AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0580028794.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0580028794.01.T01 MTR_5g041255 54.124 194 31 4 155 290 296 489 1.14e-55 187
MsG0580028794.01.T01 MTR_5g057040 52.577 194 34 3 155 290 835 1028 1.37e-52 185
MsG0580028794.01.T01 MTR_7g081462 54.545 77 25 2 122 191 93 166 8.06e-15 74.7
MsG0580028794.01.T01 MTR_3g020105 54.795 73 27 2 122 191 93 162 1.53e-14 73.6
MsG0580028794.01.T01 MTR_2g037220 70.000 50 12 1 142 191 120 166 3.14e-14 72.8
MsG0580028794.01.T01 MTR_3g048545 70.000 50 12 1 142 191 120 166 5.86e-14 72.0
MsG0580028794.01.T01 MTR_1g100210 82.927 41 7 0 4 44 51 91 1.03e-13 72.0
MsG0580028794.01.T01 MTR_6g025115 68.000 50 13 1 142 191 120 166 2.05e-13 70.5
MsG0580028794.01.T01 MTR_2g064025 81.081 37 7 0 155 191 124 160 3.56e-13 69.7
MsG0580028794.01.T01 MTR_2g076103 50.649 77 28 2 122 191 93 166 7.05e-13 68.9
MsG0580028794.01.T01 MTR_0260s0010 31.081 222 90 9 32 191 145 365 7.11e-13 69.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 88 sgRNAs with CRISPR-Local

Find 351 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGCCTTCTTGAACAGCCTTC+TGG 0.161232 5:-86583663 None:intergenic
TTGTGGTGTTTCCCTGCTTC+GGG 0.248958 5:-86583135 None:intergenic
GCCTTCTTGAACAGCCTTCT+GGG 0.261999 5:-86583662 None:intergenic
CAGGAGGCACTGTGAGAAAT+TGG 0.284825 5:+86583854 MsG0580028794.01.T01:CDS
GTCTCAGGACCAATGGTAAT+TGG 0.288083 5:-86583352 None:intergenic
AATGGGCTGGCCCGAGGGGC+TGG 0.299489 5:-86582867 None:intergenic
GTTGTGGTGTTTCCCTGCTT+CGG 0.336598 5:-86583136 None:intergenic
CAAGAAGGCAAGCTGCTGGC+TGG 0.357456 5:+86583676 MsG0580028794.01.T01:CDS
CTCTGAGGGTAGCAGCTATC+TGG 0.370657 5:+86583280 MsG0580028794.01.T01:intron
CGCTTCTTCTTCACTTCCAT+CGG 0.400413 5:-86579836 None:intergenic
GCCTGCAACAACTTGGGGTT+CGG 0.405428 5:+86583099 MsG0580028794.01.T01:CDS
AAGAAGGCAAGCTGCTGGCT+GGG 0.405698 5:+86583677 MsG0580028794.01.T01:CDS
CTTGTCTGATAAACTCTATC+TGG 0.407357 5:-86582800 None:intergenic
TCTTCAATGGGCTGGCCCGA+GGG 0.407712 5:-86582872 None:intergenic
ACCGAACCCCAAGTTGTTGC+AGG 0.423358 5:-86583100 None:intergenic
AGAAGGCAAGCTGCTGGCTG+GGG 0.423806 5:+86583678 MsG0580028794.01.T01:CDS
GACGATGAGCTCCCCGAAGC+AGG 0.424605 5:+86583123 MsG0580028794.01.T01:CDS
GCCCATTGAAGAGTCTAATC+TGG 0.424845 5:+86582883 MsG0580028794.01.T01:CDS
GTCTCTGTGGATCAGTTTGA+TGG 0.431638 5:+86583058 MsG0580028794.01.T01:intron
GAAGAGAATGCCAGCCCCTC+GGG 0.442727 5:+86582857 MsG0580028794.01.T01:CDS
GCCATGCTAGCACCAGCTCT+CGG 0.452994 5:-86583625 None:intergenic
CTCTTCAATGGGCTGGCCCG+AGG 0.458764 5:-86582873 None:intergenic
TTGTTAGTGTTAAGAAGTGC+AGG 0.459920 5:+86579983 MsG0580028794.01.T01:CDS
CAATTTCTCACAGTGCCTCC+TGG 0.462935 5:-86583853 None:intergenic
GATCCCGCAAAGATGTTCTC+GGG 0.468549 5:+86583317 MsG0580028794.01.T01:CDS
TTCCCCGAGAACATCTTTGC+GGG 0.470469 5:-86583320 None:intergenic
AGGATGATGAGTTGGAAGGC+GGG 0.473180 5:+86579927 MsG0580028794.01.T01:CDS
TCAGATTACTTTCCAAGTCA+TGG 0.473368 5:+86583378 MsG0580028794.01.T01:CDS
ATCCAGATTAGACTCTTCAA+TGG 0.476107 5:-86582885 None:intergenic
TATACTGCCTGCAACAACTT+GGG 0.484437 5:+86583093 MsG0580028794.01.T01:CDS
CAAAGATGTTCTCGGGGAAG+TGG 0.485747 5:+86583324 MsG0580028794.01.T01:CDS
CCATGCTAGCACCAGCTCTC+GGG 0.488280 5:-86583624 None:intergenic
TCCAGATTAGACTCTTCAAT+GGG 0.488315 5:-86582884 None:intergenic
AAAGTAATCTGAAATGTCTC+AGG 0.496195 5:-86583367 None:intergenic
GATTAGACTCTTCAATGGGC+TGG 0.496757 5:-86582880 None:intergenic
CTTCAATGGGCTGGCCCGAG+GGG 0.499765 5:-86582871 None:intergenic
TGTTCAAGAAGGCAAGCTGC+TGG 0.500851 5:+86583672 MsG0580028794.01.T01:CDS
ATATACTGCCTGCAACAACT+TGG 0.503197 5:+86583092 MsG0580028794.01.T01:CDS
CCCGAGAGCTGGTGCTAGCA+TGG 0.515825 5:+86583624 MsG0580028794.01.T01:CDS
GGATCCCGCAAAGATGTTCT+CGG 0.515997 5:+86583316 MsG0580028794.01.T01:CDS
GGAAGAGAATGCCAGCCCCT+CGG 0.520138 5:+86582856 MsG0580028794.01.T01:CDS
AGGGTGCAGAACCCGAGAGC+TGG 0.527281 5:+86583613 MsG0580028794.01.T01:intron
GGCTGGCATTCTCTTCCTCA+AGG 0.530605 5:-86582850 None:intergenic
AGCAGGGAAACACCACAACT+TGG 0.532381 5:+86583140 MsG0580028794.01.T01:CDS
AAGCATTGATATCCATGACT+TGG 0.533036 5:-86583390 None:intergenic
CTTCCCCGAGAACATCTTTG+CGG 0.539211 5:-86583321 None:intergenic
GAGGATGATGAGTTGGAAGG+CGG 0.542486 5:+86579926 MsG0580028794.01.T01:CDS
CATGACTAAAGGAACATCAA+TGG 0.543391 5:-86583880 None:intergenic
GCTGAAGATGCTGCTGAAAG+TGG 0.544328 5:+86583808 MsG0580028794.01.T01:CDS
TTCACTGAAAGATGCCCAGA+AGG 0.545889 5:+86583648 MsG0580028794.01.T01:CDS
GGGATAAGATGCGCGAAAGT+GGG 0.546006 5:+86579948 MsG0580028794.01.T01:CDS
GTGGACTTGCCAATTACCAT+TGG 0.546459 5:+86583343 MsG0580028794.01.T01:CDS
CCTCCTGGTATAACAAATGC+AGG 0.548701 5:-86583838 None:intergenic
TATGAGGATGATGAGTTGGA+AGG 0.549023 5:+86579923 MsG0580028794.01.T01:CDS
CTGAAATGTCTCAGGACCAA+TGG 0.550903 5:-86583359 None:intergenic
GTCCGCCGCAGTCTGAAAAG+TGG 0.558473 5:+86582755 MsG0580028794.01.T01:intron
GGATGATGAGTTGGAAGGCG+GGG 0.559899 5:+86579928 MsG0580028794.01.T01:CDS
AAGCTCAAGTTCATGAGGAA+TGG 0.562004 5:+86583481 MsG0580028794.01.T01:CDS
GGGGATAAGATGCGCGAAAG+TGG 0.563896 5:+86579947 MsG0580028794.01.T01:CDS
GTGCCTGCATTTGTTATACC+AGG 0.566668 5:+86583835 MsG0580028794.01.T01:CDS
GCCCAGAAGGCTGTTCAAGA+AGG 0.567296 5:+86583661 MsG0580028794.01.T01:CDS
ATACTGCCTGCAACAACTTG+GGG 0.569844 5:+86583094 MsG0580028794.01.T01:CDS
GCTTCTTACAGCTGTCTCCT+CGG 0.573703 5:+86583409 MsG0580028794.01.T01:CDS
GCTCCAGCGTCGTGGATCCA+CGG 0.576288 5:-86583436 None:intergenic
ACGATGAGCTCCCCGAAGCA+GGG 0.579526 5:+86583124 MsG0580028794.01.T01:CDS
CTTGAGCTTCTGATGCAAAG+TGG 0.579877 5:-86583467 None:intergenic
TGTTAAGAAGTGCAGGAGAG+TGG 0.580173 5:+86579990 MsG0580028794.01.T01:CDS
AGACCGTGGATCCACGACGC+TGG 0.581551 5:+86583433 MsG0580028794.01.T01:CDS
GGATCAGTTTGATGGAATAG+TGG 0.589815 5:+86583066 MsG0580028794.01.T01:intron
GGTAAGATTGTCACTGTGCA+TGG 0.592385 5:+86583502 MsG0580028794.01.T01:CDS
CTATCTGGTAAAGCTTTCGA+TGG 0.596419 5:+86583295 MsG0580028794.01.T01:CDS
TCTGATAAACTCTATCTGGT+TGG 0.597052 5:-86582796 None:intergenic
AAGAAACATGGCTAACCTTG+AGG 0.604805 5:+86582835 MsG0580028794.01.T01:CDS
AAGTTACTGCTCCAGCGTCG+TGG 0.618744 5:-86583444 None:intergenic
TGTGGTGTTTCCCTGCTTCG+GGG 0.625669 5:-86583134 None:intergenic
CGTGGATCCACGGTCTTCCG+AGG 0.628108 5:-86583426 None:intergenic
CTAATCTGGATGAAATTCTG+AGG 0.631385 5:+86582897 MsG0580028794.01.T01:CDS
TGATTATGATTCACGATCGA+AGG 0.635848 5:+86579862 MsG0580028794.01.T01:CDS
CTACATATCTCAGTACATTG+TGG 0.638453 5:+86583165 MsG0580028794.01.T01:CDS
ATCAGAAGCTCAAGTTCATG+AGG 0.638522 5:+86583476 MsG0580028794.01.T01:CDS
TTATGATTCACGATCGAAGG+TGG 0.650422 5:+86579865 MsG0580028794.01.T01:CDS
GCTGTCTCCTCGGAAGACCG+TGG 0.657797 5:+86583419 MsG0580028794.01.T01:CDS
CCTGCATTTGTTATACCAGG+AGG 0.671959 5:+86583838 MsG0580028794.01.T01:CDS
ATTGTACAAGAGAAGAAACA+TGG 0.682469 5:+86582823 MsG0580028794.01.T01:CDS
ATCCCGCAAAGATGTTCTCG+GGG 0.683499 5:+86583318 MsG0580028794.01.T01:CDS
GATTGTCACTGTGCATGGTG+AGG 0.685658 5:+86583507 MsG0580028794.01.T01:CDS
ATGGAAGTGAAGAAGAAGCG+TGG 0.687011 5:+86579839 MsG0580028794.01.T01:CDS
AGATATGTAGAGCCAAGTTG+TGG 0.698540 5:-86583152 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATTAAACATTTATTCACAT+AGG - Chr5:86581929-86581948 None:intergenic 15.0%
!! CATTTATCAAGAATAAAAAA+AGG - Chr5:86580305-86580324 None:intergenic 15.0%
!! TTGAAATTTGATTAAGAAAA+TGG - Chr5:86581299-86581318 None:intergenic 15.0%
!!! ATAAAAATTCCATATGTTTT+TGG + Chr5:86580344-86580363 MsG0580028794.01.T01:intron 15.0%
!!! TTTTATTTTAGTTGAATTGA+AGG - Chr5:86581523-86581542 None:intergenic 15.0%
!! AAAATGGAAAGAAAATACAA+TGG - Chr5:86581283-86581302 None:intergenic 20.0%
!! AAATGGAAAGAAAATACAAT+GGG - Chr5:86581282-86581301 None:intergenic 20.0%
!! AACAAAAATGTATGAAAGAT+GGG - Chr5:86580903-86580922 None:intergenic 20.0%
!! AAGAAAAAATAAGATATCAC+CGG + Chr5:86581756-86581775 MsG0580028794.01.T01:intron 20.0%
!! CATGAAAGTAAAATATTACA+AGG - Chr5:86581000-86581019 None:intergenic 20.0%
!! TTCATGCAATTTAAATTTCT+TGG + Chr5:86581014-86581033 MsG0580028794.01.T01:intron 20.0%
!! TTGAAATGTTATTAAACCTA+AGG - Chr5:86581588-86581607 None:intergenic 20.0%
!!! CAAAAATGTTTTTGTTTTGT+TGG - Chr5:86581443-86581462 None:intergenic 20.0%
!!! GTGATATCTTATTTTTTCTT+GGG - Chr5:86581756-86581775 None:intergenic 20.0%
!!! GTTGATTTTAAGTTTGAAAA+TGG - Chr5:86581421-86581440 None:intergenic 20.0%
! AAAGAAAATACAATGGGATT+TGG - Chr5:86581276-86581295 None:intergenic 25.0%
! AAAGATAGGACAAATTTACA+AGG - Chr5:86580546-86580565 None:intergenic 25.0%
! AAATGATCAAGACTAATCAA+AGG - Chr5:86580372-86580391 None:intergenic 25.0%
! AACTAAAAGTTTAGTTGAGA+TGG - Chr5:86582573-86582592 None:intergenic 25.0%
! ATATAATCGACAATTCATTC+CGG + Chr5:86582019-86582038 MsG0580028794.01.T01:intron 25.0%
! ATGTGATTGTATATACTTCT+AGG + Chr5:86580836-86580855 MsG0580028794.01.T01:intron 25.0%
! CCATTATTAACAATTTGCAA+AGG - Chr5:86580456-86580475 None:intergenic 25.0%
! CCTTTGCAAATTGTTAATAA+TGG + Chr5:86580453-86580472 MsG0580028794.01.T01:intron 25.0%
! GAACAAAAATGTATGAAAGA+TGG - Chr5:86580904-86580923 None:intergenic 25.0%
! TAAAATATTACAAGGATCCT+AGG - Chr5:86580992-86581011 None:intergenic 25.0%
! TTATTGCATAAAGAAATGGT+AGG - Chr5:86580879-86580898 None:intergenic 25.0%
! TTCACATTTGTTTGGAAAAT+TGG - Chr5:86581216-86581235 None:intergenic 25.0%
! TTCTATCATAACACACATTT+AGG - Chr5:86580609-86580628 None:intergenic 25.0%
!! AATCTTTATGCCTTATGTTT+TGG + Chr5:86580627-86580646 MsG0580028794.01.T01:intron 25.0%
!! ATACAATCACATAGAGTTTT+TGG - Chr5:86580828-86580847 None:intergenic 25.0%
!! GTTTTCTAAGTATAAATCCT+AGG - Chr5:86581194-86581213 None:intergenic 25.0%
!! GTTTTTATAAGCACATGAAA+TGG - Chr5:86580802-86580821 None:intergenic 25.0%
!! TTAGGATTAAAACTTGTTCT+TGG + Chr5:86580392-86580411 MsG0580028794.01.T01:intron 25.0%
!!! AAGAAAAGTACCAAAACATA+AGG - Chr5:86580640-86580659 None:intergenic 25.0%
!!! ACATTTTTGAAAGAGAACTA+CGG + Chr5:86581454-86581473 MsG0580028794.01.T01:intron 25.0%
!!! ACTTTTTTCCATGCATTTAT+CGG + Chr5:86582496-86582515 MsG0580028794.01.T01:intron 25.0%
!!! ATCTTATTTTTTCTTGGGAA+GGG - Chr5:86581751-86581770 None:intergenic 25.0%
!!! ATTTTTGGAGCATTTTTCAT+AGG - Chr5:86580513-86580532 None:intergenic 25.0%
!!! GATTAGTCTTGATCATTTTT+AGG + Chr5:86580374-86580393 MsG0580028794.01.T01:intron 25.0%
!!! GGTGATATCTTATTTTTTCT+TGG - Chr5:86581757-86581776 None:intergenic 25.0%
!!! TATCTTATTTTTTCTTGGGA+AGG - Chr5:86581752-86581771 None:intergenic 25.0%
AAATTAAAGACGGTTCCTAT+AGG + Chr5:86581639-86581658 MsG0580028794.01.T01:intron 30.0%
ATAAAGCTAAAGACACAAGA+TGG - Chr5:86580941-86580960 None:intergenic 30.0%
ATAGGTTACTATAGTCGTTA+TGG + Chr5:86581657-86581676 MsG0580028794.01.T01:intron 30.0%
ATTGTACAAGAGAAGAAACA+TGG + Chr5:86582823-86582842 MsG0580028794.01.T01:CDS 30.0%
GCATGTTTAGATGTATGTTT+AGG + Chr5:86581148-86581167 MsG0580028794.01.T01:intron 30.0%
GGGATTATTGCATAAAGAAA+TGG - Chr5:86580883-86580902 None:intergenic 30.0%
TAACGACTATAGTAACCTAT+AGG - Chr5:86581657-86581676 None:intergenic 30.0%
TAATTCATGCAAGAAAACCT+AGG + Chr5:86580972-86580991 MsG0580028794.01.T01:intron 30.0%
TAGGTTACTATAGTCGTTAT+GGG + Chr5:86581658-86581677 MsG0580028794.01.T01:intron 30.0%
TATAATCGACAATTCATTCC+GGG + Chr5:86582020-86582039 MsG0580028794.01.T01:intron 30.0%
TCAAAGGAACCAAAAACATA+TGG - Chr5:86580356-86580375 None:intergenic 30.0%
TGAAGTTGTTCACATTTGTT+TGG - Chr5:86581224-86581243 None:intergenic 30.0%
! AAAACTTGTTCTTGGAAATG+TGG + Chr5:86580400-86580419 MsG0580028794.01.T01:intron 30.0%
! AAAGTAATCTGAAATGTCTC+AGG - Chr5:86583370-86583389 None:intergenic 30.0%
! AACCTTTTTCCAAATAACCT+TGG + Chr5:86581247-86581266 MsG0580028794.01.T01:intron 30.0%
! AAGTCATCTTTTGAACATCA+CGG + Chr5:86582528-86582547 MsG0580028794.01.T01:intron 30.0%
! ACCTTTTTCCAAATAACCTT+GGG + Chr5:86581248-86581267 MsG0580028794.01.T01:intron 30.0%
! CCTATCTTTTACTTGTGATT+GGG + Chr5:86580557-86580576 MsG0580028794.01.T01:intron 30.0%
! GAAATCGAGTAGTTTTTATG+AGG + Chr5:86579907-86579926 MsG0580028794.01.T01:CDS 30.0%
! GTTTAATTTCTTGCAAACGT+GGG + Chr5:86581941-86581960 MsG0580028794.01.T01:intron 30.0%
! TACGTTTGAACCTTTTAAAC+CGG - Chr5:86581778-86581797 None:intergenic 30.0%
! TATACTTCTAGGCATTTTGT+TGG + Chr5:86580847-86580866 MsG0580028794.01.T01:intron 30.0%
! TCCTATCTTTTACTTGTGAT+TGG + Chr5:86580556-86580575 MsG0580028794.01.T01:intron 30.0%
! TGCATGATTATGTTCAAGTT+CGG - Chr5:86582457-86582476 None:intergenic 30.0%
! TGGTAAAAAGCATAGAAACA+TGG - Chr5:86580782-86580801 None:intergenic 30.0%
! TGTTTAATTTCTTGCAAACG+TGG + Chr5:86581940-86581959 MsG0580028794.01.T01:intron 30.0%
! TTTAATTTCTTGCAAACGTG+GGG + Chr5:86581942-86581961 MsG0580028794.01.T01:intron 30.0%
! TTTTTATGAGGATGATGAGT+TGG + Chr5:86579919-86579938 MsG0580028794.01.T01:CDS 30.0%
!! AGCTGTTTTATCTTGGTTTT+CGG - Chr5:86581816-86581835 None:intergenic 30.0%
!! TAAGATATCACCGGTTTAAA+AGG + Chr5:86581765-86581784 MsG0580028794.01.T01:intron 30.0%
!!! AAAAGACTCTTTTTTGTCAG+AGG - Chr5:86582658-86582677 None:intergenic 30.0%
!!! CTTTTTTCCATGCATTTATC+GGG + Chr5:86582497-86582516 MsG0580028794.01.T01:intron 30.0%
!!! TGCGTTTGAAGCATTTTTTA+AGG - Chr5:86580664-86580683 None:intergenic 30.0%
AAGAGCCATAGAATGTATCT+AGG + Chr5:86581039-86581058 MsG0580028794.01.T01:intron 35.0%
ACACAAGAGAAAGATGATAC+TGG - Chr5:86583546-86583565 None:intergenic 35.0%
AGAAACATGGAACATACAAG+AGG - Chr5:86580769-86580788 None:intergenic 35.0%
AGAGCCATAGAATGTATCTA+GGG + Chr5:86581040-86581059 MsG0580028794.01.T01:intron 35.0%
ATAATCGACAATTCATTCCG+GGG + Chr5:86582021-86582040 MsG0580028794.01.T01:intron 35.0%
ATCCAGATTAGACTCTTCAA+TGG - Chr5:86582888-86582907 None:intergenic 35.0%
ATTTGGATCCCAAGGTTATT+TGG - Chr5:86581259-86581278 None:intergenic 35.0%
CATACCCTAGATACATTCTA+TGG - Chr5:86581047-86581066 None:intergenic 35.0%
CATGAGATTGGAAAATAGTG+AGG - Chr5:86581368-86581387 None:intergenic 35.0%
CCCAATCACAAGTAAAAGAT+AGG - Chr5:86580560-86580579 None:intergenic 35.0%
CTAATCTGGATGAAATTCTG+AGG + Chr5:86582897-86582916 MsG0580028794.01.T01:CDS 35.0%
CTACATATCTCAGTACATTG+TGG + Chr5:86583165-86583184 MsG0580028794.01.T01:CDS 35.0%
CTGAGTGAACTTAGGATTTA+GGG + Chr5:86581994-86582013 MsG0580028794.01.T01:intron 35.0%
CTTGTCTGATAAACTCTATC+TGG - Chr5:86582803-86582822 None:intergenic 35.0%
GAAAACCAAGATAAAACAGC+TGG + Chr5:86581815-86581834 MsG0580028794.01.T01:intron 35.0%
GAAACCTTACTAGCAATTTG+AGG - Chr5:86580172-86580191 None:intergenic 35.0%
GCATCATATGCATCATTCAT+CGG + Chr5:86582694-86582713 MsG0580028794.01.T01:intron 35.0%
GGAGTTTGAAGAATAGAAAG+AGG - Chr5:86581400-86581419 None:intergenic 35.0%
GTATGTTTAGATGAATGCCT+AGG + Chr5:86581174-86581193 MsG0580028794.01.T01:intron 35.0%
TCAGATTACTTTCCAAGTCA+TGG + Chr5:86583378-86583397 MsG0580028794.01.T01:CDS 35.0%
TCCAGATTAGACTCTTCAAT+GGG - Chr5:86582887-86582906 None:intergenic 35.0%
TCCCAAGGTTATTTGGAAAA+AGG - Chr5:86581252-86581271 None:intergenic 35.0%
TCTGATAAACTCTATCTGGT+TGG - Chr5:86582799-86582818 None:intergenic 35.0%
TCTTCACTTAGAACATCCTT+AGG + Chr5:86581569-86581588 MsG0580028794.01.T01:intron 35.0%
TGAGTGAACTTAGGATTTAG+GGG + Chr5:86581995-86582014 MsG0580028794.01.T01:intron 35.0%
TGATTATGATTCACGATCGA+AGG + Chr5:86579862-86579881 MsG0580028794.01.T01:CDS 35.0%
TTAATTTCTTGCAAACGTGG+GGG + Chr5:86581943-86581962 MsG0580028794.01.T01:intron 35.0%
TTAGTTGAGATGGTATCACT+TGG - Chr5:86582563-86582582 None:intergenic 35.0%
TTGGAAAACAAGCGTAAAGA+GGG + Chr5:86583717-86583736 MsG0580028794.01.T01:intron 35.0%
TTTGGAAAACAAGCGTAAAG+AGG + Chr5:86583716-86583735 MsG0580028794.01.T01:intron 35.0%
! GGATGTTCTAAGTGAAGAAT+TGG - Chr5:86581567-86581586 None:intergenic 35.0%
! GTATCTAGGGTATGATGTAA+AGG + Chr5:86581053-86581072 MsG0580028794.01.T01:intron 35.0%
! GTTCTAAGTGAAGAATTGGA+GGG - Chr5:86581563-86581582 None:intergenic 35.0%
! TGTTCTAAGTGAAGAATTGG+AGG - Chr5:86581564-86581583 None:intergenic 35.0%
! TTGTTAGTGTTAAGAAGTGC+AGG + Chr5:86579983-86580002 MsG0580028794.01.T01:CDS 35.0%
! TTTTTGCTTCCAAAGATGTG+TGG + Chr5:86580724-86580743 MsG0580028794.01.T01:intron 35.0%
!! AAGCATTGATATCCATGACT+TGG - Chr5:86583393-86583412 None:intergenic 35.0%
!! ATAGTAACCGGGTTCTAAAA+AGG - Chr5:86582354-86582373 None:intergenic 35.0%
!! GCTGTTTTATCTTGGTTTTC+GGG - Chr5:86581815-86581834 None:intergenic 35.0%
!! GCTTTAGGATAATAGTAACC+GGG - Chr5:86582365-86582384 None:intergenic 35.0%
!! GGCTTTAGGATAATAGTAAC+CGG - Chr5:86582366-86582385 None:intergenic 35.0%
AAGAAACATGGCTAACCTTG+AGG + Chr5:86582835-86582854 MsG0580028794.01.T01:CDS 40.0%
AAGAATAGAAAGAGGCCTCA+AGG - Chr5:86581392-86581411 None:intergenic 40.0%
AAGACACAAGATGGAACAAG+AGG - Chr5:86580932-86580951 None:intergenic 40.0%
AAGCTCAAGTTCATGAGGAA+TGG + Chr5:86583481-86583500 MsG0580028794.01.T01:CDS 40.0%
AAGTTCGGAGAAAACATGGT+GGG - Chr5:86582442-86582461 None:intergenic 40.0%
AATATCAAAAGTCCTGCACC+CGG + Chr5:86581970-86581989 MsG0580028794.01.T01:intron 40.0%
ACAAGAGGCAAATTCACATG+TGG - Chr5:86580754-86580773 None:intergenic 40.0%
ACTAAAACTCGAGACAACAC+CGG - Chr5:86582227-86582246 None:intergenic 40.0%
AGAATAGAAAGAGGCCTCAA+GGG - Chr5:86581391-86581410 None:intergenic 40.0%
AGACACAAGATGGAACAAGA+GGG - Chr5:86580931-86580950 None:intergenic 40.0%
AGACAGATGGATATCTTGAG+GGG - Chr5:86582968-86582987 None:intergenic 40.0%
AGACCTTCCACGTATAATCA+TGG + Chr5:86582272-86582291 MsG0580028794.01.T01:intron 40.0%
AGAGACAGATGGATATCTTG+AGG - Chr5:86582970-86582989 None:intergenic 40.0%
AGATATGTAGAGCCAAGTTG+TGG - Chr5:86583155-86583174 None:intergenic 40.0%
ATATACTGCCTGCAACAACT+TGG + Chr5:86583092-86583111 MsG0580028794.01.T01:CDS 40.0%
ATCAGAAGCTCAAGTTCATG+AGG + Chr5:86583476-86583495 MsG0580028794.01.T01:CDS 40.0%
ATCGCATAATCCAAAACACG+AGG - Chr5:86582051-86582070 None:intergenic 40.0%
CAAAAATGAGAACAAAGCCC+AGG - Chr5:86580097-86580116 None:intergenic 40.0%
CAAAGTGGTTGTGAACATCA+CGG - Chr5:86582629-86582648 None:intergenic 40.0%
CAAGCGTGGAAATAAAGACT+AGG - Chr5:86581871-86581890 None:intergenic 40.0%
CATCATTCATCGGTCACAAA+TGG + Chr5:86582704-86582723 MsG0580028794.01.T01:intron 40.0%
CGGTGATTTGATCCCTTAAA+CGG + Chr5:86581474-86581493 MsG0580028794.01.T01:intron 40.0%
CTATCTGGTAAAGCTTTCGA+TGG + Chr5:86583295-86583314 MsG0580028794.01.T01:CDS 40.0%
CTTGCCTCAAATTGCTAGTA+AGG + Chr5:86580165-86580184 MsG0580028794.01.T01:intron 40.0%
CTTTCTCTTGTGTTGAAGCA+GGG + Chr5:86583553-86583572 MsG0580028794.01.T01:intron 40.0%
GAGACAGATGGATATCTTGA+GGG - Chr5:86582969-86582988 None:intergenic 40.0%
GAGTGAACTTAGGATTTAGG+GGG + Chr5:86581996-86582015 MsG0580028794.01.T01:intron 40.0%
GCTGAGTGAACTTAGGATTT+AGG + Chr5:86581993-86582012 MsG0580028794.01.T01:intron 40.0%
GGATCAGTTTGATGGAATAG+TGG + Chr5:86583066-86583085 MsG0580028794.01.T01:intron 40.0%
GGGTATGATGTAAAGGACAA+TGG + Chr5:86581060-86581079 MsG0580028794.01.T01:intron 40.0%
GGTGATTTGATCCCTTAAAC+GGG + Chr5:86581475-86581494 MsG0580028794.01.T01:intron 40.0%
TAAAAATACAAGCGCAAGCG+TGG - Chr5:86581885-86581904 None:intergenic 40.0%
TAAGGCAATTGAGTCCATCA+TGG + Chr5:86583253-86583272 MsG0580028794.01.T01:intron 40.0%
TAATCGACAATTCATTCCGG+GGG + Chr5:86582022-86582041 MsG0580028794.01.T01:intron 40.0%
TACATCCTAGAAAATGGCCA+TGG - Chr5:86582190-86582209 None:intergenic 40.0%
TAGATAACCAAACCCATCCA+TGG + Chr5:86582170-86582189 MsG0580028794.01.T01:intron 40.0%
TATACTGCCTGCAACAACTT+GGG + Chr5:86583093-86583112 MsG0580028794.01.T01:CDS 40.0%
TCCATCATGGAATTCTCTGA+GGG + Chr5:86583266-86583285 MsG0580028794.01.T01:intron 40.0%
TCTAAGTCCCGATAAATGCA+TGG - Chr5:86582507-86582526 None:intergenic 40.0%
TCTTTCTCTTGTGTTGAAGC+AGG + Chr5:86583552-86583571 MsG0580028794.01.T01:intron 40.0%
TTATGATTCACGATCGAAGG+TGG + Chr5:86579865-86579884 MsG0580028794.01.T01:CDS 40.0%
TTGGGAAGAGAAGTGATTCT+AGG + Chr5:86580038-86580057 MsG0580028794.01.T01:intron 40.0%
TTTCAAGGCTTGACTGTTGA+GGG + Chr5:86583594-86583613 MsG0580028794.01.T01:intron 40.0%
! AGAGAAGTGATTCTAGGAAG+AGG + Chr5:86580044-86580063 MsG0580028794.01.T01:intron 40.0%
! GGGCAAAGTGATTCAGATTT+TGG + Chr5:86583698-86583717 MsG0580028794.01.T01:intron 40.0%
! GTTCAAGTTCGGAGAAAACA+TGG - Chr5:86582446-86582465 None:intergenic 40.0%
! TATGAGGATGATGAGTTGGA+AGG + Chr5:86579923-86579942 MsG0580028794.01.T01:CDS 40.0%
! TGGAGGGAGAAGAATGTTTT+TGG - Chr5:86581547-86581566 None:intergenic 40.0%
! TGGATGGGTTTGGTTATCTA+CGG - Chr5:86582170-86582189 None:intergenic 40.0%
!! ATGATGGACTCAATTGCCTT+AGG - Chr5:86583254-86583273 None:intergenic 40.0%
!! CATTTTGGAGGTGATGTTGT+CGG + Chr5:86582090-86582109 MsG0580028794.01.T01:intron 40.0%
!!! CCATTTTCTAGGATGTAGTG+CGG + Chr5:86582193-86582212 MsG0580028794.01.T01:intron 40.0%
!!! TTGGGAACCTTTTTAGAACC+CGG + Chr5:86582344-86582363 MsG0580028794.01.T01:intron 40.0%
AAACCAGGAGACAATGAGCA+CGG - Chr5:86582734-86582753 None:intergenic 45.0%
AAGCAAACCCTTGAGAATCG+AGG - Chr5:86581721-86581740 None:intergenic 45.0%
AAGGGATGTGCAGATAGCAA+AGG - Chr5:86580126-86580145 None:intergenic 45.0%
AATCCTAAGTTCACTCAGCC+CGG - Chr5:86581992-86582011 None:intergenic 45.0%
ACAATGGGATTTGGATCCCA+AGG - Chr5:86581267-86581286 None:intergenic 45.0%
ACCCTCAGAGAATTCCATGA+TGG - Chr5:86583270-86583289 None:intergenic 45.0%
ACCTGATATCCAACGTTTGG+TGG + Chr5:86583192-86583211 MsG0580028794.01.T01:intron 45.0%
ACTCGCTCCATGATTATACG+TGG - Chr5:86582282-86582301 None:intergenic 45.0%
AGAGACCTACTTGGCAAGAA+GGG - Chr5:86580144-86580163 None:intergenic 45.0%
AGTTCAAAGTCGAGGAGTCA+TGG - Chr5:86582415-86582434 None:intergenic 45.0%
ATACTGCCTGCAACAACTTG+GGG + Chr5:86583094-86583113 MsG0580028794.01.T01:CDS 45.0%
ATATCAAAAGTCCTGCACCC+GGG + Chr5:86581971-86581990 MsG0580028794.01.T01:intron 45.0%
ATGGAAGTGAAGAAGAAGCG+TGG + Chr5:86579839-86579858 MsG0580028794.01.T01:CDS 45.0%
ATGGACTCAATTGCCTTAGG+TGG - Chr5:86583251-86583270 None:intergenic 45.0%
CAAGTTCGGAGAAAACATGG+TGG - Chr5:86582443-86582462 None:intergenic 45.0%
CCAAAATGCCTCAGCTATGT+GGG - Chr5:86582078-86582097 None:intergenic 45.0%
CCGCACTACATCCTAGAAAA+TGG - Chr5:86582196-86582215 None:intergenic 45.0%
CCTAGAAAATGGCCATGGAT+GGG - Chr5:86582185-86582204 None:intergenic 45.0%
CCTCCTGGTATAACAAATGC+AGG - Chr5:86583841-86583860 None:intergenic 45.0%
CTGAAATGTCTCAGGACCAA+TGG - Chr5:86583362-86583381 None:intergenic 45.0%
CTGACCTGATATCCAACGTT+TGG + Chr5:86583189-86583208 MsG0580028794.01.T01:intron 45.0%
CTTGAGCTTCTGATGCAAAG+TGG - Chr5:86583470-86583489 None:intergenic 45.0%
GATGAACCCAGCACTGTAAA+AGG - Chr5:86583779-86583798 None:intergenic 45.0%
GATTAGACTCTTCAATGGGC+TGG - Chr5:86582883-86582902 None:intergenic 45.0%
GCCCATTGAAGAGTCTAATC+TGG + Chr5:86582883-86582902 MsG0580028794.01.T01:CDS 45.0%
GCGCGCGTAGAAATTAAAGA+CGG + Chr5:86581629-86581648 MsG0580028794.01.T01:intron 45.0%
GCTCCATGATTATACGTGGA+AGG - Chr5:86582278-86582297 None:intergenic 45.0%
GGTAAGATTGTCACTGTGCA+TGG + Chr5:86583502-86583521 MsG0580028794.01.T01:CDS 45.0%
GTAATGCCTGAATCCACCTA+AGG + Chr5:86583235-86583254 MsG0580028794.01.T01:intron 45.0%
GTCCATCATGGAATTCTCTG+AGG + Chr5:86583265-86583284 MsG0580028794.01.T01:intron 45.0%
GTCTCAGGACCAATGGTAAT+TGG - Chr5:86583355-86583374 None:intergenic 45.0%
GTCTCTGTGGATCAGTTTGA+TGG + Chr5:86583058-86583077 MsG0580028794.01.T01:intron 45.0%
GTGAACATCACGGAGAAACA+CGG - Chr5:86582619-86582638 None:intergenic 45.0%
GTGGACTTGCCAATTACCAT+TGG + Chr5:86583343-86583362 MsG0580028794.01.T01:CDS 45.0%
GTTCAAAGTCGAGGAGTCAT+GGG - Chr5:86582414-86582433 None:intergenic 45.0%
GTTTCAAGGCTTGACTGTTG+AGG + Chr5:86583593-86583612 MsG0580028794.01.T01:intron 45.0%
TCCAAAATGCCTCAGCTATG+TGG - Chr5:86582079-86582098 None:intergenic 45.0%
TCCACCAAACGTTGGATATC+AGG - Chr5:86583196-86583215 None:intergenic 45.0%
TCCCTTGAAACAGCAGATGT+CGG - Chr5:86583756-86583775 None:intergenic 45.0%
TCCTAAAGCCCTAGTTTCAC+CGG + Chr5:86582376-86582395 MsG0580028794.01.T01:intron 45.0%
TCCTAGAAAATGGCCATGGA+TGG - Chr5:86582186-86582205 None:intergenic 45.0%
TGTCAGAGGACTTGTCAAAG+TGG - Chr5:86582644-86582663 None:intergenic 45.0%
TGTGATGTGTGTGCATGTGT+CGG - Chr5:86581114-86581133 None:intergenic 45.0%
TGTGGCATTCCACACATCTT+TGG - Chr5:86580736-86580755 None:intergenic 45.0%
TTCACTGAAAGATGCCCAGA+AGG + Chr5:86583648-86583667 MsG0580028794.01.T01:CDS 45.0%
TTGCCTACGTACCCGTTTAA+GGG - Chr5:86581489-86581508 None:intergenic 45.0%
TTTCCAATCTCATGCCCTTG+AGG + Chr5:86581374-86581393 MsG0580028794.01.T01:intron 45.0%
! AAAATGGCCATGGATGGGTT+TGG - Chr5:86582180-86582199 None:intergenic 45.0%
! AAGGGACCTTTTACAGTGCT+GGG + Chr5:86583770-86583789 MsG0580028794.01.T01:intron 45.0%
! AAGGTGATGGCAGCAAGATT+GGG + Chr5:86580020-86580039 MsG0580028794.01.T01:intron 45.0%
! CAAGGCGTGACGTCTATTTT+TGG - Chr5:86580528-86580547 None:intergenic 45.0%
! CAATTGCCTTAGGTGGATTC+AGG - Chr5:86583244-86583263 None:intergenic 45.0%
! TGGGTTGAAGTTCAAAGTCG+AGG - Chr5:86582423-86582442 None:intergenic 45.0%
! TGTTAAGAAGTGCAGGAGAG+TGG + Chr5:86579990-86580009 MsG0580028794.01.T01:CDS 45.0%
!! ACATAGCTGAGGCATTTTGG+AGG + Chr5:86582078-86582097 MsG0580028794.01.T01:intron 45.0%
!! AGTCGCCAGCTGTTTTATCT+TGG - Chr5:86581823-86581842 None:intergenic 45.0%
!! CCTGCATTTGTTATACCAGG+AGG + Chr5:86583838-86583857 MsG0580028794.01.T01:CDS 45.0%
!! GTGCCTGCATTTGTTATACC+AGG + Chr5:86583835-86583854 MsG0580028794.01.T01:CDS 45.0%
!!! TTTTCTAGGATGTAGTGCGG+AGG + Chr5:86582196-86582215 MsG0580028794.01.T01:intron 45.0%
AAAACAGCTGGCGACTTCAC+TGG + Chr5:86581827-86581846 MsG0580028794.01.T01:intron 50.0%
AAACAGCTGGCGACTTCACT+GGG + Chr5:86581828-86581847 MsG0580028794.01.T01:intron 50.0%
AACAAGCGTAAAGAGGGCCT+TGG + Chr5:86583723-86583742 MsG0580028794.01.T01:intron 50.0%
AACCAGGAGACAATGAGCAC+GGG - Chr5:86582733-86582752 None:intergenic 50.0%
AACCCTTGAGAATCGAGGTC+CGG - Chr5:86581716-86581735 None:intergenic 50.0%
AACCTCTCCGACGTATCTCA+TGG - Chr5:86582319-86582338 None:intergenic 50.0%
AACTGATCCACAGAGACTCG+TGG - Chr5:86583055-86583074 None:intergenic 50.0%
AGCAGGGAAACACCACAACT+TGG + Chr5:86583140-86583159 MsG0580028794.01.T01:CDS 50.0%
AGCTCATGAGCAGAGACAGA+TGG - Chr5:86582981-86583000 None:intergenic 50.0%
ATCCAGTGTCCACCAAACGT+TGG - Chr5:86583204-86583223 None:intergenic 50.0%
ATCCCGCAAAGATGTTCTCG+GGG + Chr5:86583318-86583337 MsG0580028794.01.T01:CDS 50.0%
ATCCTAAGTTCACTCAGCCC+GGG - Chr5:86581991-86582010 None:intergenic 50.0%
ATGTAGTGCGGAGGCTAAAC+CGG + Chr5:86582205-86582224 MsG0580028794.01.T01:intron 50.0%
ATGTTGACCACGAGTCTCTG+TGG + Chr5:86583045-86583064 MsG0580028794.01.T01:intron 50.0%
CAAAGATGTTCTCGGGGAAG+TGG + Chr5:86583324-86583343 MsG0580028794.01.T01:CDS 50.0%
CAATTTCTCACAGTGCCTCC+TGG - Chr5:86583856-86583875 None:intergenic 50.0%
CACATCCCTTCTTGCCAAGT+AGG + Chr5:86580136-86580155 MsG0580028794.01.T01:intron 50.0%
CAGAGACCTACTTGGCAAGA+AGG - Chr5:86580145-86580164 None:intergenic 50.0%
CCCTTGAAACAGCAGATGTC+GGG - Chr5:86583755-86583774 None:intergenic 50.0%
CCTTGAAACAGCAGATGTCG+GGG - Chr5:86583754-86583773 None:intergenic 50.0%
CGATCAATCCCACATAGCTG+AGG + Chr5:86582067-86582086 MsG0580028794.01.T01:intron 50.0%
CGTGACACCATGAGATACGT+CGG + Chr5:86582309-86582328 MsG0580028794.01.T01:intron 50.0%
CTTAAACGGGTACGTAGGCA+AGG + Chr5:86581488-86581507 MsG0580028794.01.T01:intron 50.0%
CTTCCCCGAGAACATCTTTG+CGG - Chr5:86583324-86583343 None:intergenic 50.0%
CTTGCCTACGTACCCGTTTA+AGG - Chr5:86581490-86581509 None:intergenic 50.0%
GATCCCGCAAAGATGTTCTC+GGG + Chr5:86583317-86583336 MsG0580028794.01.T01:CDS 50.0%
GATCCCTTAAACGGGTACGT+AGG + Chr5:86581483-86581502 MsG0580028794.01.T01:intron 50.0%
GATTGTCACTGTGCATGGTG+AGG + Chr5:86583507-86583526 MsG0580028794.01.T01:CDS 50.0%
GCCTTCTTGAACAGCCTTCT+GGG - Chr5:86583665-86583684 None:intergenic 50.0%
GCTGAAGATGCTGCTGAAAG+TGG + Chr5:86583808-86583827 MsG0580028794.01.T01:CDS 50.0%
GCTTCTTACAGCTGTCTCCT+CGG + Chr5:86583409-86583428 MsG0580028794.01.T01:CDS 50.0%
GGATCCCGCAAAGATGTTCT+CGG + Chr5:86583316-86583335 MsG0580028794.01.T01:CDS 50.0%
GGGATAAGATGCGCGAAAGT+GGG + Chr5:86579948-86579967 MsG0580028794.01.T01:CDS 50.0%
GTTGTGGTGTTTCCCTGCTT+CGG - Chr5:86583139-86583158 None:intergenic 50.0%
TCCGGTGAAACTAGGGCTTT+AGG - Chr5:86582380-86582399 None:intergenic 50.0%
TGCCTTCTTGAACAGCCTTC+TGG - Chr5:86583666-86583685 None:intergenic 50.0%
TGTTCAAGAAGGCAAGCTGC+TGG + Chr5:86583672-86583691 MsG0580028794.01.T01:CDS 50.0%
TTCCCCGAGAACATCTTTGC+GGG - Chr5:86583323-86583342 None:intergenic 50.0%
TTGAAACGACGTCCCTTCAG+CGG - Chr5:86583580-86583599 None:intergenic 50.0%
TTGTGGTGTTTCCCTGCTTC+GGG - Chr5:86583138-86583157 None:intergenic 50.0%
! AGGATGATGAGTTGGAAGGC+GGG + Chr5:86579927-86579946 MsG0580028794.01.T01:CDS 50.0%
! ATCCAACGTTTGGTGGACAC+TGG + Chr5:86583199-86583218 MsG0580028794.01.T01:intron 50.0%
! CAAGGGACCTTTTACAGTGC+TGG + Chr5:86583769-86583788 MsG0580028794.01.T01:intron 50.0%
! GAAGGTGATGGCAGCAAGAT+TGG + Chr5:86580019-86580038 MsG0580028794.01.T01:intron 50.0%
! GAGGATGATGAGTTGGAAGG+CGG + Chr5:86579926-86579945 MsG0580028794.01.T01:CDS 50.0%
!! CAGGAGGCACTGTGAGAAAT+TGG + Chr5:86583854-86583873 MsG0580028794.01.T01:CDS 50.0%
!! CCCACATAGCTGAGGCATTT+TGG + Chr5:86582075-86582094 MsG0580028794.01.T01:intron 50.0%
!! CCCATCCATGGCCATTTTCT+AGG + Chr5:86582182-86582201 MsG0580028794.01.T01:intron 50.0%
!! CCCGACATCTGCTGTTTCAA+GGG + Chr5:86583752-86583771 MsG0580028794.01.T01:intron 50.0%
!! GAGTGGTTCTGAGAAGGTGA+TGG + Chr5:86580007-86580026 MsG0580028794.01.T01:intron 50.0%
!! GAGTTGTTTTCGCTACGGGA+AGG - Chr5:86581693-86581712 None:intergenic 50.0%
!! TCCGGGAGTTGTTTTCGCTA+CGG - Chr5:86581698-86581717 None:intergenic 50.0%
!! TTTCGCTACGGGAAGGTGTT+AGG - Chr5:86581686-86581705 None:intergenic 50.0%
!!! ACGAGCCACTTTTCAGACTG+CGG - Chr5:86582763-86582782 None:intergenic 50.0%
AACAGCTGGCGACTTCACTG+GGG + Chr5:86581829-86581848 MsG0580028794.01.T01:intron 55.0%
AAGTTACTGCTCCAGCGTCG+TGG - Chr5:86583447-86583466 None:intergenic 55.0%
ACACGGTGTCCGGTGAAACT+AGG - Chr5:86582388-86582407 None:intergenic 55.0%
ACCCTTGAGAATCGAGGTCC+GGG - Chr5:86581715-86581734 None:intergenic 55.0%
ACCGAACCCCAAGTTGTTGC+AGG - Chr5:86583103-86583122 None:intergenic 55.0%
ACGTCGGAGAGGTTGCAACT+TGG + Chr5:86582325-86582344 MsG0580028794.01.T01:intron 55.0%
CAAAGTCGAGGAGTCATGGG+TGG - Chr5:86582411-86582430 None:intergenic 55.0%
CACCATGAGATACGTCGGAG+AGG + Chr5:86582314-86582333 MsG0580028794.01.T01:intron 55.0%
CACGGTGTCCGGTGAAACTA+GGG - Chr5:86582387-86582406 None:intergenic 55.0%
CAGATGTCGGGGAGAATCCA+AGG - Chr5:86583743-86583762 None:intergenic 55.0%
CCCGTAGCGAAAACAACTCC+CGG + Chr5:86581694-86581713 MsG0580028794.01.T01:intron 55.0%
CGTCGGAGAGGTTGCAACTT+GGG + Chr5:86582326-86582345 MsG0580028794.01.T01:intron 55.0%
GAGGCAAGCAGAGACCTACT+TGG - Chr5:86580153-86580172 None:intergenic 55.0%
GCCCAGAAGGCTGTTCAAGA+AGG + Chr5:86583661-86583680 MsG0580028794.01.T01:CDS 55.0%
GCCTGCAACAACTTGGGGTT+CGG + Chr5:86583099-86583118 MsG0580028794.01.T01:CDS 55.0%
GCTGAAGGGACGTCGTTTCA+AGG + Chr5:86583579-86583598 MsG0580028794.01.T01:intron 55.0%
GGCTGGCATTCTCTTCCTCA+AGG - Chr5:86582853-86582872 None:intergenic 55.0%
GGGGATAAGATGCGCGAAAG+TGG + Chr5:86579947-86579966 MsG0580028794.01.T01:CDS 55.0%
GTCTCTGCTCATGAGCTCAG+AGG + Chr5:86582984-86583003 MsG0580028794.01.T01:intron 55.0%
TCATGAGCTCAGAGGCTCAC+AGG + Chr5:86582992-86583011 MsG0580028794.01.T01:intron 55.0%
TCCCGGACCTCGATTCTCAA+GGG + Chr5:86581711-86581730 MsG0580028794.01.T01:intron 55.0%
TGCTGCGTGGCTTCATGAGT+GGG + Chr5:86580069-86580088 MsG0580028794.01.T01:intron 55.0%
TGTGGTGTTTCCCTGCTTCG+GGG - Chr5:86583137-86583156 None:intergenic 55.0%
TTCCCGTGCTCATTGTCTCC+TGG + Chr5:86582728-86582747 MsG0580028794.01.T01:intron 55.0%
TTGAAGCAGGGTCCGCTGAA+GGG + Chr5:86583565-86583584 MsG0580028794.01.T01:intron 55.0%
! AAGAAGGCAAGCTGCTGGCT+GGG + Chr5:86583677-86583696 MsG0580028794.01.T01:CDS 55.0%
! AGGCCTCAAGGGCATGAGAT+TGG - Chr5:86581380-86581399 None:intergenic 55.0%
! CTCTGAGGGTAGCAGCTATC+TGG + Chr5:86583280-86583299 MsG0580028794.01.T01:intron 55.0%
! GCATGTGTCGGTGCTTGTGT+CGG - Chr5:86581102-86581121 None:intergenic 55.0%
! GGATGATGAGTTGGAAGGCG+GGG + Chr5:86579928-86579947 MsG0580028794.01.T01:CDS 55.0%
!! CCCCGACATCTGCTGTTTCA+AGG + Chr5:86583751-86583770 MsG0580028794.01.T01:intron 55.0%
!! CCGGGAGTTGTTTTCGCTAC+GGG - Chr5:86581697-86581716 None:intergenic 55.0%
!! GCAGGAGAGTGGTTCTGAGA+AGG + Chr5:86580001-86580020 MsG0580028794.01.T01:intron 55.0%
!!! AGCCACTTTTCAGACTGCGG+CGG - Chr5:86582760-86582779 None:intergenic 55.0%
ACGATGAGCTCCCCGAAGCA+GGG + Chr5:86583124-86583143 MsG0580028794.01.T01:CDS 60.0%
AGACTGCGGCGGACAAAACC+AGG - Chr5:86582749-86582768 None:intergenic 60.0%
CAAGAAGGCAAGCTGCTGGC+TGG + Chr5:86583676-86583695 MsG0580028794.01.T01:CDS 60.0%
CACCCGGGCTGAGTGAACTT+AGG + Chr5:86581986-86582005 MsG0580028794.01.T01:intron 60.0%
CCAAAACACGAGGCAACCCC+CGG - Chr5:86582041-86582060 None:intergenic 60.0%
CCATGCTAGCACCAGCTCTC+GGG - Chr5:86583627-86583646 None:intergenic 60.0%
CGAGGAGTCATGGGTGGACA+CGG - Chr5:86582405-86582424 None:intergenic 60.0%
CTCCCGGACCTCGATTCTCA+AGG + Chr5:86581710-86581729 MsG0580028794.01.T01:intron 60.0%
CTGCGTGGCTTCATGAGTGG+GGG + Chr5:86580071-86580090 MsG0580028794.01.T01:intron 60.0%
CTTGAGGGGTTTGCAGCAGC+TGG - Chr5:86582954-86582973 None:intergenic 60.0%
GAAGAGAATGCCAGCCCCTC+GGG + Chr5:86582857-86582876 MsG0580028794.01.T01:CDS 60.0%
GCCATGCTAGCACCAGCTCT+CGG - Chr5:86583628-86583647 None:intergenic 60.0%
GCTGCGTGGCTTCATGAGTG+GGG + Chr5:86580070-86580089 MsG0580028794.01.T01:intron 60.0%
GGAAGAGAATGCCAGCCCCT+CGG + Chr5:86582856-86582875 MsG0580028794.01.T01:CDS 60.0%
GTCCGCCGCAGTCTGAAAAG+TGG + Chr5:86582755-86582774 MsG0580028794.01.T01:intron 60.0%
GTGCTGCGTGGCTTCATGAG+TGG + Chr5:86580068-86580087 MsG0580028794.01.T01:intron 60.0%
GTTGAAGCAGGGTCCGCTGA+AGG + Chr5:86583564-86583583 MsG0580028794.01.T01:intron 60.0%
TCATGGGTGGACACGGTGTC+CGG - Chr5:86582398-86582417 None:intergenic 60.0%
! AGAAGGCAAGCTGCTGGCTG+GGG + Chr5:86583678-86583697 MsG0580028794.01.T01:CDS 60.0%
!! CTAGGAAGAGGAGTGCTGCG+TGG + Chr5:86580056-86580075 MsG0580028794.01.T01:intron 60.0%
!! TCTTCAATGGGCTGGCCCGA+GGG - Chr5:86582875-86582894 None:intergenic 60.0%
AGACCGTGGATCCACGACGC+TGG + Chr5:86583433-86583452 MsG0580028794.01.T01:CDS 65.0%
AGGGTGCAGAACCCGAGAGC+TGG + Chr5:86583613-86583632 MsG0580028794.01.T01:intron 65.0%
AGTTCACTCAGCCCGGGTGC+AGG - Chr5:86581985-86582004 None:intergenic 65.0%
CGGCGCGAGTTGTCGCGTTT+AGG + Chr5:86582110-86582129 MsG0580028794.01.T01:intron 65.0%
CGTGGATCCACGGTCTTCCG+AGG - Chr5:86583429-86583448 None:intergenic 65.0%
GACGATGAGCTCCCCGAAGC+AGG + Chr5:86583123-86583142 MsG0580028794.01.T01:CDS 65.0%
GCTCCAGCGTCGTGGATCCA+CGG - Chr5:86583439-86583458 None:intergenic 65.0%
GCTGTCTCCTCGGAAGACCG+TGG + Chr5:86583419-86583438 MsG0580028794.01.T01:CDS 65.0%
GGCTTCATGAGTGGGGGCCT+GGG + Chr5:86580077-86580096 MsG0580028794.01.T01:intron 65.0%
TGGCTTCATGAGTGGGGGCC+TGG + Chr5:86580076-86580095 MsG0580028794.01.T01:intron 65.0%
! CCCGAGAGCTGGTGCTAGCA+TGG + Chr5:86583624-86583643 MsG0580028794.01.T01:CDS 65.0%
! CCGGGGGTTGCCTCGTGTTT+TGG + Chr5:86582038-86582057 MsG0580028794.01.T01:intron 65.0%
!! CTCTTCAATGGGCTGGCCCG+AGG - Chr5:86582876-86582895 None:intergenic 65.0%
!! CTTCAATGGGCTGGCCCGAG+GGG - Chr5:86582874-86582893 None:intergenic 65.0%
!! AATGGGCTGGCCCGAGGGGC+TGG - Chr5:86582870-86582889 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
Chr5 gene 86579839 86583897 86579839 ID=MsG0580028794.01;Name=MsG0580028794.01
Chr5 mRNA 86579839 86583897 86579839 ID=MsG0580028794.01.T01;Parent=MsG0580028794.01;Name=MsG0580028794.01.T01;_AED=0.55;_eAED=0.55;_QI=0|0|0|0.83|1|1|6|0|296
Chr5 exon 86579839 86580011 86579839 ID=MsG0580028794.01.T01:exon:11639;Parent=MsG0580028794.01.T01
Chr5 exon 86582766 86582931 86582766 ID=MsG0580028794.01.T01:exon:11640;Parent=MsG0580028794.01.T01
Chr5 exon 86583073 86583186 86583073 ID=MsG0580028794.01.T01:exon:11641;Parent=MsG0580028794.01.T01
Chr5 exon 86583295 86583537 86583295 ID=MsG0580028794.01.T01:exon:11642;Parent=MsG0580028794.01.T01
Chr5 exon 86583622 86583704 86583622 ID=MsG0580028794.01.T01:exon:11643;Parent=MsG0580028794.01.T01
Chr5 exon 86583786 86583897 86583786 ID=MsG0580028794.01.T01:exon:11644;Parent=MsG0580028794.01.T01
Chr5 CDS 86579839 86580011 86579839 ID=MsG0580028794.01.T01:cds;Parent=MsG0580028794.01.T01
Chr5 CDS 86582766 86582931 86582766 ID=MsG0580028794.01.T01:cds;Parent=MsG0580028794.01.T01
Chr5 CDS 86583073 86583186 86583073 ID=MsG0580028794.01.T01:cds;Parent=MsG0580028794.01.T01
Chr5 CDS 86583295 86583537 86583295 ID=MsG0580028794.01.T01:cds;Parent=MsG0580028794.01.T01
Chr5 CDS 86583622 86583704 86583622 ID=MsG0580028794.01.T01:cds;Parent=MsG0580028794.01.T01
Chr5 CDS 86583786 86583897 86583786 ID=MsG0580028794.01.T01:cds;Parent=MsG0580028794.01.T01
Gene Sequence

>MsG0580028794.01.T01

ATGGAAGTGAAGAAGAAGCGTGGTGATTATGATTCACGATCGAAGGTGGCTGTGAAGAATACATTAGAGAAATCGAGTAGTTTTTATGAGGATGATGAGTTGGAAGGCGGGGATAAGATGCGCGAAAGTGGGATGAAGTTGATGTTGTTAGTGTTAAGAAGTGCAGGAGAGTGTCTGAAAAGTGGCTCGTGCTCGCAAGTTTACCAACCAGATAGAGTTTATCAGACAAGATTGTACAAGAGAAGAAACATGGCTAACCTTGAGGAAGAGAATGCCAGCCCCTCGGGCCAGCCCATTGAAGAGTCTAATCTGGATGAAATTCTGAGGCTTATCAAAAGATTTGATGGAATAGTGGTATATATACTGCCTGCAACAACTTGGGGTTCGGTGACGATGAGCTCCCCGAAGCAGGGAAACACCACAACTTGGCTCTACATATCTCAGTACATTGTGCTATCTGGTAAAGCTTTCGATGGATCCCGCAAAGATGTTCTCGGGGAAGTGGACTTGCCAATTACCATTGGTCCTGAGACATTTCAGATTACTTTCCAAGTCATGGATATCAATGCTTCTTACAGCTGTCTCCTCGGAAGACCGTGGATCCACGACGCTGGAGCAGTAACTTCCACTTTGCATCAGAAGCTCAAGTTCATGAGGAATGGTAAGATTGTCACTGTGCATGGTGAGGAATATCTAAACCCGAGAGCTGGTGCTAGCATGGCTTCACTGAAAGATGCCCAGAAGGCTGTTCAAGAAGGCAAGCTGCTGGCTGGGGCAAATGCTGGGTTCATCAATGCTATTGCTGAAGATGCTGCTGAAAGTGGTCACGTGCCTGCATTTGTTATACCAGGAGGCACTGTGAGAAATTGGAAGCCATTGATGTTCCTTTAG
Protein sequence

>MsG0580028794.01.T01

MEVKKKRGDYDSRSKVAVKNTLEKSSSFYEDDELEGGDKMRESGMKLMLLVLRSAGECLKSGSCSQVYQPDRVYQTRLYKRRNMANLEEENASPSGQPIEESNLDEILRLIKRFDGIVVYILPATTWGSVTMSSPKQGNTTTWLYISQYIVLSGKAFDGSRKDVLGEVDLPITIGPETFQITFQVMDINASYSCLLGRPWIHDAGAVTSTLHQKLKFMRNGKIVTVHGEEYLNPRAGASMASLKDAQKAVQEGKLLAGANAGFINAIAEDAAESGHVPAFVIPGGTVRNWKPLMFL*