Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0280008271.01.T01 | XP_003595077.1 | 92.453 | 159 | 12 | 0 | 1 | 159 | 1 | 159 | 4.44E-103 | 307 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0280008271.01.T01 | Q700E3 | 53.763 | 186 | 67 | 5 | 1 | 169 | 1 | 184 | 1.29E-54 | 177 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0280008271.01.T01 | G7IG90 | 92.453 | 159 | 12 | 0 | 1 | 159 | 1 | 159 | 2.12e-103 | 307 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0080048209.01 | MsG0280008271.01 | 0.809415 | 1.913837e-50 | 1.123025e-47 |
| MsG0180000076.01 | MsG0280008271.01 | 0.807007 | 6.238020e-50 | 3.435720e-47 |
| MsG0180000628.01 | MsG0280008271.01 | 0.808006 | 3.827726e-50 | 2.163862e-47 |
| MsG0180004927.01 | MsG0280008271.01 | 0.814257 | 1.689419e-51 | 1.128040e-48 |
| MsG0180005959.01 | MsG0280008271.01 | 0.843308 | 1.517812e-58 | 2.365289e-55 |
| MsG0280006403.01 | MsG0280008271.01 | 0.812091 | 5.046652e-51 | 3.178812e-48 |
| MsG0280006436.01 | MsG0280008271.01 | 0.813929 | 1.996134e-51 | 1.320965e-48 |
| MsG0280006586.01 | MsG0280008271.01 | 0.813737 | 2.199582e-51 | 1.448149e-48 |
| MsG0280006884.01 | MsG0280008271.01 | 0.819796 | 9.619411e-53 | 7.477341e-50 |
| MsG0280006994.01 | MsG0280008271.01 | 0.807589 | 4.695863e-50 | 2.625608e-47 |
| MsG0280008271.01 | MsG0280009509.01 | 0.822721 | 2.035863e-53 | 1.717839e-50 |
| MsG0280008271.01 | MsG0280009932.01 | 0.826316 | 2.900659e-54 | 2.710872e-51 |
| MsG0280008271.01 | MsG0280010263.01 | 0.805818 | 1.111087e-49 | 5.936027e-47 |
| MsG0280008271.01 | MsG0280010868.01 | 0.814345 | 1.615309e-51 | 1.081156e-48 |
| MsG0280008271.01 | MsG0380014163.01 | 0.804849 | 1.772998e-49 | 9.239752e-47 |
| MsG0280008271.01 | MsG0380016110.01 | 0.811900 | 5.555610e-51 | 3.481112e-48 |
| MsG0280008271.01 | MsG0380016865.01 | 0.818988 | 1.470155e-52 | 1.117461e-49 |
| MsG0280008271.01 | MsG0480018185.01 | 0.838225 | 3.263567e-57 | 4.342477e-54 |
| MsG0280008271.01 | MsG0480018990.01 | 0.809159 | 2.171954e-50 | 1.265781e-47 |
| MsG0280008271.01 | MsG0480019588.01 | 0.813143 | 2.970792e-51 | 1.924443e-48 |
| MsG0280008271.01 | MsG0480022090.01 | 0.851463 | 8.729962e-61 | 1.768353e-57 |
| MsG0280008271.01 | MsG0480022520.01 | 0.802542 | 5.341016e-49 | 2.623186e-46 |
| MsG0280008271.01 | MsG0480022663.01 | 0.857680 | 1.384065e-62 | 3.444015e-59 |
| MsG0280008271.01 | MsG0580025191.01 | 0.833170 | 6.218410e-56 | 7.104462e-53 |
| MsG0280008271.01 | MsG0580027974.01 | 0.804443 | 2.155103e-49 | 1.111297e-46 |
| MsG0280008271.01 | MsG0580029672.01 | 0.802026 | 6.818376e-49 | 3.305125e-46 |
| MsG0280008271.01 | MsG0580029684.01 | 0.821609 | 3.686651e-53 | 3.013578e-50 |
| MsG0280008271.01 | MsG0580029798.01 | 0.809237 | 2.089163e-50 | 1.220123e-47 |
| MsG0280008271.01 | MsG0680034754.01 | 0.849232 | 3.689786e-60 | 6.949874e-57 |
| MsG0280008271.01 | MsG0780037751.01 | 0.801196 | 1.009340e-48 | 4.790850e-46 |
| MsG0280008271.01 | MsG0780038810.01 | 0.820572 | 6.389074e-53 | 5.074021e-50 |
| MsG0280008271.01 | MsG0780039917.01 | 0.818182 | 2.240536e-52 | 1.665320e-49 |
| MsG0280008271.01 | MsG0780039924.01 | 0.868999 | 4.300383e-66 | 1.587825e-62 |
| MsG0280008271.01 | MsG0780039958.01 | 0.827351 | 1.640981e-54 | 1.580431e-51 |
| MsG0280008271.01 | MsG0780040879.01 | 0.812459 | 4.195394e-51 | 2.669110e-48 |
| MsG0280008271.01 | MsG0880042027.01 | 0.830052 | 3.647704e-55 | 3.800416e-52 |
| MsG0280008271.01 | MsG0880046036.01 | 0.817721 | 2.846880e-52 | 2.089433e-49 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0280008271.01.T01 | MTR_2g038040 | 92.453 | 159 | 12 | 0 | 1 | 159 | 1 | 159 | 5.38e-107 | 307 |
| MsG0280008271.01.T01 | MTR_1g112680 | 42.373 | 118 | 55 | 2 | 6 | 110 | 258 | 375 | 2.94e-18 | 82.4 |
| MsG0280008271.01.T01 | MTR_4g057270 | 52.308 | 65 | 31 | 0 | 51 | 115 | 148 | 212 | 1.02e-16 | 77.0 |
| MsG0280008271.01.T01 | MTR_3g498695 | 44.828 | 87 | 44 | 1 | 48 | 130 | 294 | 380 | 2.70e-16 | 76.6 |
| MsG0280008271.01.T01 | MTR_3g498695 | 44.828 | 87 | 44 | 1 | 48 | 130 | 294 | 380 | 2.94e-16 | 76.6 |
| MsG0280008271.01.T01 | MTR_2g084280 | 48.571 | 70 | 36 | 0 | 51 | 120 | 132 | 201 | 4.20e-16 | 75.1 |
| MsG0280008271.01.T01 | MTR_8g064700 | 51.613 | 62 | 30 | 0 | 51 | 112 | 243 | 304 | 3.54e-15 | 73.2 |
| MsG0280008271.01.T01 | MTR_7g083900 | 52.113 | 71 | 31 | 1 | 49 | 119 | 283 | 350 | 5.67e-15 | 72.8 |
| MsG0280008271.01.T01 | MTR_7g083900 | 52.113 | 71 | 31 | 1 | 49 | 119 | 283 | 350 | 5.78e-15 | 72.8 |
| MsG0280008271.01.T01 | MTR_7g117670 | 60.000 | 55 | 22 | 0 | 53 | 107 | 403 | 457 | 8.18e-15 | 72.4 |
| MsG0280008271.01.T01 | MTR_8g027495 | 55.932 | 59 | 26 | 0 | 53 | 111 | 459 | 517 | 1.83e-14 | 71.2 |
| MsG0280008271.01.T01 | MTR_7g096350 | 41.667 | 108 | 49 | 4 | 53 | 160 | 356 | 449 | 2.51e-14 | 70.9 |
| MsG0280008271.01.T01 | MTR_5g030430 | 49.315 | 73 | 34 | 1 | 53 | 122 | 494 | 566 | 8.57e-14 | 69.3 |
| MsG0280008271.01.T01 | MTR_8g067280 | 51.667 | 60 | 29 | 0 | 53 | 112 | 463 | 522 | 1.19e-13 | 68.9 |
| MsG0280008271.01.T01 | MTR_3g030700 | 40.909 | 110 | 52 | 4 | 51 | 156 | 195 | 295 | 4.44e-13 | 67.0 |
| MsG0280008271.01.T01 | MTR_2g081040 | 46.479 | 71 | 35 | 1 | 51 | 121 | 176 | 243 | 1.74e-12 | 65.5 |
| MsG0280008271.01.T01 | MTR_8g024790 | 44.286 | 70 | 28 | 1 | 53 | 111 | 292 | 361 | 1.84e-12 | 65.5 |
| MsG0280008271.01.T01 | MTR_8g024770 | 50.000 | 62 | 24 | 1 | 53 | 114 | 280 | 334 | 2.74e-12 | 65.1 |
| MsG0280008271.01.T01 | MTR_3g111290 | 55.882 | 68 | 29 | 1 | 48 | 115 | 169 | 235 | 3.06e-12 | 64.7 |
| MsG0280008271.01.T01 | MTR_1g072320 | 40.845 | 71 | 42 | 0 | 43 | 113 | 461 | 531 | 4.53e-12 | 64.3 |
| MsG0280008271.01.T01 | MTR_4g092700 | 47.273 | 55 | 29 | 0 | 53 | 107 | 159 | 213 | 8.14e-12 | 63.2 |
| MsG0280008271.01.T01 | MTR_2g010450 | 49.091 | 55 | 28 | 0 | 53 | 107 | 178 | 232 | 8.38e-12 | 63.2 |
| MsG0280008271.01.T01 | MTR_3g104100 | 48.276 | 58 | 30 | 0 | 51 | 108 | 194 | 251 | 1.69e-11 | 62.4 |
| MsG0280008271.01.T01 | MTR_5g014520 | 37.838 | 74 | 43 | 1 | 37 | 107 | 139 | 212 | 3.05e-11 | 61.6 |
| MsG0280008271.01.T01 | MTR_4g097950 | 45.000 | 60 | 33 | 0 | 53 | 112 | 71 | 130 | 3.77e-11 | 60.8 |
| MsG0280008271.01.T01 | MTR_4g097940 | 39.655 | 58 | 35 | 0 | 53 | 110 | 156 | 213 | 8.88e-11 | 60.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0280008271.01.T01 | AT4G29930 | 53.191 | 188 | 72 | 4 | 1 | 176 | 1 | 184 | 4.96e-56 | 176 |
| MsG0280008271.01.T01 | AT4G29930 | 53.763 | 186 | 67 | 5 | 1 | 169 | 1 | 184 | 1.32e-55 | 177 |
| MsG0280008271.01.T01 | AT4G29930 | 53.763 | 186 | 67 | 5 | 1 | 169 | 1 | 184 | 1.32e-55 | 177 |
| MsG0280008271.01.T01 | AT4G29930 | 53.763 | 186 | 67 | 5 | 1 | 169 | 1 | 184 | 1.71e-55 | 177 |
| MsG0280008271.01.T01 | AT4G29930 | 53.409 | 176 | 57 | 4 | 1 | 169 | 1 | 158 | 3.19e-52 | 167 |
| MsG0280008271.01.T01 | AT4G29930 | 53.409 | 176 | 54 | 5 | 1 | 169 | 1 | 155 | 1.78e-51 | 166 |
| MsG0280008271.01.T01 | AT4G29930 | 53.409 | 176 | 54 | 5 | 1 | 169 | 1 | 155 | 1.89e-51 | 165 |
| MsG0280008271.01.T01 | AT5G57150 | 61.728 | 162 | 54 | 6 | 1 | 159 | 1 | 157 | 2.40e-50 | 162 |
| MsG0280008271.01.T01 | AT5G57150 | 61.728 | 162 | 54 | 6 | 1 | 159 | 1 | 157 | 4.19e-50 | 162 |
| MsG0280008271.01.T01 | AT5G57150 | 60.123 | 163 | 56 | 6 | 1 | 159 | 1 | 158 | 3.00e-49 | 159 |
| MsG0280008271.01.T01 | AT5G57150 | 60.123 | 163 | 56 | 6 | 1 | 159 | 1 | 158 | 3.68e-49 | 159 |
| MsG0280008271.01.T01 | AT5G57150 | 60.123 | 163 | 56 | 6 | 1 | 159 | 1 | 158 | 3.23e-48 | 158 |
| MsG0280008271.01.T01 | AT1G01260 | 39.815 | 108 | 61 | 1 | 24 | 131 | 405 | 508 | 4.27e-16 | 76.3 |
| MsG0280008271.01.T01 | AT1G01260 | 39.815 | 108 | 61 | 1 | 24 | 131 | 405 | 508 | 4.27e-16 | 76.3 |
| MsG0280008271.01.T01 | AT1G01260 | 39.815 | 108 | 61 | 1 | 24 | 131 | 405 | 508 | 4.27e-16 | 76.3 |
| MsG0280008271.01.T01 | AT3G26744 | 53.425 | 73 | 31 | 1 | 49 | 121 | 304 | 373 | 5.69e-16 | 75.9 |
| MsG0280008271.01.T01 | AT3G26744 | 53.425 | 73 | 31 | 1 | 49 | 121 | 304 | 373 | 5.75e-16 | 75.9 |
| MsG0280008271.01.T01 | AT3G26744 | 53.425 | 73 | 31 | 1 | 49 | 121 | 304 | 373 | 5.75e-16 | 75.9 |
| MsG0280008271.01.T01 | AT3G26744 | 53.425 | 73 | 31 | 1 | 49 | 121 | 304 | 373 | 5.75e-16 | 75.9 |
| MsG0280008271.01.T01 | AT2G16910 | 55.000 | 60 | 27 | 0 | 51 | 110 | 313 | 372 | 7.94e-16 | 75.5 |
| MsG0280008271.01.T01 | AT2G46510 | 61.818 | 55 | 21 | 0 | 53 | 107 | 396 | 450 | 1.24e-15 | 74.7 |
| MsG0280008271.01.T01 | AT2G28160 | 46.154 | 65 | 35 | 0 | 51 | 115 | 130 | 194 | 1.26e-15 | 73.9 |
| MsG0280008271.01.T01 | AT2G28160 | 46.154 | 65 | 35 | 0 | 51 | 115 | 130 | 194 | 1.40e-15 | 73.9 |
| MsG0280008271.01.T01 | AT1G12860 | 49.398 | 83 | 37 | 2 | 49 | 129 | 264 | 343 | 1.91e-15 | 74.3 |
| MsG0280008271.01.T01 | AT1G12860 | 49.398 | 83 | 37 | 2 | 49 | 129 | 264 | 343 | 2.17e-15 | 73.9 |
| MsG0280008271.01.T01 | AT4G16430 | 46.053 | 76 | 40 | 1 | 53 | 127 | 321 | 396 | 1.56e-14 | 71.6 |
| MsG0280008271.01.T01 | AT1G32640 | 53.333 | 60 | 26 | 1 | 53 | 112 | 453 | 510 | 8.23e-14 | 69.7 |
| MsG0280008271.01.T01 | AT5G46760 | 35.714 | 112 | 63 | 2 | 53 | 161 | 416 | 521 | 2.31e-13 | 68.2 |
| MsG0280008271.01.T01 | AT4G17880 | 42.391 | 92 | 39 | 3 | 54 | 133 | 418 | 507 | 4.85e-13 | 67.4 |
| MsG0280008271.01.T01 | AT5G46830 | 28.834 | 163 | 86 | 5 | 53 | 185 | 344 | 506 | 2.75e-12 | 65.1 |
| MsG0280008271.01.T01 | AT2G22770 | 38.667 | 75 | 46 | 0 | 33 | 107 | 113 | 187 | 1.93e-11 | 62.4 |
| MsG0280008271.01.T01 | AT4G00870 | 43.333 | 60 | 34 | 0 | 53 | 112 | 250 | 309 | 3.51e-11 | 61.6 |
| MsG0280008271.01.T01 | AT1G63650 | 36.275 | 102 | 48 | 3 | 41 | 142 | 397 | 481 | 4.47e-11 | 61.6 |
| MsG0280008271.01.T01 | AT1G63650 | 36.275 | 102 | 48 | 3 | 41 | 142 | 397 | 481 | 4.47e-11 | 61.6 |
| MsG0280008271.01.T01 | AT1G63650 | 36.275 | 102 | 48 | 3 | 41 | 142 | 397 | 481 | 4.47e-11 | 61.6 |
| MsG0280008271.01.T01 | AT1G09530 | 39.241 | 79 | 36 | 2 | 43 | 114 | 331 | 404 | 8.76e-11 | 60.8 |
| MsG0280008271.01.T01 | AT1G09530 | 39.241 | 79 | 36 | 2 | 43 | 114 | 331 | 404 | 8.76e-11 | 60.8 |
| MsG0280008271.01.T01 | AT1G09530 | 39.241 | 79 | 36 | 2 | 43 | 114 | 331 | 404 | 8.76e-11 | 60.8 |
| MsG0280008271.01.T01 | AT1G09530 | 39.241 | 79 | 36 | 2 | 43 | 114 | 331 | 404 | 8.76e-11 | 60.8 |
| MsG0280008271.01.T01 | AT1G09530 | 39.241 | 79 | 36 | 2 | 43 | 114 | 331 | 404 | 8.76e-11 | 60.8 |
| MsG0280008271.01.T01 | AT1G09530 | 39.241 | 79 | 36 | 2 | 43 | 114 | 331 | 404 | 8.76e-11 | 60.8 |
Find 37 sgRNAs with CRISPR-Local
Find 78 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATGTTTACCTTGCTAATATT+TGG | 0.139737 | 2:+28412320 | None:intergenic |
| CTGATCTGTTCTCTTCTTCT+TGG | 0.200519 | 2:+28411363 | None:intergenic |
| TTGAAGTCCTTGAGGTAAAT+TGG | 0.252305 | 2:-28411306 | MsG0280008271.01.T01:CDS |
| ACCTATCAAGCTCTTGGGTT+TGG | 0.289916 | 2:+28412600 | None:intergenic |
| ATCACTGAGCTCACAACTTA+TGG | 0.292560 | 2:-28411214 | MsG0280008271.01.T01:CDS |
| GTGATGAGTACAAGCTTTAC+TGG | 0.315934 | 2:-28412640 | MsG0280008271.01.T01:CDS |
| TGTTTACCTTGCTAATATTT+GGG | 0.326396 | 2:+28412321 | None:intergenic |
| CCTGATGATGCTGCACCATC+TGG | 0.327488 | 2:+28412425 | None:intergenic |
| GAGATAATGGAACTTGAATC+TGG | 0.329852 | 2:-28411448 | MsG0280008271.01.T01:CDS |
| TAGATTGGATTAATACTATT+AGG | 0.340877 | 2:+28411421 | None:intergenic |
| GATTATTCAAGCTGAGATAA+TGG | 0.358095 | 2:-28411461 | MsG0280008271.01.T01:CDS |
| TTTACCTCAAGGACTTCAAT+TGG | 0.374167 | 2:+28411310 | None:intergenic |
| TTGTGGTTGCAGCTGGGGAT+TGG | 0.412240 | 2:-28412483 | MsG0280008271.01.T01:intron |
| TTGCAGCTGGGGATTGGATG+AGG | 0.423798 | 2:-28412477 | MsG0280008271.01.T01:intron |
| CCAAGTTATGTGTGAGTCAA+TGG | 0.427966 | 2:+28411190 | None:intergenic |
| TCCAAACCCAAGAGCTTGAT+AGG | 0.430262 | 2:-28412601 | MsG0280008271.01.T01:intron |
| ACATTGTCTCTGAGAGGAAC+AGG | 0.441534 | 2:-28412388 | MsG0280008271.01.T01:CDS |
| TATCAAGCTCTTGGGTTTGG+AGG | 0.453409 | 2:+28412603 | None:intergenic |
| CCAGATGGTGCAGCATCATC+AGG | 0.460325 | 2:-28412425 | MsG0280008271.01.T01:CDS |
| TCTTGATCAAAATCATAGAT+TGG | 0.462231 | 2:+28411406 | None:intergenic |
| CTGATGATGCTGCACCATCT+GGG | 0.496200 | 2:+28412426 | None:intergenic |
| AAGAGCTTCCTGTGTTGCTA+AGG | 0.527358 | 2:-28411387 | MsG0280008271.01.T01:CDS |
| TTGGGTTTGGAGGAACATGT+TGG | 0.533281 | 2:+28412613 | None:intergenic |
| CTTTCCAATTGAAGTCCTTG+AGG | 0.548914 | 2:-28411314 | MsG0280008271.01.T01:CDS |
| TGATGATGCTGCACCATCTG+GGG | 0.561453 | 2:+28412427 | None:intergenic |
| TTCTTGGACCTTAGCAACAC+AGG | 0.566724 | 2:+28411379 | None:intergenic |
| CTCATCACCAATGTTCTCCA+TGG | 0.572679 | 2:+28412655 | None:intergenic |
| AGAGATGATGATAGAGACAG+TGG | 0.581644 | 2:+28411282 | None:intergenic |
| TGATGAGTACAAGCTTTACT+GGG | 0.584970 | 2:-28412639 | MsG0280008271.01.T01:CDS |
| TTAACAACCATGGAGAACAT+TGG | 0.592898 | 2:-28412662 | None:intergenic |
| AGATAATGGAACTTGAATCT+GGG | 0.607917 | 2:-28411447 | MsG0280008271.01.T01:CDS |
| CAGTGGGCCAATTTACCTCA+AGG | 0.628078 | 2:+28411299 | None:intergenic |
| TATGATTCAAGCTCCCCAGA+TGG | 0.634637 | 2:-28412440 | MsG0280008271.01.T01:CDS |
| CTAAGAACATTGTCTCTGAG+AGG | 0.650410 | 2:-28412394 | MsG0280008271.01.T01:CDS |
| AGTGGTCCCAAATATTAGCA+AGG | 0.659229 | 2:-28412327 | MsG0280008271.01.T01:intron |
| TTGTCTCTGAGAGGAACAGG+AGG | 0.687982 | 2:-28412385 | MsG0280008271.01.T01:CDS |
| GAGATGATGATAGAGACAGT+GGG | 0.708052 | 2:+28411283 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TACTAAATATATGTTATAAA+TGG | + | Chr2:28412000-28412019 | None:intergenic | 10.0% |
| !!! | TATTTATATTTTATTACAGA+CGG | - | Chr2:28411747-28411766 | MsG0280008271.01.T01:intron | 10.0% |
| !! | AGTACAAAAGTAAATTAATT+TGG | - | Chr2:28411687-28411706 | MsG0280008271.01.T01:intron | 15.0% |
| !!! | AATTAATTTACTTTTGTACT+TGG | + | Chr2:28411687-28411706 | None:intergenic | 15.0% |
| !! | CAAATAATTATACCATATGA+TGG | + | Chr2:28412239-28412258 | None:intergenic | 20.0% |
| !! | CATCATATGGTATAATTATT+TGG | - | Chr2:28412237-28412256 | MsG0280008271.01.T01:intron | 20.0% |
| !! | TAGATTGGATTAATACTATT+AGG | + | Chr2:28412430-28412449 | None:intergenic | 20.0% |
| !!! | ATCTTGATAATTGAGATATA+TGG | - | Chr2:28411342-28411361 | MsG0280008271.01.T01:CDS | 20.0% |
| !!! | TTTGTTTTGTTTGAATTAAG+TGG | - | Chr2:28411631-28411650 | MsG0280008271.01.T01:intron | 20.0% |
| !!! | TTTTTTAAACATGTTGTTAG+AGG | - | Chr2:28411810-28411829 | MsG0280008271.01.T01:intron | 20.0% |
| ! | AAAATCGTAATCAAAATCGA+AGG | + | Chr2:28412108-28412127 | None:intergenic | 25.0% |
| ! | AATTTCTTTCTAATGATGAG+TGG | - | Chr2:28412280-28412299 | MsG0280008271.01.T01:intron | 25.0% |
| ! | ATAATTGAGATATATGGTTG+TGG | - | Chr2:28411348-28411367 | MsG0280008271.01.T01:CDS | 25.0% |
| ! | ATGTTTACCTTGCTAATATT+TGG | + | Chr2:28411531-28411550 | None:intergenic | 25.0% |
| ! | TCTTGATCAAAATCATAGAT+TGG | + | Chr2:28412445-28412464 | None:intergenic | 25.0% |
| ! | TGTTTACCTTGCTAATATTT+GGG | + | Chr2:28411530-28411549 | None:intergenic | 25.0% |
| ! | TTGTTTGAATTAAGTGGTTT+GGG | - | Chr2:28411637-28411656 | MsG0280008271.01.T01:intron | 25.0% |
| ! | TTTGTTTGAATTAAGTGGTT+TGG | - | Chr2:28411636-28411655 | MsG0280008271.01.T01:intron | 25.0% |
| !! | GTAAACATCACTAATTTTAG+TGG | - | Chr2:28411543-28411562 | MsG0280008271.01.T01:intron | 25.0% |
| !!! | TAGTGACTTTTTTTTCTAGA+TGG | - | Chr2:28412303-28412322 | MsG0280008271.01.T01:intron | 25.0% |
| AAAATCGCAATCAAAATCGA+TGG | + | Chr2:28411940-28411959 | None:intergenic | 30.0% | |
| GATTATTCAAGCTGAGATAA+TGG | - | Chr2:28412387-28412406 | MsG0280008271.01.T01:CDS | 30.0% | |
| GGAAAATATCAACCATCATA+TGG | - | Chr2:28412224-28412243 | MsG0280008271.01.T01:intron | 30.0% | |
| TCACTTTGATTCAAGTATGA+AGG | - | Chr2:28411287-28411306 | MsG0280008271.01.T01:CDS | 30.0% | |
| TTGATGTCTTTGACATCTAA+TGG | - | Chr2:28412203-28412222 | MsG0280008271.01.T01:intron | 30.0% | |
| ! | AAATCGAAGGATTTTACTCA+AGG | + | Chr2:28412095-28412114 | None:intergenic | 30.0% |
| ! | ATTTTTACCTATCAAGCTCT+TGG | + | Chr2:28411257-28411276 | None:intergenic | 30.0% |
| ! | GACTTTTGTAGAATCGATAT+AGG | + | Chr2:28412073-28412092 | None:intergenic | 30.0% |
| ! | TTTTTACCTATCAAGCTCTT+GGG | + | Chr2:28411256-28411275 | None:intergenic | 30.0% |
| !! | AGATAATGGAACTTGAATCT+GGG | - | Chr2:28412401-28412420 | MsG0280008271.01.T01:CDS | 30.0% |
| !! | CTGTACTTTAGGATTTAAGT+CGG | + | Chr2:28411852-28411871 | None:intergenic | 30.0% |
| !! | TGTACTTTAGGATTTAAGTC+GGG | + | Chr2:28411851-28411870 | None:intergenic | 30.0% |
| CGACTTAAATCCTAAAGTAC+AGG | - | Chr2:28411850-28411869 | MsG0280008271.01.T01:intron | 35.0% | |
| CTAACCTAGGTTGTCAAAAT+CGG | + | Chr2:28412175-28412194 | None:intergenic | 35.0% | |
| TAACCTAGGTTGTCAAAATC+GGG | + | Chr2:28412174-28412193 | None:intergenic | 35.0% | |
| TCGAAAGGGAATAGCAAAAT+CGG | + | Chr2:28412138-28412157 | None:intergenic | 35.0% | |
| TGATGAGTACAAGCTTTACT+GGG | - | Chr2:28411209-28411228 | MsG0280008271.01.T01:CDS | 35.0% | |
| TTGAAGTCCTTGAGGTAAAT+TGG | - | Chr2:28412542-28412561 | MsG0280008271.01.T01:intron | 35.0% | |
| TTTACCTCAAGGACTTCAAT+TGG | + | Chr2:28412541-28412560 | None:intergenic | 35.0% | |
| !! | ATTTTGACAACCTAGGTTAG+AGG | - | Chr2:28412175-28412194 | MsG0280008271.01.T01:intron | 35.0% |
| !! | GAGATAATGGAACTTGAATC+TGG | - | Chr2:28412400-28412419 | MsG0280008271.01.T01:CDS | 35.0% |
| AGAGATGATGATAGAGACAG+TGG | + | Chr2:28412569-28412588 | None:intergenic | 40.0% | |
| AGTGGTCCCAAATATTAGCA+AGG | - | Chr2:28411521-28411540 | MsG0280008271.01.T01:CDS | 40.0% | |
| ATCAATCGAACCTCTAACCT+AGG | + | Chr2:28412188-28412207 | None:intergenic | 40.0% | |
| ATCACTGAGCTCACAACTTA+TGG | - | Chr2:28412634-28412653 | MsG0280008271.01.T01:CDS | 40.0% | |
| CAAAATCGGGACTTTACTTC+AGG | + | Chr2:28412161-28412180 | None:intergenic | 40.0% | |
| CGAAAGGGAATAGCAAAATC+GGG | + | Chr2:28412137-28412156 | None:intergenic | 40.0% | |
| CTAAGAACATTGTCTCTGAG+AGG | - | Chr2:28411454-28411473 | MsG0280008271.01.T01:CDS | 40.0% | |
| CTGATCTGTTCTCTTCTTCT+TGG | + | Chr2:28412488-28412507 | None:intergenic | 40.0% | |
| CTTTCCAATTGAAGTCCTTG+AGG | - | Chr2:28412534-28412553 | MsG0280008271.01.T01:intron | 40.0% | |
| GACTTTACTTCAGGTCGAAA+GGG | + | Chr2:28412152-28412171 | None:intergenic | 40.0% | |
| GAGATGATGATAGAGACAGT+GGG | + | Chr2:28412568-28412587 | None:intergenic | 40.0% | |
| GTCGCAAAATCCTGTACTTT+AGG | + | Chr2:28411863-28411882 | None:intergenic | 40.0% | |
| GTGATGAGTACAAGCTTTAC+TGG | - | Chr2:28411208-28411227 | MsG0280008271.01.T01:CDS | 40.0% | |
| ! | ACTTTTTGCACTTAGAGCAG+TGG | - | Chr2:28411503-28411522 | MsG0280008271.01.T01:CDS | 40.0% |
| !!! | GATTGGATGAGGCTTTTTCA+GGG | - | Chr2:28411382-28411401 | MsG0280008271.01.T01:CDS | 40.0% |
| ACCTATCAAGCTCTTGGGTT+TGG | + | Chr2:28411251-28411270 | None:intergenic | 45.0% | |
| ATATGGTTGTGGTTGCAGCT+GGG | - | Chr2:28411359-28411378 | MsG0280008271.01.T01:CDS | 45.0% | |
| GGACTTTACTTCAGGTCGAA+AGG | + | Chr2:28412153-28412172 | None:intergenic | 45.0% | |
| TATATGGTTGTGGTTGCAGC+TGG | - | Chr2:28411358-28411377 | MsG0280008271.01.T01:CDS | 45.0% | |
| TATCAAGCTCTTGGGTTTGG+AGG | + | Chr2:28411248-28411267 | None:intergenic | 45.0% | |
| TATGATTCAAGCTCCCCAGA+TGG | - | Chr2:28411408-28411427 | MsG0280008271.01.T01:CDS | 45.0% | |
| TCCAAACCCAAGAGCTTGAT+AGG | - | Chr2:28411247-28411266 | MsG0280008271.01.T01:CDS | 45.0% | |
| TTCTTGGACCTTAGCAACAC+AGG | + | Chr2:28412472-28412491 | None:intergenic | 45.0% | |
| TTGGGTTTGGAGGAACATGT+TGG | + | Chr2:28411238-28411257 | None:intergenic | 45.0% | |
| ! | AAGAGCTTCCTGTGTTGCTA+AGG | - | Chr2:28412461-28412480 | MsG0280008271.01.T01:CDS | 45.0% |
| ! | ACATTGTCTCTGAGAGGAAC+AGG | - | Chr2:28411460-28411479 | MsG0280008271.01.T01:CDS | 45.0% |
| !! | AGTCCCGATTTTGACAACCT+AGG | - | Chr2:28412168-28412187 | MsG0280008271.01.T01:intron | 45.0% |
| !! | GGATTGGATGAGGCTTTTTC+AGG | - | Chr2:28411381-28411400 | MsG0280008271.01.T01:CDS | 45.0% |
| CAGTGGGCCAATTTACCTCA+AGG | + | Chr2:28412552-28412571 | None:intergenic | 50.0% | |
| TATGGTTGTGGTTGCAGCTG+GGG | - | Chr2:28411360-28411379 | MsG0280008271.01.T01:CDS | 50.0% | |
| ! | CTGATGATGCTGCACCATCT+GGG | + | Chr2:28411425-28411444 | None:intergenic | 50.0% |
| ! | TGATGATGCTGCACCATCTG+GGG | + | Chr2:28411424-28411443 | None:intergenic | 50.0% |
| ! | TTGTCTCTGAGAGGAACAGG+AGG | - | Chr2:28411463-28411482 | MsG0280008271.01.T01:CDS | 50.0% |
| CCAGATGGTGCAGCATCATC+AGG | - | Chr2:28411423-28411442 | MsG0280008271.01.T01:CDS | 55.0% | |
| TTGCAGCTGGGGATTGGATG+AGG | - | Chr2:28411371-28411390 | MsG0280008271.01.T01:CDS | 55.0% | |
| TTGTGGTTGCAGCTGGGGAT+TGG | - | Chr2:28411365-28411384 | MsG0280008271.01.T01:CDS | 55.0% | |
| ! | CCTGATGATGCTGCACCATC+TGG | + | Chr2:28411426-28411445 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr2 | gene | 28411195 | 28412675 | 28411195 | ID=MsG0280008271.01;Name=MsG0280008271.01 |
| Chr2 | mRNA | 28411195 | 28412675 | 28411195 | ID=MsG0280008271.01.T01;Parent=MsG0280008271.01;Name=MsG0280008271.01.T01;_AED=0.47;_eAED=0.54;_QI=0|0|0|1|1|1|3|0|197 |
| Chr2 | exon | 28412602 | 28412675 | 28412602 | ID=MsG0280008271.01.T01:exon:3578;Parent=MsG0280008271.01.T01 |
| Chr2 | exon | 28412328 | 28412493 | 28412328 | ID=MsG0280008271.01.T01:exon:3577;Parent=MsG0280008271.01.T01 |
| Chr2 | exon | 28411195 | 28411548 | 28411195 | ID=MsG0280008271.01.T01:exon:3576;Parent=MsG0280008271.01.T01 |
| Chr2 | CDS | 28412602 | 28412675 | 28412602 | ID=MsG0280008271.01.T01:cds;Parent=MsG0280008271.01.T01 |
| Chr2 | CDS | 28412328 | 28412493 | 28412328 | ID=MsG0280008271.01.T01:cds;Parent=MsG0280008271.01.T01 |
| Chr2 | CDS | 28411195 | 28411548 | 28411195 | ID=MsG0280008271.01.T01:cds;Parent=MsG0280008271.01.T01 |
| Gene Sequence |
| Protein sequence |
