AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0580029285.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0580029285.01.T01 MTR_1g102670 94.048 84 5 0 56 139 202 285 2.09e-50 164
MsG0580029285.01.T01 MTR_5g091610 68.493 73 14 1 56 128 67 130 1.20e-23 94.0
MsG0580029285.01.T01 MTR_4g124560 48.276 87 44 1 56 141 218 304 5.81e-21 87.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0580029285.01.T01 AT3G22880 85.714 91 12 1 49 139 216 305 5.32e-49 161
MsG0580029285.01.T01 AT3G22880 85.714 91 12 1 49 139 216 305 5.59e-49 161
MsG0580029285.01.T01 AT5G20850 46.392 97 51 1 56 151 219 315 2.64e-21 88.6
MsG0580029285.01.T01 AT5G20850 47.727 88 45 1 56 142 219 306 2.04e-20 86.3

Find 102 sgRNAs with CRISPR-Local

Find 331 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATGAAGAGCTTCTTCATTTA+AGG 0.092334 5:+94746843 None:intergenic
TTCTGTGATTGCTCTGTTTC+GGG 0.186366 5:-94746339 MsG0580029285.01.T01:CDS
AATTCAAATCCATTGGTTAT+AGG 0.240760 5:-94744191 MsG0580029285.01.T01:three_prime_UTR
GAGTGGTGACTAGAAAATTT+TGG 0.243130 5:-94747827 MsG0580029285.01.T01:five_prime_UTR
GAACCTCAGTCATCAGTTCT+AGG 0.254865 5:-94744109 MsG0580029285.01.T01:three_prime_UTR
TCATAACAAATCAACATTCT+TGG 0.260968 5:+94747729 None:intergenic
GTTCTTAAAGCTCTCCTCTC+TGG 0.284854 5:-94743143 MsG0580029285.01.T01:three_prime_UTR
AAGCAGCAAAAGAGCTTAAC+TGG 0.304895 5:-94743213 MsG0580029285.01.T01:three_prime_UTR
CATCTGTTGGGATTATAAAA+TGG 0.305378 5:+94747538 None:intergenic
TGCTGTGATTGAGAAAATTA+AGG 0.306555 5:-94744071 MsG0580029285.01.T01:three_prime_UTR
ATTCTGTGATTGCTCTGTTT+CGG 0.316615 5:-94746340 MsG0580029285.01.T01:CDS
AGGCAGTGATTTGAAATAGA+TGG 0.335031 5:-94747804 MsG0580029285.01.T01:five_prime_UTR
ATCTCAATTGTTTCATACTT+TGG 0.336179 5:-94745624 MsG0580029285.01.T01:three_prime_UTR
TGAAGAGCTTCTTCATTTAA+GGG 0.343033 5:+94746844 None:intergenic
CCCATAACTTCCTTCTTCTT+CGG 0.344778 5:-94748579 MsG0580029285.01.T01:five_prime_UTR
CTCTCTGGTTTGCAGTGCCT+CGG 0.352723 5:-94746881 MsG0580029285.01.T01:intron
CTAACTTCAATTCTCATCAT+TGG 0.355336 5:+94743094 None:intergenic
CTCCGATCAGCCTTTACAAT+TGG 0.367849 5:+94743274 None:intergenic
TGTGCAGTTTGGTATTGTGC+TGG 0.389995 5:-94747860 MsG0580029285.01.T01:intron
TTCTTAAAGCTCTCCTCTCT+GGG 0.402066 5:-94743142 MsG0580029285.01.T01:three_prime_UTR
ACCGAAGAAGAAGGAAGTTA+TGG 0.402734 5:+94748578 None:intergenic
AATGTTGATTTGTTATGAAA+AGG 0.408067 5:-94747724 MsG0580029285.01.T01:intron
GAGGTTTATAACTTGGGAAC+AGG 0.410110 5:-94743817 MsG0580029285.01.T01:three_prime_UTR
CGGGTTGACTTCACAGGAAG+AGG 0.416420 5:-94746320 MsG0580029285.01.T01:CDS
CAGATGATTATGTGCGTGTC+AGG 0.421729 5:-94747521 MsG0580029285.01.T01:intron
CTGTTTCGGGTTGACTTCAC+AGG 0.422763 5:-94746326 MsG0580029285.01.T01:CDS
AAGATACAAACAAAGCCTTA+TGG 0.425346 5:+94745908 None:intergenic
GCTATTTATATGACAAATCA+AGG 0.425440 5:-94746135 MsG0580029285.01.T01:intron
AGAAAAGGGAAGGGGTGAAA+AGG 0.429738 5:-94745519 MsG0580029285.01.T01:three_prime_UTR
ATTCTTTCTTGCTAGAAAAC+CGG 0.435183 5:-94744434 MsG0580029285.01.T01:three_prime_UTR
AGGAGAGTTTGCTGAGCGCC+AGG 0.442904 5:-94746300 MsG0580029285.01.T01:intron
CCGAAGAAGAAGGAAGTTAT+GGG 0.449394 5:+94748579 None:intergenic
TTAGAAAATTCCAATTGTAA+AGG 0.455191 5:-94743284 MsG0580029285.01.T01:intron
GTTGCAGTCATAGCTGATCC+TGG 0.458885 5:-94745996 MsG0580029285.01.T01:intron
TAGCTCATGCAGCCACCATA+AGG 0.460512 5:-94745923 MsG0580029285.01.T01:CDS
TTACCTTCATCCTGGTGGAA+TGG 0.462355 5:-94744046 MsG0580029285.01.T01:three_prime_UTR
ATTATTCAATTCAAATCCAT+TGG 0.470369 5:-94744198 MsG0580029285.01.T01:three_prime_UTR
GAGAATATAGAAAGAAAGCC+AGG 0.470400 5:-94745392 MsG0580029285.01.T01:intron
AGGTTGTGAGGTTTATAACT+TGG 0.472015 5:-94743824 MsG0580029285.01.T01:three_prime_UTR
CATAACTCAAACAATCCAAC+AGG 0.479089 5:-94745424 MsG0580029285.01.T01:three_prime_UTR
AGAAGGAAGTTATGGGAATG+AGG 0.482814 5:+94748586 None:intergenic
TAGAAAACCGGACAACTTTG+AGG 0.485190 5:-94744422 MsG0580029285.01.T01:three_prime_UTR
ATTCTCTTCAGATTTCCTGT+TGG 0.491957 5:+94745409 None:intergenic
GGAAGTTATGGGAATGAGGA+AGG 0.493054 5:+94748590 None:intergenic
CACGCACATAATCATCTGTT+GGG 0.500249 5:+94747526 None:intergenic
TGTGATCGAACCGACTTGCT+TGG 0.501573 5:-94744279 MsG0580029285.01.T01:three_prime_UTR
ACATTGCCCTCAAAGTTGTC+CGG 0.503746 5:+94744415 None:intergenic
GTGCAGTTTGGTATTGTGCT+GGG 0.509667 5:-94747859 MsG0580029285.01.T01:intron
TAATAAAGCACAATTTCCTC+TGG 0.513963 5:+94744217 None:intergenic
GCTCCATTCCACCAGGATGA+AGG 0.518473 5:+94744043 None:intergenic
AGAAAACCGGACAACTTTGA+GGG 0.522312 5:-94744421 MsG0580029285.01.T01:three_prime_UTR
TTAAGGCTTTACCTTCATCC+TGG 0.524404 5:-94744054 MsG0580029285.01.T01:three_prime_UTR
GGTTGTGAGGTTTATAACTT+GGG 0.526110 5:-94743823 MsG0580029285.01.T01:three_prime_UTR
GTGTTCAACGGCGAGGTCGA+CGG 0.529985 5:+94748484 None:intergenic
TGATTGATGATACAGACAAC+CGG 0.530951 5:+94748399 None:intergenic
GAGAAGAGAACCGAAGAAGA+AGG 0.534389 5:+94748569 None:intergenic
GTTGTCTGTATCATCAATCA+AGG 0.535836 5:-94748396 MsG0580029285.01.T01:five_prime_UTR
TTTGTCTAGGTTCTTGACCA+TGG 0.538415 5:-94744460 MsG0580029285.01.T01:intron
AGATGGATTCGAAGTTATCA+TGG 0.540433 5:-94747787 MsG0580029285.01.T01:five_prime_UTR
ACACGCACATAATCATCTGT+TGG 0.545786 5:+94747525 None:intergenic
ACCTCTGGCTCCATTCCACC+AGG 0.550691 5:+94744036 None:intergenic
AAGAAGAAAACGGTGGAGAT+CGG 0.551309 5:+94748460 None:intergenic
GACGACGAGGTGGCGGTGTG+AGG 0.555348 5:+94748511 None:intergenic
TTCCAATTGTAAAGGCTGAT+CGG 0.556362 5:-94743276 MsG0580029285.01.T01:three_prime_UTR
CGGTGGAGACGACGAGGTGG+CGG 0.562312 5:+94748504 None:intergenic
TAAACAACTTCAGCATCTCT+AGG 0.562490 5:+94743250 None:intergenic
TATTAAACGCCTATAACCAA+TGG 0.563065 5:+94744182 None:intergenic
GTTATCTTGGCCATGGAGCA+TGG 0.563066 5:-94745585 MsG0580029285.01.T01:three_prime_UTR
CACACTGAGAAAGAAGAAAA+CGG 0.564005 5:+94748450 None:intergenic
AGGCTTTACCTTCATCCTGG+TGG 0.564640 5:-94744051 MsG0580029285.01.T01:three_prime_UTR
ACTGATCCGAAGAAACCAGC+AGG 0.564935 5:-94745957 MsG0580029285.01.T01:CDS
AGCTTAACTGGAAGTAAGTG+TGG 0.573954 5:-94743201 MsG0580029285.01.T01:three_prime_UTR
GTTTGGTATTGTGCTGGGAA+AGG 0.574412 5:-94747854 MsG0580029285.01.T01:five_prime_UTR
GTGGAGATCGGTGTGTTCAA+CGG 0.577389 5:+94748472 None:intergenic
GTCATAGCTGATCCTGGAGG+TGG 0.580976 5:-94745990 MsG0580029285.01.T01:CDS
GTCTGCACATACAGGTTGTG+AGG 0.594109 5:-94743836 MsG0580029285.01.T01:intron
AAAACTATCACCATGCTCCA+TGG 0.597334 5:+94745575 None:intergenic
ATGATGAATGCTGATGACTT+AGG 0.609577 5:+94744241 None:intergenic
TCCTGGTGGAATGGAGCCAG+AGG 0.614695 5:-94744037 MsG0580029285.01.T01:intron
TTCAACGGCGAGGTCGACGG+TGG 0.618065 5:+94748487 None:intergenic
GTAATGAACATACCACCTCC+AGG 0.619616 5:+94745978 None:intergenic
TGGTTTGCAGTGCCTCGGAG+TGG 0.622082 5:-94746876 MsG0580029285.01.T01:intron
TAGCAAGAAAGAATCATCCA+TGG 0.634446 5:+94744443 None:intergenic
TTATGATTGATAGGTTGGAG+TGG 0.638539 5:-94747584 MsG0580029285.01.T01:intron
CGTAGAATCTCCAAGCAAGT+CGG 0.640806 5:+94744269 None:intergenic
GATCGGTGTGTTCAACGGCG+AGG 0.643453 5:+94748477 None:intergenic
TCGATTGATCAAGATAGCTG+AGG 0.643678 5:-94746169 MsG0580029285.01.T01:CDS
ATACAAACAAAGCCTTATGG+TGG 0.647917 5:+94745911 None:intergenic
ATCAGCATTCATCATACCAG+AGG 0.649150 5:-94744233 MsG0580029285.01.T01:three_prime_UTR
GGGTTTAACTTTCCACTCCG+AGG 0.650702 5:+94746864 None:intergenic
CTGATCCGAAGAAACCAGCA+GGG 0.658286 5:-94745956 MsG0580029285.01.T01:CDS
TCAAGAAAACTTGCCCAGAG+AGG 0.670684 5:+94743129 None:intergenic
TGAATGCTGATGACTTAGGT+TGG 0.678310 5:+94744245 None:intergenic
GCAGTCATAGCTGATCCTGG+AGG 0.690582 5:-94745993 MsG0580029285.01.T01:intron
GATCCGAAGAAACCAGCAGG+GGG 0.690918 5:-94745954 MsG0580029285.01.T01:CDS
GGTCGACGGTGGAGACGACG+AGG 0.703732 5:+94748498 None:intergenic
GTGCTGGGAAAGGCTAAGAG+TGG 0.721903 5:-94747844 MsG0580029285.01.T01:five_prime_UTR
AAACCTAGAACTGATGACTG+AGG 0.723563 5:+94744106 None:intergenic
ACTGAGAAAGAAGAAAACGG+TGG 0.729219 5:+94748453 None:intergenic
TGATCCGAAGAAACCAGCAG+GGG 0.730847 5:-94745955 MsG0580029285.01.T01:CDS
CGACGGTGGAGACGACGAGG+TGG 0.732978 5:+94748501 None:intergenic
ATCCGAAGAAACCAGCAGGG+GGG 0.733114 5:-94745953 MsG0580029285.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAAACAATTTTTTTTTAGAT+AGG - Chr5:94744971-94744990 MsG0580029285.01.T01:intron 10.0%
!!! ATATTCTTTTTAAAATCAAT+TGG - Chr5:94745880-94745899 MsG0580029285.01.T01:CDS 10.0%
!!! GATGATTTTTTTTAATATTA+TGG - Chr5:94748089-94748108 MsG0580029285.01.T01:intron 10.0%
!!! TGATTTTTTTTAATATTATG+GGG - Chr5:94748091-94748110 MsG0580029285.01.T01:intron 10.0%
!! AAAAAAAATCATCTATCTTA+GGG + Chr5:94748082-94748101 None:intergenic 15.0%
!! AAATGAAAAAATTAATGTGT+CGG - Chr5:94748151-94748170 MsG0580029285.01.T01:intron 15.0%
!! AATAATTAATTACATGTTAC+TGG + Chr5:94743705-94743724 None:intergenic 15.0%
!! AATAATTATTTAAACTGTAC+TGG - Chr5:94744847-94744866 MsG0580029285.01.T01:intron 15.0%
!! AATACAAAATAACATCAAAT+AGG + Chr5:94746759-94746778 None:intergenic 15.0%
!! ATAATTATTTAAACTGTACT+GGG - Chr5:94744848-94744867 MsG0580029285.01.T01:intron 15.0%
!! ATTTATTTAGAAACTGAAAT+GGG - Chr5:94743947-94743966 MsG0580029285.01.T01:intron 15.0%
!! GTAACATGTAATTAATTATT+TGG - Chr5:94743705-94743724 MsG0580029285.01.T01:intron 15.0%
!! TAAAAAAAATCATCTATCTT+AGG + Chr5:94748083-94748102 None:intergenic 15.0%
!! TATATAAAAATCTTTCACTT+TGG - Chr5:94748056-94748075 MsG0580029285.01.T01:intron 15.0%
!! TATTTATTTAGAAACTGAAA+TGG - Chr5:94743946-94743965 MsG0580029285.01.T01:intron 15.0%
!! TTGCATTATTATACAATTAT+AGG + Chr5:94746911-94746930 None:intergenic 15.0%
!!! AGTTTTTTATAAGATATACA+AGG - Chr5:94748128-94748147 MsG0580029285.01.T01:intron 15.0%
!!! ATTTTATAAATGTCATTTGA+TGG - Chr5:94747924-94747943 MsG0580029285.01.T01:intron 15.0%
!!! ATTTTTTAAGGTAAATAAGT+GGG + Chr5:94746440-94746459 None:intergenic 15.0%
!!! CAATGATTATATAGTTTTTA+AGG - Chr5:94745773-94745792 MsG0580029285.01.T01:three_prime_UTR 15.0%
!!! TATTTTTTAAGGTAAATAAG+TGG + Chr5:94746441-94746460 None:intergenic 15.0%
!!! TTAATATTCATTCTTTTTTG+TGG - Chr5:94747430-94747449 MsG0580029285.01.T01:intron 15.0%
!! AAAATCACTGTTATAATTTG+GGG - Chr5:94746733-94746752 MsG0580029285.01.T01:intron 20.0%
!! AAAGAATATATAGCTAAGAA+AGG + Chr5:94747069-94747088 None:intergenic 20.0%
!! AAATGATTATCTTAACACTA+AGG + Chr5:94747981-94748000 None:intergenic 20.0%
!! AAATTCATTGTTAAACTCAT+TGG + Chr5:94744594-94744613 None:intergenic 20.0%
!! AAGAATATATAGCTAAGAAA+GGG + Chr5:94747068-94747087 None:intergenic 20.0%
!! AAGTGTAACATATAATATAG+TGG + Chr5:94747227-94747246 None:intergenic 20.0%
!! ACAAAACAACTAAAAAGATA+AGG + Chr5:94747120-94747139 None:intergenic 20.0%
!! ATTATTCAATTCAAATCCAT+TGG - Chr5:94747397-94747416 MsG0580029285.01.T01:intron 20.0%
!! CAAAATCACTGTTATAATTT+GGG - Chr5:94746732-94746751 MsG0580029285.01.T01:intron 20.0%
!! CAAATTCAAACATATATAGA+AGG + Chr5:94745117-94745136 None:intergenic 20.0%
!! CATTACACATTATATAAAAC+CGG - Chr5:94744134-94744153 MsG0580029285.01.T01:three_prime_UTR 20.0%
!! CTCTACAATTTAAATTCATA+AGG + Chr5:94746250-94746269 None:intergenic 20.0%
!! TAAGTGATAGCAAAATAAAA+AGG + Chr5:94747887-94747906 None:intergenic 20.0%
!! TAGAAATCAGTTAATAATAG+AGG - Chr5:94744500-94744519 MsG0580029285.01.T01:intron 20.0%
!! TATATGTTAGAATAGAAGTT+TGG - Chr5:94745046-94745065 MsG0580029285.01.T01:intron 20.0%
!! TATGAACAAAATCAATAATC+AGG + Chr5:94745507-94745526 None:intergenic 20.0%
!! TCAAAATCACTGTTATAATT+TGG - Chr5:94746731-94746750 MsG0580029285.01.T01:intron 20.0%
!! TTAGAAAATTCCAATTGTAA+AGG - Chr5:94748311-94748330 MsG0580029285.01.T01:intron 20.0%
!! TTATTTAATTAAGCTGAAGA+AGG - Chr5:94746795-94746814 MsG0580029285.01.T01:intron 20.0%
!! TTGTCACTAAAATCTAATAA+AGG + Chr5:94744924-94744943 None:intergenic 20.0%
!!! AAAACAACTATCATTGATTA+TGG + Chr5:94747681-94747700 None:intergenic 20.0%
!!! AAAAGTTAAGACAGTTTTTA+AGG - Chr5:94745816-94745835 MsG0580029285.01.T01:three_prime_UTR 20.0%
!!! AAAATCTAATAAAGGCATAT+GGG + Chr5:94744916-94744935 None:intergenic 20.0%
!!! AAACAACTATCATTGATTAT+GGG + Chr5:94747680-94747699 None:intergenic 20.0%
!!! AATGATAGTTGTTTTTTCTT+TGG - Chr5:94747686-94747705 MsG0580029285.01.T01:intron 20.0%
!!! AATGTTGATTTGTTATGAAA+AGG - Chr5:94743871-94743890 MsG0580029285.01.T01:intron 20.0%
!!! ACAGTTTTTAAGGTTAAATT+AGG - Chr5:94745826-94745845 MsG0580029285.01.T01:exon 20.0%
!!! ACATATTGGTAATTTTCTAT+AGG - Chr5:94747259-94747278 MsG0580029285.01.T01:intron 20.0%
!!! AGTAATTTATTTGTTGAGTT+GGG - Chr5:94746872-94746891 MsG0580029285.01.T01:intron 20.0%
!!! ATTATTAACTGATTTCTAGT+TGG + Chr5:94744498-94744517 None:intergenic 20.0%
!!! ATTCAGAGTTTTATATTCAA+TGG - Chr5:94744379-94744398 MsG0580029285.01.T01:intron 20.0%
!!! CAGTTTTTAAGGTTAAATTA+GGG - Chr5:94745827-94745846 MsG0580029285.01.T01:exon 20.0%
!!! CATATTGGTAATTTTCTATA+GGG - Chr5:94747260-94747279 MsG0580029285.01.T01:intron 20.0%
!!! GAAAATTACCAATATGTTTT+AGG + Chr5:94747256-94747275 None:intergenic 20.0%
!!! GAGCATTTTTTCTTTTTAAT+CGG - Chr5:94743287-94743306 MsG0580029285.01.T01:intron 20.0%
!!! GCTAGAATTCATATTTTTTA+AGG + Chr5:94746452-94746471 None:intergenic 20.0%
!!! TAAAATCTAATAAAGGCATA+TGG + Chr5:94744917-94744936 None:intergenic 20.0%
!!! TAGTAATTTATTTGTTGAGT+TGG - Chr5:94746871-94746890 MsG0580029285.01.T01:intron 20.0%
!!! TTATTTTAGTTTCTTTTGAC+CGG + Chr5:94744156-94744175 None:intergenic 20.0%
!!! TTCTTATTTTTGTGTTATCT+TGG - Chr5:94745997-94746016 MsG0580029285.01.T01:intron 20.0%
!!! TTGTAAAATAATGGATCATT+AGG - Chr5:94744258-94744277 MsG0580029285.01.T01:three_prime_UTR 20.0%
!!! TTTAATCGGTTTAGTTTTTT+TGG - Chr5:94743301-94743320 MsG0580029285.01.T01:intron 20.0%
!!! TTTGATTTTATATGTGTTTC+AGG - Chr5:94743493-94743512 MsG0580029285.01.T01:intron 20.0%
!!! TTTTGTGATATAGAAATTCA+TGG - Chr5:94743551-94743570 MsG0580029285.01.T01:intron 20.0%
!!! TTTTTTCATTTCAGTAAAAG+CGG + Chr5:94745372-94745391 None:intergenic 20.0%
! AAAACACACTTCTTCAAAAA+TGG + Chr5:94745908-94745927 None:intergenic 25.0%
! AAACAAGAGAAAAAAAGTGA+AGG - Chr5:94744235-94744254 MsG0580029285.01.T01:three_prime_UTR 25.0%
! AAATAAAAACCATATGTGCA+TGG - Chr5:94744170-94744189 MsG0580029285.01.T01:three_prime_UTR 25.0%
! AACAAAATCAATAATCAGGT+TGG + Chr5:94745503-94745522 None:intergenic 25.0%
! AAGTGAAGGTTGTAAAATAA+TGG - Chr5:94744249-94744268 MsG0580029285.01.T01:three_prime_UTR 25.0%
! AATAAACTGAAACAACAAAG+CGG + Chr5:94743383-94743402 None:intergenic 25.0%
! ACTAACCAAAAAACAGAAAA+GGG - Chr5:94746062-94746081 MsG0580029285.01.T01:intron 25.0%
! AGAATAGAAGCTACAAATAA+TGG - Chr5:94745012-94745031 MsG0580029285.01.T01:intron 25.0%
! AGAATATATAGCTAAGAAAG+GGG + Chr5:94747067-94747086 None:intergenic 25.0%
! AGTAAACTTCATTGAATAAC+TGG + Chr5:94744444-94744463 None:intergenic 25.0%
! ATCTCAATTGTTTCATACTT+TGG - Chr5:94745971-94745990 MsG0580029285.01.T01:CDS 25.0%
! ATTAAATCATCAATTGCAGA+GGG - Chr5:94743619-94743638 MsG0580029285.01.T01:intron 25.0%
! ATTAAGCTATTGTTTAGTAC+AGG - Chr5:94748258-94748277 MsG0580029285.01.T01:intron 25.0%
! GCTATTTATATGACAAATCA+AGG - Chr5:94745460-94745479 MsG0580029285.01.T01:three_prime_UTR 25.0%
! TAAAGGGATTAAAAATCTGT+TGG + Chr5:94745346-94745365 None:intergenic 25.0%
! TATATGTTTGCAGTGTTATA+TGG - Chr5:94743586-94743605 MsG0580029285.01.T01:intron 25.0%
! TCAACACAACTCATTATATA+AGG + Chr5:94746287-94746306 None:intergenic 25.0%
! TCATAACAAATCAACATTCT+TGG + Chr5:94743869-94743888 None:intergenic 25.0%
! TCTTTCTTAAAAGTGAATCA+TGG + Chr5:94746514-94746533 None:intergenic 25.0%
! TGATTTCTATTACTTTCACT+TGG - Chr5:94743910-94743929 MsG0580029285.01.T01:intron 25.0%
! TTAATAATAGAGGAGTTCTT+AGG - Chr5:94744510-94744529 MsG0580029285.01.T01:intron 25.0%
! TTCAATGAAGTTTACTGTAT+TGG - Chr5:94744448-94744467 MsG0580029285.01.T01:three_prime_UTR 25.0%
! TTCTGAATCCTAAAACATAT+TGG - Chr5:94747245-94747264 MsG0580029285.01.T01:intron 25.0%
!! AAATCTAATAAAGGCATATG+GGG + Chr5:94744915-94744934 None:intergenic 25.0%
!! AATTCAAATCCATTGGTTAT+AGG - Chr5:94747404-94747423 MsG0580029285.01.T01:intron 25.0%
!! ATGTTTTATGATTGATAGGT+TGG - Chr5:94744006-94744025 MsG0580029285.01.T01:intron 25.0%
!! ATTACTTTCACTTGGATTTT+TGG - Chr5:94743918-94743937 MsG0580029285.01.T01:intron 25.0%
!! GGTTATGTTTTATGATTGAT+AGG - Chr5:94744002-94744021 MsG0580029285.01.T01:intron 25.0%
!! GTAATTTATTTGTTGAGTTG+GGG - Chr5:94746873-94746892 MsG0580029285.01.T01:intron 25.0%
!! GTTGATAAATTGAAGAAATC+AGG - Chr5:94746302-94746321 MsG0580029285.01.T01:CDS 25.0%
!! TGTTATATACATTTTGAGCA+CGG - Chr5:94748542-94748561 MsG0580029285.01.T01:five_prime_UTR 25.0%
!! TTACTTTCACTTGGATTTTT+GGG - Chr5:94743919-94743938 MsG0580029285.01.T01:intron 25.0%
!!! CGGTTTTATATAATGTGTAA+TGG + Chr5:94744136-94744155 None:intergenic 25.0%
!!! CTGTCTTTGAACAAATTTTT+TGG - Chr5:94748569-94748588 MsG0580029285.01.T01:five_prime_UTR 25.0%
!!! GTGTACAGAATTTTGTTTTT+TGG - Chr5:94747609-94747628 MsG0580029285.01.T01:intron 25.0%
!!! TATTCATTCTTTTTTGTGGT+AGG - Chr5:94747434-94747453 MsG0580029285.01.T01:intron 25.0%
!!! TCTTTTTAGTTGTTTTGTCT+AGG - Chr5:94747122-94747141 MsG0580029285.01.T01:intron 25.0%
!!! TGTTTTTTGGTTTTGTTGTT+TGG - Chr5:94747622-94747641 MsG0580029285.01.T01:intron 25.0%
AACAAAATCGCACCAAAAAA+TGG + Chr5:94743257-94743276 None:intergenic 30.0%
AACAATCGAGATGATGAAAA+TGG - Chr5:94744534-94744553 MsG0580029285.01.T01:intron 30.0%
AAGATACAAACAAAGCCTTA+TGG + Chr5:94745690-94745709 None:intergenic 30.0%
AATCAAAACCACCTATTCTA+TGG + Chr5:94744362-94744381 None:intergenic 30.0%
AATTTCTTCGCAGCAAAAAT+TGG - Chr5:94745390-94745409 MsG0580029285.01.T01:intron 30.0%
ACAAAATCGCACCAAAAAAT+GGG + Chr5:94743256-94743275 None:intergenic 30.0%
ACCTTTGTCTAATACTTCTA+TGG - Chr5:94746846-94746865 MsG0580029285.01.T01:CDS 30.0%
ATATGCATTGTTATACGTAG+GGG - Chr5:94746392-94746411 MsG0580029285.01.T01:intron 30.0%
ATGAAGAGCTTCTTCATTTA+AGG + Chr5:94744755-94744774 None:intergenic 30.0%
ATTCTTTCTTGCTAGAAAAC+CGG - Chr5:94747161-94747180 MsG0580029285.01.T01:intron 30.0%
ATTGGTATTGTTATGTGATG+TGG - Chr5:94743981-94744000 MsG0580029285.01.T01:intron 30.0%
CACTAACCAAAAAACAGAAA+AGG - Chr5:94746061-94746080 MsG0580029285.01.T01:intron 30.0%
CATCTGTTGGGATTATAAAA+TGG + Chr5:94744060-94744079 None:intergenic 30.0%
CATTAAATCATCAATTGCAG+AGG - Chr5:94743618-94743637 MsG0580029285.01.T01:intron 30.0%
CCATGAAAAACAGATTCATT+GGG + Chr5:94744298-94744317 None:intergenic 30.0%
CTAACTTCAATTCTCATCAT+TGG + Chr5:94748504-94748523 None:intergenic 30.0%
CTGATGAAAAGGGAAAATAA+GGG - Chr5:94744201-94744220 MsG0580029285.01.T01:three_prime_UTR 30.0%
GATATGCATTGTTATACGTA+GGG - Chr5:94746391-94746410 MsG0580029285.01.T01:intron 30.0%
TAATAAAGCACAATTTCCTC+TGG + Chr5:94747381-94747400 None:intergenic 30.0%
TATATGTGTTTCAGGATTGA+TGG - Chr5:94743501-94743520 MsG0580029285.01.T01:intron 30.0%
TATTAAACGCCTATAACCAA+TGG + Chr5:94747416-94747435 None:intergenic 30.0%
TGAAGAGCTTCTTCATTTAA+GGG + Chr5:94744754-94744773 None:intergenic 30.0%
TGACTTAAATGACATGTCTT+TGG + Chr5:94746714-94746733 None:intergenic 30.0%
TGCTGTGATTGAGAAAATTA+AGG - Chr5:94747524-94747543 MsG0580029285.01.T01:CDS 30.0%
! ACTTTTATGTGATGTTGTTC+TGG - Chr5:94747725-94747744 MsG0580029285.01.T01:exon 30.0%
! ATTGATGATTTAATGCCTTC+TGG + Chr5:94743613-94743632 None:intergenic 30.0%
! CTTCCATTCTTGTTTCAAAA+GGG - Chr5:94746684-94746703 MsG0580029285.01.T01:intron 30.0%
! GGACATTTTGTATCAAAGAA+AGG - Chr5:94744032-94744051 MsG0580029285.01.T01:intron 30.0%
! TACTTTCACTTGGATTTTTG+GGG - Chr5:94743920-94743939 MsG0580029285.01.T01:intron 30.0%
! TGCATAAAGCTGTAATTTGT+TGG - Chr5:94747651-94747670 MsG0580029285.01.T01:intron 30.0%
! TTAATTTTCTCAATCACAGC+AGG + Chr5:94747525-94747544 None:intergenic 30.0%
! TTGATGATTTAATGCCTTCT+GGG + Chr5:94743612-94743631 None:intergenic 30.0%
! TTTAGTGATAAGTTGGATGA+TGG - Chr5:94744876-94744895 MsG0580029285.01.T01:intron 30.0%
!! AAATGGGTTTTTGCTGATAT+TGG - Chr5:94743963-94743982 MsG0580029285.01.T01:intron 30.0%
!! ACCATAGAAGTATTAGACAA+AGG + Chr5:94746850-94746869 None:intergenic 30.0%
!! ATAGCTTTCGTTTTTAGATG+TGG - Chr5:94745524-94745543 MsG0580029285.01.T01:three_prime_UTR 30.0%
!! ATAGTTTTCACTTTTCAGTC+AGG - Chr5:94746035-94746054 MsG0580029285.01.T01:intron 30.0%
!! ATATATGGTTGAGTTGATAG+AGG + Chr5:94746584-94746603 None:intergenic 30.0%
!! ATTAGACAAAGGTACTTCTA+TGG + Chr5:94746839-94746858 None:intergenic 30.0%
!! GGTAGATTTTAGTGATAAGT+TGG - Chr5:94744869-94744888 MsG0580029285.01.T01:intron 30.0%
!! TCTGGTTGATTTTCGATATT+TGG - Chr5:94743463-94743482 MsG0580029285.01.T01:intron 30.0%
!!! GTTTTGAGAAAAAAGAAACC+TGG + Chr5:94746224-94746243 None:intergenic 30.0%
!!! GTTTTTTTGTTTACTGTGTG+AGG + Chr5:94743051-94743070 None:intergenic 30.0%
!!! TCTCGTGTTTGCTATTTTAT+TGG + Chr5:94745178-94745197 None:intergenic 30.0%
!!! TTACCCTTTTGAAACAAGAA+TGG + Chr5:94746690-94746709 None:intergenic 30.0%
!!! TTAGTTTTTTTGGTATGTCC+TGG - Chr5:94743311-94743330 MsG0580029285.01.T01:intron 30.0%
!!! TTCTTTTTCAAGTAGCCTTA+GGG + Chr5:94746475-94746494 None:intergenic 30.0%
!!! TTTCTTTTTCAAGTAGCCTT+AGG + Chr5:94746476-94746495 None:intergenic 30.0%
AATATGAATTCTAGCCCCTA+AGG - Chr5:94746457-94746476 MsG0580029285.01.T01:intron 35.0%
ACCAAAAAACAGAAAAGGGA+AGG - Chr5:94746066-94746085 MsG0580029285.01.T01:intron 35.0%
ACTGGCAAATTGAACACAAA+AGG + Chr5:94743687-94743706 None:intergenic 35.0%
AGAAGACAAAGAACAGAGAA+AGG + Chr5:94746657-94746676 None:intergenic 35.0%
AGGTTGTGAGGTTTATAACT+TGG - Chr5:94747771-94747790 MsG0580029285.01.T01:five_prime_UTR 35.0%
ATGATGAATGCTGATGACTT+AGG + Chr5:94747357-94747376 None:intergenic 35.0%
ATGGATCATTAGGTATGTGA+TGG - Chr5:94744268-94744287 MsG0580029285.01.T01:three_prime_UTR 35.0%
ATTCTCTTCAGATTTCCTGT+TGG + Chr5:94746189-94746208 None:intergenic 35.0%
ATTCTGTGATTGCTCTGTTT+CGG - Chr5:94745255-94745274 MsG0580029285.01.T01:intron 35.0%
ATTGTTAAACTCATTGGCGT+AGG + Chr5:94744588-94744607 None:intergenic 35.0%
CAAAAAACAGAAAAGGGAAG+GGG - Chr5:94746068-94746087 MsG0580029285.01.T01:intron 35.0%
CACACTGAGAAAGAAGAAAA+CGG + Chr5:94743148-94743167 None:intergenic 35.0%
CATAACTCAAACAATCCAAC+AGG - Chr5:94746171-94746190 MsG0580029285.01.T01:CDS 35.0%
CCAAAAAACAGAAAAGGGAA+GGG - Chr5:94746067-94746086 MsG0580029285.01.T01:intron 35.0%
CCTGATGAAAAGGGAAAATA+AGG - Chr5:94744200-94744219 MsG0580029285.01.T01:three_prime_UTR 35.0%
GAGAATATAGAAAGAAAGCC+AGG - Chr5:94746203-94746222 MsG0580029285.01.T01:intron 35.0%
GATCAATCTTCCATCATGTT+TGG - Chr5:94746932-94746951 MsG0580029285.01.T01:intron 35.0%
GCCATGAAAAACAGATTCAT+TGG + Chr5:94744299-94744318 None:intergenic 35.0%
GGATATGCATTGTTATACGT+AGG - Chr5:94746390-94746409 MsG0580029285.01.T01:intron 35.0%
GGTTGTGAGGTTTATAACTT+GGG - Chr5:94747772-94747791 MsG0580029285.01.T01:five_prime_UTR 35.0%
GTTGTCTGTATCATCAATCA+AGG - Chr5:94743199-94743218 MsG0580029285.01.T01:three_prime_UTR 35.0%
TAAACAACTTCAGCATCTCT+AGG + Chr5:94748348-94748367 None:intergenic 35.0%
TAAACTCTTAAGATCACCTC+TGG + Chr5:94747577-94747596 None:intergenic 35.0%
TACTGCTGTTATATGTATCC+TGG - Chr5:94744656-94744675 MsG0580029285.01.T01:intron 35.0%
TAGCAAGAAAGAATCATCCA+TGG + Chr5:94747155-94747174 None:intergenic 35.0%
TATGTCAAAACACGCTCAAA+AGG - Chr5:94746958-94746977 MsG0580029285.01.T01:intron 35.0%
TCAGTAAAAGCGGACATAAA+GGG + Chr5:94745362-94745381 None:intergenic 35.0%
TCTGTATCATCAATCAAGGT+TGG - Chr5:94743203-94743222 MsG0580029285.01.T01:three_prime_UTR 35.0%
TGACATAGAACCAAACATGA+TGG + Chr5:94746945-94746964 None:intergenic 35.0%
TGATGAAAATGGTTCAGCTA+AGG - Chr5:94744545-94744564 MsG0580029285.01.T01:intron 35.0%
TTCAGTAAAAGCGGACATAA+AGG + Chr5:94745363-94745382 None:intergenic 35.0%
TTCCAATTGTAAAGGCTGAT+CGG - Chr5:94748319-94748338 MsG0580029285.01.T01:intron 35.0%
! AATTTTCTATAGGGCTGAGT+TGG - Chr5:94747269-94747288 MsG0580029285.01.T01:intron 35.0%
! ACTTTGATGATAGAGAAGTG+TGG + Chr5:94746629-94746648 None:intergenic 35.0%
! AGATGGATTCGAAGTTATCA+TGG - Chr5:94743808-94743827 MsG0580029285.01.T01:three_prime_UTR 35.0%
! AGGCAGTGATTTGAAATAGA+TGG - Chr5:94743791-94743810 MsG0580029285.01.T01:three_prime_UTR 35.0%
! ATACAAACAAAGCCTTATGG+TGG + Chr5:94745687-94745706 None:intergenic 35.0%
! GAGTGGTGACTAGAAAATTT+TGG - Chr5:94743768-94743787 MsG0580029285.01.T01:three_prime_UTR 35.0%
! GATGGTTACAACTTTTGAAC+AGG - Chr5:94747822-94747841 MsG0580029285.01.T01:five_prime_UTR 35.0%
! GCTTCCATTCTTGTTTCAAA+AGG - Chr5:94746683-94746702 MsG0580029285.01.T01:intron 35.0%
! TATCTGACGATACTGAGTTT+TGG - Chr5:94745577-94745596 MsG0580029285.01.T01:three_prime_UTR 35.0%
! TGATTGATGATACAGACAAC+CGG + Chr5:94743199-94743218 None:intergenic 35.0%
! TGGTGACTAGAAAATTTTGG+AGG - Chr5:94743771-94743790 MsG0580029285.01.T01:three_prime_UTR 35.0%
! TTATGATTGATAGGTTGGAG+TGG - Chr5:94744011-94744030 MsG0580029285.01.T01:intron 35.0%
! TTTTTGTGTTATCTTGGCCA+TGG - Chr5:94746003-94746022 MsG0580029285.01.T01:intron 35.0%
!! CCCAATGAATCTGTTTTTCA+TGG - Chr5:94744295-94744314 MsG0580029285.01.T01:three_prime_UTR 35.0%
!! GATTTTCGATATTTGGTGAG+TGG - Chr5:94743470-94743489 MsG0580029285.01.T01:intron 35.0%
!! GTTCTGAGATGTGTTTGATT+TGG - Chr5:94743343-94743362 MsG0580029285.01.T01:intron 35.0%
!! TCAATAATCAGGTTGGACTT+AGG + Chr5:94745496-94745515 None:intergenic 35.0%
!!! CCTTATTTTCCCTTTTCATC+AGG + Chr5:94744203-94744222 None:intergenic 35.0%
!!! GTGAACATCAGTTTTAGAGA+TGG - Chr5:94747804-94747823 MsG0580029285.01.T01:five_prime_UTR 35.0%
!!! GTTTTTTCTTTGGCGTGTTT+TGG - Chr5:94747696-94747715 MsG0580029285.01.T01:intron 35.0%
!!! TCTTTTTCAAGTAGCCTTAG+GGG + Chr5:94746474-94746493 None:intergenic 35.0%
AAAAATGAAGCTGTGAAGCC+AGG - Chr5:94744336-94744355 MsG0580029285.01.T01:intron 40.0%
AAAACTATCACCATGCTCCA+TGG + Chr5:94746023-94746042 None:intergenic 40.0%
AAACCCAGTACATGCAAAAG+AGG + Chr5:94743440-94743459 None:intergenic 40.0%
AAACCTAGAACTGATGACTG+AGG + Chr5:94747492-94747511 None:intergenic 40.0%
AAGAAGAAAACGGTGGAGAT+CGG + Chr5:94743138-94743157 None:intergenic 40.0%
AAGAAGGATCTGCAAGTTGT+TGG - Chr5:94746811-94746830 MsG0580029285.01.T01:intron 40.0%
AAGCAGCAAAAGAGCTTAAC+TGG - Chr5:94748382-94748401 MsG0580029285.01.T01:intron 40.0%
AATCATCAATTGCAGAGGGT+TGG - Chr5:94743623-94743642 MsG0580029285.01.T01:intron 40.0%
ACACGCACATAATCATCTGT+TGG + Chr5:94744073-94744092 None:intergenic 40.0%
ACCGAAGAAGAAGGAAGTTA+TGG + Chr5:94743020-94743039 None:intergenic 40.0%
ACTGAGAAAGAAGAAAACGG+TGG + Chr5:94743145-94743164 None:intergenic 40.0%
ACTGCAAACCAGAGAGAAAT+AGG + Chr5:94744710-94744729 None:intergenic 40.0%
AGAAAACCGGACAACTTTGA+GGG - Chr5:94747174-94747193 MsG0580029285.01.T01:intron 40.0%
AGAAGGAAGTTATGGGAATG+AGG + Chr5:94743012-94743031 None:intergenic 40.0%
AGCTTAACTGGAAGTAAGTG+TGG - Chr5:94748394-94748413 MsG0580029285.01.T01:intron 40.0%
ATCAGCATTCATCATACCAG+AGG - Chr5:94747362-94747381 MsG0580029285.01.T01:intron 40.0%
CAACTGAGTTTGTCAGTGAA+TGG - Chr5:94744411-94744430 MsG0580029285.01.T01:intron 40.0%
CACGAGACAATCATGTGATT+TGG - Chr5:94745191-94745210 MsG0580029285.01.T01:intron 40.0%
CACGCACATAATCATCTGTT+GGG + Chr5:94744072-94744091 None:intergenic 40.0%
CATTTCATGTCTGCACATAC+AGG - Chr5:94747751-94747770 MsG0580029285.01.T01:five_prime_UTR 40.0%
CCCATAACTTCCTTCTTCTT+CGG - Chr5:94743016-94743035 MsG0580029285.01.T01:three_prime_UTR 40.0%
CCGAAGAAGAAGGAAGTTAT+GGG + Chr5:94743019-94743038 None:intergenic 40.0%
CTGCAAACCAGAGAGAAATA+GGG + Chr5:94744709-94744728 None:intergenic 40.0%
GAGGTTTATAACTTGGGAAC+AGG - Chr5:94747778-94747797 MsG0580029285.01.T01:five_prime_UTR 40.0%
GGTCTCATTCCTGATGAAAA+GGG - Chr5:94744191-94744210 MsG0580029285.01.T01:three_prime_UTR 40.0%
GTAAATAAGTGGGATGTTCG+AGG + Chr5:94746430-94746449 None:intergenic 40.0%
TAAGCATAGTCCAATTGGCA+GGG - Chr5:94746369-94746388 MsG0580029285.01.T01:CDS 40.0%
TAGAAAACCGGACAACTTTG+AGG - Chr5:94747173-94747192 MsG0580029285.01.T01:intron 40.0%
TCAGAGTCATCTAGAAAGTG+AGG - Chr5:94744777-94744796 MsG0580029285.01.T01:intron 40.0%
TCAGATAAGCAATACGCATC+AGG + Chr5:94745564-94745583 None:intergenic 40.0%
TCATGACTAATTCACAGACC+TGG + Chr5:94745316-94745335 None:intergenic 40.0%
TCGATTGATCAAGATAGCTG+AGG - Chr5:94745426-94745445 MsG0580029285.01.T01:three_prime_UTR 40.0%
TGAATGCTGATGACTTAGGT+TGG + Chr5:94747353-94747372 None:intergenic 40.0%
TGCCAATTGGACTATGCTTA+CGG + Chr5:94746369-94746388 None:intergenic 40.0%
TGGTCTCATTCCTGATGAAA+AGG - Chr5:94744190-94744209 MsG0580029285.01.T01:three_prime_UTR 40.0%
TTAAGGCTTTACCTTCATCC+TGG - Chr5:94747541-94747560 MsG0580029285.01.T01:CDS 40.0%
TTCTGTGATTGCTCTGTTTC+GGG - Chr5:94745256-94745275 MsG0580029285.01.T01:intron 40.0%
TTCTTAAAGCTCTCCTCTCT+GGG - Chr5:94748453-94748472 MsG0580029285.01.T01:five_prime_UTR 40.0%
TTTGTCTAGGTTCTTGACCA+TGG - Chr5:94747135-94747154 MsG0580029285.01.T01:intron 40.0%
! ACAACTTTTGAACAGGCATC+TGG - Chr5:94747829-94747848 MsG0580029285.01.T01:five_prime_UTR 40.0%
! CTTCGTTTTGCTTCTTCTTC+CGG - Chr5:94743177-94743196 MsG0580029285.01.T01:three_prime_UTR 40.0%
! GTTCCTCTTTTGCATGTACT+GGG - Chr5:94743434-94743453 MsG0580029285.01.T01:intron 40.0%
! TGTTCCTCTTTTGCATGTAC+TGG - Chr5:94743433-94743452 MsG0580029285.01.T01:intron 40.0%
! TTAACCTCCCTATTTCTCTC+TGG - Chr5:94744699-94744718 MsG0580029285.01.T01:intron 40.0%
! TTCTTGAGCGTGTTTTGTGT+AGG + Chr5:94747019-94747038 None:intergenic 40.0%
! TTTTGAACAGGCATCTGGAA+AGG - Chr5:94747834-94747853 MsG0580029285.01.T01:five_prime_UTR 40.0%
!! AGTTGATAGAGGAAGAGGAT+AGG + Chr5:94746573-94746592 None:intergenic 40.0%
!! CCCTTCCCTTTTCTGTTTTT+TGG + Chr5:94746070-94746089 None:intergenic 40.0%
!!! TGCTTGCATGTCCCATTTTT+TGG - Chr5:94743242-94743261 MsG0580029285.01.T01:three_prime_UTR 40.0%
AAACCACCTATTCTATGGCC+TGG + Chr5:94744357-94744376 None:intergenic 45.0%
ACATTGCCCTCAAAGTTGTC+CGG + Chr5:94747183-94747202 None:intergenic 45.0%
AGAAAAGGGAAGGGGTGAAA+AGG - Chr5:94746076-94746095 MsG0580029285.01.T01:intron 45.0%
CAAACCAGAGAGAAATAGGG+AGG + Chr5:94744706-94744725 None:intergenic 45.0%
CAATGCATATCCCTGCCAAT+TGG + Chr5:94746382-94746401 None:intergenic 45.0%
CAGATGATTATGTGCGTGTC+AGG - Chr5:94744074-94744093 MsG0580029285.01.T01:three_prime_UTR 45.0%
CCAATTGGACTATGCTTACG+GGG + Chr5:94746367-94746386 None:intergenic 45.0%
CGTAGAATCTCCAAGCAAGT+CGG + Chr5:94747329-94747348 None:intergenic 45.0%
CTCCGATCAGCCTTTACAAT+TGG + Chr5:94748324-94748343 None:intergenic 45.0%
GAACCTCAGTCATCAGTTCT+AGG - Chr5:94747486-94747505 MsG0580029285.01.T01:intron 45.0%
GAGAAGAGAACCGAAGAAGA+AGG + Chr5:94743029-94743048 None:intergenic 45.0%
GATGTTCGAGGTTCGAATTC+CGG + Chr5:94746418-94746437 None:intergenic 45.0%
GCCAATTGGACTATGCTTAC+GGG + Chr5:94746368-94746387 None:intergenic 45.0%
GGAAGTTATGGGAATGAGGA+AGG + Chr5:94743008-94743027 None:intergenic 45.0%
GGAATGAGACCATGCACATA+TGG + Chr5:94744182-94744201 None:intergenic 45.0%
GTAAGCATAGTCCAATTGGC+AGG - Chr5:94746368-94746387 MsG0580029285.01.T01:CDS 45.0%
GTAATGAACATACCACCTCC+AGG + Chr5:94745620-94745639 None:intergenic 45.0%
GTGCAGTTTGGTATTGTGCT+GGG - Chr5:94743736-94743755 MsG0580029285.01.T01:intron 45.0%
GTTCTTAAAGCTCTCCTCTC+TGG - Chr5:94748452-94748471 MsG0580029285.01.T01:five_prime_UTR 45.0%
GTTTGGTATTGTGCTGGGAA+AGG - Chr5:94743741-94743760 MsG0580029285.01.T01:intron 45.0%
TAAACTCATTGGCGTAGGCA+TGG + Chr5:94744583-94744602 None:intergenic 45.0%
TACGGGGACGATAATTGAGA+AGG + Chr5:94746351-94746370 None:intergenic 45.0%
TCAAGAAAACTTGCCCAGAG+AGG + Chr5:94748469-94748488 None:intergenic 45.0%
TCTCAGAACTGCAATCAACC+AGG + Chr5:94743332-94743351 None:intergenic 45.0%
TGTGCAGTTTGGTATTGTGC+TGG - Chr5:94743735-94743754 MsG0580029285.01.T01:intron 45.0%
TTACCTTCATCCTGGTGGAA+TGG - Chr5:94747549-94747568 MsG0580029285.01.T01:CDS 45.0%
TTGGTACGTTCTGTGCAGTT+TGG - Chr5:94743724-94743743 MsG0580029285.01.T01:intron 45.0%
! GATAAGTTGGATGATGGCCA+TGG - Chr5:94744882-94744901 MsG0580029285.01.T01:intron 45.0%
! TGAGAGGAGAGGGGTATATA+TGG + Chr5:94746599-94746618 None:intergenic 45.0%
!! GGTTGAGTTGATAGAGGAAG+AGG + Chr5:94746578-94746597 None:intergenic 45.0%
!!! GCATGTACTGGGTTTTGTTC+TGG - Chr5:94743445-94743464 MsG0580029285.01.T01:intron 45.0%
!!! ATGATTTTTTTTAATATTAT+GGG - Chr5:94748090-94748109 MsG0580029285.01.T01:intron 5.0%
AAGCCAGGCCATAGAATAGG+TGG - Chr5:94744351-94744370 MsG0580029285.01.T01:intron 50.0%
ACTGATCCGAAGAAACCAGC+AGG - Chr5:94745638-94745657 MsG0580029285.01.T01:three_prime_UTR 50.0%
AGGCTTTACCTTCATCCTGG+TGG - Chr5:94747544-94747563 MsG0580029285.01.T01:CDS 50.0%
CCCCGTAAGCATAGTCCAAT+TGG - Chr5:94746364-94746383 MsG0580029285.01.T01:CDS 50.0%
CTGATCCGAAGAAACCAGCA+GGG - Chr5:94745639-94745658 MsG0580029285.01.T01:three_prime_UTR 50.0%
GAAGTGTGGAAGAGAGTGAG+AGG + Chr5:94746615-94746634 None:intergenic 50.0%
GCAGTGTTATATGGCCCAGA+AGG - Chr5:94743595-94743614 MsG0580029285.01.T01:intron 50.0%
GCATATGGGGCTAATGACCA+TGG + Chr5:94744902-94744921 None:intergenic 50.0%
GCATTGTTATACGTAGGGGC+CGG - Chr5:94746396-94746415 MsG0580029285.01.T01:intron 50.0%
GTCTGCACATACAGGTTGTG+AGG - Chr5:94747759-94747778 MsG0580029285.01.T01:five_prime_UTR 50.0%
GTGAAGCCAGGCCATAGAAT+AGG - Chr5:94744348-94744367 MsG0580029285.01.T01:intron 50.0%
GTGGAGATCGGTGTGTTCAA+CGG + Chr5:94743126-94743145 None:intergenic 50.0%
GTTATCTTGGCCATGGAGCA+TGG - Chr5:94746010-94746029 MsG0580029285.01.T01:intron 50.0%
GTTGCAGTCATAGCTGATCC+TGG - Chr5:94745599-94745618 MsG0580029285.01.T01:three_prime_UTR 50.0%
TAGCTCATGCAGCCACCATA+AGG - Chr5:94745672-94745691 MsG0580029285.01.T01:three_prime_UTR 50.0%
TGATCCGAAGAAACCAGCAG+GGG - Chr5:94745640-94745659 MsG0580029285.01.T01:three_prime_UTR 50.0%
TGGAAGAGAGTGAGAGGAGA+GGG + Chr5:94746609-94746628 None:intergenic 50.0%
! GGGTTTAACTTTCCACTCCG+AGG + Chr5:94744734-94744753 None:intergenic 50.0%
!! CTGTTTCGGGTTGACTTCAC+AGG - Chr5:94745269-94745288 MsG0580029285.01.T01:intron 50.0%
!! TGTGATCGAACCGACTTGCT+TGG - Chr5:94747316-94747335 MsG0580029285.01.T01:intron 50.0%
ACATCGCAGATGCTGAGTCC+AGG + Chr5:94744677-94744696 None:intergenic 55.0%
ATCCGAAGAAACCAGCAGGG+GGG - Chr5:94745642-94745661 MsG0580029285.01.T01:three_prime_UTR 55.0%
GATCCGAAGAAACCAGCAGG+GGG - Chr5:94745641-94745660 MsG0580029285.01.T01:three_prime_UTR 55.0%
GCAGTCATAGCTGATCCTGG+AGG - Chr5:94745602-94745621 MsG0580029285.01.T01:three_prime_UTR 55.0%
GCTCCATTCCACCAGGATGA+AGG + Chr5:94747555-94747574 None:intergenic 55.0%
GGAAGAGAGTGAGAGGAGAG+GGG + Chr5:94746608-94746627 None:intergenic 55.0%
GTCATAGCTGATCCTGGAGG+TGG - Chr5:94745605-94745624 MsG0580029285.01.T01:three_prime_UTR 55.0%
GTGCTGGGAAAGGCTAAGAG+TGG - Chr5:94743751-94743770 MsG0580029285.01.T01:intron 55.0%
GTGGAAGAGAGTGAGAGGAG+AGG + Chr5:94746610-94746629 None:intergenic 55.0%
! CGGGTTGACTTCACAGGAAG+AGG - Chr5:94745275-94745294 MsG0580029285.01.T01:intron 55.0%
! CTCTCTGGTTTGCAGTGCCT+CGG - Chr5:94744714-94744733 MsG0580029285.01.T01:intron 55.0%
GATCGGTGTGTTCAACGGCG+AGG + Chr5:94743121-94743140 None:intergenic 60.0%
GTGTTCAACGGCGAGGTCGA+CGG + Chr5:94743114-94743133 None:intergenic 60.0%
TCCTGGTGGAATGGAGCCAG+AGG - Chr5:94747558-94747577 MsG0580029285.01.T01:CDS 60.0%
! ACCTCTGGCTCCATTCCACC+AGG + Chr5:94747562-94747581 None:intergenic 60.0%
! TGGTTTGCAGTGCCTCGGAG+TGG - Chr5:94744719-94744738 MsG0580029285.01.T01:intron 60.0%
!! AGGAGAGTTTGCTGAGCGCC+AGG - Chr5:94745295-94745314 MsG0580029285.01.T01:intron 60.0%
!! TGCCCCCCTGCTGGTTTCTT+CGG + Chr5:94745647-94745666 None:intergenic 60.0%
TTCAACGGCGAGGTCGACGG+TGG + Chr5:94743111-94743130 None:intergenic 65.0%
CGACGGTGGAGACGACGAGG+TGG + Chr5:94743097-94743116 None:intergenic 70.0%
CGGTGGAGACGACGAGGTGG+CGG + Chr5:94743094-94743113 None:intergenic 70.0%
GCTAGCACATGCCCCCCTGC+TGG + Chr5:94745656-94745675 None:intergenic 70.0%
GGTCGACGGTGGAGACGACG+AGG + Chr5:94743100-94743119 None:intergenic 70.0%
! GACGACGAGGTGGCGGTGTG+AGG + Chr5:94743087-94743106 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
Chr5 gene 94742997 94748620 94742997 ID=MsG0580029285.01;Name=MsG0580029285.01
Chr5 mRNA 94742997 94748620 94742997 ID=MsG0580029285.01.T01;Parent=MsG0580029285.01;Name=MsG0580029285.01.T01;_AED=0.38;_eAED=0.39;_QI=368|0.9|0.90|1|0.3|0.27|11|1197|163
Chr5 exon 94742997 94743302 94742997 ID=MsG0580029285.01.T01:exon:18228;Parent=MsG0580029285.01.T01
Chr5 exon 94743762 94743844 94743762 ID=MsG0580029285.01.T01:exon:18227;Parent=MsG0580029285.01.T01
Chr5 exon 94744038 94744336 94744038 ID=MsG0580029285.01.T01:exon:18226;Parent=MsG0580029285.01.T01
Chr5 exon 94744417 94744473 94744417 ID=MsG0580029285.01.T01:exon:18225;Parent=MsG0580029285.01.T01
Chr5 exon 94745393 94746011 94745393 ID=MsG0580029285.01.T01:exon:18224;Parent=MsG0580029285.01.T01
Chr5 exon 94746136 94746214 94746136 ID=MsG0580029285.01.T01:exon:18223;Parent=MsG0580029285.01.T01
Chr5 exon 94746301 94746401 94746301 ID=MsG0580029285.01.T01:exon:18222;Parent=MsG0580029285.01.T01
Chr5 exon 94746824 94746888 94746824 ID=MsG0580029285.01.T01:exon:18221;Parent=MsG0580029285.01.T01
Chr5 exon 94747522 94747593 94747522 ID=MsG0580029285.01.T01:exon:18220;Parent=MsG0580029285.01.T01
Chr5 exon 94747725 94747875 94747725 ID=MsG0580029285.01.T01:exon:18219;Parent=MsG0580029285.01.T01
Chr5 exon 94748396 94748620 94748396 ID=MsG0580029285.01.T01:exon:18218;Parent=MsG0580029285.01.T01
Chr5 five_prime_UTR 94748396 94748620 94748396 ID=MsG0580029285.01.T01:five_prime_utr;Parent=MsG0580029285.01.T01
Chr5 five_prime_UTR 94747733 94747875 94747733 ID=MsG0580029285.01.T01:five_prime_utr;Parent=MsG0580029285.01.T01
Chr5 CDS 94747725 94747732 94747725 ID=MsG0580029285.01.T01:cds;Parent=MsG0580029285.01.T01
Chr5 CDS 94747522 94747593 94747522 ID=MsG0580029285.01.T01:cds;Parent=MsG0580029285.01.T01
Chr5 CDS 94746824 94746888 94746824 ID=MsG0580029285.01.T01:cds;Parent=MsG0580029285.01.T01
Chr5 CDS 94746301 94746401 94746301 ID=MsG0580029285.01.T01:cds;Parent=MsG0580029285.01.T01
Chr5 CDS 94746136 94746214 94746136 ID=MsG0580029285.01.T01:cds;Parent=MsG0580029285.01.T01
Chr5 CDS 94745845 94746011 94745845 ID=MsG0580029285.01.T01:cds;Parent=MsG0580029285.01.T01
Chr5 three_prime_UTR 94745393 94745844 94745393 ID=MsG0580029285.01.T01:three_prime_utr;Parent=MsG0580029285.01.T01
Chr5 three_prime_UTR 94744417 94744473 94744417 ID=MsG0580029285.01.T01:three_prime_utr;Parent=MsG0580029285.01.T01
Chr5 three_prime_UTR 94744038 94744336 94744038 ID=MsG0580029285.01.T01:three_prime_utr;Parent=MsG0580029285.01.T01
Chr5 three_prime_UTR 94743762 94743844 94743762 ID=MsG0580029285.01.T01:three_prime_utr;Parent=MsG0580029285.01.T01
Chr5 three_prime_UTR 94742997 94743302 94742997 ID=MsG0580029285.01.T01:three_prime_utr;Parent=MsG0580029285.01.T01
Gene Sequence

>MsG0580029285.01.T01

ATGAAAAGGTTGGAGTGGACATTTTGTATCAAAGAAAGGTACCATTTTATAATCCCAACAGATGATTATGTGCGTGTCAGTGCCTCGGAGTGGAAAGTTAAACCCTTAAATGAAGAAGCTCTTCATGATCAGAGTCATCTAGAAAAGTTAACTGAATATTTTTTTTTTTTTTTGCAGATTGTGCATTCTGTGATTGCTCTGTTTCGGGTTGACTTCACAGGAAGAGGAGAGTTTGCTGAGCGCCAGCAAAAATTGGCACAGATGCTTTCTCGATTGATCAAGATAGCTGAGGAATTCAACGTTGCTATTTATATGACAAATCAAGTCATAGCTGATCCTGGAGGTGGTATGTTCATTACTGATCCGAAGAAACCAGCAGGGGGGCATGTGCTAGCTCATGCAGCCACCATAAGGCTTTGTTTGTATCTTATATTTATGAGAATACATGTTTGCTATTATTGTGTGATTAAGCTAGATTTTATGATAATATGA
Protein sequence

>MsG0580029285.01.T01

MKRLEWTFCIKERYHFIIPTDDYVRVSASEWKVKPLNEEALHDQSHLEKLTEYFFFFLQIVHSVIALFRVDFTGRGEFAERQQKLAQMLSRLIKIAEEFNVAIYMTNQVIADPGGGMFITDPKKPAGGHVLAHAATIRLCLYLIFMRIHVCYYCVIKLDFMII*