Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsG0580029409.01.T02 | XP_003616918.1 | 91.304 | 92 | 8 | 0 | 1 | 92 | 426 | 517 | 2.02E-52 | 181 |
MsG0580029409.01.T03 | XP_003616918.1 | 91.304 | 92 | 8 | 0 | 1 | 92 | 426 | 517 | 2.87E-52 | 181 |
MsG0580029409.01.T01 | XP_003616918.1 | 94.624 | 93 | 4 | 1 | 1 | 93 | 426 | 517 | 5.80E-55 | 188 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsG0580029409.01.T01 | O48766 | 73.913 | 69 | 17 | 1 | 2 | 70 | 435 | 502 | 2.48E-31 | 117 |
MsG0580029409.01.T02 | O48766 | 72.059 | 68 | 19 | 0 | 2 | 69 | 435 | 502 | 5.74E-30 | 114 |
MsG0580029409.01.T03 | O48766 | 69.118 | 68 | 21 | 0 | 2 | 69 | 435 | 502 | 4.45E-28 | 108 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsG0580029409.01.T01 | G7K7J2 | 94.624 | 93 | 4 | 1 | 1 | 93 | 426 | 517 | 2.77e-55 | 188 |
MsG0580029409.01.T02 | I3SFF5 | 91.304 | 92 | 8 | 0 | 1 | 92 | 426 | 517 | 1.01e-52 | 181 |
MsG0580029409.01.T03 | G7K7J2 | 91.304 | 92 | 8 | 0 | 1 | 92 | 426 | 517 | 1.37e-52 | 181 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MsG0580024908.01 | MsG0580029409.01 | 0.830529 | 2.790317e-55 | 2.947496e-52 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsG0580029409.01.T02 | MTR_5g085730 | 91.304 | 92 | 8 | 0 | 1 | 92 | 426 | 517 | 2.45e-56 | 181 |
MsG0580029409.01.T02 | MTR_3g080190 | 71.429 | 91 | 26 | 0 | 1 | 91 | 435 | 525 | 2.33e-43 | 147 |
MsG0580029409.01.T02 | MTR_5g093590 | 64.865 | 74 | 26 | 0 | 2 | 75 | 431 | 504 | 2.19e-27 | 103 |
MsG0580029409.01.T02 | MTR_8g099410 | 47.826 | 69 | 36 | 0 | 1 | 69 | 421 | 489 | 1.33e-17 | 76.3 |
MsG0580029409.01.T02 | MTR_8g099410 | 47.826 | 69 | 36 | 0 | 1 | 69 | 421 | 489 | 1.40e-17 | 76.3 |
MsG0580029409.01.T02 | MTR_4g074960 | 48.387 | 62 | 32 | 0 | 10 | 71 | 431 | 492 | 1.13e-15 | 70.9 |
MsG0580029409.01.T02 | MTR_1g088190 | 47.059 | 68 | 35 | 1 | 6 | 73 | 414 | 480 | 2.97e-13 | 63.9 |
MsG0580029409.01.T02 | MTR_7g108925 | 43.056 | 72 | 40 | 1 | 2 | 73 | 130 | 200 | 3.23e-13 | 62.8 |
MsG0580029409.01.T02 | MTR_3g080810 | 50.000 | 62 | 30 | 1 | 10 | 71 | 433 | 493 | 2.52e-12 | 61.2 |
MsG0580029409.01.T02 | MTR_5g009970 | 35.211 | 71 | 46 | 0 | 2 | 72 | 255 | 325 | 6.09e-11 | 57.4 |
MsG0580029409.01.T02 | MTR_5g009970 | 35.211 | 71 | 46 | 0 | 2 | 72 | 323 | 393 | 7.51e-11 | 57.0 |
MsG0580029409.01.T02 | MTR_5g009970 | 35.211 | 71 | 46 | 0 | 2 | 72 | 350 | 420 | 9.87e-11 | 56.6 |
MsG0580029409.01.T03 | MTR_5g085730 | 91.304 | 92 | 8 | 0 | 1 | 92 | 426 | 517 | 3.47e-56 | 181 |
MsG0580029409.01.T03 | MTR_3g080190 | 69.231 | 91 | 28 | 0 | 1 | 91 | 435 | 525 | 2.00e-40 | 139 |
MsG0580029409.01.T03 | MTR_5g093590 | 62.162 | 74 | 28 | 0 | 2 | 75 | 431 | 504 | 3.80e-25 | 97.4 |
MsG0580029409.01.T03 | MTR_8g099410 | 44.928 | 69 | 38 | 0 | 1 | 69 | 421 | 489 | 1.23e-15 | 70.9 |
MsG0580029409.01.T03 | MTR_4g074960 | 50.000 | 60 | 30 | 0 | 10 | 69 | 431 | 490 | 4.92e-15 | 68.9 |
MsG0580029409.01.T03 | MTR_8g099410 | 44.928 | 69 | 38 | 0 | 1 | 69 | 421 | 489 | 5.55e-15 | 68.9 |
MsG0580029409.01.T03 | MTR_7g108925 | 43.056 | 72 | 40 | 1 | 2 | 73 | 130 | 200 | 6.17e-14 | 64.7 |
MsG0580029409.01.T03 | MTR_1g088190 | 47.059 | 68 | 35 | 1 | 6 | 73 | 414 | 480 | 9.13e-14 | 65.5 |
MsG0580029409.01.T03 | MTR_3g080810 | 59.574 | 47 | 19 | 0 | 25 | 71 | 447 | 493 | 1.88e-13 | 64.3 |
MsG0580029409.01.T03 | MTR_4g035955 | 46.774 | 62 | 32 | 1 | 10 | 71 | 406 | 466 | 1.98e-12 | 61.6 |
MsG0580029409.01.T03 | MTR_4g035975 | 44.828 | 58 | 32 | 0 | 14 | 71 | 432 | 489 | 3.24e-12 | 60.8 |
MsG0580029409.01.T03 | MTR_4g035930 | 46.774 | 62 | 32 | 1 | 10 | 71 | 407 | 467 | 5.56e-12 | 60.1 |
MsG0580029409.01.T03 | MTR_5g009970 | 36.620 | 71 | 45 | 0 | 2 | 72 | 350 | 420 | 7.66e-12 | 59.7 |
MsG0580029409.01.T03 | MTR_5g009970 | 36.620 | 71 | 45 | 0 | 2 | 72 | 323 | 393 | 8.02e-12 | 59.7 |
MsG0580029409.01.T03 | MTR_5g009970 | 36.620 | 71 | 45 | 0 | 2 | 72 | 255 | 325 | 9.45e-12 | 59.3 |
MsG0580029409.01.T03 | MTR_8g104820 | 45.070 | 71 | 37 | 2 | 2 | 71 | 421 | 490 | 1.02e-11 | 59.7 |
MsG0580029409.01.T03 | MTR_5g009970 | 36.620 | 71 | 45 | 0 | 2 | 72 | 424 | 494 | 1.37e-11 | 59.3 |
MsG0580029409.01.T03 | MTR_5g010000 | 36.620 | 71 | 45 | 0 | 2 | 72 | 423 | 493 | 6.99e-11 | 57.0 |
MsG0580029409.01.T03 | MTR_3g117500 | 39.437 | 71 | 42 | 1 | 2 | 72 | 416 | 485 | 8.98e-11 | 57.0 |
MsG0580029409.01.T01 | MTR_5g085730 | 94.624 | 93 | 4 | 1 | 1 | 93 | 426 | 517 | 7.03e-59 | 188 |
MsG0580029409.01.T01 | MTR_3g080190 | 72.826 | 92 | 24 | 1 | 1 | 92 | 435 | 525 | 1.21e-43 | 148 |
MsG0580029409.01.T01 | MTR_5g093590 | 66.667 | 75 | 24 | 1 | 2 | 76 | 431 | 504 | 2.67e-28 | 106 |
MsG0580029409.01.T01 | MTR_8g099410 | 47.143 | 70 | 36 | 1 | 1 | 70 | 421 | 489 | 5.97e-17 | 74.3 |
MsG0580029409.01.T01 | MTR_4g074960 | 50.794 | 63 | 30 | 1 | 10 | 72 | 431 | 492 | 8.07e-17 | 73.9 |
MsG0580029409.01.T01 | MTR_8g099410 | 45.833 | 72 | 38 | 1 | 1 | 72 | 421 | 491 | 2.55e-16 | 72.8 |
MsG0580029409.01.T01 | MTR_7g108925 | 42.466 | 73 | 40 | 1 | 2 | 74 | 130 | 200 | 2.21e-15 | 68.6 |
MsG0580029409.01.T01 | MTR_1g088190 | 46.377 | 69 | 35 | 1 | 6 | 74 | 414 | 480 | 1.25e-14 | 67.8 |
MsG0580029409.01.T01 | MTR_3g080810 | 49.206 | 63 | 30 | 1 | 10 | 72 | 433 | 493 | 1.72e-13 | 64.7 |
MsG0580029409.01.T01 | MTR_5g009970 | 38.889 | 72 | 43 | 1 | 2 | 73 | 255 | 325 | 1.65e-12 | 61.6 |
MsG0580029409.01.T01 | MTR_5g009970 | 38.889 | 72 | 43 | 1 | 2 | 73 | 323 | 393 | 2.08e-12 | 61.6 |
MsG0580029409.01.T01 | MTR_5g009970 | 38.889 | 72 | 43 | 1 | 2 | 73 | 424 | 494 | 2.82e-12 | 61.2 |
MsG0580029409.01.T01 | MTR_5g009970 | 38.889 | 72 | 43 | 1 | 2 | 73 | 350 | 420 | 2.94e-12 | 61.2 |
MsG0580029409.01.T01 | MTR_4g035975 | 48.077 | 52 | 27 | 0 | 21 | 72 | 438 | 489 | 1.23e-11 | 59.3 |
MsG0580029409.01.T01 | MTR_4g035955 | 46.032 | 63 | 32 | 1 | 10 | 72 | 406 | 466 | 1.89e-11 | 58.9 |
MsG0580029409.01.T01 | MTR_8g104820 | 44.444 | 72 | 37 | 2 | 2 | 72 | 421 | 490 | 2.27e-11 | 58.5 |
MsG0580029409.01.T01 | MTR_3g113720 | 45.312 | 64 | 31 | 2 | 11 | 73 | 459 | 519 | 3.87e-11 | 57.8 |
MsG0580029409.01.T01 | MTR_1g037340 | 40.000 | 70 | 40 | 2 | 1 | 70 | 412 | 479 | 6.62e-11 | 57.4 |
MsG0580029409.01.T01 | MTR_3g117500 | 38.889 | 72 | 42 | 1 | 2 | 73 | 416 | 485 | 9.50e-11 | 57.0 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsG0580029409.01.T02 | AT2G32990 | 72.059 | 68 | 19 | 0 | 2 | 69 | 435 | 502 | 5.85e-31 | 114 |
MsG0580029409.01.T02 | AT4G11050 | 48.611 | 72 | 37 | 0 | 1 | 72 | 419 | 490 | 4.12e-19 | 80.5 |
MsG0580029409.01.T02 | AT4G11050 | 48.611 | 72 | 37 | 0 | 1 | 72 | 419 | 490 | 4.12e-19 | 80.5 |
MsG0580029409.01.T02 | AT4G11050 | 48.611 | 72 | 37 | 0 | 1 | 72 | 419 | 490 | 4.34e-19 | 80.5 |
MsG0580029409.01.T02 | AT1G64390 | 49.275 | 69 | 35 | 0 | 1 | 69 | 418 | 486 | 1.13e-18 | 79.3 |
MsG0580029409.01.T02 | AT2G44550 | 50.725 | 69 | 34 | 0 | 1 | 69 | 419 | 487 | 1.86e-17 | 75.9 |
MsG0580029409.01.T02 | AT1G48930 | 55.000 | 60 | 27 | 0 | 10 | 69 | 432 | 491 | 5.90e-17 | 74.3 |
MsG0580029409.01.T02 | AT2G44540 | 44.444 | 72 | 40 | 0 | 1 | 72 | 420 | 491 | 2.47e-15 | 69.7 |
MsG0580029409.01.T02 | AT4G02290 | 48.438 | 64 | 32 | 1 | 10 | 73 | 337 | 399 | 5.01e-12 | 60.5 |
MsG0580029409.01.T02 | AT4G02290 | 48.438 | 64 | 32 | 1 | 10 | 73 | 449 | 511 | 5.54e-12 | 60.5 |
MsG0580029409.01.T02 | AT2G44570 | 38.028 | 71 | 44 | 0 | 1 | 71 | 421 | 491 | 2.50e-11 | 58.5 |
MsG0580029409.01.T03 | AT2G32990 | 69.118 | 68 | 21 | 0 | 2 | 69 | 435 | 502 | 4.53e-29 | 108 |
MsG0580029409.01.T03 | AT4G11050 | 44.444 | 72 | 40 | 0 | 1 | 72 | 419 | 490 | 1.69e-16 | 73.2 |
MsG0580029409.01.T03 | AT4G11050 | 44.444 | 72 | 40 | 0 | 1 | 72 | 419 | 490 | 1.69e-16 | 73.2 |
MsG0580029409.01.T03 | AT1G64390 | 44.928 | 69 | 38 | 0 | 1 | 69 | 418 | 486 | 5.59e-16 | 71.6 |
MsG0580029409.01.T03 | AT4G11050 | 44.444 | 72 | 40 | 0 | 1 | 72 | 419 | 490 | 7.93e-16 | 71.2 |
MsG0580029409.01.T03 | AT2G44550 | 49.275 | 69 | 35 | 0 | 1 | 69 | 419 | 487 | 8.14e-16 | 71.2 |
MsG0580029409.01.T03 | AT1G48930 | 53.333 | 60 | 28 | 0 | 10 | 69 | 432 | 491 | 1.41e-15 | 70.5 |
MsG0580029409.01.T03 | AT2G44540 | 43.056 | 72 | 41 | 0 | 1 | 72 | 420 | 491 | 8.94e-14 | 65.5 |
MsG0580029409.01.T03 | AT1G70710 | 45.714 | 70 | 37 | 1 | 2 | 71 | 417 | 485 | 9.03e-14 | 65.5 |
MsG0580029409.01.T03 | AT4G02290 | 48.438 | 64 | 32 | 1 | 10 | 73 | 337 | 399 | 7.03e-13 | 62.8 |
MsG0580029409.01.T03 | AT4G02290 | 48.438 | 64 | 32 | 1 | 10 | 73 | 449 | 511 | 7.30e-13 | 62.8 |
MsG0580029409.01.T03 | AT1G23210 | 48.387 | 62 | 31 | 1 | 10 | 71 | 425 | 485 | 1.51e-12 | 62.0 |
MsG0580029409.01.T03 | AT4G39000 | 45.161 | 62 | 33 | 1 | 10 | 71 | 426 | 486 | 3.26e-11 | 58.2 |
MsG0580029409.01.T03 | AT1G22880 | 40.323 | 62 | 36 | 1 | 10 | 71 | 334 | 394 | 3.93e-11 | 57.8 |
MsG0580029409.01.T03 | AT1G22880 | 40.323 | 62 | 36 | 1 | 10 | 71 | 418 | 478 | 4.11e-11 | 57.8 |
MsG0580029409.01.T03 | AT2G44570 | 39.437 | 71 | 43 | 0 | 1 | 71 | 421 | 491 | 5.73e-11 | 57.4 |
MsG0580029409.01.T01 | AT2G32990 | 73.913 | 69 | 17 | 1 | 2 | 70 | 435 | 502 | 2.52e-32 | 117 |
MsG0580029409.01.T01 | AT2G44550 | 52.857 | 70 | 32 | 1 | 1 | 70 | 419 | 487 | 5.71e-18 | 77.4 |
MsG0580029409.01.T01 | AT4G11050 | 49.315 | 73 | 36 | 1 | 1 | 73 | 419 | 490 | 5.85e-18 | 77.4 |
MsG0580029409.01.T01 | AT4G11050 | 49.315 | 73 | 36 | 1 | 1 | 73 | 419 | 490 | 5.99e-18 | 77.4 |
MsG0580029409.01.T01 | AT4G11050 | 49.315 | 73 | 36 | 1 | 1 | 73 | 419 | 490 | 5.99e-18 | 77.4 |
MsG0580029409.01.T01 | AT1G64390 | 50.000 | 70 | 34 | 1 | 1 | 70 | 418 | 486 | 1.63e-17 | 76.3 |
MsG0580029409.01.T01 | AT1G48930 | 55.738 | 61 | 26 | 1 | 10 | 70 | 432 | 491 | 1.80e-17 | 75.9 |
MsG0580029409.01.T01 | AT2G44540 | 46.575 | 73 | 38 | 1 | 1 | 73 | 420 | 491 | 7.23e-16 | 71.2 |
MsG0580029409.01.T01 | AT4G02290 | 47.692 | 65 | 32 | 1 | 10 | 74 | 337 | 399 | 1.73e-13 | 64.7 |
MsG0580029409.01.T01 | AT4G02290 | 47.692 | 65 | 32 | 1 | 10 | 74 | 449 | 511 | 1.79e-13 | 64.7 |
MsG0580029409.01.T01 | AT1G70710 | 47.619 | 63 | 31 | 1 | 10 | 72 | 425 | 485 | 9.72e-13 | 62.4 |
MsG0580029409.01.T01 | AT2G44570 | 40.278 | 72 | 42 | 1 | 1 | 72 | 421 | 491 | 4.95e-12 | 60.5 |
MsG0580029409.01.T01 | AT4G39000 | 45.161 | 62 | 32 | 1 | 11 | 72 | 427 | 486 | 9.60e-12 | 59.7 |
MsG0580029409.01.T01 | AT1G22880 | 39.683 | 63 | 36 | 1 | 10 | 72 | 334 | 394 | 1.85e-11 | 58.9 |
MsG0580029409.01.T01 | AT1G22880 | 39.683 | 63 | 36 | 1 | 10 | 72 | 418 | 478 | 1.90e-11 | 58.9 |
MsG0580029409.01.T01 | AT1G23210 | 46.032 | 63 | 32 | 1 | 10 | 72 | 425 | 485 | 2.94e-11 | 58.2 |
MsG0580029409.01.T01 | AT1G02800 | 45.902 | 61 | 31 | 1 | 10 | 70 | 438 | 496 | 3.65e-11 | 58.2 |
MsG0580029409.01.T01 | AT4G38990 | 41.270 | 63 | 35 | 1 | 10 | 72 | 429 | 489 | 5.66e-11 | 57.4 |
Find 24 sgRNAs with CRISPR-Local
Find 37 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
AAGGAGAATAAAGGGTTTAT+TGG | 0.210859 | 5:+96640278 | MsG0580029409.01.T03:CDS |
TTATATATTTATTTATTTAA+AGG | 0.217547 | 5:-96640686 | None:intergenic |
TCAAAATTGTCTTGCCAATC+AGG | 0.280992 | 5:-96640529 | None:intergenic |
ATGTCATATAAGGAGAATAA+AGG | 0.332352 | 5:+96640269 | MsG0580029409.01.T03:CDS |
AAAGCTCCAGCCAAAACATT+AGG | 0.332505 | 5:-96640496 | None:intergenic |
GTACTCAAGGGTATGATAAT+TGG | 0.334494 | 5:+96640303 | MsG0580029409.01.T03:intron |
AGATCCTAACCCTAATGTTT+TGG | 0.349200 | 5:+96640486 | MsG0580029409.01.T03:CDS |
ACATGATTGTAATTCACTTT+TGG | 0.357266 | 5:+96640657 | MsG0580029409.01.T03:CDS |
CTTTGGTTGGTGGTCCTGAT+TGG | 0.363936 | 5:+96640515 | MsG0580029409.01.T03:CDS |
AGCATCAATTATGTCATATA+AGG | 0.370317 | 5:+96640259 | None:intergenic |
TGTCATATAAGGAGAATAAA+GGG | 0.398718 | 5:+96640270 | MsG0580029409.01.T03:CDS |
AAGCTCCAGCCAAAACATTA+GGG | 0.439990 | 5:-96640495 | None:intergenic |
CCAGCCAAAACATTAGGGTT+AGG | 0.480951 | 5:-96640490 | None:intergenic |
TTGGCTGGAGCTTTGGTTGG+TGG | 0.492049 | 5:+96640505 | MsG0580029409.01.T03:CDS |
GGGTTTATTGGATGTACTCA+AGG | 0.504462 | 5:+96640290 | MsG0580029409.01.T03:CDS |
ATGATAATTGGTACTCCCTC+CGG | 0.526621 | 5:+96640315 | MsG0580029409.01.T03:intron |
TTCTTATATTTGAGACCGGA+GGG | 0.544638 | 5:-96640330 | None:intergenic |
TTCTTATATTTGAGACCGGA+GGG | 0.544638 | 5:+96640450 | MsG0580029409.01.T03:intron |
CTTCCTTGCGATACTCCCTC+CGG | 0.556151 | 5:-96640465 | None:intergenic |
GCATATTGAAGATAATAAGA+TGG | 0.583410 | 5:+96640633 | MsG0580029409.01.T03:CDS |
TTTCTTATATTTGAGACCGG+AGG | 0.599772 | 5:-96640331 | None:intergenic |
TTTCTTATATTTGAGACCGG+AGG | 0.599772 | 5:+96640449 | MsG0580029409.01.T03:intron |
GGTTTATTGGATGTACTCAA+GGG | 0.620477 | 5:+96640291 | MsG0580029409.01.T03:CDS |
AGACCGGAGGGAGTATCGCA+AGG | 0.625220 | 5:+96640462 | MsG0580029409.01.T03:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | TAAGAAAATATTCCTTTTTT+AGG | - | Chr5:96640366-96640347 | None:intergenic | 15.0% |
!!! | AAGACAATTTTGAAGATAAA+AGG | + | Chr5:96640539-96640558 | MsG0580029409.01.T03:CDS | 20.0% |
!!! | TATTTTCTTATATTTGAGAC+CGG | + | Chr5:96640446-96640465 | MsG0580029409.01.T03:intron | 20.0% |
!!! | TATTTTCTTATATTTGAGAC+CGG | - | Chr5:96640465-96640446 | None:intergenic | 20.0% |
! | ATGTCATATAAGGAGAATAA+AGG | + | Chr5:96640269-96640288 | MsG0580029409.01.T03:CDS | 25.0% |
! | GCATATTGAAGATAATAAGA+TGG | + | Chr5:96640633-96640652 | MsG0580029409.01.T03:CDS | 25.0% |
! | TGTCATATAAGGAGAATAAA+GGG | + | Chr5:96640270-96640289 | MsG0580029409.01.T03:CDS | 25.0% |
!! | ACATGATTGTAATTCACTTT+TGG | + | Chr5:96640657-96640676 | MsG0580029409.01.T03:CDS | 25.0% |
AAGGAGAATAAAGGGTTTAT+TGG | + | Chr5:96640278-96640297 | MsG0580029409.01.T03:CDS | 30.0% | |
CATTGAGTAGTTAATGTATC+TGG | - | Chr5:96640411-96640430 | None:intergenic | 30.0% | |
CTACTCAATGAACCTAAAAA+AGG | + | Chr5:96640421-96640440 | MsG0580029409.01.T03:intron | 30.0% | |
TTGCAAAAAGAGCTACTAAA+GGG | - | Chr5:96640606-96640625 | None:intergenic | 30.0% | |
GGTTTATTGGATGTACTCAA+GGG | + | Chr5:96640291-96640310 | MsG0580029409.01.T03:CDS | 35.0% | |
GTTGCAAAAAGAGCTACTAA+AGG | - | Chr5:96640607-96640626 | None:intergenic | 35.0% | |
TCAAAATTGTCTTGCCAATC+AGG | - | Chr5:96640532-96640551 | None:intergenic | 35.0% | |
TGCAAAAAGAGCTACTAAAG+GGG | - | Chr5:96640605-96640624 | None:intergenic | 35.0% | |
TGTATCTGGTCTACATTGTA+AGG | - | Chr5:96640397-96640416 | None:intergenic | 35.0% | |
! | AGATCCTAACCCTAATGTTT+TGG | + | Chr5:96640486-96640505 | MsG0580029409.01.T03:CDS | 35.0% |
! | GAGCAATTTTATGCAAACTG+AGG | + | Chr5:96640561-96640580 | MsG0580029409.01.T03:CDS | 35.0% |
! | GTACTCAAGGGTATGATAAT+TGG | + | Chr5:96640303-96640322 | MsG0580029409.01.T03:intron | 35.0% |
! | TTCTTATATTTGAGACCGGA+GGG | + | Chr5:96640450-96640469 | MsG0580029409.01.T03:intron | 35.0% |
! | TTCTTATATTTGAGACCGGA+GGG | - | Chr5:96640469-96640450 | None:intergenic | 35.0% |
! | TTTCTTATATTTGAGACCGG+AGG | + | Chr5:96640449-96640468 | MsG0580029409.01.T03:intron | 35.0% |
! | TTTCTTATATTTGAGACCGG+AGG | - | Chr5:96640468-96640449 | None:intergenic | 35.0% |
AAAGCTCCAGCCAAAACATT+AGG | - | Chr5:96640499-96640518 | None:intergenic | 40.0% | |
AAGCTCCAGCCAAAACATTA+GGG | - | Chr5:96640498-96640517 | None:intergenic | 40.0% | |
ATGATAATTGGTACTCCCTC+CGG | + | Chr5:96640315-96640334 | MsG0580029409.01.T03:intron | 40.0% | |
GGGTTTATTGGATGTACTCA+AGG | + | Chr5:96640290-96640309 | MsG0580029409.01.T03:CDS | 40.0% | |
!!! | TAATGTTTTGGCTGGAGCTT+TGG | + | Chr5:96640498-96640517 | MsG0580029409.01.T03:CDS | 40.0% |
CCAGCCAAAACATTAGGGTT+AGG | - | Chr5:96640493-96640512 | None:intergenic | 45.0% | |
!!! | CCTAACCCTAATGTTTTGGC+TGG | + | Chr5:96640490-96640509 | MsG0580029409.01.T03:CDS | 45.0% |
!! | TTATTTAATGAATATAAAAA+AGG | - | Chr5:96640362-96640381 | None:intergenic | 5.0% |
!! | CTTTGGTTGGTGGTCCTGAT+TGG | + | Chr5:96640515-96640534 | MsG0580029409.01.T03:CDS | 50.0% |
!!! | GTTTTGGCTGGAGCTTTGGT+TGG | + | Chr5:96640502-96640521 | MsG0580029409.01.T03:CDS | 50.0% |
CTTCCTTGCGATACTCCCTC+CGG | - | Chr5:96640468-96640487 | None:intergenic | 55.0% | |
! | TTGGCTGGAGCTTTGGTTGG+TGG | + | Chr5:96640505-96640524 | MsG0580029409.01.T03:CDS | 55.0% |
!! | AGACCGGAGGGAGTATCGCA+AGG | + | Chr5:96640462-96640481 | MsG0580029409.01.T03:CDS | 60.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
Chr5 | gene | 96640269 | 96640696 | 96640269 | ID=MsG0580029409.01;Name=MsG0580029409.01 |
Chr5 | mRNA | 96640269 | 96640696 | 96640269 | ID=MsG0580029409.01.T01;Parent=MsG0580029409.01;Name=MsG0580029409.01.T01;_AED=0.22;_eAED=0.22;_QI=0|0|0|1|0|0|2|0|93 |
Chr5 | exon | 96640269 | 96640324 | 96640269 | ID=MsG0580029409.01.T01:exon:24549;Parent=MsG0580029409.01.T01 |
Chr5 | exon | 96640471 | 96640696 | 96640471 | ID=MsG0580029409.01.T01:exon:24550;Parent=MsG0580029409.01.T01 |
Chr5 | CDS | 96640269 | 96640324 | 96640269 | ID=MsG0580029409.01.T01:cds;Parent=MsG0580029409.01.T01 |
Chr5 | CDS | 96640471 | 96640696 | 96640471 | ID=MsG0580029409.01.T01:cds;Parent=MsG0580029409.01.T01 |
Chr5 | mRNA | 96640269 | 96640696 | 96640269 | ID=MsG0580029409.01.T02;Parent=MsG0580029409.01;Name=MsG0580029409.01.T02;_AED=0.23;_eAED=0.23;_QI=0|0|0|1|0|0|2|0|92 |
Chr5 | exon | 96640269 | 96640345 | 96640269 | ID=MsG0580029409.01.T02:exon:24551;Parent=MsG0580029409.01.T02 |
Chr5 | exon | 96640495 | 96640696 | 96640495 | ID=MsG0580029409.01.T02:exon:24552;Parent=MsG0580029409.01.T02 |
Chr5 | CDS | 96640269 | 96640345 | 96640269 | ID=MsG0580029409.01.T02:cds;Parent=MsG0580029409.01.T02 |
Chr5 | CDS | 96640495 | 96640696 | 96640495 | ID=MsG0580029409.01.T02:cds;Parent=MsG0580029409.01.T02 |
Chr5 | mRNA | 96640269 | 96640696 | 96640269 | ID=MsG0580029409.01.T03;Parent=MsG0580029409.01;Name=MsG0580029409.01.T03;_AED=0.23;_eAED=0.23;_QI=0|0|0|1|0|0|2|0|92 |
Chr5 | exon | 96640269 | 96640312 | 96640269 | ID=MsG0580029409.01.T03:exon:24553;Parent=MsG0580029409.01.T03 |
Chr5 | exon | 96640462 | 96640696 | 96640462 | ID=MsG0580029409.01.T03:exon:24554;Parent=MsG0580029409.01.T03 |
Chr5 | CDS | 96640269 | 96640312 | 96640269 | ID=MsG0580029409.01.T03:cds;Parent=MsG0580029409.01.T03 |
Chr5 | CDS | 96640462 | 96640696 | 96640462 | ID=MsG0580029409.01.T03:cds;Parent=MsG0580029409.01.T03 |
Chr5 | mRNA | 96640500 | 96640610 | 96640500 | ID=MsG0580029409.01.T04;Parent=MsG0580029409.01;Name=MsG0580029409.01.T04;_AED=0.37;_eAED=1.00;_QI=0|-1|0|1|-1|0|1|0|36 |
Chr5 | exon | 96640500 | 96640610 | 96640500 | ID=MsG0580029409.01.T04:exon:24555;Parent=MsG0580029409.01.T04 |
Chr5 | CDS | 96640500 | 96640610 | 96640500 | ID=MsG0580029409.01.T04:cds;Parent=MsG0580029409.01.T04 |
Gene Sequence |
Protein sequence |