869747 | None:intergenic |
| GCTGTTGATGTTGCACTTCA+AGG | 0.452646 | 1:-19869558 | MsG0180001358.01.T01:CDS |
| ATGATTGAGGAGGTGTTAAT+GGG | 0.454804 | 1:-19869684 | MsG0180001358.01.T01:CDS |
| ACCCGAATGGAAGTGATGTT+GGG | 0.466760 | 1:-19869590 | MsG0180001358.01.T01:CDS |
| AAAATGCGTGAAGTTGTGAT+TGG | 0.474380 | 1:-19869639 | MsG0180001358.01.T01:CDS |
| TTATTGGTGGTAAAAGAAAA+GGG | 0.481389 | 1:-19870031 | MsG0180001358.01.T01:CDS |
| AAAGAAGAGTAATATGATTG+AGG | 0.481487 | 1:-19869697 | MsG0180001358.01.T01:CDS |
| GGTGGTAAAAGAAAAGGGTT+AGG | 0.485876 | 1:-19870026 | MsG0180001358.01.T01:CDS |
| GGATGAAAATACGACGGGTA+AGG | 0.495809 | 1:+19870125 | None:intergenic |
| AGCAAAGATTCGTGATGAGT+TGG | 0.496746 | 1:-19870000 | MsG0180001358.01.T01:CDS |
| TGCAAGTTGGTTGATTGTGG+GGG | 0.509533 | 1:-19869951 | MsG0180001358.01.T01:CDS |
| TTATTCTACATACCATTCTA+CGG | 0.516680 | 1:-19870428 | MsG0180001358.01.T01:CDS |
| CACCCGAATGGAAGTGATGT+TGG | 0.518128 | 1:-19869591 | MsG0180001358.01.T01:CDS |
| GATTTCATGCGGTCCTCAAG+TGG | 0.526085 | 1:-19870254 | MsG0180001358.01.T01:CDS |
| TGAGTCATCTCTTTGCAAGT+TGG | 0.526643 | 1:-19869964 | MsG0180001358.01.T01:CDS |
| ATCGATTAGATCAACGGCTA+GGG | 0.530004 | 1:+19870352 | None:intergenic |
| TATTCGGTTTATATTGAAGA+GGG | 0.531841 | 1:-19869729 | MsG0180001358.01.T01:CDS |
| GTTAGTTATGCGCACCCGAA+TGG | 0.531970 | 1:-19869603 | MsG0180001358.01.T01:CDS |
| GTGGAATCGTCGCAATGGTA+AGG | 0.536410 | 1:-19870309 | MsG0180001358.01.T01:CDS |
| TCCAAAATCGGACCCACTTG+AGG | 0.536553 | 1:+19870241 | None:intergenic |
| GGAAGTGCTTAGTGTTATGA+TGG | 0.538008 | 1:-19869901 | MsG0180001358.01.T01:CDS |
| GCGTGTAGTCCACCGTAGAA+TGG | 0.538340 | 1:+19870416 | None:intergenic |
| TGTGATTGGTTTGATCCCTA+GGG | 0.538386 | 1:-19869625 | MsG0180001358.01.T01:CDS |
| ATACCATTGGTATTTGCCTA+AGG | 0.541550 | 1:-19869763 | MsG0180001358.01.T01:CDS |
| TTCGGTTTATATTGAAGAGG+GGG | 0.546993 | 1:-19869727 | MsG0180001358.01.T01:CDS |
| ATGTACAAAGTCTACCTTGG+TGG | 0.552088 | 1:-19870328 | MsG0180001358.01.T01:CDS |
| TTTCTCTGGGAAGGACCGCA+TGG | 0.552309 | 1:-19870277 | MsG0180001358.01.T01:CDS |
| TACATGATCGATTAGATCAA+CGG | 0.552809 | 1:+19870346 | None:intergenic |
| AAAATCACGTGTGTCGCACG+TGG | 0.553844 | 1:-19870469 | MsG0180001358.01.T01:CDS |
| TCTCCTTAGGCAAATACCAA+TGG | 0.555859 | 1:+19869760 | None:intergenic |
| TGGGAAGGTTATAATCAAAA+CGG | 0.566648 | 1:-19870152 | MsG0180001358.01.T01:CDS |
| TTGCAAGTTGGTTGATTGTG+GGG | 0.567948 | 1:-19869952 | MsG0180001358.01.T01:CDS |
| ATAACACTAAGCACTTCCAT+TGG | 0.568604 | 1:+19869906 | None:intergenic |
| TTCTCTGGGAAGGACCGCAT+GGG | 0.570266 | 1:-19870276 | MsG0180001358.01.T01:CDS |
| TAACAGTTGAACGACAACCT+TGG | 0.570721 | 1:-19870172 | MsG0180001358.01.T01:CDS |
| GTTAATGGGAATTAAGGAGG+TGG | 0.571636 | 1:-19869670 | MsG0180001358.01.T01:CDS |
| ATAAAATGAGACAAAACGAC+AGG | 0.573735 | 1:-19870070 | MsG0180001358.01.T01:CDS |
| GATCGATTAGATCAACGGCT+AGG | 0.575788 | 1:+19870351 | None:intergenic |
| TGGTAGGTTTAATAATATGT+TGG | 0.579142 | 1:+19870217 | None:intergenic |
| CAGCGTATACGCAATACCAT+TGG | 0.583630 | 1:-19869776 | MsG0180001358.01.T01:CDS |
| GAAGAGTAATATGATTGAGG+AGG | 0.587479 | 1:-19869694 | MsG0180001358.01.T01:CDS |
| GGGTGCGCATAACTAACCCT+AGG | 0.588239 | 1:+19869609 | None:intergenic |
| CCTTGGTGGAATCGTCGCAA+TGG | 0.589304 | 1:-19870314 | MsG0180001358.01.T01:CDS |
| TAGTAAATGCCATCAACCAA+TGG | 0.589401 | 1:-19869922 | MsG0180001358.01.T01:CDS |
| CAAAAGAAGAAATGCTGACG+TGG | 0.592552 | 1:-19870097 | MsG0180001358.01.T01:CDS |
| TCGGTTTATATTGAAGAGGG+GGG | 0.595261 | 1:-19869726 | MsG0180001358.01.T01:CDS |
| ATTTCATGCGGTCCTCAAGT+GGG | 0.605471 | 1:-19870253 | MsG0180001358.01.T01:CDS |
| ATCATGTACAAAGTCTACCT+TGG | 0.607581 | 1:-19870331 | MsG0180001358.01.T01:CDS |
| CTTCTAGTAAAAGAATCACC+TGG | 0.626474 | 1:+19869855 | None:intergenic |
| GGTGCGCATAACTAACCCTA+GGG | 0.632069 | 1:+19869610 | None:intergenic |
| ATTCGGTTTATATTGAAGAG+GGG | 0.633941 | 1:-19869728 | MsG0180001358.01.T01:CDS |
| TTATTCGGTTTATATTGAAG+AGG | 0.635875 | 1:-19869730 | MsG0180001358.01.T01:CDS |
| TTCTACATACCATTCTACGG+TGG | 0.641049 | 1:-19870425 | MsG0180001358.01.T01:CDS |
| GTTGAACGACAACCTTGGGA+AGG | 0.641260 | 1:-19870167 | MsG0180001358.01.T01:CDS |
| GGTGTTAATGGGAATTAAGG+AGG | 0.648081 | 1:-19869673 | MsG0180001358.01.T01:CDS |
| GGAGAGTGTGATTCGCCTCG+CGG | 0.649710 | 1:+19870381 | None:intergenic |
| TATTGCGTATACGCTGTATG+TGG | 0.654666 | 1:+19869783 | None:intergenic |
| CGCTTCAAGCATGTTCCGCG+AGG | 0.663884 | 1:-19870396 | MsG0180001358.01.T01:CDS |
| AAATCACGTGTGTCGCACGT+GGG | 0.664225 | 1:-19870468 | MsG0180001358.01.T01:CDS |
| GGACCGCATGGGATTTCATG+CGG | 0.671183 | 1:-19870265 | MsG0180001358.01.T01:CDS |
| CCATTGCGACGATTCCACCA+AGG | 0.707079 | 1:+19870314 | None:intergenic |
| GATCAACGGCTAGGGCATCG+CGG | 0.732029 | 1:+19870360 | None:intergenic |
| GGACCGCATGAAATCCCATG+CGG | 0.771513 | 1:+19870262 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | CCAATAAATGAAAACAAAAA+CGG | + | Chr1:19869965-19869984 | None:intergenic | 20.0% |
| !! | TAGAATAAAATTGCTTGATT+CGG | + | Chr1:19869569-19869588 | None:intergenic | 20.0% |
| !!! | TTTTTGTTTTCATTTATTGG+TGG | - | Chr1:19869965-19869984 | MsG0180001358.01.T01:CDS | 20.0% |
| ! | AAAGAAGAGTAATATGATTG+AGG | - | Chr1:19870312-19870331 | MsG0180001358.01.T01:CDS | 25.0% |
| ! | TAAGGAGAAAGATACTTATT+CGG | - | Chr1:19870264-19870283 | MsG0180001358.01.T01:CDS | 25.0% |
| ! | TATTCGGTTTATATTGAAGA+GGG | - | Chr1:19870280-19870299 | MsG0180001358.01.T01:CDS | 25.0% |
| ! | TGGTAGGTTTAATAATATGT+TGG | + | Chr1:19869795-19869814 | None:intergenic | 25.0% |
| ! | TTATTCGGTTTATATTGAAG+AGG | - | Chr1:19870279-19870298 | MsG0180001358.01.T01:CDS | 25.0% |
| ! | TTATTCTACATACCATTCTA+CGG | - | Chr1:19869581-19869600 | MsG0180001358.01.T01:CDS | 25.0% |
| !! | TTATTGGTGGTAAAAGAAAA+GGG | - | Chr1:19869978-19869997 | MsG0180001358.01.T01:CDS | 25.0% |
| !! | TTTATTGGTGGTAAAAGAAA+AGG | - | Chr1:19869977-19869996 | MsG0180001358.01.T01:CDS | 25.0% |
| !!! | AAGGATCATTTTATTTCTCT+GGG | - | Chr1:19869719-19869738 | MsG0180001358.01.T01:CDS | 25.0% |
| !!! | AGCATTTCTTCTTTTGTTTT+TGG | + | Chr1:19869908-19869927 | None:intergenic | 25.0% |
| !!! | CCGTTTTTGTTTTCATTTAT+TGG | - | Chr1:19869962-19869981 | MsG0180001358.01.T01:CDS | 25.0% |
| !!! | TAAGGATCATTTTATTTCTC+TGG | - | Chr1:19869718-19869737 | MsG0180001358.01.T01:CDS | 25.0% |
| ATAAAATGAGACAAAACGAC+AGG | - | Chr1:19869939-19869958 | MsG0180001358.01.T01:CDS | 30.0% | |
| ATTCGGTTTATATTGAAGAG+GGG | - | Chr1:19870281-19870300 | MsG0180001358.01.T01:CDS | 30.0% | |
| GAATAAGTATCTTTCTCCTT+AGG | + | Chr1:19870265-19870284 | None:intergenic | 30.0% | |
| TACATGATCGATTAGATCAA+CGG | + | Chr1:19869666-19869685 | None:intergenic | 30.0% | |
| TGGGAAGGTTATAATCAAAA+CGG | - | Chr1:19869857-19869876 | MsG0180001358.01.T01:CDS | 30.0% | |
| ! | TTTTTGGATGAAAATACGAC+GGG | + | Chr1:19869892-19869911 | None:intergenic | 30.0% |
| !! | ATCATTTTATTTCTCTGGGA+AGG | - | Chr1:19869723-19869742 | MsG0180001358.01.T01:CDS | 30.0% |
| !! | GTTTTTGGATGAAAATACGA+CGG | + | Chr1:19869893-19869912 | None:intergenic | 30.0% |
| !! | TAATATGTTGGCTCCAAAAT+CGG | + | Chr1:19869783-19869802 | None:intergenic | 30.0% |
| !! | TTTTGATTATAACCTTCCCA+AGG | + | Chr1:19869857-19869876 | None:intergenic | 30.0% |
| AAAATGCGTGAAGTTGTGAT+TGG | - | Chr1:19870370-19870389 | MsG0180001358.01.T01:CDS | 35.0% | |
| ATAACACTAAGCACTTCCAT+TGG | + | Chr1:19870106-19870125 | None:intergenic | 35.0% | |
| ATACCATTGGTATTTGCCTA+AGG | - | Chr1:19870246-19870265 | MsG0180001358.01.T01:CDS | 35.0% | |
| ATCATGTACAAAGTCTACCT+TGG | - | Chr1:19869678-19869697 | MsG0180001358.01.T01:CDS | 35.0% | |
| CTTCTAGTAAAAGAATCACC+TGG | + | Chr1:19870157-19870176 | None:intergenic | 35.0% | |
| GAAGAGTAATATGATTGAGG+AGG | - | Chr1:19870315-19870334 | MsG0180001358.01.T01:CDS | 35.0% | |
| GTATGTGGAGAGAAAAATAC+AGG | + | Chr1:19870214-19870233 | None:intergenic | 35.0% | |
| TAGTAAATGCCATCAACCAA+TGG | - | Chr1:19870087-19870106 | MsG0180001358.01.T01:CDS | 35.0% | |
| TTCGGTTTATATTGAAGAGG+GGG | - | Chr1:19870282-19870301 | MsG0180001358.01.T01:CDS | 35.0% | |
| TTGCACTTCAAGGAATTTCT+AGG | - | Chr1:19870461-19870480 | MsG0180001358.01.T01:CDS | 35.0% | |
| ! | CAGGTGATTCTTTTACTAGA+AGG | - | Chr1:19870155-19870174 | MsG0180001358.01.T01:CDS | 35.0% |
| !! | AATTTCTAGGCTTTTGTTCG+AGG | - | Chr1:19870474-19870493 | MsG0180001358.01.T01:CDS | 35.0% |
| !! | ACTTTTGACTCTATACTTGC+TGG | - | Chr1:19870181-19870200 | MsG0180001358.01.T01:CDS | 35.0% |
| !! | ATGATTGAGGAGGTGTTAAT+GGG | - | Chr1:19870325-19870344 | MsG0180001358.01.T01:CDS | 35.0% |
| !! | TATGATTGAGGAGGTGTTAA+TGG | - | Chr1:19870324-19870343 | MsG0180001358.01.T01:CDS | 35.0% |
| !! | TTTGCAAGTTGGTTGATTGT+GGG | - | Chr1:19870056-19870075 | MsG0180001358.01.T01:CDS | 35.0% |
| AACAGTTGAACGACAACCTT+GGG | - | Chr1:19869838-19869857 | MsG0180001358.01.T01:CDS | 40.0% | |
| AACCCAACATCACTTCCATT+CGG | + | Chr1:19870424-19870443 | None:intergenic | 40.0% | |
| ACCACCTGTCAAAAACATGT+CGG | - | Chr1:19869811-19869830 | MsG0180001358.01.T01:CDS | 40.0% | |
| AGCAAAGATTCGTGATGAGT+TGG | - | Chr1:19870009-19870028 | MsG0180001358.01.T01:CDS | 40.0% | |
| ATCGATTAGATCAACGGCTA+GGG | + | Chr1:19869660-19869679 | None:intergenic | 40.0% | |
| ATGGAAGTGATGTTGGGTTT+AGG | - | Chr1:19870425-19870444 | MsG0180001358.01.T01:CDS | 40.0% | |
| ATGTACAAAGTCTACCTTGG+TGG | - | Chr1:19869681-19869700 | MsG0180001358.01.T01:CDS | 40.0% | |
| CAAAAGAAGAAATGCTGACG+TGG | - | Chr1:19869912-19869931 | MsG0180001358.01.T01:CDS | 40.0% | |
| GGTGGTAAAAGAAAAGGGTT+AGG | - | Chr1:19869983-19870002 | MsG0180001358.01.T01:CDS | 40.0% | |
| GGTGTTAATGGGAATTAAGG+AGG | - | Chr1:19870336-19870355 | MsG0180001358.01.T01:CDS | 40.0% | |
| GTTAATGGGAATTAAGGAGG+TGG | - | Chr1:19870339-19870358 | MsG0180001358.01.T01:CDS | 40.0% | |
| TAACAGTTGAACGACAACCT+TGG | - | Chr1:19869837-19869856 | MsG0180001358.01.T01:CDS | 40.0% | |
| TATTGCGTATACGCTGTATG+TGG | + | Chr1:19870229-19870248 | None:intergenic | 40.0% | |
| TCGGTTTATATTGAAGAGGG+GGG | - | Chr1:19870283-19870302 | MsG0180001358.01.T01:CDS | 40.0% | |
| TCTCCTTAGGCAAATACCAA+TGG | + | Chr1:19870252-19870271 | None:intergenic | 40.0% | |
| TGAGTCATCTCTTTGCAAGT+TGG | - | Chr1:19870045-19870064 | MsG0180001358.01.T01:CDS | 40.0% | |
| TGGAAGTGATGTTGGGTTTA+GGG | - | Chr1:19870426-19870445 | MsG0180001358.01.T01:CDS | 40.0% | |
| TTCTACATACCATTCTACGG+TGG | - | Chr1:19869584-19869603 | MsG0180001358.01.T01:CDS | 40.0% | |
| ! | CGTGATTTTCTAACCTAGCA+TGG | + | Chr1:19869529-19869548 | None:intergenic | 40.0% |
| ! | TAAGCACTTCCATTGGTTGA+TGG | + | Chr1:19870099-19870118 | None:intergenic | 40.0% |
| !! | ACATGTTTTTGACAGGTGGT+AGG | + | Chr1:19869811-19869830 | None:intergenic | 40.0% |
| !! | CTTTGCAAGTTGGTTGATTG+TGG | - | Chr1:19870055-19870074 | MsG0180001358.01.T01:CDS | 40.0% |
| !! | GGAAGTGCTTAGTGTTATGA+TGG | - | Chr1:19870108-19870127 | MsG0180001358.01.T01:CDS | 40.0% |
| !! | GGAGGTGTTAATGGGAATTA+AGG | - | Chr1:19870333-19870352 | MsG0180001358.01.T01:CDS | 40.0% |
| !! | TGTGATTGGTTTGATCCCTA+GGG | - | Chr1:19870384-19870403 | MsG0180001358.01.T01:CDS | 40.0% |
| !! | TTGCAAGTTGGTTGATTGTG+GGG | - | Chr1:19870057-19870076 | MsG0180001358.01.T01:CDS | 40.0% |
| !! | TTGTGATTGGTTTGATCCCT+AGG | - | Chr1:19870383-19870402 | MsG0180001358.01.T01:CDS | 40.0% |
| ACCCAACATCACTTCCATTC+GGG | + | Chr1:19870423-19870442 | None:intergenic | 45.0% | |
| ACCCGAATGGAAGTGATGTT+GGG | - | Chr1:19870419-19870438 | MsG0180001358.01.T01:CDS | 45.0% | |
| ATTTCATGCGGTCCTCAAGT+GGG | - | Chr1:19869756-19869775 | MsG0180001358.01.T01:CDS | 45.0% | |
| CAGCGTATACGCAATACCAT+TGG | - | Chr1:19870233-19870252 | MsG0180001358.01.T01:CDS | 45.0% | |
| GATCGATTAGATCAACGGCT+AGG | + | Chr1:19869661-19869680 | None:intergenic | 45.0% | |
| GCTGTTGATGTTGCACTTCA+AGG | - | Chr1:19870451-19870470 | MsG0180001358.01.T01:CDS | 45.0% | |
| GGATGAAAATACGACGGGTA+AGG | + | Chr1:19869887-19869906 | None:intergenic | 45.0% | |
| ! | CGTTTTTGTCTTCAAGCACC+AGG | - | Chr1:19870136-19870155 | MsG0180001358.01.T01:CDS | 45.0% |
| ! | TATATTGAAGAGGGGGGTGT+AGG | - | Chr1:19870289-19870308 | MsG0180001358.01.T01:CDS | 45.0% |
| !! | ACCGACATGTTTTTGACAGG+TGG | + | Chr1:19869815-19869834 | None:intergenic | 45.0% |
| !! | TGCAAGTTGGTTGATTGTGG+GGG | - | Chr1:19870058-19870077 | MsG0180001358.01.T01:CDS | 45.0% |
| !!! | AGCACCGACATGTTTTTGAC+AGG | + | Chr1:19869818-19869837 | None:intergenic | 45.0% |
| AAAATCACGTGTGTCGCACG+TGG | - | Chr1:19869540-19869559 | MsG0180001358.01.T01:CDS | 50.0% | |
| AAATCACGTGTGTCGCACGT+GGG | - | Chr1:19869541-19869560 | MsG0180001358.01.T01:CDS | 50.0% | |
| AGTTGGTTGATTGTGGGGGT+GGG | - | Chr1:19870062-19870081 | MsG0180001358.01.T01:CDS | 50.0% | |
| CACCCGAATGGAAGTGATGT+TGG | - | Chr1:19870418-19870437 | MsG0180001358.01.T01:CDS | 50.0% | |
| GATTTCATGCGGTCCTCAAG+TGG | - | Chr1:19869755-19869774 | MsG0180001358.01.T01:CDS | 50.0% | |
| GGTGCGCATAACTAACCCTA+GGG | + | Chr1:19870402-19870421 | None:intergenic | 50.0% | |
| GTGGAATCGTCGCAATGGTA+AGG | - | Chr1:19869700-19869719 | MsG0180001358.01.T01:CDS | 50.0% | |
| GTTAGTTATGCGCACCCGAA+TGG | - | Chr1:19870406-19870425 | MsG0180001358.01.T01:CDS | 50.0% | |
| GTTGAACGACAACCTTGGGA+AGG | - | Chr1:19869842-19869861 | MsG0180001358.01.T01:CDS | 50.0% | |
| TCCAAAATCGGACCCACTTG+AGG | + | Chr1:19869771-19869790 | None:intergenic | 50.0% | |
| ! | AAGTTGGTTGATTGTGGGGG+TGG | - | Chr1:19870061-19870080 | MsG0180001358.01.T01:CDS | 50.0% |
| ! | TCCTCAAGTGGGTCCGATTT+TGG | - | Chr1:19869767-19869786 | MsG0180001358.01.T01:CDS | 50.0% |
| CCATTGCGACGATTCCACCA+AGG | + | Chr1:19869698-19869717 | None:intergenic | 55.0% | |
| CCTTGGTGGAATCGTCGCAA+TGG | - | Chr1:19869695-19869714 | MsG0180001358.01.T01:CDS | 55.0% | |
| GCGTGTAGTCCACCGTAGAA+TGG | + | Chr1:19869596-19869615 | None:intergenic | 55.0% | |
| GGACCGCATGAAATCCCATG+CGG | + | Chr1:19869750-19869769 | None:intergenic | 55.0% | |
| GGACCGCATGGGATTTCATG+CGG | - | Chr1:19869744-19869763 | MsG0180001358.01.T01:CDS | 55.0% | |
| GGGTGCGCATAACTAACCCT+AGG | + | Chr1:19870403-19870422 | None:intergenic | 55.0% | |
| ! | TTCTCTGGGAAGGACCGCAT+GGG | - | Chr1:19869733-19869752 | MsG0180001358.01.T01:CDS | 55.0% |
| ! | TTTCTCTGGGAAGGACCGCA+TGG | - | Chr1:19869732-19869751 | MsG0180001358.01.T01:CDS | 55.0% |
| CGCTTCAAGCATGTTCCGCG+AGG | - | Chr1:19869613-19869632 | MsG0180001358.01.T01:CDS | 60.0% | |
| ! | GGAGAGTGTGATTCGCCTCG+CGG | + | Chr1:19869631-19869650 | None:intergenic | 60.0% |
| !! | GATCAACGGCTAGGGCATCG+CGG | + | Chr1:19869652-19869671 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr1 | gene | 19869518 | 19870513 | 19869518 | ID=MsG0180001358.01;Name=MsG0180001358.01 |
| Chr1 | mRNA | 19869518 | 19870513 | 19869518 | ID=MsG0180001358.01.T01;Parent=MsG0180001358.01;Name=MsG0180001358.01.T01;_AED=0.22;_eAED=0.22;_QI=0|-1|0|1|-1|1|1|0|331 |
| Chr1 | exon | 19869518 | 19870513 | 19869518 | ID=MsG0180001358.01.T01:exon:26057;Parent=MsG0180001358.01.T01 |
| Chr1 | CDS | 19869518 | 19870513 | 19869518 | ID=MsG0180001358.01.T01:cds;Parent=MsG0180001358.01.T01 |
| Gene Sequence |
| Protein sequence |
