AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0580028810.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0580028810.01.T01 MTR_5g076320 79.402 903 116 6 1 853 1 883 0.0 1429
MsG0580028810.01.T01 MTR_5g076310 70.785 866 222 12 1 854 1 847 0.0 1193
MsG0580028810.01.T01 MTR_5g076380 64.751 905 259 14 1 869 1 881 0.0 1090
MsG0580028810.01.T01 MTR_5g076500 62.668 892 251 15 1 854 2 849 0.0 1011
MsG0580028810.01.T01 MTR_5g076440 60.198 907 289 17 6 863 12 895 0.0 989
MsG0580028810.01.T01 MTR_5g076330 54.195 882 336 13 9 847 2 858 0.0 877
MsG0580028810.01.T01 MTR_3g064190 54.279 888 346 15 6 854 4 870 0.0 866
MsG0580028810.01.T01 MTR_5g076300 50.440 910 375 18 1 854 1 890 0.0 803
MsG0580028810.01.T01 MTR_3g436400 37.045 880 462 23 17 837 18 864 2.33e-170 536
MsG0580028810.01.T01 MTR_0189s0030 38.117 871 431 21 46 840 8 846 1.67e-166 536
MsG0580028810.01.T01 MTR_3g064210 50.117 427 190 6 430 841 518 936 7.48e-129 414
MsG0580028810.01.T01 MTR_3g064210 40.594 404 216 6 17 407 13 405 8.05e-79 277
MsG0580028810.01.T01 MTR_8g020390 38.339 313 174 9 511 815 457 758 1.76e-50 192
MsG0580028810.01.T01 MTR_8g020390 39.241 316 167 10 511 815 745 1046 5.47e-50 191
MsG0580028810.01.T01 MTR_8g020390 39.241 316 167 10 511 815 962 1263 1.04e-49 191
MsG0580028810.01.T01 MTR_5g053930 34.294 347 215 7 519 861 455 792 1.02e-45 177
MsG0580028810.01.T01 MTR_1g052700 36.900 271 160 6 553 818 41 305 3.36e-44 163
MsG0580028810.01.T01 MTR_2g105760 38.284 303 163 7 534 819 1778 2073 2.09e-43 172
MsG0580028810.01.T01 MTR_3g078040 44.843 223 102 9 38 256 56 261 2.63e-43 159
MsG0580028810.01.T01 MTR_5g013820 32.961 358 206 13 509 855 606 940 1.31e-37 153
MsG0580028810.01.T01 MTR_5g013820 32.961 358 206 13 509 855 606 940 1.45e-37 152
MsG0580028810.01.T01 MTR_7g092200 37.500 296 160 11 520 806 348 627 6.71e-32 133
MsG0580028810.01.T01 MTR_5g080800 51.818 110 48 1 732 841 9 113 3.68e-29 126
MsG0580028810.01.T01 MTR_1g040155 34.228 298 159 12 519 795 590 871 9.23e-25 111
MsG0580028810.01.T01 MTR_5g006890 32.491 277 160 8 547 806 282 548 3.82e-23 105
MsG0580028810.01.T01 MTR_2g049990 32.491 277 160 8 547 806 282 548 4.16e-23 105
MsG0580028810.01.T01 MTR_5g006890 32.967 273 156 8 547 802 541 803 4.30e-23 106
MsG0580028810.01.T01 MTR_2g049990 32.967 273 156 8 547 802 541 803 4.73e-23 106
MsG0580028810.01.T01 MTR_1g038815 25.405 555 300 24 278 789 892 1375 9.04e-20 95.9
MsG0580028810.01.T01 MTR_4g061370 44.954 109 55 2 38 146 527 630 2.10e-17 88.2
MsG0580028810.01.T01 MTR_8g063020 44.898 98 47 3 38 134 199 290 1.77e-15 79.0
MsG0580028810.01.T01 MTR_1g047040 64.706 51 13 1 782 827 4 54 3.48e-12 63.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0580028810.01.T01 AT1G65810 45.305 852 419 15 17 843 22 851 0.0 681
MsG0580028810.01.T01 AT1G65810 45.305 852 419 15 17 843 22 851 0.0 680
MsG0580028810.01.T01 AT1G65810 45.305 852 419 15 17 843 22 851 0.0 680
MsG0580028810.01.T01 AT1G65780 43.243 888 401 19 17 838 11 861 0.0 627
MsG0580028810.01.T01 AT5G37150 40.260 847 442 14 16 834 8 818 0.0 593
MsG0580028810.01.T01 AT5G52090 44.709 671 323 13 196 834 1 655 0.0 538
MsG0580028810.01.T01 AT5G37140 45.087 692 311 15 186 834 6 671 0.0 538
MsG0580028810.01.T01 AT4G05540 43.212 685 312 15 167 801 32 689 4.50e-165 497
MsG0580028810.01.T01 AT5G37165 47.952 415 199 4 425 833 1 404 1.79e-123 379
MsG0580028810.01.T01 AT5G37030 59.184 294 119 1 539 831 343 636 1.29e-116 369
MsG0580028810.01.T01 AT5G37030 36.082 388 197 9 16 400 8 347 1.11e-52 195
MsG0580028810.01.T01 AT5G37160 34.606 419 214 10 16 396 17 413 1.66e-56 202
MsG0580028810.01.T01 AT4G15570 37.374 297 180 5 519 813 370 662 5.29e-50 189
MsG0580028810.01.T01 AT4G15570 37.374 297 180 5 519 813 370 662 5.29e-50 189
MsG0580028810.01.T01 AT4G15570 37.374 297 180 5 519 813 459 751 8.69e-50 189
MsG0580028810.01.T01 AT4G15570 37.374 297 180 5 519 813 459 751 8.69e-50 189
MsG0580028810.01.T01 AT2G19120 37.618 319 168 10 511 815 742 1043 1.62e-49 190
MsG0580028810.01.T01 AT4G30100 35.802 324 175 9 511 819 905 1210 2.09e-46 181
MsG0580028810.01.T01 AT4G30100 35.802 324 175 9 511 819 905 1210 2.09e-46 181
MsG0580028810.01.T01 AT1G16800 36.213 301 173 8 526 813 1697 1991 1.63e-41 166
MsG0580028810.01.T01 AT1G16800 28.364 275 164 12 38 301 1184 1436 1.84e-13 75.5
MsG0580028810.01.T01 AT1G16800 35.974 303 175 8 526 815 1585 1881 1.66e-41 166
MsG0580028810.01.T01 AT1G16800 28.364 275 164 12 38 301 1072 1324 1.48e-13 75.9
MsG0580028810.01.T01 AT1G16800 35.974 303 175 8 526 815 1627 1923 1.72e-41 166
MsG0580028810.01.T01 AT1G16800 28.364 275 164 12 38 301 1114 1366 1.76e-13 75.5
MsG0580028810.01.T01 AT5G47010 32.222 360 206 13 509 855 618 952 6.94e-37 150
MsG0580028810.01.T01 AT2G03270 32.781 302 170 11 519 806 340 622 3.20e-27 118
MsG0580028810.01.T01 AT5G35970 34.211 304 151 13 519 795 638 919 2.97e-26 116
MsG0580028810.01.T01 AT1G05460 31.778 343 176 13 547 864 542 851 1.58e-24 110
MsG0580028810.01.T01 AT1G05460 31.778 343 176 14 547 864 542 851 3.18e-24 110
MsG0580028810.01.T01 AT2G38770 25.688 545 311 24 278 789 882 1365 7.82e-18 89.7
MsG0580028810.01.T01 AT1G08840 30.566 265 152 9 548 795 1050 1299 1.35e-16 85.5
MsG0580028810.01.T01 AT1G08840 30.566 265 152 9 548 795 1018 1267 1.47e-16 85.5
MsG0580028810.01.T01 AT1G08840 30.566 265 152 9 548 795 1053 1302 1.53e-16 85.5
MsG0580028810.01.T01 AT1G08840 30.566 265 152 9 548 795 1037 1286 1.59e-16 85.5

Find 157 sgRNAs with CRISPR-Local

Find 239 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCTCCTTAACATTTATTATT+TGG 0.087854 5:+86799899 None:intergenic
TGCACTGGCTTCACCTTTGC+TGG 0.195790 5:+86798570 None:intergenic
CCATGCATGGGATTGATTTC+AGG 0.196515 5:+86799731 None:intergenic
ATGCTGATATCAAACTTATA+TGG 0.207233 5:-86799358 MsG0580028810.01.T01:CDS
TTAGTCTCCCATCCGGTATT+TGG 0.236255 5:+86799053 None:intergenic
CTCCTGTAAGTTTCAAAATT+AGG 0.237840 5:+86798687 None:intergenic
AACATACACACAGATTAATT+TGG 0.239194 5:+86797310 None:intergenic
GTAAATGTTCGTTCTGTTGA+TGG 0.259767 5:-86797778 MsG0580028810.01.T01:CDS
TTGGGTGACATTGTGCTATT+TGG 0.264288 5:-86799167 MsG0580028810.01.T01:CDS
TGCTCAAGTTTATGAAATTC+AGG 0.269725 5:-86797845 MsG0580028810.01.T01:CDS
TTGGAACAGAACATTCTTAA+TGG 0.272637 5:+86797435 None:intergenic
TCAAGTTCTATGAAACTAAT+TGG 0.278948 5:-86798594 MsG0580028810.01.T01:CDS
AGATATTGTCTTTGGATATT+AGG 0.279252 5:-86797568 MsG0580028810.01.T01:CDS
TGAGCATGATACATATAGTT+TGG 0.293711 5:-86799186 MsG0580028810.01.T01:CDS
GAATACCAAATACTCCTTAT+AGG 0.300138 5:-86797342 MsG0580028810.01.T01:CDS
ACTCGCCTATAAGGAGTATT+TGG 0.305917 5:+86797337 None:intergenic
TCATAAACTTGAGCATTATA+TGG 0.306286 5:+86797853 None:intergenic
ATAGCAGACCAATGTGAATT+TGG 0.307884 5:-86798333 MsG0580028810.01.T01:CDS
AATATCAATCTTCATGCATT+TGG 0.308115 5:+86799840 None:intergenic
AGAGAAATTGACCTTGATAA+AGG 0.311498 5:+86798019 None:intergenic
ATATCTACTGTGAGATCTAA+TGG 0.320699 5:-86797724 MsG0580028810.01.T01:CDS
GATTTATCTTCAAGCTTGTT+TGG 0.320794 5:-86800153 MsG0580028810.01.T01:CDS
TTTGGTGCCACTCGCCTATA+AGG 0.323203 5:+86797328 None:intergenic
TATAATAAGCATTTCCTTGA+AGG 0.323702 5:-86798159 MsG0580028810.01.T01:CDS
AGCTTGAAACAGCATCTTCT+TGG 0.329857 5:+86799405 None:intergenic
AAGAATACATTTCTCCTTCA+AGG 0.340320 5:+86798145 None:intergenic
ATCTCTCATTTCACTGGAAA+TGG 0.347354 5:-86798880 MsG0580028810.01.T01:CDS
ATGAAAGAAGACCGACTATC+TGG 0.353984 5:+86799470 None:intergenic
CCATTGAAGAAACGGCGTTT+AGG 0.355878 5:-86797385 MsG0580028810.01.T01:CDS
CCTAAACGCCGTTTCTTCAA+TGG 0.364698 5:+86797385 None:intergenic
TGCTGATATCAAACTTATAT+GGG 0.374218 5:-86799357 MsG0580028810.01.T01:CDS
TCATTGCTTTCACACACATT+AGG 0.388248 5:-86799972 MsG0580028810.01.T01:CDS
TTACAACGAATGTTCGTATT+CGG 0.395665 5:-86799759 MsG0580028810.01.T01:CDS
TAGCTTTCTTTCGTGACAAC+AGG 0.396172 5:+86798180 None:intergenic
CATTCGTTGTAATGTTCATA+AGG 0.397925 5:+86799770 None:intergenic
AGTTATTGATGCTAAGAATA+GGG 0.406528 5:-86797500 MsG0580028810.01.T01:CDS
TAATAAACAGTGACTCTGTT+TGG 0.408540 5:-86797531 MsG0580028810.01.T01:CDS
CTGGATTTGCTAAAGTCTCT+TGG 0.410408 5:-86798837 MsG0580028810.01.T01:CDS
GAGCATGATACATATAGTTT+GGG 0.415662 5:-86799185 MsG0580028810.01.T01:CDS
ACATTCTGGATTTCACATAA+AGG 0.420838 5:+86800117 None:intergenic
TGCGAAATTGCAGTATTAGT+TGG 0.420980 5:+86799248 None:intergenic
GCTTGAAACAGCATCTTCTT+GGG 0.426070 5:+86799406 None:intergenic
TAGTTATTGATGCTAAGAAT+AGG 0.429708 5:-86797501 MsG0580028810.01.T01:CDS
GTTGTCTCTCATCTCCGATT+AGG 0.431949 5:+86798463 None:intergenic
AGGTGGCAAGTCGGTTGAAT+AGG 0.434158 5:-86799226 MsG0580028810.01.T01:CDS
GACATAATTAAAACAGTGTT+GGG 0.434780 5:-86799709 MsG0580028810.01.T01:CDS
CTCCGCCGTTGCATCCTAAT+CGG 0.435407 5:-86798477 MsG0580028810.01.T01:CDS
ACGGCGTTTAGGAGGGAAAT+CGG 0.435461 5:-86797374 MsG0580028810.01.T01:CDS
TATCCAAATAATAAATGTTA+AGG 0.435967 5:-86799902 MsG0580028810.01.T01:CDS
ATTCTTCCAGCTGTTGAAGT+TGG 0.437434 5:+86797416 None:intergenic
CATGCATGGGATTGATTTCA+GGG 0.439092 5:+86799732 None:intergenic
TCGGTTGAATAGGTTAGTTA+TGG 0.440947 5:-86799216 MsG0580028810.01.T01:CDS
GTTGCTGACTTAAATGTCTC+TGG 0.443060 5:+86800225 None:intergenic
GAAGACCGACTATCTGGTTC+AGG 0.443616 5:+86799476 None:intergenic
GCCATGGGTAAAGAGCAATT+TGG 0.444307 5:-86798102 MsG0580028810.01.T01:CDS
GGAAATTATAAACCTGTGTC+AGG 0.444557 5:-86800000 MsG0580028810.01.T01:CDS
TGGAGCGCAAGTCAATGTTC+TGG 0.445243 5:+86799268 None:intergenic
AGGATGGAGAAGACAAGAAA+TGG 0.448057 5:-86801189 MsG0580028810.01.T01:CDS
GTTTGAAAGGCTTGTAATGT+TGG 0.453212 5:-86798301 MsG0580028810.01.T01:CDS
GCACTGGCTTCACCTTTGCT+GGG 0.460190 5:+86798571 None:intergenic
TATCTACTGTGAGATCTAAT+GGG 0.465479 5:-86797723 MsG0580028810.01.T01:CDS
CGGCGTTTAGGAGGGAAATC+GGG 0.468144 5:-86797373 MsG0580028810.01.T01:CDS
ATATGGGGACCACCAGGGAC+AGG 0.468887 5:-86799341 MsG0580028810.01.T01:CDS
CGGAGACCGGACAGCTGTAA+TGG 0.478065 5:+86798495 None:intergenic
TCCAGTGAAATGAGAGATGT+TGG 0.490268 5:+86798885 None:intergenic
CTACGGTTGAAGAGTAGAAA+TGG 0.496570 5:-86800024 MsG0580028810.01.T01:CDS
TCTGTTCCAACTTCAACAGC+TGG 0.496640 5:-86797422 MsG0580028810.01.T01:CDS
TTGAGTCGCCATTGAAGAAA+CGG 0.497905 5:-86797393 MsG0580028810.01.T01:CDS
CTTGAATTTGGCTTGCCCGA+TGG 0.500757 5:+86798809 None:intergenic
ATAATTAAAAGCCTTTATCA+AGG 0.501547 5:-86798030 MsG0580028810.01.T01:intron
GCCAACATCTCTCATTTCAC+TGG 0.506432 5:-86798886 MsG0580028810.01.T01:CDS
TTGGACGAAGTATGTTTGAA+AGG 0.506473 5:-86798314 MsG0580028810.01.T01:CDS
GGACATAATTAAAACAGTGT+TGG 0.508418 5:-86799710 MsG0580028810.01.T01:CDS
TTTGTTAGCTGATTTCTCCA+TGG 0.509552 5:+86799001 None:intergenic
AAGTCTCTTGGAATTTCCAT+CGG 0.510727 5:-86798825 MsG0580028810.01.T01:CDS
CGTGATTTCCTGCTTAACAT+AGG 0.510922 5:+86799873 None:intergenic
TGTAAGTTTCAAAATTAGGA+AGG 0.511457 5:+86798691 None:intergenic
ACAGAACATTCTTAATGGCC+CGG 0.513485 5:+86797440 None:intergenic
TCTTCAACCGTAGGACATGA+TGG 0.518552 5:+86800034 None:intergenic
TTTGAAAGGCTTGTAATGTT+GGG 0.519751 5:-86798300 MsG0580028810.01.T01:CDS
GATACAGTTGCTCAAGTCCA+TGG 0.521156 5:-86799018 MsG0580028810.01.T01:CDS
TCCAAATTGCTCTTTACCCA+TGG 0.522272 5:+86798101 None:intergenic
CCGTGCAAAGAGTTCTATGA+TGG 0.524090 5:-86798219 MsG0580028810.01.T01:CDS
TTGTTCTGCCAGTGTTCATG+AGG 0.529789 5:-86797909 MsG0580028810.01.T01:intron
GAATGCTTTGATCCAAATAC+CGG 0.531724 5:-86799065 MsG0580028810.01.T01:CDS
ACCCTCGAGGATGTTCTAAA+CGG 0.533004 5:-86801114 MsG0580028810.01.T01:CDS
AGTCTCTTGGAATTTCCATC+GGG 0.534233 5:-86798824 MsG0580028810.01.T01:CDS
GGAGGCAGCCTATGTTAAGC+AGG 0.535015 5:-86799881 MsG0580028810.01.T01:CDS
ATGAAATTCAGTTCTCATCA+AGG 0.535237 5:-86799131 MsG0580028810.01.T01:CDS
AAACTTATATGGGGACCACC+AGG 0.535882 5:-86799347 MsG0580028810.01.T01:CDS
TAGGATGCAACGGCGGAGAC+CGG 0.537019 5:+86798482 None:intergenic
TACAGTTCCATCATGTCCTA+CGG 0.537820 5:-86800041 MsG0580028810.01.T01:CDS
TTGAAGAAACGGCGTTTAGG+AGG 0.538637 5:-86797382 MsG0580028810.01.T01:CDS
TTGAAACTTACAGGAGAGGT+GGG 0.541117 5:-86798680 MsG0580028810.01.T01:CDS
AACTAATACTGCAATTTCGC+AGG 0.541397 5:-86799246 MsG0580028810.01.T01:CDS
TTATAGATATTGTACTCTCA+TGG 0.541691 5:-86801137 MsG0580028810.01.T01:CDS
ACAATTCCATTACAGCTGTC+CGG 0.546872 5:-86798501 MsG0580028810.01.T01:CDS
TATAACAGTTGAAAGTAAGC+AGG 0.547391 5:+86798768 None:intergenic
ACAAAGAAGAAAGTAAGCAC+AGG 0.548242 5:-86797886 MsG0580028810.01.T01:CDS
TTTGAAACTTACAGGAGAGG+TGG 0.548289 5:-86798681 MsG0580028810.01.T01:CDS
GACAAGAAATGGAAGTGAAG+AGG 0.549821 5:-86801178 MsG0580028810.01.T01:CDS
TTGTTTCCACAATGCTGAAG+AGG 0.550324 5:-86797476 MsG0580028810.01.T01:CDS
CAGAACATTCTTAATGGCCC+GGG 0.551806 5:+86797441 None:intergenic
CGGAAATCTTTACAAAGACA+AGG 0.553644 5:-86801094 MsG0580028810.01.T01:intron
CCATCATAGAACTCTTTGCA+CGG 0.555234 5:+86798219 None:intergenic
AAGTCTGAAGAACATGGTTG+AGG 0.560607 5:-86798070 MsG0580028810.01.T01:CDS
AAAGTGAACTTAGTATGCTA+AGG 0.562963 5:+86798727 None:intergenic
CCAAATAATAAATGTTAAGG+AGG 0.563009 5:-86799899 MsG0580028810.01.T01:CDS
ATGTGGCTATAACAAGGGCT+AGG 0.565046 5:-86797660 MsG0580028810.01.T01:intron
GAACAAATGTGGCTATAACA+AGG 0.569635 5:-86797666 MsG0580028810.01.T01:CDS
TGAAGAAACGGCGTTTAGGA+GGG 0.570826 5:-86797381 MsG0580028810.01.T01:CDS
TCTAATGGGACTGGTGATGT+TGG 0.572936 5:-86797709 MsG0580028810.01.T01:CDS
CACGGGAACAAGCTAATGAA+AGG 0.573877 5:+86798237 None:intergenic
TGGGATCAAGAGAGTTCAAG+TGG 0.574238 5:-86798661 MsG0580028810.01.T01:CDS
CATCATAGAACTCTTTGCAC+GGG 0.575843 5:+86798220 None:intergenic
ATTATTCTTACAATTTGATG+TGG 0.576061 5:+86799685 None:intergenic
GGAAATTAAGCAGTACACTC+GGG 0.578752 5:-86797821 MsG0580028810.01.T01:CDS
TGTGTTTCCTCCAACAATAG+AGG 0.579888 5:+86800180 None:intergenic
GAAACTAATTGGCCCAGCAA+AGG 0.580339 5:-86798583 MsG0580028810.01.T01:CDS
ACCGACTATCTGGTTCAGGC+AGG 0.581478 5:+86799480 None:intergenic
GTAAGTTTCAAAATTAGGAA+GGG 0.582712 5:+86798692 None:intergenic
GACATTGTGCTATTTGGCAA+TGG 0.584625 5:-86799161 MsG0580028810.01.T01:CDS
AACAAATGTGGCTATAACAA+GGG 0.585298 5:-86797665 MsG0580028810.01.T01:CDS
GTGAAGAGGATCTTAAACTC+GGG 0.588118 5:-86801164 MsG0580028810.01.T01:CDS
TTACCGTGTAGAGTATCTCA+TGG 0.588285 5:-86799087 MsG0580028810.01.T01:CDS
TAGCAAGTTAGTCTCCCATC+CGG 0.589833 5:+86799046 None:intergenic
AGGAAATTAAGCAGTACACT+CGG 0.591103 5:-86797822 MsG0580028810.01.T01:CDS
CATTTCTACTCTTCAACCGT+AGG 0.592886 5:+86800025 None:intergenic
TGCTATTTGGCAATGGCAAG+AGG 0.595292 5:-86799154 MsG0580028810.01.T01:CDS
TCCGTTTAGAACATCCTCGA+GGG 0.598372 5:+86801113 None:intergenic
TATGGGGACCACCAGGGACA+GGG 0.599903 5:-86799340 MsG0580028810.01.T01:CDS
ACTGTGAGATCTAATGGGAC+TGG 0.605357 5:-86797718 MsG0580028810.01.T01:CDS
GCCTGCCTGAACCAGATAGT+CGG 0.606378 5:-86799481 MsG0580028810.01.T01:CDS
CTATGTTAAGCAGGAAATCA+CGG 0.607531 5:-86799872 MsG0580028810.01.T01:CDS
CATCTCCGATTAGGATGCAA+CGG 0.615096 5:+86798472 None:intergenic
GCTTTGATCCAAATACCGGA+TGG 0.615373 5:-86799061 MsG0580028810.01.T01:CDS
CTTTGATCCAAATACCGGAT+GGG 0.615509 5:-86799060 MsG0580028810.01.T01:CDS
AGTGAAGAGGATCTTAAACT+CGG 0.615633 5:-86801165 MsG0580028810.01.T01:CDS
CCTGAAATCAATCCCATGCA+TGG 0.618366 5:-86799731 MsG0580028810.01.T01:CDS
TTGATATTAAATATGACTTG+TGG 0.621370 5:-86799825 MsG0580028810.01.T01:CDS
TACTTCGTCCAAATTCACAT+TGG 0.633182 5:+86798325 None:intergenic
GGTAAAGAGCAATTTGGACA+TGG 0.633461 5:-86798096 MsG0580028810.01.T01:CDS
CAATTTCGCAGGTGGCAAGT+CGG 0.635677 5:-86799235 MsG0580028810.01.T01:CDS
TAATACTGCAATTTCGCAGG+TGG 0.636270 5:-86799243 MsG0580028810.01.T01:CDS
CGGTTGAAGAGTAGAAATGG+TGG 0.637779 5:-86800021 MsG0580028810.01.T01:CDS
AAATAGACAAAGAACAAATG+TGG 0.638430 5:-86797677 MsG0580028810.01.T01:CDS
AACTTATATGGGGACCACCA+GGG 0.643082 5:-86799346 MsG0580028810.01.T01:CDS
GCTGATATCAAACTTATATG+GGG 0.644417 5:-86799356 MsG0580028810.01.T01:CDS
TGGACAAAGTCTGAAGAACA+TGG 0.648510 5:-86798076 MsG0580028810.01.T01:CDS
GCAATGAGATCTCCTGACAC+AGG 0.658736 5:+86799988 None:intergenic
TCAAGTTTATGAAATTCAGG+AGG 0.663310 5:-86797842 MsG0580028810.01.T01:CDS
AAATACTCCTTATAGGCGAG+TGG 0.670521 5:-86797335 MsG0580028810.01.T01:CDS
TTCCGTTTAGAACATCCTCG+AGG 0.674084 5:+86801112 None:intergenic
CTCCGATTAGGATGCAACGG+CGG 0.683553 5:+86798475 None:intergenic
TGTACTCTCATGGACCCTCG+AGG 0.712940 5:-86801127 MsG0580028810.01.T01:CDS
AATCAAGAAAGAATTTGACA+AGG 0.724929 5:+86799108 None:intergenic
ATTCCATGAGATACTCTACA+CGG 0.745836 5:+86799084 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATCCAAATAATAAATGTTA+AGG - Chr5:86798608-86798627 MsG0580028810.01.T01:CDS 15.0%
!! TTTAAATTTGCCAAAAAAAT+TGG + Chr5:86797614-86797633 None:intergenic 15.0%
!!! ATTAATTCAACCAATTTTTT+TGG - Chr5:86797601-86797620 MsG0580028810.01.T01:intron 15.0%
!!! ATTAATTTTTTCTGATACAT+CGG + Chr5:86797587-86797606 None:intergenic 15.0%
!! ATAATTAAAAGCCTTTATCA+AGG - Chr5:86800480-86800499 MsG0580028810.01.T01:intron 20.0%
!! ATTATTCTTACAATTTGATG+TGG + Chr5:86798828-86798847 None:intergenic 20.0%
!! ATTCCTTGAAATTATTAAGA+AGG + Chr5:86798116-86798135 None:intergenic 20.0%
!! TTCATTTAATGTATAGCATA+CGG - Chr5:86798872-86798891 MsG0580028810.01.T01:CDS 20.0%
!! TTGATATTAAATATGACTTG+TGG - Chr5:86798685-86798704 MsG0580028810.01.T01:CDS 20.0%
!!! TTTTTGTATGTGTTCAATAT+AGG - Chr5:86798135-86798154 MsG0580028810.01.T01:CDS 20.0%
! AAATAGACAAAGAACAAATG+TGG - Chr5:86800833-86800852 MsG0580028810.01.T01:intron 25.0%
! AATATCAATCTTCATGCATT+TGG + Chr5:86798673-86798692 None:intergenic 25.0%
! AATCAAGAAAGAATTTGACA+AGG + Chr5:86799405-86799424 None:intergenic 25.0%
! AGATATTGTCTTTGGATATT+AGG - Chr5:86800942-86800961 MsG0580028810.01.T01:intron 25.0%
! AGTTATTGATGCTAAGAATA+GGG - Chr5:86801010-86801029 MsG0580028810.01.T01:intron 25.0%
! ATCTTTGCAACTACTAAAAA+GGG + Chr5:86797921-86797940 None:intergenic 25.0%
! ATGCTGATATCAAACTTATA+TGG - Chr5:86799152-86799171 MsG0580028810.01.T01:CDS 25.0%
! CAACCTTCTTAATAATTTCA+AGG - Chr5:86798110-86798129 MsG0580028810.01.T01:CDS 25.0%
! CCAAATAATAAATGTTAAGG+AGG - Chr5:86798611-86798630 MsG0580028810.01.T01:CDS 25.0%
! CCTCCTTAACATTTATTATT+TGG + Chr5:86798614-86798633 None:intergenic 25.0%
! GACATAATTAAAACAGTGTT+GGG - Chr5:86798801-86798820 MsG0580028810.01.T01:CDS 25.0%
! GTAAGTTTCAAAATTAGGAA+GGG + Chr5:86799821-86799840 None:intergenic 25.0%
! GTATGCTATACATTAAATGA+AGG + Chr5:86798873-86798892 None:intergenic 25.0%
! TAAATGCATAATTCATACTG+AGG + Chr5:86800559-86800578 None:intergenic 25.0%
! TAGTTATTGATGCTAAGAAT+AGG - Chr5:86801009-86801028 MsG0580028810.01.T01:intron 25.0%
! TATAATAAGCATTTCCTTGA+AGG - Chr5:86800351-86800370 MsG0580028810.01.T01:intron 25.0%
! TCAAGTTCTATGAAACTAAT+TGG - Chr5:86799916-86799935 MsG0580028810.01.T01:CDS 25.0%
! TCAATTACTAAAAATTGCAC+TGG + Chr5:86799958-86799977 None:intergenic 25.0%
! TCATAAACTTGAGCATTATA+TGG + Chr5:86800660-86800679 None:intergenic 25.0%
! TGCTGATATCAAACTTATAT+GGG - Chr5:86799153-86799172 MsG0580028810.01.T01:CDS 25.0%
! TGTAAGTTTCAAAATTAGGA+AGG + Chr5:86799822-86799841 None:intergenic 25.0%
! TTATAGATATTGTACTCTCA+TGG - Chr5:86797373-86797392 MsG0580028810.01.T01:CDS 25.0%
!! AAAAGTTTAGACATCTTTTC+TGG + Chr5:86798162-86798181 None:intergenic 25.0%
!! AAAGTTTAGACATCTTTTCT+GGG + Chr5:86798161-86798180 None:intergenic 25.0%
!! AGAATAATCTTTTGATCTGA+AGG - Chr5:86798840-86798859 MsG0580028810.01.T01:CDS 25.0%
!! TCTTTTATTAACATAGCCAT+GGG - Chr5:86800393-86800412 MsG0580028810.01.T01:intron 25.0%
!! TTCAAGTCATTAAAGCTTTT+AGG + Chr5:86798564-86798583 None:intergenic 25.0%
!! TTCATCTCTTTTCTTGAATT+TGG + Chr5:86799716-86799735 None:intergenic 25.0%
!! TTCTTTTATTAACATAGCCA+TGG - Chr5:86800392-86800411 MsG0580028810.01.T01:intron 25.0%
!!! AATACAAAAAAGCACTAAAC+AGG + Chr5:86798983-86799002 None:intergenic 25.0%
!!! ATGAATTGATTTTCTGTTTC+AGG + Chr5:86798450-86798469 None:intergenic 25.0%
!!! CATCGGTTGATAAAAAAAAA+TGG + Chr5:86797570-86797589 None:intergenic 25.0%
!!! TTCCTAATTTTGAAACTTAC+AGG - Chr5:86799821-86799840 MsG0580028810.01.T01:CDS 25.0%
!!! TTTTAATTATGTCCATGCAT+GGG + Chr5:86798794-86798813 None:intergenic 25.0%
AAAATGATCCTACAAAGACA+AGG - Chr5:86797632-86797651 MsG0580028810.01.T01:intron 30.0%
AAAGTGAACTTAGTATGCTA+AGG + Chr5:86799786-86799805 None:intergenic 30.0%
AACAAATGTGGCTATAACAA+GGG - Chr5:86800845-86800864 MsG0580028810.01.T01:intron 30.0%
AAGAATACATTTCTCCTTCA+AGG + Chr5:86800368-86800387 None:intergenic 30.0%
AAGCCTGAAAAAAGATCTAT+CGG + Chr5:86798066-86798085 None:intergenic 30.0%
AATATGTAACCCTGACATTA+AGG - Chr5:86797481-86797500 MsG0580028810.01.T01:CDS 30.0%
ACATTCTGGATTTCACATAA+AGG + Chr5:86798396-86798415 None:intergenic 30.0%
AGAGAAATTGACCTTGATAA+AGG + Chr5:86800494-86800513 None:intergenic 30.0%
ATATCTACTGTGAGATCTAA+TGG - Chr5:86800786-86800805 MsG0580028810.01.T01:intron 30.0%
ATGAAATTCAGTTCTCATCA+AGG - Chr5:86799379-86799398 MsG0580028810.01.T01:CDS 30.0%
ATTAAGAAGGTTGCTCTATA+GGG + Chr5:86798103-86798122 None:intergenic 30.0%
ATTTAATGTATAGCATACGG+TGG - Chr5:86798875-86798894 MsG0580028810.01.T01:CDS 30.0%
CATCTTTGCAACTACTAAAA+AGG + Chr5:86797922-86797941 None:intergenic 30.0%
CATTCGTTGTAATGTTCATA+AGG + Chr5:86798743-86798762 None:intergenic 30.0%
CTCAATGAGAATCTTAAACT+CGG - Chr5:86797660-86797679 MsG0580028810.01.T01:intron 30.0%
CTCCTGTAAGTTTCAAAATT+AGG + Chr5:86799826-86799845 None:intergenic 30.0%
GAAAAAAATGTTTCAAGCTC+TGG - Chr5:86799654-86799673 MsG0580028810.01.T01:intron 30.0%
GAATACCAAATACTCCTTAT+AGG - Chr5:86801168-86801187 MsG0580028810.01.T01:CDS 30.0%
GAGAAAATCTAACAATGAAG+TGG + Chr5:86797899-86797918 None:intergenic 30.0%
GAGCATGATACATATAGTTT+GGG - Chr5:86799325-86799344 MsG0580028810.01.T01:CDS 30.0%
GCTGATATCAAACTTATATG+GGG - Chr5:86799154-86799173 MsG0580028810.01.T01:CDS 30.0%
GGACATAATTAAAACAGTGT+TGG - Chr5:86798800-86798819 MsG0580028810.01.T01:CDS 30.0%
TAATAAACAGTGACTCTGTT+TGG - Chr5:86800979-86800998 MsG0580028810.01.T01:intron 30.0%
TATAACAGTTGAAAGTAAGC+AGG + Chr5:86799745-86799764 None:intergenic 30.0%
TATCTACTGTGAGATCTAAT+GGG - Chr5:86800787-86800806 MsG0580028810.01.T01:intron 30.0%
TATTAAGAAGGTTGCTCTAT+AGG + Chr5:86798104-86798123 None:intergenic 30.0%
TCAAGTTTATGAAATTCAGG+AGG - Chr5:86800668-86800687 MsG0580028810.01.T01:intron 30.0%
TCAATGAGAATCTTAAACTC+GGG - Chr5:86797661-86797680 MsG0580028810.01.T01:CDS 30.0%
TGAGAATCTTTACAAAGACA+AGG - Chr5:86797731-86797750 MsG0580028810.01.T01:CDS 30.0%
TGAGCATGATACATATAGTT+TGG - Chr5:86799324-86799343 MsG0580028810.01.T01:CDS 30.0%
TGCTCAAGTTTATGAAATTC+AGG - Chr5:86800665-86800684 MsG0580028810.01.T01:intron 30.0%
TTACAACGAATGTTCGTATT+CGG - Chr5:86798751-86798770 MsG0580028810.01.T01:CDS 30.0%
TTATAGATACTGTACTCTCT+TGG - Chr5:86797688-86797707 MsG0580028810.01.T01:CDS 30.0%
TTCATATTAATTGACCATGC+AGG + Chr5:86798936-86798955 None:intergenic 30.0%
TTGGAACAGAACATTCTTAA+TGG + Chr5:86801078-86801097 None:intergenic 30.0%
TTTGAAAGGCTTGTAATGTT+GGG - Chr5:86800210-86800229 MsG0580028810.01.T01:CDS 30.0%
! AACTTTTATGCTGTATTGCA+TGG - Chr5:86800517-86800536 MsG0580028810.01.T01:intron 30.0%
! CTCTTTTATTCCTCTATTGT+TGG - Chr5:86798320-86798339 MsG0580028810.01.T01:CDS 30.0%
! GATTTATCTTCAAGCTTGTT+TGG - Chr5:86798357-86798376 MsG0580028810.01.T01:intron 30.0%
! TCACAATGAAAAAGTGTACT+TGG - Chr5:86797778-86797797 MsG0580028810.01.T01:CDS 30.0%
! TGATTTTCTGTTTCAGGAAT+GGG + Chr5:86798444-86798463 None:intergenic 30.0%
! TGTGAAAATTGTTTTCTCTC+AGG - Chr5:86798251-86798270 MsG0580028810.01.T01:CDS 30.0%
! TTAGTAAAAAGCAAGGTACT+CGG - Chr5:86800078-86800097 MsG0580028810.01.T01:CDS 30.0%
! TTGATTTTCTGTTTCAGGAA+TGG + Chr5:86798445-86798464 None:intergenic 30.0%
! TTTTATTCCTCTATTGTTGG+AGG - Chr5:86798323-86798342 MsG0580028810.01.T01:CDS 30.0%
! TTTTGTGCAGATATTGTCTT+TGG - Chr5:86800934-86800953 MsG0580028810.01.T01:intron 30.0%
!! TTCATTGTGAGTGTTGAAAA+GGG + Chr5:86797768-86797787 None:intergenic 30.0%
!! TTTCATTGTGAGTGTTGAAA+AGG + Chr5:86797769-86797788 None:intergenic 30.0%
!!! AATTTTGAAACTTACAGGAG+AGG - Chr5:86799826-86799845 MsG0580028810.01.T01:CDS 30.0%
!!! CTATGCTTTTTTCAACATTC+TGG + Chr5:86798410-86798429 None:intergenic 30.0%
!!! GTTTTAATTATGTCCATGCA+TGG + Chr5:86798795-86798814 None:intergenic 30.0%
AACTAATACTGCAATTTCGC+AGG - Chr5:86799264-86799283 MsG0580028810.01.T01:CDS 35.0%
AAGTCTCTTGGAATTTCCAT+CGG - Chr5:86799685-86799704 MsG0580028810.01.T01:intron 35.0%
ACAAAGAAGAAAGTAAGCAC+AGG - Chr5:86800624-86800643 MsG0580028810.01.T01:intron 35.0%
AGGAAATTAAGCAGTACACT+CGG - Chr5:86800688-86800707 MsG0580028810.01.T01:intron 35.0%
AGTGAAGAGGATCTTAAACT+CGG - Chr5:86797345-86797364 MsG0580028810.01.T01:CDS 35.0%
ATAGCAGACCAATGTGAATT+TGG - Chr5:86800177-86800196 MsG0580028810.01.T01:CDS 35.0%
ATCTCTCATTTCACTGGAAA+TGG - Chr5:86799630-86799649 MsG0580028810.01.T01:intron 35.0%
ATTCCATGAGATACTCTACA+CGG + Chr5:86799429-86799448 None:intergenic 35.0%
CGGAAATCTTTACAAAGACA+AGG - Chr5:86797416-86797435 MsG0580028810.01.T01:CDS 35.0%
CTATGTTAAGCAGGAAATCA+CGG - Chr5:86798638-86798657 MsG0580028810.01.T01:CDS 35.0%
GAACAAATGTGGCTATAACA+AGG - Chr5:86800844-86800863 MsG0580028810.01.T01:intron 35.0%
GAATGCTTTGATCCAAATAC+CGG - Chr5:86799445-86799464 MsG0580028810.01.T01:CDS 35.0%
GGAAATTATAAACCTGTGTC+AGG - Chr5:86798510-86798529 MsG0580028810.01.T01:CDS 35.0%
GTAAATGTTCGTTCTGTTGA+TGG - Chr5:86800732-86800751 MsG0580028810.01.T01:intron 35.0%
GTTATACGACCTTAATGTCA+GGG + Chr5:86797493-86797512 None:intergenic 35.0%
GTTTGAAAGGCTTGTAATGT+TGG - Chr5:86800209-86800228 MsG0580028810.01.T01:CDS 35.0%
TACTTCGTCCAAATTCACAT+TGG + Chr5:86800188-86800207 None:intergenic 35.0%
TCATTGCTTTCACACACATT+AGG - Chr5:86798538-86798557 MsG0580028810.01.T01:CDS 35.0%
TCCTGCATTAGTAAAAAGCA+AGG - Chr5:86800071-86800090 MsG0580028810.01.T01:CDS 35.0%
TGCGAAATTGCAGTATTAGT+TGG + Chr5:86799265-86799284 None:intergenic 35.0%
TGCTGAAGAGGACAAAAAAT+TGG - Chr5:86801046-86801065 MsG0580028810.01.T01:intron 35.0%
TGTTATACGACCTTAATGTC+AGG + Chr5:86797494-86797513 None:intergenic 35.0%
TTGGACGAAGTATGTTTGAA+AGG - Chr5:86800196-86800215 MsG0580028810.01.T01:CDS 35.0%
! TCGGTTGAATAGGTTAGTTA+TGG - Chr5:86799294-86799313 MsG0580028810.01.T01:CDS 35.0%
! TTTGTTAGCTGATTTCTCCA+TGG + Chr5:86799512-86799531 None:intergenic 35.0%
!! ATCGGAAGATAGCTTTAGAT+GGG + Chr5:86798048-86798067 None:intergenic 35.0%
!! TATCGGAAGATAGCTTTAGA+TGG + Chr5:86798049-86798068 None:intergenic 35.0%
!! TGATGTTTACTTTTCCTGCA+TGG - Chr5:86798919-86798938 MsG0580028810.01.T01:CDS 35.0%
!! TTTTCAGGCTTTAGCAACTT+GGG - Chr5:86798075-86798094 MsG0580028810.01.T01:CDS 35.0%
!!! ACCTTGCTTTTTACTAATGC+AGG + Chr5:86800075-86800094 None:intergenic 35.0%
!!! CTTCCGATAGATCTTTTTTC+AGG - Chr5:86798060-86798079 MsG0580028810.01.T01:CDS 35.0%
!!! TTTTTCAGGCTTTAGCAACT+TGG - Chr5:86798074-86798093 MsG0580028810.01.T01:CDS 35.0%
AAATACTCCTTATAGGCGAG+TGG - Chr5:86801175-86801194 MsG0580028810.01.T01:CDS 40.0%
AAGAGGACAAAAAATTGGCC+CGG - Chr5:86801051-86801070 MsG0580028810.01.T01:intron 40.0%
AAGTCTGAAGAACATGGTTG+AGG - Chr5:86800440-86800459 MsG0580028810.01.T01:intron 40.0%
ACAATTCCATTACAGCTGTC+CGG - Chr5:86800009-86800028 MsG0580028810.01.T01:CDS 40.0%
ACAGAACATTCTTAATGGCC+CGG + Chr5:86801073-86801092 None:intergenic 40.0%
AGCTTGAAACAGCATCTTCT+TGG + Chr5:86799108-86799127 None:intergenic 40.0%
AGTCTCTTGGAATTTCCATC+GGG - Chr5:86799686-86799705 MsG0580028810.01.T01:intron 40.0%
ATGAAAGAAGACCGACTATC+TGG + Chr5:86799043-86799062 None:intergenic 40.0%
ATTCTTCCAGCTGTTGAAGT+TGG + Chr5:86801097-86801116 None:intergenic 40.0%
CATACTGAGGCGTAAGATTT+CGG + Chr5:86800546-86800565 None:intergenic 40.0%
CATCATAGAACTCTTTGCAC+GGG + Chr5:86800293-86800312 None:intergenic 40.0%
CATTTCTACTCTTCAACCGT+AGG + Chr5:86798488-86798507 None:intergenic 40.0%
CCATCATAGAACTCTTTGCA+CGG + Chr5:86800294-86800313 None:intergenic 40.0%
CGTAAGAACATGTGAGAATG+TGG - Chr5:86797514-86797533 MsG0580028810.01.T01:CDS 40.0%
CGTGATTTCCTGCTTAACAT+AGG + Chr5:86798640-86798659 None:intergenic 40.0%
CTACGGTTGAAGAGTAGAAA+TGG - Chr5:86798486-86798505 MsG0580028810.01.T01:CDS 40.0%
CTCATTGAGAACATCCTCTA+GGG + Chr5:86797715-86797734 None:intergenic 40.0%
CTTTGATCCAAATACCGGAT+GGG - Chr5:86799450-86799469 MsG0580028810.01.T01:CDS 40.0%
GACAAGAAATGGAAGTGAAG+AGG - Chr5:86797332-86797351 MsG0580028810.01.T01:CDS 40.0%
GAGAACATCCTTGTCTTTGT+AGG + Chr5:86797643-86797662 None:intergenic 40.0%
GCTTGAAACAGCATCTTCTT+GGG + Chr5:86799107-86799126 None:intergenic 40.0%
GGAAATTAAGCAGTACACTC+GGG - Chr5:86800689-86800708 MsG0580028810.01.T01:intron 40.0%
GGTAAAGAGCAATTTGGACA+TGG - Chr5:86800414-86800433 MsG0580028810.01.T01:intron 40.0%
GTGAAGAGGATCTTAAACTC+GGG - Chr5:86797346-86797365 MsG0580028810.01.T01:CDS 40.0%
TAATACTGCAATTTCGCAGG+TGG - Chr5:86799267-86799286 MsG0580028810.01.T01:CDS 40.0%
TACAGTTCCATCATGTCCTA+CGG - Chr5:86798469-86798488 MsG0580028810.01.T01:CDS 40.0%
TAGCTTTCTTTCGTGACAAC+AGG + Chr5:86800333-86800352 None:intergenic 40.0%
TATCTCCTGAGCAAACATGA+GGG + Chr5:86798005-86798024 None:intergenic 40.0%
TCCAAATTGCTCTTTACCCA+TGG + Chr5:86800412-86800431 None:intergenic 40.0%
TCCAGTGAAATGAGAGATGT+TGG + Chr5:86799628-86799647 None:intergenic 40.0%
TCTCATTGAGAACATCCTCT+AGG + Chr5:86797716-86797735 None:intergenic 40.0%
TGGACAAAGTCTGAAGAACA+TGG - Chr5:86800434-86800453 MsG0580028810.01.T01:intron 40.0%
TGTGTTTCCTCCAACAATAG+AGG + Chr5:86798333-86798352 None:intergenic 40.0%
TTCTTTGTCCTCATGAACAC+TGG + Chr5:86800612-86800631 None:intergenic 40.0%
TTGAAACTTACAGGAGAGGT+GGG - Chr5:86799830-86799849 MsG0580028810.01.T01:CDS 40.0%
TTGAGTCGCCATTGAAGAAA+CGG - Chr5:86801117-86801136 MsG0580028810.01.T01:CDS 40.0%
TTGTTTCCACAATGCTGAAG+AGG - Chr5:86801034-86801053 MsG0580028810.01.T01:intron 40.0%
! CATGCATGGGATTGATTTCA+GGG + Chr5:86798781-86798800 None:intergenic 40.0%
! TTACCGTGTAGAGTATCTCA+TGG - Chr5:86799423-86799442 MsG0580028810.01.T01:CDS 40.0%
! TTGGGTGACATTGTGCTATT+TGG - Chr5:86799343-86799362 MsG0580028810.01.T01:CDS 40.0%
! TTTGAAACTTACAGGAGAGG+TGG - Chr5:86799829-86799848 MsG0580028810.01.T01:CDS 40.0%
! TTTTGTCCTCTTCAGCATTG+TGG + Chr5:86801043-86801062 None:intergenic 40.0%
!! ACTCGCCTATAAGGAGTATT+TGG + Chr5:86801176-86801195 None:intergenic 40.0%
!! CTGGATTTGCTAAAGTCTCT+TGG - Chr5:86799673-86799692 MsG0580028810.01.T01:intron 40.0%
!! GACATTGTGCTATTTGGCAA+TGG - Chr5:86799349-86799368 MsG0580028810.01.T01:CDS 40.0%
!! GTTGCTGACTTAAATGTCTC+TGG + Chr5:86798288-86798307 None:intergenic 40.0%
!! TCGGAAGATAGCTTTAGATG+GGG + Chr5:86798047-86798066 None:intergenic 40.0%
!!! CGTTCTGTTGATGGTTTTCA+AGG - Chr5:86800741-86800760 MsG0580028810.01.T01:intron 40.0%
!!! TCTGTTGATGGTTTTCAAGG+CGG - Chr5:86800744-86800763 MsG0580028810.01.T01:intron 40.0%
AAACTTATATGGGGACCACC+AGG - Chr5:86799163-86799182 MsG0580028810.01.T01:CDS 45.0%
AACTTATATGGGGACCACCA+GGG - Chr5:86799164-86799183 MsG0580028810.01.T01:CDS 45.0%
ACTGTGAGATCTAATGGGAC+TGG - Chr5:86800792-86800811 MsG0580028810.01.T01:intron 45.0%
AGAGGACAAAAAATTGGCCC+GGG - Chr5:86801052-86801071 MsG0580028810.01.T01:intron 45.0%
ATCTCCTGAGCAAACATGAG+GGG + Chr5:86798004-86798023 None:intergenic 45.0%
ATGTGGCTATAACAAGGGCT+AGG - Chr5:86800850-86800869 MsG0580028810.01.T01:intron 45.0%
CACGGGAACAAGCTAATGAA+AGG + Chr5:86800276-86800295 None:intergenic 45.0%
CAGAACATTCTTAATGGCCC+GGG + Chr5:86801072-86801091 None:intergenic 45.0%
CATCTCCGATTAGGATGCAA+CGG + Chr5:86800041-86800060 None:intergenic 45.0%
CCATTGAAGAAACGGCGTTT+AGG - Chr5:86801125-86801144 MsG0580028810.01.T01:CDS 45.0%
CCGTGCAAAGAGTTCTATGA+TGG - Chr5:86800291-86800310 MsG0580028810.01.T01:intron 45.0%
CCTAAACGCCGTTTCTTCAA+TGG + Chr5:86801128-86801147 None:intergenic 45.0%
CCTGAAATCAATCCCATGCA+TGG - Chr5:86798779-86798798 MsG0580028810.01.T01:CDS 45.0%
CGGTTGAAGAGTAGAAATGG+TGG - Chr5:86798489-86798508 MsG0580028810.01.T01:CDS 45.0%
CTATCTCCTGAGCAAACATG+AGG + Chr5:86798006-86798025 None:intergenic 45.0%
GAAACTAATTGGCCCAGCAA+AGG - Chr5:86799927-86799946 MsG0580028810.01.T01:CDS 45.0%
GATACAGTTGCTCAAGTCCA+TGG - Chr5:86799492-86799511 MsG0580028810.01.T01:CDS 45.0%
GCCAACATCTCTCATTTCAC+TGG - Chr5:86799624-86799643 MsG0580028810.01.T01:intron 45.0%
GCCATGGGTAAAGAGCAATT+TGG - Chr5:86800408-86800427 MsG0580028810.01.T01:intron 45.0%
GCTTTGATCCAAATACCGGA+TGG - Chr5:86799449-86799468 MsG0580028810.01.T01:CDS 45.0%
GTTGTCTCTCATCTCCGATT+AGG + Chr5:86800050-86800069 None:intergenic 45.0%
TCTGTTCCAACTTCAACAGC+TGG - Chr5:86801088-86801107 MsG0580028810.01.T01:intron 45.0%
TCTTCAACCGTAGGACATGA+TGG + Chr5:86798479-86798498 None:intergenic 45.0%
TGAAGAAACGGCGTTTAGGA+GGG - Chr5:86801129-86801148 MsG0580028810.01.T01:CDS 45.0%
TGGGATCAAGAGAGTTCAAG+TGG - Chr5:86799849-86799868 MsG0580028810.01.T01:CDS 45.0%
TTAGTCTCCCATCCGGTATT+TGG + Chr5:86799460-86799479 None:intergenic 45.0%
TTGAAGAAACGGCGTTTAGG+AGG - Chr5:86801128-86801147 MsG0580028810.01.T01:CDS 45.0%
TTGTTCTGCCAGTGTTCATG+AGG - Chr5:86800601-86800620 MsG0580028810.01.T01:intron 45.0%
! ACCCTCGAGGATGTTCTAAA+CGG - Chr5:86797396-86797415 MsG0580028810.01.T01:CDS 45.0%
! CCATGCATGGGATTGATTTC+AGG + Chr5:86798782-86798801 None:intergenic 45.0%
! TAGCAAGTTAGTCTCCCATC+CGG + Chr5:86799467-86799486 None:intergenic 45.0%
! TCCGTTTAGAACATCCTCGA+GGG + Chr5:86797400-86797419 None:intergenic 45.0%
! TCTAATGGGACTGGTGATGT+TGG - Chr5:86800801-86800820 MsG0580028810.01.T01:intron 45.0%
! TGCTATTTGGCAATGGCAAG+AGG - Chr5:86799356-86799375 MsG0580028810.01.T01:CDS 45.0%
! TTCCGTTTAGAACATCCTCG+AGG + Chr5:86797401-86797420 None:intergenic 45.0%
!!! CTGTTGATGGTTTTCAAGGC+GGG - Chr5:86800745-86800764 MsG0580028810.01.T01:intron 45.0%
!!! TGTTGATGGTTTTCAAGGCG+GGG - Chr5:86800746-86800765 MsG0580028810.01.T01:intron 45.0%
ACGGCGTTTAGGAGGGAAAT+CGG - Chr5:86801136-86801155 MsG0580028810.01.T01:CDS 50.0%
AGGTGGCAAGTCGGTTGAAT+AGG - Chr5:86799284-86799303 MsG0580028810.01.T01:CDS 50.0%
CAATTTCGCAGGTGGCAAGT+CGG - Chr5:86799275-86799294 MsG0580028810.01.T01:CDS 50.0%
GCAATGAGATCTCCTGACAC+AGG + Chr5:86798525-86798544 None:intergenic 50.0%
TAGTCCCCTCATGTTTGCTC+AGG - Chr5:86797997-86798016 MsG0580028810.01.T01:intron 50.0%
TGGAGCGCAAGTCAATGTTC+TGG + Chr5:86799245-86799264 None:intergenic 50.0%
TGTACTCTCTTGGACCCTAG+AGG - Chr5:86797698-86797717 MsG0580028810.01.T01:CDS 50.0%
! GAAGACCGACTATCTGGTTC+AGG + Chr5:86799037-86799056 None:intergenic 50.0%
!! CTTGAATTTGGCTTGCCCGA+TGG + Chr5:86799704-86799723 None:intergenic 50.0%
!! GTCTTAGTTTTCCCTGTCCC+TGG + Chr5:86799184-86799203 None:intergenic 50.0%
!! TTAGTTTTCCCTGTCCCTGG+TGG + Chr5:86799181-86799200 None:intergenic 50.0%
!! TTTGGTGCCACTCGCCTATA+AGG + Chr5:86801185-86801204 None:intergenic 50.0%
CGGCGTTTAGGAGGGAAATC+GGG - Chr5:86801137-86801156 MsG0580028810.01.T01:CDS 55.0%
CTCCGATTAGGATGCAACGG+CGG + Chr5:86800038-86800057 None:intergenic 55.0%
CTCCGCCGTTGCATCCTAAT+CGG - Chr5:86800033-86800052 MsG0580028810.01.T01:CDS 55.0%
GCCTGCCTGAACCAGATAGT+CGG - Chr5:86799029-86799048 MsG0580028810.01.T01:CDS 55.0%
GGAGGCAGCCTATGTTAAGC+AGG - Chr5:86798629-86798648 MsG0580028810.01.T01:CDS 55.0%
TGTACTCTCATGGACCCTCG+AGG - Chr5:86797383-86797402 MsG0580028810.01.T01:CDS 55.0%
! ACCGACTATCTGGTTCAGGC+AGG + Chr5:86799033-86799052 None:intergenic 55.0%
!! GCACTGGCTTCACCTTTGCT+GGG + Chr5:86799942-86799961 None:intergenic 55.0%
!! TGATGGTTTTCAAGGCGGGG+AGG - Chr5:86800749-86800768 MsG0580028810.01.T01:intron 55.0%
!! TGCACTGGCTTCACCTTTGC+TGG + Chr5:86799943-86799962 None:intergenic 55.0%
ATATGGGGACCACCAGGGAC+AGG - Chr5:86799169-86799188 MsG0580028810.01.T01:CDS 60.0%
CGGAGACCGGACAGCTGTAA+TGG + Chr5:86800018-86800037 None:intergenic 60.0%
TAGGATGCAACGGCGGAGAC+CGG + Chr5:86800031-86800050 None:intergenic 60.0%
TATGGGGACCACCAGGGACA+GGG - Chr5:86799170-86799189 MsG0580028810.01.T01:CDS 60.0%
Chromosome Type Strat End Strand Name
Chr5 gene 86797324 86801208 86797324 ID=MsG0580028810.01;Name=MsG0580028810.01
Chr5 mRNA 86797324 86801208 86797324 ID=MsG0580028810.01.T01;Parent=MsG0580028810.01;Name=MsG0580028810.01.T01;_AED=0.31;_eAED=0.31;_QI=0|0|0|1|1|1|6|0|870
Chr5 exon 86801095 86801208 86801095 ID=MsG0580028810.01.T01:exon:44604;Parent=MsG0580028810.01.T01
Chr5 exon 86799696 86800259 86799696 ID=MsG0580028810.01.T01:exon:44603;Parent=MsG0580028810.01.T01
Chr5 exon 86798440 86799525 86798440 ID=MsG0580028810.01.T01:exon:44602;Parent=MsG0580028810.01.T01
Chr5 exon 86798031 86798355 86798031 ID=MsG0580028810.01.T01:exon:44601;Parent=MsG0580028810.01.T01
Chr5 exon 86797661 86797919 86797661 ID=MsG0580028810.01.T01:exon:44600;Parent=MsG0580028810.01.T01
Chr5 exon 86797324 86797588 86797324 ID=MsG0580028810.01.T01:exon:44599;Parent=MsG0580028810.01.T01
Chr5 CDS 86801095 86801208 86801095 ID=MsG0580028810.01.T01:cds;Parent=MsG0580028810.01.T01
Chr5 CDS 86799696 86800259 86799696 ID=MsG0580028810.01.T01:cds;Parent=MsG0580028810.01.T01
Chr5 CDS 86798440 86799525 86798440 ID=MsG0580028810.01.T01:cds;Parent=MsG0580028810.01.T01
Chr5 CDS 86798031 86798355 86798031 ID=MsG0580028810.01.T01:cds;Parent=MsG0580028810.01.T01
Chr5 CDS 86797661 86797919 86797661 ID=MsG0580028810.01.T01:cds;Parent=MsG0580028810.01.T01
Chr5 CDS 86797324 86797588 86797324 ID=MsG0580028810.01.T01:cds;Parent=MsG0580028810.01.T01
Gene Sequence

>MsG0580028810.01.T01

ATGGAGAAGACAAGAAATGGAAGTGAAGAGGATCTTAAACTCGGGAGTCTTATAGATATTGTACTCTCATGGACCCTCGAGGATGTTCTAAACGGAAATCTTTACAAAGACAAGGTTCATAAGATTCCAGAGACATTTAAGTCAGCAACAGATTACATGAACTCTTTTATTCCTCTATTGTTGGAGGAAACACACGCTGATTTATCTTCAAGCTTGTTTGGTGTGTCTCAAGCTCCTTTATGTGAAATCCAGAATGTTGAAAAAAGCATAGAATTGACACTTCCCATTCCTGAAACAGAAAATCAATTCATACAGTTCCATCATGTCCTACGGTTGAAGAGTAGAAATGGTGGAAATTATAAACCTGTGTCAGGAGATCTCATTGCTTTCACACACATTAGGCCTAAAAGCTTTAATGACTTGAACGCACTCAAATGCATGAAGATTGATATCCAAATAATAAATGTTAAGGAGGCAGCCTATGTTAAGCAGGAAATCACGGTTCTGTCATCCAAATGCATGAAGATTGATATTAAATATGACTTGTGGCACAACAAAGAGATGAAACTGTATGCAGTTTACCTTATGAACATTACAACGAATGTTCGTATTCGGAATGCCCTGAAATCAATCCCATGCATGGACATAATTAAAACAGTGTTGGGACCACATCAAATTAGTGAAGAAAACTGTCAGCTTTGCCTGCCTGAACCAGATAGTCGGTCTTCTTTCATCAAAGAAGACACAGTAATTCGAACTCAGAATCTGAATGAATCCCAAGAAGATGCTGTTTCAAGCTGTGTTAGTATGATGAATTGCAATCATGCTGATATCAAACTTATATGGGGACCACCAGGGACAGGGAAAACTAAGACAGTTGCATGCTTGTTATTTTCTCTTCTCAAGTTACAAACCAGAACATTGACTTGCGCTCCAACTAATACTGCAATTTCGCAGGTGGCAAGTCGGTTGAATAGGTTAGTTATGGATTCACTTGAGCATGATACATATAGTTTGGGTGACATTGTGCTATTTGGCAATGGCAAGAGGATGAAATTCAGTTCTCATCAAGGCCTTGTCAAATTCTTTCTTGATTACCGTGTAGAGTATCTCATGGAATGCTTTGATCCAAATACCGGATGGGAGACTAACTTGCTATCAATGATACAGTTGCTCAAGTCCATGGAGAAATCAGCTAACAAAAAAGAGAGTAGTGAAGTATTTGAATACAAGCAAAAATTTGTTCAACAAAAAGATAAGCTCGAGTTCTTGATGCAAACTTTATATACACACATGCCAACATCTCTCATTTCACTGGAAATGGTGAAAAAAATGTTTCAAGCTCTGGATTTGCTAAAGTCTCTTGGAATTTCCATCGGGCAAGCCAAATTCAAGAAAAGAGATGAAAGCATTCCTGCTTACTTTCAACTGTTATACGTCAAAAGAGATGAGTGCCTTAGCATACTAAGTTCACTTTCTGAAACAGTTTCCCTTCCTAATTTTGAAACTTACAGGAGAGGTGGGATCAAGAGAGTTCAAGTGGAAGAATTTTGCTTGTCGAATGCTTGTCTAATTATGTGCACTGCATCAAGTTCTATGAAACTAATTGGCCCAGCAAAGGTGAAGCCAGTGCAATTTTTAGTAATTGATGAAGCTGCACAGCTAAAAGAATGTGAATCAACAATTCCATTACAGCTGTCCGGTCTCCGCCGTTGCATCCTAATCGGAGATGAGAGACAACTTCCTGCATTAGTAAAAAGCAAGATAGCAGACCAATGTGAATTTGGACGAAGTATGTTTGAAAGGCTTGTAATGTTGGGATACGAAAGAAAAATGCTTAATGTTCAGTATAGAATGCATCCTTTCATTAGCTTGTTCCCGTGCAAAGAGTTCTATGATGGAAAGCTATCTGATGCTCCTGTTGTCACGAAAGAAAGCTATAATAAGCATTTCCTTGAAGGAGAAATGTATTCTTCTTATTCTTTTATTAACATAGCCATGGGTAAAGAGCAATTTGGACATGGACAAAGTCTGAAGAACATGGTTGAGGTTGCTGTTATTTCTGAGATAATTAAAAGCCTTTATCAAGTGTTCATGAGGACAAAGAAGAAAGTAAGCACAGGAATCATATCTCCATATAATGCTCAAGTTTATGAAATTCAGGAGGAAATTAAGCAGTACACTCGGGTTGCTAATTCTAACTTCTCTGTAAATGTTCGTTCTGTTGATGGTTTTCAAGGCGGGGAGGAAGATATTATAATAATATCTACTGTGAGATCTAATGGGACTGGTGATGTTGGTTTTCTTTCAAATAGACAAAGAACAAATGTGGCTATAACAAGGGCTAGATATTGTCTTTGGATATTAGGAAATGCATCTACTCTAATAAACAGTGACTCTGTTTGGAGAAATGTAGTTATTGATGCTAAGAATAGGGATTGTTTCCACAATGCTGAAGAGGACAAAAAATTGGCCCGGGCCATTAAGAATGTTCTGTTCCAACTTCAACAGCTGGAAGAATTTGAGTCGCCATTGAAGAAACGGCGTTTAGGAGGGAAATCGGGAAATCATAGAATACCAAATACTCCTTATAGGCGAGTGGCACCAAATTAA
Protein sequence

>MsG0580028810.01.T01

MEKTRNGSEEDLKLGSLIDIVLSWTLEDVLNGNLYKDKVHKIPETFKSATDYMNSFIPLLLEETHADLSSSLFGVSQAPLCEIQNVEKSIELTLPIPETENQFIQFHHVLRLKSRNGGNYKPVSGDLIAFTHIRPKSFNDLNALKCMKIDIQIINVKEAAYVKQEITVLSSKCMKIDIKYDLWHNKEMKLYAVYLMNITTNVRIRNALKSIPCMDIIKTVLGPHQISEENCQLCLPEPDSRSSFIKEDTVIRTQNLNESQEDAVSSCVSMMNCNHADIKLIWGPPGTGKTKTVACLLFSLLKLQTRTLTCAPTNTAISQVASRLNRLVMDSLEHDTYSLGDIVLFGNGKRMKFSSHQGLVKFFLDYRVEYLMECFDPNTGWETNLLSMIQLLKSMEKSANKKESSEVFEYKQKFVQQKDKLEFLMQTLYTHMPTSLISLEMVKKMFQALDLLKSLGISIGQAKFKKRDESIPAYFQLLYVKRDECLSILSSLSETVSLPNFETYRRGGIKRVQVEEFCLSNACLIMCTASSSMKLIGPAKVKPVQFLVIDEAAQLKECESTIPLQLSGLRRCILIGDERQLPALVKSKIADQCEFGRSMFERLVMLGYERKMLNVQYRMHPFISLFPCKEFYDGKLSDAPVVTKESYNKHFLEGEMYSSYSFINIAMGKEQFGHGQSLKNMVEVAVISEIIKSLYQVFMRTKKKVSTGIISPYNAQVYEIQEEIKQYTRVANSNFSVNVRSVDGFQGGEEDIIIISTVRSNGTGDVGFLSNRQRTNVAITRARYCLWILGNASTLINSDSVWRNVVIDAKNRDCFHNAEEDKKLARAIKNVLFQLQQLEEFESPLKKRRLGGKSGNHRIPNTPYRRVAPN*