AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0580029684.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0580029684.01.T01 MTR_5g090920 97.059 170 5 0 7 176 47 216 1.22e-120 340
MsG0580029684.01.T01 MTR_5g090910 86.982 169 22 0 7 175 47 215 3.52e-108 308
MsG0580029684.01.T01 MTR_5g090910 86.093 151 21 0 25 175 8 158 5.86e-95 272
MsG0580029684.01.T01 MTR_3g450930 72.353 170 44 2 7 175 47 214 4.03e-87 254
MsG0580029684.01.T01 MTR_3g450790 70.349 172 48 2 6 176 46 215 2.97e-85 250
MsG0580029684.01.T01 MTR_3g064700 53.846 169 73 3 7 173 48 213 6.88e-60 186
MsG0580029684.01.T01 MTR_1g088840 42.169 166 92 3 7 171 2 164 3.34e-42 139
MsG0580029684.01.T01 MTR_1g026140 42.857 175 92 4 7 175 50 222 6.70e-42 140
MsG0580029684.01.T01 MTR_1g088840 41.916 167 93 3 6 171 48 211 2.94e-41 138
MsG0580029684.01.T01 MTR_1g088825 41.916 167 93 3 6 171 48 211 2.94e-41 138
MsG0580029684.01.T01 MTR_1g088850 45.455 165 87 3 6 169 47 209 4.17e-41 138
MsG0580029684.01.T01 MTR_1g088845 42.105 171 87 4 6 171 48 211 8.71e-38 129
MsG0580029684.01.T01 MTR_1g088840 44.348 115 60 3 58 171 4 115 5.14e-27 99.0
MsG0580029684.01.T01 MTR_1g492670 45.455 66 35 1 106 171 2 66 2.31e-14 65.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0580029684.01.T01 AT2G30860 62.573 171 61 2 7 176 47 215 1.28e-75 226
MsG0580029684.01.T01 AT2G30870 60.234 171 65 2 7 176 47 215 2.30e-70 212
MsG0580029684.01.T01 AT3G03190 47.879 165 83 2 8 171 49 211 1.18e-50 162
MsG0580029684.01.T01 AT5G17220 43.293 164 92 1 8 171 49 211 1.67e-46 152
MsG0580029684.01.T01 AT3G62760 45.732 164 86 3 6 168 47 208 3.43e-46 151
MsG0580029684.01.T01 AT2G47730 42.857 168 93 3 7 173 97 262 2.82e-43 145
MsG0580029684.01.T01 AT2G47730 42.857 168 93 3 7 173 97 262 2.82e-43 145
MsG0580029684.01.T01 AT2G30860 60.550 109 40 2 7 114 47 153 1.41e-40 135
MsG0580029684.01.T01 AT1G02930 42.857 161 89 3 9 169 51 208 4.67e-38 130
MsG0580029684.01.T01 AT1G02930 42.857 161 89 3 9 169 51 208 4.67e-38 130
MsG0580029684.01.T01 AT1G49860 41.860 172 91 3 3 169 47 214 9.94e-38 130
MsG0580029684.01.T01 AT1G02920 42.857 161 90 2 9 169 51 209 2.45e-37 128
MsG0580029684.01.T01 AT4G02520 41.718 163 90 3 9 168 51 211 4.77e-37 127
MsG0580029684.01.T01 AT1G02950 42.236 161 90 3 6 165 69 227 1.52e-36 127
MsG0580029684.01.T01 AT1G02950 42.236 161 90 3 6 165 69 227 1.52e-36 127
MsG0580029684.01.T01 AT1G02950 42.236 161 90 3 6 165 81 239 1.63e-36 127
MsG0580029684.01.T01 AT1G02950 42.236 161 90 3 6 165 71 229 1.68e-36 127
MsG0580029684.01.T01 AT2G02930 41.463 164 91 3 9 169 51 212 1.24e-35 124
MsG0580029684.01.T01 AT1G02940 37.952 166 100 3 7 171 84 247 2.85e-31 114
MsG0580029684.01.T01 AT1G02940 37.952 166 100 3 7 171 84 247 2.85e-31 114
MsG0580029684.01.T01 AT1G02940 37.952 166 100 3 7 171 97 260 4.39e-31 114
MsG0580029684.01.T01 AT1G02940 37.952 166 100 3 7 171 109 272 5.66e-31 114
MsG0580029684.01.T01 AT1G02950 38.621 145 86 3 22 165 59 201 2.68e-27 102

Find 61 sgRNAs with CRISPR-Local

Find 427 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTTAGTTATGTTGTAGAATT+TGG 0.104649 5:+100734865 MsG0580029684.01.T01:three_prime_UTR
TGATTATATTGTTAATAATA+TGG 0.137099 5:+100734458 MsG0580029684.01.T01:CDS
AATCAATAAAATTATATATT+TGG 0.141682 5:+100734941 MsG0580029684.01.T01:three_prime_UTR
AAGATGGTTTACTAAGTTTA+AGG 0.145355 5:+100734778 MsG0580029684.01.T01:three_prime_UTR
GATGGAGACTATACCCTTTA+TGG 0.175031 5:+100727375 MsG0580029684.01.T01:CDS
TTAAGGGAAGTGAGGGATTT+TGG 0.186001 5:+100734795 MsG0580029684.01.T01:three_prime_UTR
GCTCGAAGAAAGTCACTTTA+AGG 0.211852 5:+100734711 MsG0580029684.01.T01:three_prime_UTR
GGGGAAAGATTATTTGATTA+AGG 0.243823 5:+100734479 MsG0580029684.01.T01:CDS
GTTATCAAAGAGCAAGTATT+TGG 0.269787 5:+100734389 MsG0580029684.01.T01:CDS
GTTCATAATCTGCAGCCTTT+TGG 0.308479 5:+100727333 MsG0580029684.01.T01:CDS
GCTTACAACTTGATCATTCA+TGG 0.312434 5:+100734267 MsG0580029684.01.T01:CDS
TCACTCTCTTCAATTACCTT+TGG 0.317783 5:-100734327 None:intergenic
GTCAAGATGTTTAACCATAA+AGG 0.320171 5:-100727389 None:intergenic
TTCCCTTCACTACTAGTTGA+TGG 0.324654 5:+100734294 MsG0580029684.01.T01:CDS
TTAACAATATAATCAGTAAA+TGG 0.341163 5:-100734450 None:intergenic
TTAGTTATGTTGTAGAATTT+GGG 0.356791 5:+100734866 MsG0580029684.01.T01:three_prime_UTR
GATTATATTGTTAATAATAT+GGG 0.363367 5:+100734459 MsG0580029684.01.T01:CDS
AGGAAAGACAATAGAAGAAA+AGG 0.389428 5:+100734194 MsG0580029684.01.T01:CDS
CATCTATTTGTGCAGAGTCT+AGG 0.392209 5:+100734118 MsG0580029684.01.T01:intron
TCTTCAATTACCTTTGGATC+TGG 0.393161 5:-100734321 None:intergenic
AATGTTCCTGTTATTAAAGA+TGG 0.393639 5:+100727357 MsG0580029684.01.T01:CDS
AGATGGTTTACTAAGTTTAA+GGG 0.397235 5:+100734779 MsG0580029684.01.T01:three_prime_UTR
CTCGAAGAAAGTCACTTTAA+GGG 0.406017 5:+100734712 MsG0580029684.01.T01:three_prime_UTR
TAGTCTCCATCTTTAATAAC+AGG 0.407930 5:-100727363 None:intergenic
TCAAGATGTTTAACCATAAA+GGG 0.413133 5:-100727388 None:intergenic
TGAAGAGAGTGAAGCAAAGT+TGG 0.427269 5:+100734338 MsG0580029684.01.T01:CDS
ATCTATTTGTGCAGAGTCTA+GGG 0.458363 5:+100734119 MsG0580029684.01.T01:intron
CGAGCAACCAAGTGTATGTT+GGG 0.474708 5:-100734693 None:intergenic
GGAAAGACAATAGAAGAAAA+GGG 0.480576 5:+100734195 MsG0580029684.01.T01:CDS
ATAACAGGAACATTTCCAAA+AGG 0.493720 5:-100727348 None:intergenic
CAGATTATGAACAAAGTACA+TGG 0.500387 5:-100727322 None:intergenic
GAAAGGAGAGAAGTAACAAA+TGG 0.501020 5:-100734839 None:intergenic
TATGTTGGTAAAGAATAAGA+TGG 0.506951 5:+100734762 MsG0580029684.01.T01:three_prime_UTR
TCAAAGAGCAAGTATTTGGC+TGG 0.510050 5:+100734393 MsG0580029684.01.T01:CDS
AAAGTCACTTTAAGGGAAAG+TGG 0.510249 5:+100734719 MsG0580029684.01.T01:three_prime_UTR
TACTAAGTTTAAGGGAAGTG+AGG 0.512333 5:+100734787 MsG0580029684.01.T01:three_prime_UTR
GTATTATCAATATCATATGT+TGG 0.512681 5:+100734747 MsG0580029684.01.T01:three_prime_UTR
TGTTGAACATTTATGAAGAG+AGG 0.513838 5:+100734367 MsG0580029684.01.T01:CDS
TCGAGCAACCAAGTGTATGT+TGG 0.528101 5:-100734694 None:intergenic
TCACAAGGGGTTGAGTTGCT+AGG 0.539500 5:+100734174 MsG0580029684.01.T01:CDS
ACTAAGTTTAAGGGAAGTGA+GGG 0.542787 5:+100734788 MsG0580029684.01.T01:three_prime_UTR
AAGATTATTTGATTAAGGAG+AGG 0.552057 5:+100734484 MsG0580029684.01.T01:CDS
GTGCCATCAACTAGTAGTGA+AGG 0.552925 5:-100734297 None:intergenic
TTTAAGCTTCTACAAAATTG+CGG 0.554996 5:+100734637 MsG0580029684.01.T01:three_prime_UTR
ATTATATTGTTAATAATATG+GGG 0.570271 5:+100734460 MsG0580029684.01.T01:CDS
AAAAGGGTCTTGTGGAACAA+TGG 0.581223 5:+100734211 MsG0580029684.01.T01:CDS
AATAGAAGAAAAGGGTCTTG+TGG 0.583687 5:+100734203 MsG0580029684.01.T01:CDS
AGGAGAGAAGTAACAAATGG+TGG 0.590594 5:-100734836 None:intergenic
CAATATAATCAGTAAATGGA+AGG 0.596823 5:-100734446 None:intergenic
TGTCCGTCCCAACATACACT+TGG 0.597733 5:+100734686 MsG0580029684.01.T01:three_prime_UTR
TGAGTTATATAGACCTCCAA+CGG 0.602410 5:+100734566 MsG0580029684.01.T01:CDS
CAACCAAGTGTATGTTGGGA+CGG 0.604819 5:-100734689 None:intergenic
TGATGGCACTCCAGATCCAA+AGG 0.616475 5:+100734311 MsG0580029684.01.T01:CDS
TGAATGATCAAGTTGTAAGC+TGG 0.624569 5:-100734264 None:intergenic
TGTAACATTTATCATAATCG+TGG 0.628063 5:-100734612 None:intergenic
TGCCATCAACTAGTAGTGAA+GGG 0.633206 5:-100734296 None:intergenic
ATATAAGTAGTAGACCATCA+TGG 0.637766 5:+100734532 MsG0580029684.01.T01:CDS
ATGATCAAGTTGTAAGCTGG+TGG 0.646810 5:-100734261 None:intergenic
GAAGGTGACTTATATCAGCA+AGG 0.657717 5:-100734428 None:intergenic
TGATCAAGTTGTAAGCTGGT+GGG 0.684135 5:-100734260 None:intergenic
AGATTATGAACAAAGTACAT+GGG 0.704393 5:-100727321 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTAAAATTTATTTTTATTTT+CGG - Chr5:100733790-100733809 None:intergenic 0.0%
!! ATTATATTGTTAATAATATG+GGG + Chr5:100734460-100734479 MsG0580029684.01.T01:CDS 10.0%
!! GATTATATTGTTAATAATAT+GGG + Chr5:100734459-100734478 MsG0580029684.01.T01:CDS 10.0%
!! TGATTATATTGTTAATAATA+TGG + Chr5:100734458-100734477 MsG0580029684.01.T01:CDS 10.0%
!!! AATTTCAATAATTTTATTTG+AGG - Chr5:100727898-100727917 None:intergenic 10.0%
!!! GATTTATCATTTTTATATTT+AGG + Chr5:100732247-100732266 MsG0580029684.01.T01:intron 10.0%
!!! TTATTCAATAATTTTATTTG+AGG - Chr5:100732746-100732765 None:intergenic 10.0%
!!! TTTTGTTGTATTAAAATTAA+GGG - Chr5:100734002-100734021 None:intergenic 10.0%
!!! TTTTTGTTGTATTAAAATTA+AGG - Chr5:100734003-100734022 None:intergenic 10.0%
!! AGTAAGTTAATATATTTGTA+TGG - Chr5:100730329-100730348 None:intergenic 15.0%
!! ATTAGTAGTGTTTATATAAT+GGG - Chr5:100728624-100728643 None:intergenic 15.0%
!! CAATTAAAGTTATTTATTCA+CGG + Chr5:100732109-100732128 MsG0580029684.01.T01:intron 15.0%
!! TTAACAATATAATCAGTAAA+TGG - Chr5:100734453-100734472 None:intergenic 15.0%
!!! AAAATATTTTAGCACAATTT+GGG + Chr5:100728471-100728490 MsG0580029684.01.T01:intron 15.0%
!!! GTTATTGATTATAACTATAT+TGG - Chr5:100731783-100731802 None:intergenic 15.0%
!!! TTGTTTTCAACTTATTTTTT+TGG + Chr5:100733893-100733912 MsG0580029684.01.T01:intron 15.0%
!! AAAATATATAAACCGCAATA+AGG + Chr5:100733815-100733834 MsG0580029684.01.T01:intron 20.0%
!! AACAAGTAAAATGAAAACTT+TGG + Chr5:100728322-100728341 MsG0580029684.01.T01:intron 20.0%
!! AATATATGAATGCAAGTTTA+CGG + Chr5:100729992-100730011 MsG0580029684.01.T01:intron 20.0%
!! ACAACATAACTAAAAATGAA+AGG - Chr5:100734859-100734878 None:intergenic 20.0%
!! ACGAAAATTGAAATTTATGT+TGG - Chr5:100731285-100731304 None:intergenic 20.0%
!! ATACTGAAACAACTTTAATA+TGG + Chr5:100727744-100727763 MsG0580029684.01.T01:intron 20.0%
!! ATCCTTGAAAAAAAAAATGT+AGG - Chr5:100733964-100733983 None:intergenic 20.0%
!! CATTAGTAGTGTTTATATAA+TGG - Chr5:100728625-100728644 None:intergenic 20.0%
!! GTATTATCAATATCATATGT+TGG + Chr5:100734747-100734766 MsG0580029684.01.T01:three_prime_UTR 20.0%
!! GTATTATTACCATTCTATTA+TGG + Chr5:100727766-100727785 MsG0580029684.01.T01:intron 20.0%
!! TCTAAAAATTAAGAACTAGT+GGG - Chr5:100730919-100730938 None:intergenic 20.0%
!! TGAAAAAACAAGAATTAGAA+AGG - Chr5:100727426-100727445 None:intergenic 20.0%
!! TGAAAACATAAAAATCAGTA+AGG - Chr5:100734100-100734119 None:intergenic 20.0%
!! TTAGTAGTGTTTATATAATG+GGG - Chr5:100728623-100728642 None:intergenic 20.0%
!! TTAGTTATGTTGTAGAATTT+GGG + Chr5:100734866-100734885 MsG0580029684.01.T01:three_prime_UTR 20.0%
!! TTTAGTATATGTTTGATACT+AGG - Chr5:100733715-100733734 None:intergenic 20.0%
!! TTTAGTTATGTTGTAGAATT+TGG + Chr5:100734865-100734884 MsG0580029684.01.T01:three_prime_UTR 20.0%
!!! AAATATTTTAGCACAATTTG+GGG + Chr5:100728472-100728491 MsG0580029684.01.T01:intron 20.0%
!!! AATTTTAAACTTGAGTAACT+TGG - Chr5:100731547-100731566 None:intergenic 20.0%
!!! AATTTTGAACATTTCATCAA+AGG + Chr5:100731640-100731659 MsG0580029684.01.T01:intron 20.0%
!!! ACCTTGTTAATTTTGTAAAA+CGG - Chr5:100733669-100733688 None:intergenic 20.0%
!!! ACTAGTTCTTAATTTTTAGA+AGG + Chr5:100730919-100730938 MsG0580029684.01.T01:intron 20.0%
!!! CAAAATATTTTAGCACAATT+TGG + Chr5:100728470-100728489 MsG0580029684.01.T01:intron 20.0%
!!! CAAATTGTGCTAAAATATTT+TGG - Chr5:100728472-100728491 None:intergenic 20.0%
!!! CTAGTTCTTAATTTTTAGAA+GGG + Chr5:100730920-100730939 MsG0580029684.01.T01:intron 20.0%
!!! TAATTTTATTTGAGGAGAAA+TGG - Chr5:100727890-100727909 None:intergenic 20.0%
!!! TATGAATTTGGTTTATACAT+TGG - Chr5:100730791-100730810 None:intergenic 20.0%
!!! TTAATTTACCAAAGGTATAT+TGG + Chr5:100731822-100731841 MsG0580029684.01.T01:intron 20.0%
!!! TTCTAAAAATTAAGAACTAG+TGG - Chr5:100730920-100730939 None:intergenic 20.0%
!!! TTCTGATTTATATGAACTTT+TGG + Chr5:100731462-100731481 MsG0580029684.01.T01:intron 20.0%
!!! TTTCAACTTATTTTTTTGGA+AGG + Chr5:100733897-100733916 MsG0580029684.01.T01:intron 20.0%
! AAAAAGAAACTAAAACCTGA+TGG - Chr5:100730605-100730624 None:intergenic 25.0%
! AACAAATGAAAAGGACAATA+CGG - Chr5:100731935-100731954 None:intergenic 25.0%
! AACTAATAAGTGAGAAACTT+TGG + Chr5:100728298-100728317 MsG0580029684.01.T01:intron 25.0%
! AAGATGGTTTACTAAGTTTA+AGG + Chr5:100734778-100734797 MsG0580029684.01.T01:three_prime_UTR 25.0%
! AAGATTATTTGATTAAGGAG+AGG + Chr5:100734484-100734503 MsG0580029684.01.T01:CDS 25.0%
! AATGAGATCTATACTCTATT+TGG - Chr5:100729120-100729139 None:intergenic 25.0%
! AATGTTCCTGTTATTAAAGA+TGG + Chr5:100727357-100727376 MsG0580029684.01.T01:CDS 25.0%
! AATTCTCCTTCTATATATGT+TGG - Chr5:100731619-100731638 None:intergenic 25.0%
! ACAAAGTTAAGAAGATCTAA+AGG - Chr5:100730034-100730053 None:intergenic 25.0%
! ACAAGTAAAATGAGAAACTT+TGG + Chr5:100733175-100733194 MsG0580029684.01.T01:intron 25.0%
! ACCTCAATAAGTAATTTCTT+CGG + Chr5:100732279-100732298 MsG0580029684.01.T01:intron 25.0%
! ACTAATAAGTGAGAAACTTT+GGG + Chr5:100728299-100728318 MsG0580029684.01.T01:intron 25.0%
! AGAAAAATATAGATCACAAG+GGG + Chr5:100734161-100734180 MsG0580029684.01.T01:CDS 25.0%
! AGATGGTTTACTAAGTTTAA+GGG + Chr5:100734779-100734798 MsG0580029684.01.T01:three_prime_UTR 25.0%
! AGTAACCTATTGTACTTAAA+TGG - Chr5:100729748-100729767 None:intergenic 25.0%
! AGTTCAAAAATAAGACAAGT+TGG + Chr5:100731198-100731217 MsG0580029684.01.T01:intron 25.0%
! ATGAGGATATAACTTCTTTA+AGG + Chr5:100730749-100730768 MsG0580029684.01.T01:intron 25.0%
! ATTCTCCTTCTATATATGTT+GGG - Chr5:100731618-100731637 None:intergenic 25.0%
! ATTGTCTAATCATATAACGT+TGG + Chr5:100731513-100731532 MsG0580029684.01.T01:intron 25.0%
! CAAGTAAAATGAGAAACTTT+GGG + Chr5:100733176-100733195 MsG0580029684.01.T01:intron 25.0%
! CAATATAATCAGTAAATGGA+AGG - Chr5:100734449-100734468 None:intergenic 25.0%
! CAGAAAAATATAGATCACAA+GGG + Chr5:100734160-100734179 MsG0580029684.01.T01:CDS 25.0%
! CGATAAATAACGAAACATAT+AGG - Chr5:100731090-100731109 None:intergenic 25.0%
! CTAAAAATTAAGAACTAGTG+GGG - Chr5:100730918-100730937 None:intergenic 25.0%
! CTATGATCACTTTAACATTT+AGG + Chr5:100731056-100731075 MsG0580029684.01.T01:intron 25.0%
! GACAAAATTGAAGTAATTCT+TGG - Chr5:100730103-100730122 None:intergenic 25.0%
! GACATTGTTTATTCCAAATA+GGG + Chr5:100727955-100727974 MsG0580029684.01.T01:intron 25.0%
! GGAATCAAAAATGATCTTAA+CGG - Chr5:100727930-100727949 None:intergenic 25.0%
! GTAATAGCATAAGATTCAAT+AGG - Chr5:100734078-100734097 None:intergenic 25.0%
! TAAAAATTAAGAACTAGTGG+GGG - Chr5:100730917-100730936 None:intergenic 25.0%
! TAAAATCAGTTGTCAAGTAT+TGG - Chr5:100731979-100731998 None:intergenic 25.0%
! TAAAGAAGTTATATCCTCAT+TGG - Chr5:100730749-100730768 None:intergenic 25.0%
! TAGTAGTGTTTATATAATGG+GGG - Chr5:100728622-100728641 None:intergenic 25.0%
! TCAAGATGTTTAACCATAAA+GGG - Chr5:100727391-100727410 None:intergenic 25.0%
! TGTAACATTTATCATAATCG+TGG - Chr5:100734615-100734634 None:intergenic 25.0%
! TTAGAATACACCTTATGAAA+AGG - Chr5:100728945-100728964 None:intergenic 25.0%
! TTGTACCATTTAAGTACAAT+AGG + Chr5:100729740-100729759 MsG0580029684.01.T01:intron 25.0%
! TTGTATTAAAATTAAGGGCA+AGG - Chr5:100733997-100734016 None:intergenic 25.0%
! TTGTTTACTAGCAAATCTTA+TGG - Chr5:100728817-100728836 None:intergenic 25.0%
! TTTAAGCTTCTACAAAATTG+CGG + Chr5:100734637-100734656 MsG0580029684.01.T01:three_prime_UTR 25.0%
!! AATGCTAAAGAGTATGAATT+TGG - Chr5:100730803-100730822 None:intergenic 25.0%
!! AATTAGAAAGGCATAACATA+GGG - Chr5:100727414-100727433 None:intergenic 25.0%
!! ACCGTTTTACAAAATTAACA+AGG + Chr5:100733665-100733684 MsG0580029684.01.T01:intron 25.0%
!! ACTCAATTTATTCTAGAAGA+AGG - Chr5:100733941-100733960 None:intergenic 25.0%
!! ATAGTACCATATTGATAGTT+TGG - Chr5:100727843-100727862 None:intergenic 25.0%
!! GAATTACTTCAATTTTGTCT+AGG + Chr5:100730104-100730123 MsG0580029684.01.T01:intron 25.0%
!! GAATTTTTGTTCTTAGACTT+TGG + Chr5:100731251-100731270 MsG0580029684.01.T01:intron 25.0%
!! TATGTTGGTAAAGAATAAGA+TGG + Chr5:100734762-100734781 MsG0580029684.01.T01:three_prime_UTR 25.0%
!! TTCTTGCTTTAATTTACCAA+AGG + Chr5:100731814-100731833 MsG0580029684.01.T01:intron 25.0%
!! TTGTTAATTTTGTAAAACGG+TGG - Chr5:100733666-100733685 None:intergenic 25.0%
!!! AACCGTTTTTTAAATTCAAG+TGG - Chr5:100728770-100728789 None:intergenic 25.0%
!!! ACCGTTTTTTAAATTCAAGT+GGG - Chr5:100728769-100728788 None:intergenic 25.0%
!!! ACTTGTCTTATTTTTGAACT+TGG - Chr5:100731198-100731217 None:intergenic 25.0%
!!! AGTATTGGAGATTTTTTGTA+CGG - Chr5:100731964-100731983 None:intergenic 25.0%
!!! ATTTTGATCCTATAAGAACA+AGG - Chr5:100731709-100731728 None:intergenic 25.0%
!!! CGTCTTAAAATTGTTGTTTT+TGG + Chr5:100732321-100732340 MsG0580029684.01.T01:intron 25.0%
!!! CTTGTCTTATTTTTGAACTT+GGG - Chr5:100731197-100731216 None:intergenic 25.0%
!!! GTCCTACATTTTTTTTTTCA+AGG + Chr5:100733959-100733978 MsG0580029684.01.T01:intron 25.0%
!!! TAAGATTTGCTAGTAAACAA+AGG + Chr5:100728817-100728836 MsG0580029684.01.T01:intron 25.0%
!!! TTTGTCTTTTTCAATTGTCA+AGG + Chr5:100732031-100732050 MsG0580029684.01.T01:intron 25.0%
!!! TTTTTTTTCAAGGATCACAA+TGG + Chr5:100733969-100733988 MsG0580029684.01.T01:intron 25.0%
AAAACCTTTGATTACAAGGA+GGG + Chr5:100730559-100730578 MsG0580029684.01.T01:intron 30.0%
AAAGTCCTAAAACACACAAT+AGG - Chr5:100729315-100729334 None:intergenic 30.0%
AAAGTTATTTATTCACGGTG+CGG + Chr5:100732114-100732133 MsG0580029684.01.T01:intron 30.0%
AAGACCATTCTTAATTCAGA+AGG + Chr5:100728041-100728060 MsG0580029684.01.T01:intron 30.0%
AAGGATCAAGTGGAAAATTA+AGG + Chr5:100732050-100732069 MsG0580029684.01.T01:intron 30.0%
AAGGGACATATATTATCGAA+GGG + Chr5:100732857-100732876 MsG0580029684.01.T01:intron 30.0%
AATCACCCAACATATATAGA+AGG + Chr5:100731610-100731629 MsG0580029684.01.T01:intron 30.0%
AATCGGTTGTATTTGGATTT+CGG - Chr5:100730628-100730647 None:intergenic 30.0%
AATGTCGGATCTAATACATT+CGG + Chr5:100729888-100729907 MsG0580029684.01.T01:intron 30.0%
ACCGAAGAAATTACTTATTG+AGG - Chr5:100732283-100732302 None:intergenic 30.0%
AGACCATTCTTAATTCAGAA+GGG + Chr5:100728042-100728061 MsG0580029684.01.T01:intron 30.0%
AGGAAAGACAATAGAAGAAA+AGG + Chr5:100734194-100734213 MsG0580029684.01.T01:CDS 30.0%
AGTTCTCCAAACTATCAATA+TGG + Chr5:100727834-100727853 MsG0580029684.01.T01:intron 30.0%
ATAACAGGAACATTTCCAAA+AGG - Chr5:100727351-100727370 None:intergenic 30.0%
ATATAAGTAGTAGACCATCA+TGG + Chr5:100734532-100734551 MsG0580029684.01.T01:CDS 30.0%
ATCGTTAGAGACGATAATTA+AGG - Chr5:100729454-100729473 None:intergenic 30.0%
ATTAAGGCATGAACACATAA+AGG - Chr5:100729438-100729457 None:intergenic 30.0%
CAAAATCAATCGGTTGTATT+TGG - Chr5:100730635-100730654 None:intergenic 30.0%
CAAATCTACAATATACCTGT+TGG - Chr5:100733626-100733645 None:intergenic 30.0%
CCACTATTCTTTAGTTAAAG+GGG + Chr5:100730998-100731017 MsG0580029684.01.T01:intron 30.0%
CCCACTATTCTTTAGTTAAA+GGG + Chr5:100730997-100731016 MsG0580029684.01.T01:intron 30.0%
CCCCACTTGAATTTAAAAAA+CGG + Chr5:100728765-100728784 MsG0580029684.01.T01:intron 30.0%
CCCTTTAACTAAAGAATAGT+GGG - Chr5:100731000-100731019 None:intergenic 30.0%
CCTTTAACTAAAGAATAGTG+GGG - Chr5:100730999-100731018 None:intergenic 30.0%
CTCATAGTTGCAAAATCAAT+CGG - Chr5:100730645-100730664 None:intergenic 30.0%
CTTATGAATGTGTATTCATC+GGG - Chr5:100731117-100731136 None:intergenic 30.0%
CTTCGGTAGATAATAGAATT+TGG - Chr5:100727525-100727544 None:intergenic 30.0%
CTTTAACTAAAGAATAGTGG+GGG - Chr5:100730998-100731017 None:intergenic 30.0%
GAAATCCAAATACAACAGTA+TGG - Chr5:100727503-100727522 None:intergenic 30.0%
GAGAATTACACCTTCAAATA+TGG + Chr5:100727703-100727722 MsG0580029684.01.T01:intron 30.0%
GATTTCCATACTGTTGTATT+TGG + Chr5:100727495-100727514 MsG0580029684.01.T01:intron 30.0%
GCAGAAAAATATAGATCACA+AGG + Chr5:100734159-100734178 MsG0580029684.01.T01:CDS 30.0%
GCTTATGAATGTGTATTCAT+CGG - Chr5:100731118-100731137 None:intergenic 30.0%
GGAAAGACAATAGAAGAAAA+GGG + Chr5:100734195-100734214 MsG0580029684.01.T01:CDS 30.0%
GGACATTGTTTATTCCAAAT+AGG + Chr5:100727954-100727973 MsG0580029684.01.T01:intron 30.0%
GGGGAAAGATTATTTGATTA+AGG + Chr5:100734479-100734498 MsG0580029684.01.T01:CDS 30.0%
GTCAAGATGTTTAACCATAA+AGG - Chr5:100727392-100727411 None:intergenic 30.0%
GTTATCAAAGAGCAAGTATT+TGG + Chr5:100734389-100734408 MsG0580029684.01.T01:CDS 30.0%
GTTGTGTGAATTGAAAAAAG+TGG - Chr5:100728674-100728693 None:intergenic 30.0%
TAAAACCTTTGATTACAAGG+AGG + Chr5:100730558-100730577 MsG0580029684.01.T01:intron 30.0%
TAAAATAAACTCCTGAGGAA+TGG - Chr5:100730304-100730323 None:intergenic 30.0%
TAAACACAAATTCCCATGTT+GGG - Chr5:100728707-100728726 None:intergenic 30.0%
TAGTCTCCATCTTTAATAAC+AGG - Chr5:100727366-100727385 None:intergenic 30.0%
TATATAAACCGCAATAAGGT+AGG + Chr5:100733819-100733838 MsG0580029684.01.T01:intron 30.0%
TCACAATGAATTAACACTTC+TGG + Chr5:100729502-100729521 MsG0580029684.01.T01:intron 30.0%
TGATAGTTTGGAGAACTTAA+AGG - Chr5:100727831-100727850 None:intergenic 30.0%
TGTTGAACATTTATGAAGAG+AGG + Chr5:100734367-100734386 MsG0580029684.01.T01:CDS 30.0%
TTAAGATCATAGTCCCTATT+TGG - Chr5:100727971-100727990 None:intergenic 30.0%
TTAGAGTCATAGTCTTCTTA+AGG + Chr5:100729783-100729802 MsG0580029684.01.T01:intron 30.0%
TTAGTTAATCCTTTGACGAA+AGG - Chr5:100729351-100729370 None:intergenic 30.0%
TTATGAAAAGGTTTGTGTGT+GGG - Chr5:100728933-100728952 None:intergenic 30.0%
TTCGATAATATATGTCCCTT+CGG - Chr5:100732857-100732876 None:intergenic 30.0%
! AAAGAGTTTCATTGAGTTGT+CGG - Chr5:100728230-100728249 None:intergenic 30.0%
! AAAGTACTCTTTATTCCGAA+GGG + Chr5:100727990-100728009 MsG0580029684.01.T01:intron 30.0%
! ACATTGTGATTTTGCTAAAG+TGG + Chr5:100734662-100734681 MsG0580029684.01.T01:three_prime_UTR 30.0%
! ATGGATATGATTTTCGTGAA+TGG + Chr5:100730496-100730515 MsG0580029684.01.T01:intron 30.0%
! GAATTAGAAAGGCATAACAT+AGG - Chr5:100727415-100727434 None:intergenic 30.0%
! GATCTATCTCCAATTTTATC+CGG - Chr5:100733852-100733871 None:intergenic 30.0%
! GTCTAAAACCTTTGATTACA+AGG + Chr5:100730555-100730574 MsG0580029684.01.T01:intron 30.0%
! GTTGTTTCAGTATTAAAGAG+TGG - Chr5:100727737-100727756 None:intergenic 30.0%
! TCAAGAATTTTGTTCCATGA+TGG - Chr5:100734549-100734568 None:intergenic 30.0%
! TGAATTAACACTTCTGGAAA+CGG + Chr5:100729508-100729527 MsG0580029684.01.T01:intron 30.0%
!! AAAAGTACTCTTTATTCCGA+AGG + Chr5:100727989-100728008 MsG0580029684.01.T01:intron 30.0%
!! AAGATCATTTTTGATTCCGA+CGG + Chr5:100727932-100727951 MsG0580029684.01.T01:intron 30.0%
!! ATTTTAAGGGAAGGAACAAA+AGG - Chr5:100727449-100727468 None:intergenic 30.0%
!! TTCTAGTTCACCATAAAATG+AGG + Chr5:100730411-100730430 MsG0580029684.01.T01:intron 30.0%
!! TTTTATTTGAGGAGAAATGG+TGG - Chr5:100727887-100727906 None:intergenic 30.0%
!!! CAATTTTAAGACGTTTCGAT+CGG - Chr5:100732314-100732333 None:intergenic 30.0%
!!! CCGTTTTTTAAATTCAAGTG+GGG - Chr5:100728768-100728787 None:intergenic 30.0%
!!! CGTTTTTTAAATTCAAGTGG+GGG - Chr5:100728767-100728786 None:intergenic 30.0%
AAAGGAGTAGAAAAAGGAGA+AGG + Chr5:100728122-100728141 MsG0580029684.01.T01:intron 35.0%
AAGGGACATTAAACCGAAAA+GGG + Chr5:100728060-100728079 MsG0580029684.01.T01:intron 35.0%
AAGTGTAAGAACACTTGAGA+TGG - Chr5:100729965-100729984 None:intergenic 35.0%
AATAGAAGAAAAGGGTCTTG+TGG + Chr5:100734203-100734222 MsG0580029684.01.T01:CDS 35.0%
AATCCACTATGGAATGAATC+TGG - Chr5:100729612-100729631 None:intergenic 35.0%
ACAGAATATACGAGCATCAA+TGG - Chr5:100729932-100729951 None:intergenic 35.0%
ACTAAGTTTAAGGGAAGTGA+GGG + Chr5:100734788-100734807 MsG0580029684.01.T01:three_prime_UTR 35.0%
ACTAGTGAGTTTAACTCTCT+TGG + Chr5:100731141-100731160 MsG0580029684.01.T01:intron 35.0%
ACTCAACCTAGTAACAACTT+CGG - Chr5:100727542-100727561 None:intergenic 35.0%
AGACAAATATTTAGCGCAAC+AGG - Chr5:100732018-100732037 None:intergenic 35.0%
AGAGGAAAAATGTAAGTGCT+TGG + Chr5:100734502-100734521 MsG0580029684.01.T01:CDS 35.0%
AGGATAGATTCCAAGAATCA+TGG - Chr5:100733695-100733714 None:intergenic 35.0%
ATAACTCGATAGTACTCCAA+AGG - Chr5:100730449-100730468 None:intergenic 35.0%
ATCCACTATGGAATGAATCT+GGG - Chr5:100729611-100729630 None:intergenic 35.0%
ATCCCAAGAAATAGGTTCAA+TGG - Chr5:100729237-100729256 None:intergenic 35.0%
ATCTATTTGTGCAGAGTCTA+GGG + Chr5:100734119-100734138 MsG0580029684.01.T01:intron 35.0%
ATCTCAAGTGTTCTTACACT+TGG + Chr5:100729964-100729983 MsG0580029684.01.T01:intron 35.0%
ATGCTATAGAAAGAGTCATG+AGG - Chr5:100729811-100729830 None:intergenic 35.0%
ATTAAACCGAAAAGGGACTA+TGG + Chr5:100728067-100728086 MsG0580029684.01.T01:intron 35.0%
CCCCACTATTCTTTAGTTAA+AGG + Chr5:100730996-100731015 MsG0580029684.01.T01:intron 35.0%
CCCCTTTAACTAAAGAATAG+TGG - Chr5:100731001-100731020 None:intergenic 35.0%
CCTAAAACACACAATAGGAT+GGG - Chr5:100729310-100729329 None:intergenic 35.0%
CGTCAACACAAGTCAAAAAA+GGG + Chr5:100728187-100728206 MsG0580029684.01.T01:intron 35.0%
CTAAACACAAATTCCCATGT+TGG - Chr5:100728708-100728727 None:intergenic 35.0%
CTAGTAATTCCTTTCGTCAA+AGG + Chr5:100729339-100729358 MsG0580029684.01.T01:intron 35.0%
CTAGTGAGTTTAACTCTCTT+GGG + Chr5:100731142-100731161 MsG0580029684.01.T01:intron 35.0%
CTATACGAATGTGGAACTAA+GGG - Chr5:100729056-100729075 None:intergenic 35.0%
CTTATGAAAAGGTTTGTGTG+TGG - Chr5:100728934-100728953 None:intergenic 35.0%
CTTCGATAATATAGTCCCTT+CGG - Chr5:100728008-100728027 None:intergenic 35.0%
GAAAAATGTAAGTGCTTGGT+GGG + Chr5:100734506-100734525 MsG0580029684.01.T01:CDS 35.0%
GAAACTAAAACCTGATGGTA+CGG - Chr5:100730600-100730619 None:intergenic 35.0%
GAAAGGAGAGAAGTAACAAA+TGG - Chr5:100734842-100734861 None:intergenic 35.0%
GAACTTAAAGGTTAGAATGG+TGG - Chr5:100727819-100727838 None:intergenic 35.0%
GAAGGGACATATATTATCGA+AGG + Chr5:100732856-100732875 MsG0580029684.01.T01:intron 35.0%
GAAGGGACTATATTATCGAA+GGG + Chr5:100728007-100728026 MsG0580029684.01.T01:intron 35.0%
GACAACTCAATGAAACTCTT+TGG + Chr5:100728229-100728248 MsG0580029684.01.T01:intron 35.0%
GATCTATACTCTATTTGGAG+TGG - Chr5:100729115-100729134 None:intergenic 35.0%
GATGTTATAGAACCTCAAAG+AGG - Chr5:100730839-100730858 None:intergenic 35.0%
GCTTACAACTTGATCATTCA+TGG + Chr5:100734267-100734286 MsG0580029684.01.T01:CDS 35.0%
GGAGAACTTAAAGGTTAGAA+TGG - Chr5:100727822-100727841 None:intergenic 35.0%
GGTCTTAGTACCATATTTGA+AGG - Chr5:100727716-100727735 None:intergenic 35.0%
GTACTATGACCACTCAAATA+TGG + Chr5:100727856-100727875 MsG0580029684.01.T01:intron 35.0%
GTCTAACAAAACATGACACT+TGG - Chr5:100730677-100730696 None:intergenic 35.0%
GTCTTAGCACCATAATAGAA+TGG - Chr5:100727778-100727797 None:intergenic 35.0%
TACTAAGTTTAAGGGAAGTG+AGG + Chr5:100734787-100734806 MsG0580029684.01.T01:three_prime_UTR 35.0%
TAGTGAGTTTAACTCTCTTG+GGG + Chr5:100731143-100731162 MsG0580029684.01.T01:intron 35.0%
TATCTACCGAAGTTGTTACT+AGG + Chr5:100727533-100727552 MsG0580029684.01.T01:intron 35.0%
TATGTACCCCCATTAATTAG+AGG + Chr5:100728592-100728611 MsG0580029684.01.T01:intron 35.0%
TATTCATAAACCGTACCATC+AGG + Chr5:100730587-100730606 MsG0580029684.01.T01:intron 35.0%
TCACTCTCTTCAATTACCTT+TGG - Chr5:100734330-100734349 None:intergenic 35.0%
TCCCAAAAATTGCTTCAGTA+CGG - Chr5:100731860-100731879 None:intergenic 35.0%
TCCCAAGAAATAGGTTCAAT+GGG - Chr5:100729236-100729255 None:intergenic 35.0%
TCCCTTAAAATATGCGTGTT+GGG + Chr5:100727458-100727477 MsG0580029684.01.T01:intron 35.0%
TCCTAAAACACACAATAGGA+TGG - Chr5:100729311-100729330 None:intergenic 35.0%
TCGTCAACACAAGTCAAAAA+AGG + Chr5:100728186-100728205 MsG0580029684.01.T01:intron 35.0%
TCTTCAATTACCTTTGGATC+TGG - Chr5:100734324-100734343 None:intergenic 35.0%
TGAGCTAACCAATATACCTT+TGG - Chr5:100731833-100731852 None:intergenic 35.0%
TGAGTTATATAGACCTCCAA+CGG + Chr5:100734566-100734585 MsG0580029684.01.T01:CDS 35.0%
TGATATCCGTCTACCAAAAT+TGG + Chr5:100731753-100731772 MsG0580029684.01.T01:intron 35.0%
TGGTACGGTTTATGAATACA+AGG - Chr5:100730585-100730604 None:intergenic 35.0%
TGTCCCTTCTGAATTAAGAA+TGG - Chr5:100728048-100728067 None:intergenic 35.0%
TGTGCAAGTTTACTAGTAGA+CGG - Chr5:100729849-100729868 None:intergenic 35.0%
TTACCATCACTTATGACCTT+CGG + Chr5:100729277-100729296 MsG0580029684.01.T01:intron 35.0%
TTCAATTGTCAAGGATCAAG+TGG + Chr5:100732040-100732059 MsG0580029684.01.T01:intron 35.0%
TTCCCTTAAAATATGCGTGT+TGG + Chr5:100727457-100727476 MsG0580029684.01.T01:intron 35.0%
TTGTTAAACAAGTCGAAGGA+GGG + Chr5:100728147-100728166 MsG0580029684.01.T01:intron 35.0%
! AAAGTCACTTTAAGGGAAAG+TGG + Chr5:100734719-100734738 MsG0580029684.01.T01:three_prime_UTR 35.0%
! AAGAGTTTCATTGAGTTGTC+GGG - Chr5:100728229-100728248 None:intergenic 35.0%
! AATTCTCGAACGGTTTTCTA+CGG - Chr5:100727690-100727709 None:intergenic 35.0%
! AATTTTTCATGCCATTCCTC+AGG + Chr5:100730290-100730309 MsG0580029684.01.T01:intron 35.0%
! ACCCATTGAACCTATTTCTT+GGG + Chr5:100729232-100729251 MsG0580029684.01.T01:intron 35.0%
! CACACACAAACCTTTTCATA+AGG + Chr5:100728932-100728951 MsG0580029684.01.T01:intron 35.0%
! CTAAAGGACTAGTACTCTTA+TGG + Chr5:100730477-100730496 MsG0580029684.01.T01:intron 35.0%
! CTCGAAGAAAGTCACTTTAA+GGG + Chr5:100734712-100734731 MsG0580029684.01.T01:three_prime_UTR 35.0%
! CTCGGGTACTCAATTATTTT+AGG - Chr5:100731732-100731751 None:intergenic 35.0%
! GAATTTTACTCGCTATGCAA+AGG - Chr5:100728861-100728880 None:intergenic 35.0%
! GTGAAAGTTGCCTCATTTTA+TGG - Chr5:100730424-100730443 None:intergenic 35.0%
! TACCCAACACGCATATTTTA+AGG - Chr5:100727463-100727482 None:intergenic 35.0%
! TACCCATTGAACCTATTTCT+TGG + Chr5:100729231-100729250 MsG0580029684.01.T01:intron 35.0%
! TAGTAATTTTCTCAGACCGT+TGG - Chr5:100734585-100734604 None:intergenic 35.0%
! TCTTTTCCCACAAAAATGCA+TGG + Chr5:100731668-100731687 MsG0580029684.01.T01:intron 35.0%
! TGAATGATCAAGTTGTAAGC+TGG - Chr5:100734267-100734286 None:intergenic 35.0%
! TGGTCTAAAATAAACTCCTG+AGG - Chr5:100730309-100730328 None:intergenic 35.0%
! TGTACACCATGCATTTTTGT+GGG - Chr5:100731677-100731696 None:intergenic 35.0%
! TTAAGACCATAGTCCCTTTT+CGG - Chr5:100728076-100728095 None:intergenic 35.0%
! TTAGCTTTCTTACCTCTTTG+AGG + Chr5:100730824-100730843 MsG0580029684.01.T01:intron 35.0%
! TTGAAGGTGTAATTCTCGAA+CGG - Chr5:100727700-100727719 None:intergenic 35.0%
! TTGTACACCATGCATTTTTG+TGG - Chr5:100731678-100731697 None:intergenic 35.0%
! TTTTTGAACTTGGGATTGTC+CGG - Chr5:100731188-100731207 None:intergenic 35.0%
!! AACACGCATATTTTAAGGGA+AGG - Chr5:100727458-100727477 None:intergenic 35.0%
!! ACCCAACACGCATATTTTAA+GGG - Chr5:100727462-100727481 None:intergenic 35.0%
!! AGATCATTTTTGATTCCGAC+GGG + Chr5:100727933-100727952 MsG0580029684.01.T01:intron 35.0%
!! CTATATTGGAGCACCAATTT+TGG - Chr5:100731769-100731788 None:intergenic 35.0%
!! GACTCTAAGATTACTTCATG+AGG - Chr5:100729771-100729790 None:intergenic 35.0%
!! GATATTGACTCAATCCACTA+TGG - Chr5:100729623-100729642 None:intergenic 35.0%
!! TATGCAAAGGTTCAAGTTGT+AGG - Chr5:100728848-100728867 None:intergenic 35.0%
!!! GTGTTGGGTATTGTTGTTTT+TGG + Chr5:100727473-100727492 MsG0580029684.01.T01:intron 35.0%
AAAAAGTGGAAGTCCCACAT+CGG - Chr5:100728660-100728679 None:intergenic 40.0%
AAATTCAAGTGGGGGATTGT+TGG - Chr5:100728759-100728778 None:intergenic 40.0%
AAGAACACTCTTGATTCCGA+AGG + Chr5:100728094-100728113 MsG0580029684.01.T01:intron 40.0%
ACAAGGTTCACCATGATTCT+TGG + Chr5:100733682-100733701 MsG0580029684.01.T01:intron 40.0%
AGAACACTCTTGATTCCGAA+GGG + Chr5:100728095-100728114 MsG0580029684.01.T01:intron 40.0%
AGGAGAGAAGTAACAAATGG+TGG - Chr5:100734839-100734858 None:intergenic 40.0%
ATCCCAGATTCATTCCATAG+TGG + Chr5:100729606-100729625 MsG0580029684.01.T01:intron 40.0%
ATGATTCCTGAAGCGATAGA+TGG - Chr5:100729163-100729182 None:intergenic 40.0%
CAATAAGGTAGGTCTCTTAC+CGG + Chr5:100733830-100733849 MsG0580029684.01.T01:intron 40.0%
CATCTATTTGTGCAGAGTCT+AGG + Chr5:100734118-100734137 MsG0580029684.01.T01:intron 40.0%
CCATAATTCAGCATCCAATG+AGG + Chr5:100730732-100730751 MsG0580029684.01.T01:intron 40.0%
CCATGAATCGCAAAACTTTC+AGG + Chr5:100730368-100730387 MsG0580029684.01.T01:intron 40.0%
CCTATACGAATGTGGAACTA+AGG - Chr5:100729057-100729076 None:intergenic 40.0%
CCTCATTGGATGCTGAATTA+TGG - Chr5:100730735-100730754 None:intergenic 40.0%
CCTTAGTTCCACATTCGTAT+AGG + Chr5:100729054-100729073 MsG0580029684.01.T01:intron 40.0%
CGAAGGGACTATATTATCGA+AGG + Chr5:100728006-100728025 MsG0580029684.01.T01:intron 40.0%
CGATTCATGGACAAGAAACA+TGG - Chr5:100730358-100730377 None:intergenic 40.0%
CGGTGCAGTAACAAATGAAA+AGG - Chr5:100731944-100731963 None:intergenic 40.0%
CTAGCTACTCTCAAAAGGAA+CGG - Chr5:100729406-100729425 None:intergenic 40.0%
CTTGTTAAACAAGTCGAAGG+AGG + Chr5:100728146-100728165 MsG0580029684.01.T01:intron 40.0%
GAAGGGACATTAAACCGAAA+AGG + Chr5:100728059-100728078 MsG0580029684.01.T01:intron 40.0%
GAAGGTGACTTATATCAGCA+AGG - Chr5:100734431-100734450 None:intergenic 40.0%
GATGGAGACTATACCCTTTA+TGG + Chr5:100727375-100727394 MsG0580029684.01.T01:CDS 40.0%
GGAAAAATGTAAGTGCTTGG+TGG + Chr5:100734505-100734524 MsG0580029684.01.T01:CDS 40.0%
GGACAGAAAGGAGTAGAAAA+AGG + Chr5:100728116-100728135 MsG0580029684.01.T01:intron 40.0%
GGGGTGTACCTCTAATTAAT+GGG - Chr5:100728603-100728622 None:intergenic 40.0%
GGGTGTACCTCTAATTAATG+GGG - Chr5:100728602-100728621 None:intergenic 40.0%
GGTCTCTTACCGGATAAAAT+TGG + Chr5:100733840-100733859 MsG0580029684.01.T01:intron 40.0%
GGTGTACCTCTAATTAATGG+GGG - Chr5:100728601-100728620 None:intergenic 40.0%
GTAAGAGACCTACCTTATTG+CGG - Chr5:100733830-100733849 None:intergenic 40.0%
GTACTATCGAGTTATGAACG+CGG + Chr5:100730454-100730473 MsG0580029684.01.T01:intron 40.0%
GTGCTAAGACCACTCAAATA+TGG + Chr5:100727788-100727807 MsG0580029684.01.T01:intron 40.0%
GTGGAAACACCATATTTGAG+TGG - Chr5:100727800-100727819 None:intergenic 40.0%
GTGGTAACACCATATTTGAG+TGG - Chr5:100727868-100727887 None:intergenic 40.0%
TACCCAAAATTGTGCAAGGT+AGG + Chr5:100727600-100727619 MsG0580029684.01.T01:intron 40.0%
TAGACTCACCTATACGAATG+TGG - Chr5:100729065-100729084 None:intergenic 40.0%
TATACCTGTTGGAACATGTG+CGG - Chr5:100733615-100733634 None:intergenic 40.0%
TCAAAGAGCAAGTATTTGGC+TGG + Chr5:100734393-100734412 MsG0580029684.01.T01:CDS 40.0%
TCCTGAAGCCAAATATAGTC+CGG + Chr5:100731166-100731185 MsG0580029684.01.T01:intron 40.0%
TGAAGAGAGTGAAGCAAAGT+TGG + Chr5:100734338-100734357 MsG0580029684.01.T01:CDS 40.0%
TGCACATTAAGCATCACTGT+AGG - Chr5:100729666-100729685 None:intergenic 40.0%
TGCCATCAACTAGTAGTGAA+GGG - Chr5:100734299-100734318 None:intergenic 40.0%
TGGAATAAACAATGTCCCGT+CGG - Chr5:100727951-100727970 None:intergenic 40.0%
TTCCCTTCACTACTAGTTGA+TGG + Chr5:100734294-100734313 MsG0580029684.01.T01:CDS 40.0%
TTGGTAGACGGATATCAACT+CGG - Chr5:100731750-100731769 None:intergenic 40.0%
! AAAAGGGTCTTGTGGAACAA+TGG + Chr5:100734211-100734230 MsG0580029684.01.T01:CDS 40.0%
! ACCTAGAGCGTTCGTTAAAA+CGG - Chr5:100729005-100729024 None:intergenic 40.0%
! AGCCTACCTTGCACAATTTT+GGG - Chr5:100727605-100727624 None:intergenic 40.0%
! ATGATCAAGTTGTAAGCTGG+TGG - Chr5:100734264-100734283 None:intergenic 40.0%
! CAATGAAACTCTTTGGTGTG+TGG + Chr5:100728236-100728255 MsG0580029684.01.T01:intron 40.0%
! CCCATCCTATTGTGTGTTTT+AGG + Chr5:100729307-100729326 MsG0580029684.01.T01:intron 40.0%
! CCTGAAAGTTTTGCGATTCA+TGG - Chr5:100730371-100730390 None:intergenic 40.0%
! GCCGTACTGAAGCAATTTTT+GGG + Chr5:100731856-100731875 MsG0580029684.01.T01:intron 40.0%
! GCTCGAAGAAAGTCACTTTA+AGG + Chr5:100734711-100734730 MsG0580029684.01.T01:three_prime_UTR 40.0%
! GTTCATAATCTGCAGCCTTT+TGG + Chr5:100727333-100727352 MsG0580029684.01.T01:CDS 40.0%
! TAATTTTCTCAGACCGTTGG+AGG - Chr5:100734582-100734601 None:intergenic 40.0%
! TAGCCTACCTTGCACAATTT+TGG - Chr5:100727606-100727625 None:intergenic 40.0%
! TGATCAAGTTGTAAGCTGGT+GGG - Chr5:100734263-100734282 None:intergenic 40.0%
! TGCCGTACTGAAGCAATTTT+TGG + Chr5:100731855-100731874 MsG0580029684.01.T01:intron 40.0%
! TTAAGGGAAGTGAGGGATTT+TGG + Chr5:100734795-100734814 MsG0580029684.01.T01:three_prime_UTR 40.0%
!! AACACTAGTTCTACCCAACA+TGG + Chr5:100728691-100728710 MsG0580029684.01.T01:intron 40.0%
!! ACACTAGTTCTACCCAACAT+GGG + Chr5:100728692-100728711 MsG0580029684.01.T01:intron 40.0%
!! GAAGCAATTTTTGGGAGACT+AGG + Chr5:100731864-100731883 MsG0580029684.01.T01:intron 40.0%
!! GGACTTGTTAAACAAGTCGA+AGG + Chr5:100728143-100728162 MsG0580029684.01.T01:intron 40.0%
AAGGCCCTCCTTGTAATCAA+AGG - Chr5:100730566-100730585 None:intergenic 45.0%
ATGCCGAAGGTCATAAGTGA+TGG - Chr5:100729283-100729302 None:intergenic 45.0%
ATTTCCGCACATGTTCCAAC+AGG + Chr5:100733608-100733627 MsG0580029684.01.T01:intron 45.0%
CAACCAAGTGTATGTTGGGA+CGG - Chr5:100734692-100734711 None:intergenic 45.0%
CAATCTCAATGTGCAGTCAC+TGG + Chr5:100729684-100729703 MsG0580029684.01.T01:intron 45.0%
CGAGCAACCAAGTGTATGTT+GGG - Chr5:100734696-100734715 None:intergenic 45.0%
GACGATGCAACAACTCTTGT+CGG + Chr5:100732072-100732091 MsG0580029684.01.T01:intron 45.0%
GACTGGAGATCCCAAGAAAT+AGG - Chr5:100729245-100729264 None:intergenic 45.0%
GAGAGCTAGCTACTCTCAAA+AGG - Chr5:100729411-100729430 None:intergenic 45.0%
GAGGCAACTTTCACATCCTT+TGG + Chr5:100730430-100730449 MsG0580029684.01.T01:intron 45.0%
GCACAAGAGTTTCACGACAT+CGG + Chr5:100729864-100729883 MsG0580029684.01.T01:intron 45.0%
GCACTACCCAAAATTGTGCA+AGG + Chr5:100727596-100727615 MsG0580029684.01.T01:intron 45.0%
GCTAGCTAAGAACCCTTAGT+CGG - Chr5:100729539-100729558 None:intergenic 45.0%
GGGATTGTCCGGACTATATT+TGG - Chr5:100731177-100731196 None:intergenic 45.0%
GTCGGATCTAATACATTCGG+TGG + Chr5:100729891-100729910 MsG0580029684.01.T01:intron 45.0%
GTGCCATCAACTAGTAGTGA+AGG - Chr5:100734300-100734319 None:intergenic 45.0%
TAAAACGGGATACACGTGCA+AGG - Chr5:100728990-100729009 None:intergenic 45.0%
TATTCTGCTCCGAATCCCAT+AGG + Chr5:100729024-100729043 MsG0580029684.01.T01:intron 45.0%
TATTTAGCGCAACAGGCATC+TGG - Chr5:100732011-100732030 None:intergenic 45.0%
TCCTATAAGAACAAGGCGAG+TGG - Chr5:100731702-100731721 None:intergenic 45.0%
TCGAGCAACCAAGTGTATGT+TGG - Chr5:100734697-100734716 None:intergenic 45.0%
TCTACTCCTTTCTGTCCCTT+CGG - Chr5:100728113-100728132 None:intergenic 45.0%
TCTCATCCATCTATCGCTTC+AGG + Chr5:100729154-100729173 MsG0580029684.01.T01:intron 45.0%
TGGTAGACGGATATCAACTC+GGG - Chr5:100731749-100731768 None:intergenic 45.0%
TTAACCGCACAGTTGTAGCT+GGG - Chr5:100727659-100727678 None:intergenic 45.0%
TTGATTCCGAAGGGACAGAA+AGG + Chr5:100728104-100728123 MsG0580029684.01.T01:intron 45.0%
TTTCACGACATCGGCAATGT+CGG + Chr5:100729873-100729892 MsG0580029684.01.T01:intron 45.0%
! CCTAGAGCGTTCGTTAAAAC+GGG - Chr5:100729004-100729023 None:intergenic 45.0%
! GAAACGGTTTCACCGACTAA+GGG + Chr5:100729524-100729543 MsG0580029684.01.T01:intron 45.0%
! GGGGGTGTACCTCTAATTAA+TGG - Chr5:100728604-100728623 None:intergenic 45.0%
! TCCGGACTATATTTGGCTTC+AGG - Chr5:100731170-100731189 None:intergenic 45.0%
!! GCTCTCTTTAAGACGTTTCG+TGG + Chr5:100727574-100727593 MsG0580029684.01.T01:intron 45.0%
!! GGAGCACCAATTTTGGTAGA+CGG - Chr5:100731762-100731781 None:intergenic 45.0%
!! TGAGGGATTTTGGAAGTGAG+TGG + Chr5:100734805-100734824 MsG0580029684.01.T01:three_prime_UTR 45.0%
!!! TAGCTGGGCTTGTTTTATCC+TGG - Chr5:100727644-100727663 None:intergenic 45.0%
!! AATCAATAAAATTATATATT+TGG + Chr5:100734941-100734960 MsG0580029684.01.T01:three_prime_UTR 5.0%
!!! ATTTATCATTTTTATATTTA+GGG + Chr5:100732248-100732267 MsG0580029684.01.T01:intron 5.0%
!!! TTGATATATATTTTATTATT+TGG - Chr5:100728550-100728569 None:intergenic 5.0%
ACGAATGTGGAACTAAGGGC+CGG - Chr5:100729052-100729071 None:intergenic 50.0%
ACGTCTTAAAGAGAGCGACC+TGG - Chr5:100727570-100727589 None:intergenic 50.0%
CGAGTTATGAACGCGGCTAA+AGG + Chr5:100730461-100730480 MsG0580029684.01.T01:intron 50.0%
CTTGGGATCTCCAGTCATGT+AGG + Chr5:100729249-100729268 MsG0580029684.01.T01:intron 50.0%
GAGCATCAATGGCAGCACTT+AGG - Chr5:100729921-100729940 None:intergenic 50.0%
GATCTCCAGTCATGTAGGTC+GGG + Chr5:100729254-100729273 MsG0580029684.01.T01:intron 50.0%
GGAGTGGAGTACATAGCTAC+AGG - Chr5:100729099-100729118 None:intergenic 50.0%
GGATCTCCAGTCATGTAGGT+CGG + Chr5:100729253-100729272 MsG0580029684.01.T01:intron 50.0%
GGCACACGATGCTTCTAACA+TGG + Chr5:100731885-100731904 MsG0580029684.01.T01:intron 50.0%
GGGGATTGTTGGAACATGTG+TGG - Chr5:100728748-100728767 None:intergenic 50.0%
GTGTGTGTTCCATCCGATGT+GGG + Chr5:100728644-100728663 MsG0580029684.01.T01:intron 50.0%
GTTAACCGCACAGTTGTAGC+TGG - Chr5:100727660-100727679 None:intergenic 50.0%
TAGGATGGGACTAATGCCGA+AGG - Chr5:100729296-100729315 None:intergenic 50.0%
TGATGGCACTCCAGATCCAA+AGG + Chr5:100734311-100734330 MsG0580029684.01.T01:CDS 50.0%
TGTCCGTCCCAACATACACT+TGG + Chr5:100734686-100734705 MsG0580029684.01.T01:three_prime_UTR 50.0%
TGTGTGTGTTCCATCCGATG+TGG + Chr5:100728643-100728662 MsG0580029684.01.T01:intron 50.0%
! AACTAAGGGCCGGTTCCTAT+GGG - Chr5:100729042-100729061 None:intergenic 50.0%
! AATGGGGGCACGACATTAGT+GGG - Chr5:100730959-100730978 None:intergenic 50.0%
! GCCACTCGCCTTGTTCTTAT+AGG + Chr5:100731698-100731717 MsG0580029684.01.T01:intron 50.0%
! GGAAACGGTTTCACCGACTA+AGG + Chr5:100729523-100729542 MsG0580029684.01.T01:intron 50.0%
! TAATGGGGGCACGACATTAG+TGG - Chr5:100730960-100730979 None:intergenic 50.0%
! TACTAGGTTGAGTCACGACC+AGG + Chr5:100727549-100727568 MsG0580029684.01.T01:intron 50.0%
! TCACAAGGGGTTGAGTTGCT+AGG + Chr5:100734174-100734193 MsG0580029684.01.T01:CDS 50.0%
!! AAGAATAGTGGGGGCACTAG+TGG - Chr5:100730989-100731008 None:intergenic 50.0%
!! AGAATAGTGGGGGCACTAGT+GGG - Chr5:100730988-100731007 None:intergenic 50.0%
!! CCCGTTTTAACGAACGCTCT+AGG + Chr5:100729001-100729020 MsG0580029684.01.T01:intron 50.0%
!!! CTGGGCTTGTTTTATCCTGG+AGG - Chr5:100727641-100727660 None:intergenic 50.0%
!!! GGCTTGTTTTATCCTGGAGG+CGG - Chr5:100727638-100727657 None:intergenic 50.0%
AAAGCCCTGCCGTGCGTTTA+TGG + Chr5:100728964-100728983 MsG0580029684.01.T01:intron 55.0%
AAGGCCATAAACGCACGGCA+GGG - Chr5:100728971-100728990 None:intergenic 55.0%
AGTGGAAGTCCCACATCGGA+TGG - Chr5:100728656-100728675 None:intergenic 55.0%
CAAGCCCAGCTACAACTGTG+CGG + Chr5:100727652-100727671 MsG0580029684.01.T01:intron 55.0%
CGTGCAAGGCCATAAACGCA+CGG - Chr5:100728976-100728995 None:intergenic 55.0%
GCTCCGAATCCCATAGGAAC+CGG + Chr5:100729030-100729049 MsG0580029684.01.T01:intron 55.0%
GGTAACCCGACCTACATGAC+TGG - Chr5:100729262-100729281 None:intergenic 55.0%
TAGCGCAACAGGCATCTGGT+CGG - Chr5:100732007-100732026 None:intergenic 55.0%
! ACTAGTGGGGGCTCTAATGG+GGG - Chr5:100730974-100730993 None:intergenic 55.0%
! ATGGGGGCACGACATTAGTG+GGG - Chr5:100730958-100730977 None:intergenic 55.0%
! CACTAGTGGGGGCTCTAATG+GGG - Chr5:100730975-100730994 None:intergenic 55.0%
! GAACTAAGGGCCGGTTCCTA+TGG - Chr5:100729043-100729062 None:intergenic 55.0%
! GCACTAGTGGGGGCTCTAAT+GGG - Chr5:100730976-100730995 None:intergenic 55.0%
!! AATAGTGGGGGCACTAGTGG+GGG - Chr5:100730986-100731005 None:intergenic 55.0%
!! GAATAGTGGGGGCACTAGTG+GGG - Chr5:100730987-100731006 None:intergenic 55.0%
CAAGGCCATAAACGCACGGC+AGG - Chr5:100728972-100728991 None:intergenic 60.0%
GCAACAGGCATCTGGTCGGT+AGG - Chr5:100732003-100732022 None:intergenic 60.0%
! GGCACTAGTGGGGGCTCTAA+TGG - Chr5:100730977-100730996 None:intergenic 60.0%
! GGGCCGGTTCCTATGGGATT+CGG - Chr5:100729036-100729055 None:intergenic 60.0%
! GTTTTATCCTGGAGGCGGCG+TGG - Chr5:100727633-100727652 None:intergenic 60.0%
! TGGGGGCACGACATTAGTGG+GGG - Chr5:100730957-100730976 None:intergenic 60.0%
CTATCAACCACGCCGCCTCC+AGG + Chr5:100727623-100727642 MsG0580029684.01.T01:intron 65.0%
Chromosome Type Strat End Strand Name
Chr5 gene 100727324 100734968 100727324 ID=MsG0580029684.01;Name=MsG0580029684.01
Chr5 mRNA 100727324 100734968 100727324 ID=MsG0580029684.01.T01;Parent=MsG0580029684.01;Name=MsG0580029684.01.T01;_AED=0.48;_eAED=0.49;_QI=0|1|0.5|1|0|0.5|2|375|177
Chr5 exon 100727324 100727396 100727324 ID=MsG0580029684.01.T01:exon:26468;Parent=MsG0580029684.01.T01
Chr5 exon 100734133 100734968 100734133 ID=MsG0580029684.01.T01:exon:26469;Parent=MsG0580029684.01.T01
Chr5 CDS 100727324 100727396 100727324 ID=MsG0580029684.01.T01:cds;Parent=MsG0580029684.01.T01
Chr5 CDS 100734133 100734593 100734133 ID=MsG0580029684.01.T01:cds;Parent=MsG0580029684.01.T01
Chr5 three_prime_UTR 100734594 100734968 100734594 ID=MsG0580029684.01.T01:three_prime_utr;Parent=MsG0580029684.01.T01
Gene Sequence

>MsG0580029684.01.T01

ATGTACTTTGTTCATAATCTGCAGCCTTTTGGAAATGTTCCTGTTATTAAAGATGGAGACTATACCCTTTATGAGTCTAGGGCAATAATGAGATATTATGCAGAAAAATATAGATCACAAGGGGTTGAGTTGCTAGGAAAGACAATAGAAGAAAAGGGTCTTGTGGAACAATGGTTAGAAGTTGAAGCACACAACTTTAACCCACCAGCTTACAACTTGATCATTCATGGTTTGTTCCCTTCACTACTAGTTGATGGCACTCCAGATCCAAAGGTAATTGAAGAGAGTGAAGCAAAGTTGGTGAAAGTGTTGAACATTTATGAAGAGAGGTTATCAAAGAGCAAGTATTTGGCTGGTGATTTTTTCAGCCTTGCTGATATAAGTCACCTTCCATTTACTGATTATATTGTTAATAATATGGGGAAAGATTATTTGATTAAGGAGAGGAAAAATGTAAGTGCTTGGTGGGATGATATAAGTAGTAGACCATCATGGAACAAAATTCTTGAGTTATATAGACCTCCAACGGTCTGA
Protein sequence

>MsG0580029684.01.T01

MYFVHNLQPFGNVPVIKDGDYTLYESRAIMRYYAEKYRSQGVELLGKTIEEKGLVEQWLEVEAHNFNPPAYNLIIHGLFPSLLVDGTPDPKVIEESEAKLVKVLNIYEERLSKSKYLAGDFFSLADISHLPFTDYIVNNMGKDYLIKERKNVSAWWDDISSRPSWNKILELYRPPTV*