Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580029809.01.T01 | XP_003617572.1 | 99.121 | 455 | 4 | 0 | 1 | 455 | 505 | 959 | 0 | 922 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580029809.01.T01 | G7K3J9 | 99.121 | 455 | 4 | 0 | 1 | 455 | 505 | 959 | 0.0 | 922 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0180003246.01 | MsG0580029809.01 | 0.862307 | 5.558655e-64 | 1.620389e-60 |
| MsG0480023974.01 | MsG0580029809.01 | 0.801837 | 7.457361e-49 | 3.597571e-46 |
| MsG0380017776.01 | MsG0580029809.01 | 0.800535 | 1.377237e-48 | 6.428406e-46 |
| MsG0380017878.01 | MsG0580029809.01 | 0.800374 | 1.485430e-48 | 6.905427e-46 |
| MsG0580029809.01 | MsG0680035793.01 | 0.803006 | 4.283300e-49 | 2.128592e-46 |
| MsG0580029809.01 | MsG0780039997.01 | 0.823206 | 1.568990e-53 | 1.342124e-50 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580029809.01.T01 | MTR_5g093070 | 99.121 | 455 | 4 | 0 | 1 | 455 | 505 | 959 | 0.0 | 922 |
| MsG0580029809.01.T01 | MTR_3g052530 | 49.890 | 455 | 166 | 6 | 1 | 455 | 405 | 797 | 5.98e-127 | 387 |
| MsG0580029809.01.T01 | MTR_3g052530 | 49.890 | 455 | 166 | 6 | 1 | 455 | 408 | 800 | 7.26e-127 | 387 |
| MsG0580029809.01.T01 | MTR_3g052530 | 49.890 | 455 | 166 | 6 | 1 | 455 | 449 | 841 | 8.45e-127 | 388 |
| MsG0580029809.01.T01 | MTR_3g052530 | 49.890 | 455 | 166 | 6 | 1 | 455 | 446 | 838 | 9.83e-127 | 387 |
| MsG0580029809.01.T01 | MTR_3g052530 | 46.813 | 455 | 151 | 7 | 1 | 455 | 405 | 768 | 1.36e-110 | 343 |
| MsG0580029809.01.T01 | MTR_3g052530 | 46.813 | 455 | 151 | 7 | 1 | 455 | 446 | 809 | 2.91e-110 | 344 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580029809.01.T01 | AT5G55040 | 42.000 | 350 | 176 | 15 | 127 | 455 | 573 | 916 | 1.38e-51 | 187 |
| MsG0580029809.01.T01 | AT5G55040 | 42.000 | 350 | 176 | 15 | 127 | 455 | 573 | 916 | 1.38e-51 | 187 |
Find 127 sgRNAs with CRISPR-Local
Find 136 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCAGACCAGGTTGCTCTTTC+TGG | -0.027911 | 5:+102205526 | None:intergenic |
| GAAGAACAATTTCCCATTTC+AGG | 0.133871 | 5:-102204467 | MsG0580029809.01.T01:CDS |
| TCAAACATCGGTTGATTTAC+AGG | 0.240658 | 5:+102205426 | None:intergenic |
| CATTGGCAAATCTGAGAATA+AGG | 0.244387 | 5:-102205136 | MsG0580029809.01.T01:CDS |
| TTGGGTGAACTAGAACTTTC+AGG | 0.244935 | 5:+102204598 | None:intergenic |
| TGCTGGTGGAATGCCTTTCC+AGG | 0.268794 | 5:-102204494 | MsG0580029809.01.T01:CDS |
| GAAGCAAAACCATCTTTCTT+TGG | 0.282888 | 5:-102205294 | MsG0580029809.01.T01:CDS |
| AGCAGCATCTTTCAAGAATC+AGG | 0.283094 | 5:-102204528 | MsG0580029809.01.T01:CDS |
| GATGCTAACGGAGTTGTTAT+TGG | 0.285709 | 5:-102204952 | MsG0580029809.01.T01:CDS |
| CCATCTTTCTTTGGTTCTGC+TGG | 0.288005 | 5:-102205285 | MsG0580029809.01.T01:CDS |
| CCTTCAGTTCGCCCTGGTTG+TGG | 0.325509 | 5:-102205393 | MsG0580029809.01.T01:CDS |
| AACATCTTCATCAGCTGAAC+TGG | 0.333652 | 5:+102204793 | None:intergenic |
| CTTCAGTTCGCCCTGGTTGT+GGG | 0.344043 | 5:-102205392 | MsG0580029809.01.T01:CDS |
| ATTTGCCAATGTTCCTCGTT+TGG | 0.357902 | 5:+102205148 | None:intergenic |
| ATGTTCCTCGTTTGGACATT+CGG | 0.363448 | 5:+102205156 | None:intergenic |
| TTATTCCTGACTTTGCCATT+AGG | 0.384323 | 5:+102204922 | None:intergenic |
| TCCCCTGCAAAACAATCTTC+TGG | 0.396238 | 5:-102204244 | MsG0580029809.01.T01:CDS |
| AGTGTTTCTTGTTTCTGTCT+TGG | 0.399853 | 5:+102204304 | None:intergenic |
| GGTGGAACTGATGGAGTTAC+TGG | 0.409661 | 5:+102204706 | None:intergenic |
| AGTTTCAGCAGGGGAATGAT+TGG | 0.411063 | 5:+102204732 | None:intergenic |
| TGCACGGGCAGCTGCTGCTG+AGG | 0.412659 | 5:+102204657 | None:intergenic |
| TTGCAGGGGACCCAGGTGAT+TGG | 0.412911 | 5:+102204257 | None:intergenic |
| GTTATTGGAGAGTTACCTAA+TGG | 0.426081 | 5:-102204937 | MsG0580029809.01.T01:CDS |
| CCAGAAAGAGCAACCTGGTC+TGG | 0.426138 | 5:-102205526 | MsG0580029809.01.T01:CDS |
| GCATTGTTCAGATCGCTTGC+GGG | 0.426391 | 5:+102205084 | None:intergenic |
| GTTAAAATGTTAATGTTACT+TGG | 0.428429 | 5:+102204997 | None:intergenic |
| AAAGATGCTGCTGGTACTCT+CGG | 0.433868 | 5:+102204539 | None:intergenic |
| TTCTGTCTTGGTTGACTATG+AGG | 0.433907 | 5:+102204316 | None:intergenic |
| CTCCGTCCAGGTGGAACTGA+TGG | 0.444075 | 5:+102204697 | None:intergenic |
| GGCATTGTTCAGATCGCTTG+CGG | 0.450679 | 5:+102205083 | None:intergenic |
| TTACTTGGTATCATCTCTCT+AGG | 0.453177 | 5:+102205012 | None:intergenic |
| TGGATGTCTGTAGGAGCTGC+AGG | 0.453280 | 5:-102204634 | MsG0580029809.01.T01:CDS |
| GGAAATTGTTCTTCTCTGCC+TGG | 0.456314 | 5:+102204476 | None:intergenic |
| ACAGTGACTCGGCAGAGATC+TGG | 0.457057 | 5:+102204572 | None:intergenic |
| AACGTTGATTTCCAATCACC+TGG | 0.462047 | 5:-102204268 | MsG0580029809.01.T01:CDS |
| TCGACTCCCTTTGTTACTCA+TGG | 0.465568 | 5:-102204838 | MsG0580029809.01.T01:CDS |
| AGCAGCTTTGTTGCCAGACC+AGG | 0.468776 | 5:+102205513 | None:intergenic |
| CAGCAGCAGCTGCCCGTGCA+TGG | 0.471426 | 5:-102204654 | MsG0580029809.01.T01:CDS |
| GTTGATGTACTTTCAGATGA+TGG | 0.472208 | 5:+102204874 | None:intergenic |
| AGTAACAAAGGGAGTCGATC+TGG | 0.474610 | 5:+102204843 | None:intergenic |
| GTTACTGGTGGAGTTTCAGC+AGG | 0.475220 | 5:+102204721 | None:intergenic |
| TGGAAATCAACGTTCAAGTC+AGG | 0.475346 | 5:+102204277 | None:intergenic |
| ATAACAACTCCGTTAGCATC+TGG | 0.478074 | 5:+102204955 | None:intergenic |
| TTAGCATCTGGCTGCTTGAA+AGG | 0.483257 | 5:+102204967 | None:intergenic |
| TGCTGCTGGTACTCTCGGGT+CGG | 0.483370 | 5:+102204544 | None:intergenic |
| ATTGGCAAATCTGAGAATAA+GGG | 0.483865 | 5:-102205135 | MsG0580029809.01.T01:CDS |
| AGGAAAACCATCGTTATTTG+AGG | 0.493854 | 5:-102205358 | MsG0580029809.01.T01:CDS |
| AAAACAATCTTCTGGCGTGC+TGG | 0.500520 | 5:-102204236 | MsG0580029809.01.T01:CDS |
| GGCTGTTTCCCCTCAAACAT+CGG | 0.504048 | 5:+102205414 | None:intergenic |
| TGAGGTACAAGTGCCTGAAA+TGG | 0.506374 | 5:+102204454 | None:intergenic |
| TCTGATGTGATCCCACAGCT+AGG | 0.508731 | 5:+102205315 | None:intergenic |
| AGTTACCTAATGGCAAAGTC+AGG | 0.511497 | 5:-102204927 | MsG0580029809.01.T01:CDS |
| CCTTCAGTTCGCCCTAGCTG+TGG | 0.517901 | 5:-102205327 | MsG0580029809.01.T01:CDS |
| TTGTTCTTCTCTGCCTGGAA+AGG | 0.518743 | 5:+102204481 | None:intergenic |
| CATAGCTGCAAAGCAAGGTC+TGG | 0.519962 | 5:+102204199 | None:intergenic |
| CTTAAGTCTTCTCTCCGTCC+AGG | 0.522084 | 5:+102204685 | None:intergenic |
| GTCTTGGTTGACTATGAGGC+CGG | 0.522172 | 5:+102204320 | None:intergenic |
| GTAAATCAACCGATGTTTGA+GGG | 0.524128 | 5:-102205423 | MsG0580029809.01.T01:CDS |
| GGAAAACCATCGTTATTTGA+GGG | 0.530013 | 5:-102205357 | MsG0580029809.01.T01:CDS |
| GCTGCTGGTACTCTCGGGTC+GGG | 0.532075 | 5:+102204545 | None:intergenic |
| AGTCGGAAGCTGCTACTTGA+GGG | 0.532291 | 5:+102204380 | None:intergenic |
| CCACAACCAGGGCGAACTGA+AGG | 0.535227 | 5:+102205393 | None:intergenic |
| TGTAAATCAACCGATGTTTG+AGG | 0.535695 | 5:-102205424 | MsG0580029809.01.T01:CDS |
| GAATAAGGGTTTGAAACAAG+TGG | 0.536541 | 5:-102205121 | MsG0580029809.01.T01:CDS |
| CGACTCCCTTTGTTACTCAT+GGG | 0.538836 | 5:-102204837 | MsG0580029809.01.T01:CDS |
| CATTTGAAATCTTGCTAAGT+CGG | 0.541533 | 5:+102204363 | None:intergenic |
| CAGGTTGCTCTTTCTGGACA+CGG | 0.543674 | 5:+102205532 | None:intergenic |
| AGGGCTGAGTTTCCTGCTGG+TGG | 0.543891 | 5:-102204508 | MsG0580029809.01.T01:CDS |
| CTAGGTTTAGAAATAGCAGC+AGG | 0.545168 | 5:+102205030 | None:intergenic |
| ATCAGGGCTGAGTTTCCTGC+TGG | 0.545951 | 5:-102204511 | MsG0580029809.01.T01:CDS |
| CTCTTGCCCATGAGTAACAA+AGG | 0.548235 | 5:+102204831 | None:intergenic |
| GAGGTACAAGTGCCTGAAAT+GGG | 0.548720 | 5:+102204455 | None:intergenic |
| AAGTCGGAAGCTGCTACTTG+AGG | 0.549771 | 5:+102204379 | None:intergenic |
| TGAGGCCGGACAGCTTGCCA+AGG | 0.551220 | 5:+102204334 | None:intergenic |
| CTTCAGTTCGCCCTAGCTGT+GGG | 0.551902 | 5:-102205326 | MsG0580029809.01.T01:CDS |
| TTGATTTACAGGATGTTCAA+AGG | 0.553696 | 5:+102205437 | None:intergenic |
| GTGAGATTGATAGAAGCATT+CGG | 0.554077 | 5:+102205189 | None:intergenic |
| GGTTGTGGGCTCACATCAGA+AGG | 0.555300 | 5:-102205378 | MsG0580029809.01.T01:CDS |
| CCAGCAGAACCAAAGAAAGA+TGG | 0.555433 | 5:+102205285 | None:intergenic |
| GAGGCCGGACAGCTTGCCAA+GGG | 0.558424 | 5:+102204335 | None:intergenic |
| TGTAAGCTTCGAAACTAGAC+TGG | 0.563265 | 5:+102205062 | None:intergenic |
| AAGATGCTGCTGGTACTCTC+GGG | 0.565166 | 5:+102204540 | None:intergenic |
| TGGAAAGGCATTCCACCAGC+AGG | 0.565766 | 5:+102204496 | None:intergenic |
| GATGAAGATGTTAGCTGAGA+AGG | 0.570653 | 5:-102204782 | MsG0580029809.01.T01:CDS |
| GGAATAATAGTTTCAATAGA+CGG | 0.570775 | 5:-102204906 | MsG0580029809.01.T01:CDS |
| GTGAGATTGATAGAAGCATT+CGG | 0.571959 | 5:+102205255 | None:intergenic |
| CTCCTACAGACATCCATGCA+CGG | 0.572835 | 5:+102204641 | None:intergenic |
| GGCCGGACAGCTTGCCAAGG+GGG | 0.573701 | 5:+102204337 | None:intergenic |
| TGATTCTTGAAAGATGCTGC+TGG | 0.574888 | 5:+102204530 | None:intergenic |
| AATGTCCAAACGAGGAACAT+TGG | 0.575199 | 5:-102205153 | MsG0580029809.01.T01:CDS |
| AAACAGCCTTCAGTTCGCCC+TGG | 0.578191 | 5:-102205399 | MsG0580029809.01.T01:CDS |
| CTCCATCAGTTCCACCTGGA+CGG | 0.580165 | 5:-102204699 | MsG0580029809.01.T01:CDS |
| TCTTGCCCATGAGTAACAAA+GGG | 0.582554 | 5:+102204832 | None:intergenic |
| TCCTACAGACATCCATGCAC+GGG | 0.584493 | 5:+102204642 | None:intergenic |
| ACTACTAAACTGACAGAGGT+AGG | 0.588422 | 5:-102205486 | MsG0580029809.01.T01:CDS |
| TCTGATGTGAGCCCACAACC+AGG | 0.588475 | 5:+102205381 | None:intergenic |
| CGTGTCCAGAAAGAGCAACC+TGG | 0.589588 | 5:-102205531 | MsG0580029809.01.T01:CDS |
| ACATCTTCATCAGCTGAACT+GGG | 0.591458 | 5:+102204794 | None:intergenic |
| CTGATGTGATCCCACAGCTA+GGG | 0.594431 | 5:+102205316 | None:intergenic |
| CCACAGCTAGGGCGAACTGA+AGG | 0.599075 | 5:+102205327 | None:intergenic |
| GAAAACCATCGTTATTTGAG+GGG | 0.606767 | 5:-102205356 | MsG0580029809.01.T01:CDS |
| GGAGCTGCAGGGTTTAAACA+AGG | 0.607343 | 5:-102204622 | MsG0580029809.01.T01:CDS |
| GCAGCATCTTTCAAGAATCA+GGG | 0.609332 | 5:-102204527 | MsG0580029809.01.T01:CDS |
| GGATGTCTGTAGGAGCTGCA+GGG | 0.611560 | 5:-102204633 | MsG0580029809.01.T01:CDS |
| GCTACTTGAGGGAAAACCAT+AGG | 0.616995 | 5:+102204391 | None:intergenic |
| ATTTACAGGATGTTCAAAGG+TGG | 0.617879 | 5:+102205440 | None:intergenic |
| GCCCGTGCATGGATGTCTGT+AGG | 0.618185 | 5:-102204643 | MsG0580029809.01.T01:CDS |
| TTCAAGCAGCCAGATGCTAA+CGG | 0.619979 | 5:-102204964 | MsG0580029809.01.T01:CDS |
| TACTGGTGGAGTTTCAGCAG+GGG | 0.624064 | 5:+102204723 | None:intergenic |
| CATGTCATAGCTGCAAAGCA+AGG | 0.628750 | 5:+102204194 | None:intergenic |
| TGTTTCCCCTCAAATAACGA+TGG | 0.630758 | 5:+102205351 | None:intergenic |
| GTAACTCCATCAGTTCCACC+TGG | 0.634617 | 5:-102204703 | MsG0580029809.01.T01:CDS |
| TAAATCAACCGATGTTTGAG+GGG | 0.635360 | 5:-102205422 | MsG0580029809.01.T01:CDS |
| CTGATGTGAGCCCACAACCA+GGG | 0.642194 | 5:+102205382 | None:intergenic |
| GGTCGGGTTGTACAGTGACT+CGG | 0.643556 | 5:+102204561 | None:intergenic |
| CTTGAGGGAAAACCATAGGT+CGG | 0.643568 | 5:+102204395 | None:intergenic |
| ACGTTGATTTCCAATCACCT+GGG | 0.657053 | 5:-102204267 | MsG0580029809.01.T01:CDS |
| AAATCAACGTTCAAGTCAGG+CGG | 0.659255 | 5:+102204280 | None:intergenic |
| AGGCCGGACAGCTTGCCAAG+GGG | 0.665984 | 5:+102204336 | None:intergenic |
| AAGTCTTCTCTCCGTCCAGG+TGG | 0.671105 | 5:+102204688 | None:intergenic |
| TTACTGGTGGAGTTTCAGCA+GGG | 0.676518 | 5:+102204722 | None:intergenic |
| GGAACTGATGGAGTTACTGG+TGG | 0.682461 | 5:+102204709 | None:intergenic |
| CCTCAACACATGCATGCAGT+TGG | 0.684889 | 5:-102204436 | MsG0580029809.01.T01:CDS |
| GTCTACTACTAAACTGACAG+AGG | 0.685060 | 5:-102205490 | MsG0580029809.01.T01:CDS |
| GAGCTGCAGGGTTTAAACAA+GGG | 0.689291 | 5:-102204621 | MsG0580029809.01.T01:CDS |
| CCAACTGCATGCATGTGTTG+AGG | 0.699909 | 5:+102204436 | None:intergenic |
| AACAACCGAATGTCCAAACG+AGG | 0.703954 | 5:-102205161 | MsG0580029809.01.T01:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | GTTAAAATGTTAATGTTACT+TGG | + | Chr5:102204747-102204766 | None:intergenic | 20.0% |
| ! | GGAATAATAGTTTCAATAGA+CGG | - | Chr5:102204835-102204854 | MsG0580029809.01.T01:CDS | 25.0% |
| ATTGGCAAATCTGAGAATAA+GGG | - | Chr5:102204606-102204625 | MsG0580029809.01.T01:CDS | 30.0% | |
| TTGATTTACAGGATGTTCAA+AGG | + | Chr5:102204307-102204326 | None:intergenic | 30.0% | |
| ! | CATTTGAAATCTTGCTAAGT+CGG | + | Chr5:102205381-102205400 | None:intergenic | 30.0% |
| AGGAAAACCATCGTTATTTG+AGG | - | Chr5:102204383-102204402 | MsG0580029809.01.T01:CDS | 35.0% | |
| ATTTACAGGATGTTCAAAGG+TGG | + | Chr5:102204304-102204323 | None:intergenic | 35.0% | |
| CATTGGCAAATCTGAGAATA+AGG | - | Chr5:102204605-102204624 | MsG0580029809.01.T01:CDS | 35.0% | |
| GAAAACCATCGTTATTTGAG+GGG | - | Chr5:102204385-102204404 | MsG0580029809.01.T01:CDS | 35.0% | |
| GAAGAACAATTTCCCATTTC+AGG | - | Chr5:102205274-102205293 | MsG0580029809.01.T01:CDS | 35.0% | |
| GAAGCAAAACCATCTTTCTT+TGG | - | Chr5:102204447-102204466 | MsG0580029809.01.T01:CDS | 35.0% | |
| GGAAAACCATCGTTATTTGA+GGG | - | Chr5:102204384-102204403 | MsG0580029809.01.T01:CDS | 35.0% | |
| GTAAATCAACCGATGTTTGA+GGG | - | Chr5:102204318-102204337 | MsG0580029809.01.T01:CDS | 35.0% | |
| GTTATTGGAGAGTTACCTAA+TGG | - | Chr5:102204804-102204823 | MsG0580029809.01.T01:CDS | 35.0% | |
| GTTGATGTACTTTCAGATGA+TGG | + | Chr5:102204870-102204889 | None:intergenic | 35.0% | |
| TAAATCAACCGATGTTTGAG+GGG | - | Chr5:102204319-102204338 | MsG0580029809.01.T01:CDS | 35.0% | |
| TGTAAATCAACCGATGTTTG+AGG | - | Chr5:102204317-102204336 | MsG0580029809.01.T01:CDS | 35.0% | |
| TTACTTGGTATCATCTCTCT+AGG | + | Chr5:102204732-102204751 | None:intergenic | 35.0% | |
| TTATTCCTGACTTTGCCATT+AGG | + | Chr5:102204822-102204841 | None:intergenic | 35.0% | |
| ! | GAATAAGGGTTTGAAACAAG+TGG | - | Chr5:102204620-102204639 | MsG0580029809.01.T01:CDS | 35.0% |
| ! | TCAAACATCGGTTGATTTAC+AGG | + | Chr5:102204318-102204337 | None:intergenic | 35.0% |
| !! | AGTGTTTCTTGTTTCTGTCT+TGG | + | Chr5:102205440-102205459 | None:intergenic | 35.0% |
| !! | GTGAGATTGATAGAAGCATT+CGG | + | Chr5:102204489-102204508 | None:intergenic | 35.0% |
| AAATCAACGTTCAAGTCAGG+CGG | + | Chr5:102205464-102205483 | None:intergenic | 40.0% | |
| AACATCTTCATCAGCTGAAC+TGG | + | Chr5:102204951-102204970 | None:intergenic | 40.0% | |
| AATGTCCAAACGAGGAACAT+TGG | - | Chr5:102204588-102204607 | MsG0580029809.01.T01:CDS | 40.0% | |
| ACATCTTCATCAGCTGAACT+GGG | + | Chr5:102204950-102204969 | None:intergenic | 40.0% | |
| ACTACTAAACTGACAGAGGT+AGG | - | Chr5:102204255-102204274 | MsG0580029809.01.T01:CDS | 40.0% | |
| AGCAGCATCTTTCAAGAATC+AGG | - | Chr5:102205213-102205232 | MsG0580029809.01.T01:CDS | 40.0% | |
| AGTTACCTAATGGCAAAGTC+AGG | - | Chr5:102204814-102204833 | MsG0580029809.01.T01:CDS | 40.0% | |
| ATAACAACTCCGTTAGCATC+TGG | + | Chr5:102204789-102204808 | None:intergenic | 40.0% | |
| ATGTTCCTCGTTTGGACATT+CGG | + | Chr5:102204588-102204607 | None:intergenic | 40.0% | |
| ATTTGCCAATGTTCCTCGTT+TGG | + | Chr5:102204596-102204615 | None:intergenic | 40.0% | |
| CTAGGTTTAGAAATAGCAGC+AGG | + | Chr5:102204714-102204733 | None:intergenic | 40.0% | |
| GATGAAGATGTTAGCTGAGA+AGG | - | Chr5:102204959-102204978 | MsG0580029809.01.T01:CDS | 40.0% | |
| GATGCTAACGGAGTTGTTAT+TGG | - | Chr5:102204789-102204808 | MsG0580029809.01.T01:CDS | 40.0% | |
| GCAGCATCTTTCAAGAATCA+GGG | - | Chr5:102205214-102205233 | MsG0580029809.01.T01:CDS | 40.0% | |
| GTCTACTACTAAACTGACAG+AGG | - | Chr5:102204251-102204270 | MsG0580029809.01.T01:CDS | 40.0% | |
| TCTTGCCCATGAGTAACAAA+GGG | + | Chr5:102204912-102204931 | None:intergenic | 40.0% | |
| TGATTCTTGAAAGATGCTGC+TGG | + | Chr5:102205214-102205233 | None:intergenic | 40.0% | |
| TGGAAATCAACGTTCAAGTC+AGG | + | Chr5:102205467-102205486 | None:intergenic | 40.0% | |
| TGTAAGCTTCGAAACTAGAC+TGG | + | Chr5:102204682-102204701 | None:intergenic | 40.0% | |
| TGTTTCCCCTCAAATAACGA+TGG | + | Chr5:102204393-102204412 | None:intergenic | 40.0% | |
| TTCTGTCTTGGTTGACTATG+AGG | + | Chr5:102205428-102205447 | None:intergenic | 40.0% | |
| TTGGGTGAACTAGAACTTTC+AGG | + | Chr5:102205146-102205165 | None:intergenic | 40.0% | |
| ! | ACAGTTTTCAAACCGACCTA+TGG | - | Chr5:102205334-102205353 | MsG0580029809.01.T01:CDS | 40.0% |
| !! | AACGTTGATTTCCAATCACC+TGG | - | Chr5:102205473-102205492 | MsG0580029809.01.T01:CDS | 40.0% |
| !! | ACGTTGATTTCCAATCACCT+GGG | - | Chr5:102205474-102205493 | MsG0580029809.01.T01:CDS | 40.0% |
| AAAACAATCTTCTGGCGTGC+TGG | - | Chr5:102205505-102205524 | MsG0580029809.01.T01:CDS | 45.0% | |
| AAAGATGCTGCTGGTACTCT+CGG | + | Chr5:102205205-102205224 | None:intergenic | 45.0% | |
| AACAACCGAATGTCCAAACG+AGG | - | Chr5:102204580-102204599 | MsG0580029809.01.T01:CDS | 45.0% | |
| AGTAACAAAGGGAGTCGATC+TGG | + | Chr5:102204901-102204920 | None:intergenic | 45.0% | |
| AGTTTCAGCAGGGGAATGAT+TGG | + | Chr5:102205012-102205031 | None:intergenic | 45.0% | |
| CCAGCAGAACCAAAGAAAGA+TGG | + | Chr5:102204459-102204478 | None:intergenic | 45.0% | |
| CGACTCCCTTTGTTACTCAT+GGG | - | Chr5:102204904-102204923 | MsG0580029809.01.T01:CDS | 45.0% | |
| CTCTTGCCCATGAGTAACAA+AGG | + | Chr5:102204913-102204932 | None:intergenic | 45.0% | |
| CTGACAGAGGTAGGCAAAAA+TGG | - | Chr5:102204264-102204283 | MsG0580029809.01.T01:CDS | 45.0% | |
| CTTGAGGGAAAACCATAGGT+CGG | + | Chr5:102205349-102205368 | None:intergenic | 45.0% | |
| GAGCTGCAGGGTTTAAACAA+GGG | - | Chr5:102205120-102205139 | MsG0580029809.01.T01:CDS | 45.0% | |
| GAGGTACAAGTGCCTGAAAT+GGG | + | Chr5:102205289-102205308 | None:intergenic | 45.0% | |
| GCTACTTGAGGGAAAACCAT+AGG | + | Chr5:102205353-102205372 | None:intergenic | 45.0% | |
| GGAAATTGTTCTTCTCTGCC+TGG | + | Chr5:102205268-102205287 | None:intergenic | 45.0% | |
| TCCCCTGCAAAACAATCTTC+TGG | - | Chr5:102205497-102205516 | MsG0580029809.01.T01:CDS | 45.0% | |
| TCGACTCCCTTTGTTACTCA+TGG | - | Chr5:102204903-102204922 | MsG0580029809.01.T01:CDS | 45.0% | |
| TGAGGTACAAGTGCCTGAAA+TGG | + | Chr5:102205290-102205309 | None:intergenic | 45.0% | |
| TTACTGGTGGAGTTTCAGCA+GGG | + | Chr5:102205022-102205041 | None:intergenic | 45.0% | |
| TTAGCATCTGGCTGCTTGAA+AGG | + | Chr5:102204777-102204796 | None:intergenic | 45.0% | |
| TTCAAGCAGCCAGATGCTAA+CGG | - | Chr5:102204777-102204796 | MsG0580029809.01.T01:CDS | 45.0% | |
| TTGTTCTTCTCTGCCTGGAA+AGG | + | Chr5:102205263-102205282 | None:intergenic | 45.0% | |
| !! | ACGCCAGAAGATTGTTTTGC+AGG | + | Chr5:102205503-102205522 | None:intergenic | 45.0% |
| !! | CCATCTTTCTTTGGTTCTGC+TGG | - | Chr5:102204456-102204475 | MsG0580029809.01.T01:CDS | 45.0% |
| !! | CGCCAGAAGATTGTTTTGCA+GGG | + | Chr5:102205502-102205521 | None:intergenic | 45.0% |
| !! | GCCAGAAGATTGTTTTGCAG+GGG | + | Chr5:102205501-102205520 | None:intergenic | 45.0% |
| !!! | TCGGCAGAGATCTGGTTTTT+GGG | + | Chr5:102205164-102205183 | None:intergenic | 45.0% |
| AAGATGCTGCTGGTACTCTC+GGG | + | Chr5:102205204-102205223 | None:intergenic | 50.0% | |
| CAGGTTGCTCTTTCTGGACA+CGG | + | Chr5:102204212-102204231 | None:intergenic | 50.0% | |
| CATAGCTGCAAAGCAAGGTC+TGG | + | Chr5:102205545-102205564 | None:intergenic | 50.0% | |
| CCAACTGCATGCATGTGTTG+AGG | + | Chr5:102205308-102205327 | None:intergenic | 50.0% | |
| CCTCAACACATGCATGCAGT+TGG | - | Chr5:102205305-102205324 | MsG0580029809.01.T01:CDS | 50.0% | |
| CTCCTACAGACATCCATGCA+CGG | + | Chr5:102205103-102205122 | None:intergenic | 50.0% | |
| CTGATGTGATCCCACAGCTA+GGG | + | Chr5:102204428-102204447 | None:intergenic | 50.0% | |
| CTTAAGTCTTCTCTCCGTCC+AGG | + | Chr5:102205059-102205078 | None:intergenic | 50.0% | |
| GATTTCAAATGCAGCCCCCT+TGG | - | Chr5:102205390-102205409 | MsG0580029809.01.T01:CDS | 50.0% | |
| GCATTGTTCAGATCGCTTGC+GGG | + | Chr5:102204660-102204679 | None:intergenic | 50.0% | |
| GGAACTGATGGAGTTACTGG+TGG | + | Chr5:102205035-102205054 | None:intergenic | 50.0% | |
| GGAGCTGCAGGGTTTAAACA+AGG | - | Chr5:102205119-102205138 | MsG0580029809.01.T01:CDS | 50.0% | |
| GGCATTGTTCAGATCGCTTG+CGG | + | Chr5:102204661-102204680 | None:intergenic | 50.0% | |
| GGTGGAACTGATGGAGTTAC+TGG | + | Chr5:102205038-102205057 | None:intergenic | 50.0% | |
| GTAACTCCATCAGTTCCACC+TGG | - | Chr5:102205038-102205057 | MsG0580029809.01.T01:CDS | 50.0% | |
| GTCTTGGTTGACTATGAGGC+CGG | + | Chr5:102205424-102205443 | None:intergenic | 50.0% | |
| GTTACTGGTGGAGTTTCAGC+AGG | + | Chr5:102205023-102205042 | None:intergenic | 50.0% | |
| TACTGGTGGAGTTTCAGCAG+GGG | + | Chr5:102205021-102205040 | None:intergenic | 50.0% | |
| TCCTACAGACATCCATGCAC+GGG | + | Chr5:102205102-102205121 | None:intergenic | 50.0% | |
| TCTGATGTGATCCCACAGCT+AGG | + | Chr5:102204429-102204448 | None:intergenic | 50.0% | |
| ! | AAGTCGGAAGCTGCTACTTG+AGG | + | Chr5:102205365-102205384 | None:intergenic | 50.0% |
| ! | AGTCGGAAGCTGCTACTTGA+GGG | + | Chr5:102205364-102205383 | None:intergenic | 50.0% |
| ! | GGCTGTTTCCCCTCAAACAT+CGG | + | Chr5:102204330-102204349 | None:intergenic | 50.0% |
| ! | TGAGAAGGCGCAAAAACAGC+AGG | - | Chr5:102204974-102204993 | MsG0580029809.01.T01:CDS | 50.0% |
| !!! | CTCGGCAGAGATCTGGTTTT+TGG | + | Chr5:102205165-102205184 | None:intergenic | 50.0% |
| AAACAGCCTTCAGTTCGCCC+TGG | - | Chr5:102204342-102204361 | MsG0580029809.01.T01:CDS | 55.0% | |
| AAGTCTTCTCTCCGTCCAGG+TGG | + | Chr5:102205056-102205075 | None:intergenic | 55.0% | |
| ATCAGGGCTGAGTTTCCTGC+TGG | - | Chr5:102205230-102205249 | MsG0580029809.01.T01:CDS | 55.0% | |
| CCAGAAAGAGCAACCTGGTC+TGG | - | Chr5:102204215-102204234 | MsG0580029809.01.T01:CDS | 55.0% | |
| CCAGACCAGGTTGCTCTTTC+TGG | + | Chr5:102204218-102204237 | None:intergenic | 55.0% | |
| CGTGTCCAGAAAGAGCAACC+TGG | - | Chr5:102204210-102204229 | MsG0580029809.01.T01:CDS | 55.0% | |
| CTCCATCAGTTCCACCTGGA+CGG | - | Chr5:102205042-102205061 | MsG0580029809.01.T01:CDS | 55.0% | |
| CTGATGTGAGCCCACAACCA+GGG | + | Chr5:102204362-102204381 | None:intergenic | 55.0% | |
| CTTCAGTTCGCCCTAGCTGT+GGG | - | Chr5:102204415-102204434 | MsG0580029809.01.T01:CDS | 55.0% | |
| CTTCAGTTCGCCCTGGTTGT+GGG | - | Chr5:102204349-102204368 | MsG0580029809.01.T01:CDS | 55.0% | |
| GGATGTCTGTAGGAGCTGCA+GGG | - | Chr5:102205108-102205127 | MsG0580029809.01.T01:CDS | 55.0% | |
| GGTTGTGGGCTCACATCAGA+AGG | - | Chr5:102204363-102204382 | MsG0580029809.01.T01:CDS | 55.0% | |
| TCTGATGTGAGCCCACAACC+AGG | + | Chr5:102204363-102204382 | None:intergenic | 55.0% | |
| TGCTGGTGGAATGCCTTTCC+AGG | - | Chr5:102205247-102205266 | MsG0580029809.01.T01:CDS | 55.0% | |
| TGGATGTCTGTAGGAGCTGC+AGG | - | Chr5:102205107-102205126 | MsG0580029809.01.T01:CDS | 55.0% | |
| ! | ACAGTGACTCGGCAGAGATC+TGG | + | Chr5:102205172-102205191 | None:intergenic | 55.0% |
| ! | GGTCGGGTTGTACAGTGACT+CGG | + | Chr5:102205183-102205202 | None:intergenic | 55.0% |
| !! | AGCAGCTTTGTTGCCAGACC+AGG | + | Chr5:102204231-102204250 | None:intergenic | 55.0% |
| !! | GATTGTTTTGCAGGGGACCC+AGG | + | Chr5:102205494-102205513 | None:intergenic | 55.0% |
| !! | TGGAAAGGCATTCCACCAGC+AGG | + | Chr5:102205248-102205267 | None:intergenic | 55.0% |
| AGGGCTGAGTTTCCTGCTGG+TGG | - | Chr5:102205233-102205252 | MsG0580029809.01.T01:CDS | 60.0% | |
| CCACAACCAGGGCGAACTGA+AGG | + | Chr5:102204351-102204370 | None:intergenic | 60.0% | |
| CCACAGCTAGGGCGAACTGA+AGG | + | Chr5:102204417-102204436 | None:intergenic | 60.0% | |
| CCTTCAGTTCGCCCTAGCTG+TGG | - | Chr5:102204414-102204433 | MsG0580029809.01.T01:CDS | 60.0% | |
| CCTTCAGTTCGCCCTGGTTG+TGG | - | Chr5:102204348-102204367 | MsG0580029809.01.T01:CDS | 60.0% | |
| CTCCGTCCAGGTGGAACTGA+TGG | + | Chr5:102205047-102205066 | None:intergenic | 60.0% | |
| GCCCGTGCATGGATGTCTGT+AGG | - | Chr5:102205098-102205117 | MsG0580029809.01.T01:CDS | 60.0% | |
| TGCTGCTGGTACTCTCGGGT+CGG | + | Chr5:102205200-102205219 | None:intergenic | 60.0% | |
| TTGCAGGGGACCCAGGTGAT+TGG | + | Chr5:102205487-102205506 | None:intergenic | 60.0% | |
| AGCCCCCTTGGCAAGCTGTC+CGG | - | Chr5:102205402-102205421 | MsG0580029809.01.T01:CDS | 65.0% | |
| AGGCCGGACAGCTTGCCAAG+GGG | + | Chr5:102205408-102205427 | None:intergenic | 65.0% | |
| GAGGCCGGACAGCTTGCCAA+GGG | + | Chr5:102205409-102205428 | None:intergenic | 65.0% | |
| GCTGCTGGTACTCTCGGGTC+GGG | + | Chr5:102205199-102205218 | None:intergenic | 65.0% | |
| TGAGGCCGGACAGCTTGCCA+AGG | + | Chr5:102205410-102205429 | None:intergenic | 65.0% | |
| CAGCAGCAGCTGCCCGTGCA+TGG | - | Chr5:102205087-102205106 | MsG0580029809.01.T01:CDS | 70.0% | |
| GGCCGGACAGCTTGCCAAGG+GGG | + | Chr5:102205407-102205426 | None:intergenic | 70.0% | |
| TGCACGGGCAGCTGCTGCTG+AGG | + | Chr5:102205087-102205106 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr5 | gene | 102204198 | 102205565 | 102204198 | ID=MsG0580029809.01;Name=MsG0580029809.01 |
| Chr5 | mRNA | 102204198 | 102205565 | 102204198 | ID=MsG0580029809.01.T01;Parent=MsG0580029809.01;Name=MsG0580029809.01.T01;_AED=0.40;_eAED=0.40;_QI=0|-1|0|1|-1|1|1|0|455 |
| Chr5 | exon | 102204198 | 102205565 | 102204198 | ID=MsG0580029809.01.T01:exon:16423;Parent=MsG0580029809.01.T01 |
| Chr5 | CDS | 102204198 | 102205565 | 102204198 | ID=MsG0580029809.01.T01:cds;Parent=MsG0580029809.01.T01 |
| Gene Sequence |
| Protein sequence |
