AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0580030096.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0580030096.01.T01 MTR_5g097510 98.824 510 6 0 1 510 1 510 0.0 1033
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0580030096.01.T01 AT3G07790 65.953 514 155 7 1 500 1 508 0.0 637

Find 161 sgRNAs with CRISPR-Local

Find 172 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAAAGAGAGGTTTGGTTATT+TGG 0.090997 5:+106638708 MsG0580030096.01.T01:CDS
CCAAGGCACACTCGCTTTCT+AGG 0.203184 5:+106639340 MsG0580030096.01.T01:CDS
TCAACTGTTCCGTCCTCTTT+CGG 0.305102 5:-106638997 None:intergenic
TAAGTTGAAGAAGTATGATT+TGG 0.343809 5:+106639080 MsG0580030096.01.T01:CDS
GACTCCGCTGAGGTTGGATA+TGG 0.358284 5:+106639242 MsG0580030096.01.T01:CDS
TGAGAGAGAGGAGGTTGGTG+GGG 0.358560 5:+106638588 MsG0580030096.01.T01:CDS
ACTCCTTTAGATGAATTTGA+TGG 0.360328 5:+106638526 MsG0580030096.01.T01:CDS
GACGCTCGATAATCTTCAAC+TGG 0.362669 5:-106638414 None:intergenic
GTGCTGATGGACCTCATTAT+AGG 0.366493 5:+106639292 MsG0580030096.01.T01:CDS
TCACGAAGCTTTGAGATATC+AGG 0.377393 5:-106638334 None:intergenic
GAGACGAGAGCACAGTTTCC+AGG 0.384491 5:+106639607 MsG0580030096.01.T01:CDS
ATGGTAAAATGATGGATTCT+AGG 0.384635 5:+106638974 MsG0580030096.01.T01:CDS
ATGCTTTATACTCCTGTTGC+TGG 0.386349 5:+106639021 MsG0580030096.01.T01:CDS
GAGGATACGCCGATTGATAT+TGG 0.387615 5:+106639264 MsG0580030096.01.T01:CDS
GTGAGAGAGAGGAGGTTGGT+GGG 0.392719 5:+106638587 MsG0580030096.01.T01:CDS
CACCCGATCAATCTCCTTTG+TGG 0.408243 5:-106638938 None:intergenic
TTGGGTGGCGATGATTCTTC+TGG 0.409052 5:-106638249 None:intergenic
GCCCTTTCCTCCTCGGTCAA+TGG 0.412754 5:-106638898 None:intergenic
TTACCATCAAATTCATCTAA+AGG 0.414284 5:-106638529 None:intergenic
TGGAGAGAGTTAATAGGAAG+AGG 0.414488 5:+106638686 MsG0580030096.01.T01:CDS
AGTATGATTTGGAGGATTTG+AGG 0.418697 5:+106639091 MsG0580030096.01.T01:CDS
GATGTATCATCCTGCTGATC+GGG 0.422916 5:+106638867 MsG0580030096.01.T01:CDS
ATGAGTCTCCGTTTATTACC+TGG 0.423044 5:+106639205 MsG0580030096.01.T01:CDS
GGAGAAAGCGTCCGCATGCT+TGG 0.427787 5:-106639447 None:intergenic
ACCGGAGTAGCACCAGCAAC+AGG 0.428900 5:-106639033 None:intergenic
TCTAGAATTTCGCGTACGCC+AGG 0.432184 5:+106638481 MsG0580030096.01.T01:CDS
GGTGAGAGAGAGGAGGTTGG+TGG 0.433835 5:+106638586 MsG0580030096.01.T01:CDS
CGGGTGAATACTAGGTTTCA+TGG 0.433924 5:+106638955 MsG0580030096.01.T01:CDS
AGCTTCGTGATCGACTTGAT+TGG 0.434526 5:+106638347 MsG0580030096.01.T01:CDS
ATTTCTCCCCAGGTAATAAA+CGG 0.435151 5:-106639213 None:intergenic
GGTGGGGTGGATACAAATCT+TGG 0.439452 5:+106638604 MsG0580030096.01.T01:CDS
GACTCATCAGCTCCCGGCGC+AGG 0.441330 5:-106639189 None:intergenic
GTTGAAGAAGTATGATTTGG+AGG 0.441622 5:+106639083 MsG0580030096.01.T01:CDS
TAGGTTTCATGGTAAAATGA+TGG 0.441894 5:+106638966 MsG0580030096.01.T01:CDS
ACGCCTGTAGTGAATGGTAT+AGG 0.442443 5:+106638553 MsG0580030096.01.T01:CDS
TTCCCAGATTCCAAATAAAA+CGG 0.442492 5:-106639126 None:intergenic
AATAATTCACCAGGGAGGAT+TGG 0.444911 5:-106639652 None:intergenic
GACACACTTCTAACTCTTGT+AGG 0.453365 5:-106639573 None:intergenic
ATTGAAAATTCGGAAATTGA+TGG 0.455174 5:-106638190 None:intergenic
GAGAGAGGAGGTTGGTGGGG+TGG 0.455710 5:+106638591 MsG0580030096.01.T01:CDS
GGGAGGCTGCGCGGAATTTG+AGG 0.456140 5:+106639361 MsG0580030096.01.T01:CDS
CTCTAGCTGGTGATGCCAAA+GGG 0.460267 5:-106639410 None:intergenic
AGTTGGTGAGGGTGAGAGAG+AGG 0.461242 5:+106638576 MsG0580030096.01.T01:CDS
AGATTGATCGGGTGAATACT+AGG 0.462316 5:+106638947 MsG0580030096.01.T01:CDS
AGATACGTACGCTGAAGCTT+TGG 0.463143 5:+106638285 MsG0580030096.01.T01:CDS
ATCGAGCGTCGTCGTGTTGG+CGG 0.464893 5:+106638427 MsG0580030096.01.T01:CDS
TTGAGGATGAGAAGAGGGAT+AGG 0.465463 5:+106638767 MsG0580030096.01.T01:CDS
GAGGGTGAGAGAGAGGAGGT+TGG 0.466915 5:+106638583 MsG0580030096.01.T01:CDS
CTGCTGCTCAGAAGTTCGTT+CGG 0.467055 5:+106639469 MsG0580030096.01.T01:CDS
TTAATAGGAAGAGGAAAGAG+AGG 0.467935 5:+106638695 MsG0580030096.01.T01:CDS
GTGGGGTGGATACAAATCTT+GGG 0.472242 5:+106638605 MsG0580030096.01.T01:CDS
TCCATTGACCGAGGAGGAAA+GGG 0.475778 5:+106638897 MsG0580030096.01.T01:CDS
GGAGGCTGCGCGGAATTTGA+GGG 0.478986 5:+106639362 MsG0580030096.01.T01:CDS
AGGAAGAGGAAAGAGAGGTT+TGG 0.481452 5:+106638700 MsG0580030096.01.T01:CDS
TCAGCTCCCGGCGCAGGAGA+TGG 0.483151 5:-106639183 None:intergenic
GTGTGAATTCGAATGCGAAT+GGG 0.490560 5:+106638737 MsG0580030096.01.T01:CDS
GATTCCAAATAAAACGGATT+CGG 0.495879 5:-106639120 None:intergenic
TGGGCATCACGAATTTGAAC+AGG 0.498249 5:-106638394 None:intergenic
TGAGTCTCCGTTTATTACCT+GGG 0.498919 5:+106639206 MsG0580030096.01.T01:CDS
TGTGCCTTGGCGTCTCTAGC+CGG 0.498944 5:-106639327 None:intergenic
GAGCGTCGTCGTGTTGGCGG+CGG 0.499051 5:+106638430 MsG0580030096.01.T01:CDS
GGAACCTCACCCCGATCAGC+AGG 0.500030 5:-106638877 None:intergenic
CCGAGGTTCTACTCCTGCTC+TGG 0.500944 5:+106639545 MsG0580030096.01.T01:CDS
CCTAGAAAGCGAGTGTGCCT+TGG 0.501070 5:-106639340 None:intergenic
TTCCATCCTTCCAACGTACT+AGG 0.501915 5:-106638823 None:intergenic
TCTAACAGCCCTTTCCTCCT+CGG 0.506551 5:-106638905 None:intergenic
CTCCTAGTACGTTGGAAGGA+TGG 0.508594 5:+106638821 MsG0580030096.01.T01:CDS
TCCTGTTGCTGGTGCTACTC+CGG 0.509016 5:+106639032 MsG0580030096.01.T01:CDS
TGCTATTGAGGATGAGAAGA+GGG 0.510399 5:+106638762 MsG0580030096.01.T01:CDS
ATTACCTGGGGAGAAATTGA+AGG 0.511017 5:+106639219 MsG0580030096.01.T01:CDS
AAGAGGGATAGGATAACTGA+TGG 0.511673 5:+106638778 MsG0580030096.01.T01:CDS
GTTAGAAGTGTGTCGAGGCT+TGG 0.515041 5:+106639582 MsG0580030096.01.T01:CDS
TGAAGGGACTCCGCTGAGGT+TGG 0.515610 5:+106639236 MsG0580030096.01.T01:CDS
AGTCCCTTCAATTTCTCCCC+AGG 0.515971 5:-106639223 None:intergenic
TCGTCGTGTTGGCGGCGGAA+AGG 0.516187 5:+106638435 MsG0580030096.01.T01:CDS
CGAACGAACTTCTGAGCAGC+AGG 0.516613 5:-106639468 None:intergenic
TTCCATTGACCGAGGAGGAA+AGG 0.518003 5:+106638896 MsG0580030096.01.T01:CDS
TTATCAACCTCCTAGTACGT+TGG 0.518734 5:+106638813 MsG0580030096.01.T01:CDS
CTGCCACAAAGGAGATTGAT+CGG 0.521916 5:+106638935 MsG0580030096.01.T01:CDS
CTTGTAGGAGTAGCCAGAGC+AGG 0.524357 5:-106639558 None:intergenic
CTAGCACTTCCACCTCTAGC+TGG 0.534694 5:-106639423 None:intergenic
GCACTACCACCAATATCAAT+CGG 0.536654 5:-106639273 None:intergenic
TGATGTATCATCCTGCTGAT+CGG 0.539603 5:+106638866 MsG0580030096.01.T01:CDS
AAGACGCCATCTCCTGCGCC+GGG 0.539834 5:+106639177 MsG0580030096.01.T01:CDS
CTAGAATCAACCGTATGTAA+AGG 0.540852 5:-106638463 None:intergenic
AAAGGTTACACCTTTACATA+CGG 0.541483 5:+106638453 MsG0580030096.01.T01:CDS
GATAGGATAACTGATGGGTA+TGG 0.544095 5:+106638784 MsG0580030096.01.T01:CDS
CTGCGCGGAATTTGAGGGAG+AGG 0.545174 5:+106639367 MsG0580030096.01.T01:CDS
TATCTTCATCGAGAACCGTT+GGG 0.545347 5:-106638267 None:intergenic
TTATAGGATTCCTTCTGCAC+CGG 0.546166 5:+106639308 MsG0580030096.01.T01:CDS
TGCCACAAAGGAGATTGATC+GGG 0.549952 5:+106638936 MsG0580030096.01.T01:CDS
TGCGAATGGGGATGCTATTG+AGG 0.550684 5:+106638750 MsG0580030096.01.T01:CDS
ACGAATTTGAACAGGATCAC+CGG 0.550766 5:-106638386 None:intergenic
GATGGATTCTAGGCCGAAAG+AGG 0.550871 5:+106638984 MsG0580030096.01.T01:CDS
GCGTCTCTAGCCGGTGCAGA+AGG 0.551262 5:-106639318 None:intergenic
AAGGTGATGGTGATGAGAGA+TGG 0.551914 5:-106638165 None:intergenic
CAAGGCACACTCGCTTTCTA+GGG 0.552815 5:+106639341 MsG0580030096.01.T01:CDS
CCTCTAGCTGGTGATGCCAA+AGG 0.555584 5:-106639411 None:intergenic
ATTATCGAGCGTCGTCGTGT+TGG 0.555596 5:+106638424 MsG0580030096.01.T01:CDS
TTTGGGTAGGTATACTAGTG+AGG 0.559747 5:+106638639 MsG0580030096.01.T01:CDS
TCATCCTGCTGATCGGGGTG+AGG 0.560776 5:+106638873 MsG0580030096.01.T01:CDS
TAAGACGCCATCTCCTGCGC+CGG 0.562026 5:+106639176 MsG0580030096.01.T01:CDS
GTCTCTAACAGATGGAGACC+TGG 0.563518 5:-106639625 None:intergenic
TTACCTGGGGAGAAATTGAA+GGG 0.563643 5:+106639220 MsG0580030096.01.T01:CDS
AGTGTGAATTCGAATGCGAA+TGG 0.564248 5:+106638736 MsG0580030096.01.T01:CDS
TCCGCTGAGGTTGGATATGG+AGG 0.566918 5:+106639245 MsG0580030096.01.T01:CDS
TGCACGGAGCGTCTCGTCAA+CGG 0.569411 5:-106639517 None:intergenic
TTGGAGCCGTCTCTAACAGA+TGG 0.572763 5:-106639633 None:intergenic
AACGGAGACTCATCAGCTCC+CGG 0.574320 5:-106639195 None:intergenic
TCTGGGAAGAAAGCTGAGAA+TGG 0.574364 5:+106639141 MsG0580030096.01.T01:CDS
GATATTGGTGGTAGTGCTGA+TGG 0.576944 5:+106639279 MsG0580030096.01.T01:CDS
ATATGTTACAATAATTCACC+AGG 0.581543 5:-106639661 None:intergenic
ACTCCTATACCATTCACTAC+AGG 0.582411 5:-106638556 None:intergenic
TAGAACCTCGGTAACTTGCA+CGG 0.582531 5:-106639533 None:intergenic
TTTCTAACAAAAGTCGAACC+TGG 0.582688 5:-106638499 None:intergenic
GTATCTTCATCGAGAACCGT+TGG 0.586732 5:-106638268 None:intergenic
GATGGTGATGAGAGATGGAG+TGG 0.587165 5:-106638160 None:intergenic
GAGACGGCTCCAATCCTCCC+TGG 0.587727 5:+106639643 MsG0580030096.01.T01:CDS
CAACCTCCTAGTACGTTGGA+AGG 0.591972 5:+106638817 MsG0580030096.01.T01:CDS
TGGTGAGGGTGAGAGAGAGG+AGG 0.593730 5:+106638579 MsG0580030096.01.T01:CDS
AGGTCTCCATCTGTTAGAGA+CGG 0.599911 5:+106639627 MsG0580030096.01.T01:CDS
GGTAAAACGCCTGTAGTGAA+TGG 0.600706 5:+106638547 MsG0580030096.01.T01:CDS
GAAATTGATGGTGAAGGTGA+TGG 0.607020 5:-106638178 None:intergenic
GATTCTAGGCCGAAAGAGGA+CGG 0.607612 5:+106638988 MsG0580030096.01.T01:CDS
CATCCTTCCAACGTACTAGG+AGG 0.611640 5:-106638820 None:intergenic
ATGCTATTGAGGATGAGAAG+AGG 0.612399 5:+106638761 MsG0580030096.01.T01:CDS
TCTCTAAAAGACATAGGCAC+CGG 0.613339 5:-106639051 None:intergenic
GGCACACTCGCTTTCTAGGG+AGG 0.614241 5:+106639344 MsG0580030096.01.T01:CDS
TAGAATTAAAGCTGCCACAA+AGG 0.616992 5:+106638924 MsG0580030096.01.T01:CDS
AGAGGGATAGGATAACTGAT+GGG 0.617530 5:+106638779 MsG0580030096.01.T01:CDS
GCAGAAGGAATCCTATAATG+AGG 0.620746 5:-106639303 None:intergenic
TGCACCGGCTAGAGACGCCA+AGG 0.620913 5:+106639323 MsG0580030096.01.T01:CDS
TCCGCATCTCTAAAAGACAT+AGG 0.622257 5:-106639057 None:intergenic
AGATGGAGTGGAGAGTGGCC+TGG 0.622406 5:-106638148 None:intergenic
TTGGCATCACCAGCTAGAGG+TGG 0.624280 5:+106639414 MsG0580030096.01.T01:CDS
CTTCATCGAGAACCGTTGGG+TGG 0.630975 5:-106638264 None:intergenic
GTAGTGAATGGTATAGGAGT+TGG 0.631715 5:+106638559 MsG0580030096.01.T01:CDS
AATTCGGAAATTGATGGTGA+AGG 0.635281 5:-106638184 None:intergenic
CGCTTTCTAGGGAGGCTGCG+CGG 0.647590 5:+106639352 MsG0580030096.01.T01:CDS
ATGAGAGATGGAGTGGAGAG+TGG 0.647796 5:-106638153 None:intergenic
CCAGAGCAGGAGTAGAACCT+CGG 0.650467 5:-106639545 None:intergenic
GAAGAATCATCGCCACCCAA+CGG 0.651868 5:+106638252 MsG0580030096.01.T01:CDS
GAGTCTCCGTTTATTACCTG+GGG 0.657058 5:+106639207 MsG0580030096.01.T01:CDS
TCTAGCTGGTGATGCCAAAG+GGG 0.658590 5:-106639409 None:intergenic
CTAGCTGGTGATGCCAAAGG+GGG 0.658606 5:-106639408 None:intergenic
GAATGGTATAGGAGTTGGTG+AGG 0.659364 5:+106638564 MsG0580030096.01.T01:CDS
GATACGCCGATTGATATTGG+TGG 0.660537 5:+106639267 MsG0580030096.01.T01:CDS
ACGCTCCGTGCAAGTTACCG+AGG 0.663268 5:+106639528 MsG0580030096.01.T01:CDS
CCTTTGGCATCACCAGCTAG+AGG 0.665578 5:+106639411 MsG0580030096.01.T01:CDS
TGTGAATTCGAATGCGAATG+GGG 0.667326 5:+106638738 MsG0580030096.01.T01:CDS
ACGCTCGATAATCTTCAACT+GGG 0.673149 5:-106638413 None:intergenic
ATGTATCATCCTGCTGATCG+GGG 0.679689 5:+106638868 MsG0580030096.01.T01:CDS
TATGTTACAATAATTCACCA+GGG 0.700027 5:-106639660 None:intergenic
TGAGGTTCCATTGACCGAGG+AGG 0.702321 5:+106638891 MsG0580030096.01.T01:CDS
AAATTGAAGGGACTCCGCTG+AGG 0.706421 5:+106639232 MsG0580030096.01.T01:CDS
GGGTGAGGTTCCATTGACCG+AGG 0.707171 5:+106638888 MsG0580030096.01.T01:CDS
CAAGAGTTAGAAGTGTGTCG+AGG 0.709924 5:+106639577 MsG0580030096.01.T01:CDS
AATGGTATAGGAGTTGGTGA+GGG 0.713541 5:+106638565 MsG0580030096.01.T01:CDS
GAAGTGCTAGTCCAAGCATG+CGG 0.717682 5:+106639436 MsG0580030096.01.T01:CDS
TCCTCCATATCCAACCTCAG+CGG 0.722979 5:-106639246 None:intergenic
GTTACAATAATTCACCAGGG+AGG 0.723612 5:-106639657 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
! ATTGAAAATTCGGAAATTGA+TGG - Chr5:106638193-106638212 None:intergenic 25.0%
! TTACCATCAAATTCATCTAA+AGG - Chr5:106638532-106638551 None:intergenic 25.0%
!! TAAGTTGAAGAAGTATGATT+TGG + Chr5:106639080-106639099 MsG0580030096.01.T01:CDS 25.0%
!!! AATCAGATTTTTTAGGGTTT+TGG - Chr5:106638216-106638235 None:intergenic 25.0%
!!! ACACTTGAATCAGATTTTTT+AGG - Chr5:106638223-106638242 None:intergenic 25.0%
!!! CACTTGAATCAGATTTTTTA+GGG - Chr5:106638222-106638241 None:intergenic 25.0%
!!! TCAAAGTTTTTCGAAGATTT+TGG + Chr5:106638666-106638685 MsG0580030096.01.T01:CDS 25.0%
AAAGGTTACACCTTTACATA+CGG + Chr5:106638453-106638472 MsG0580030096.01.T01:CDS 30.0%
ACTCCTTTAGATGAATTTGA+TGG + Chr5:106638526-106638545 MsG0580030096.01.T01:CDS 30.0%
TAGGTTTCATGGTAAAATGA+TGG + Chr5:106638966-106638985 MsG0580030096.01.T01:CDS 30.0%
TTCCCAGATTCCAAATAAAA+CGG - Chr5:106639129-106639148 None:intergenic 30.0%
! GATTCCAAATAAAACGGATT+CGG - Chr5:106639123-106639142 None:intergenic 30.0%
!! AGATTTTGGAGAGAGTTAAT+AGG + Chr5:106638680-106638699 MsG0580030096.01.T01:CDS 30.0%
!! ATGGTAAAATGATGGATTCT+AGG + Chr5:106638974-106638993 MsG0580030096.01.T01:CDS 30.0%
!!! AATCCGTTTTATTTGGAATC+TGG + Chr5:106639123-106639142 MsG0580030096.01.T01:CDS 30.0%
!!! AGGGTTTTGGATTGAAAATT+CGG - Chr5:106638203-106638222 None:intergenic 30.0%
!!! ATCCGTTTTATTTGGAATCT+GGG + Chr5:106639124-106639143 MsG0580030096.01.T01:CDS 30.0%
ATTTCTCCCCAGGTAATAAA+CGG - Chr5:106639216-106639235 None:intergenic 35.0%
CTAGAATCAACCGTATGTAA+AGG - Chr5:106638466-106638485 None:intergenic 35.0%
TAGAATTAAAGCTGCCACAA+AGG + Chr5:106638924-106638943 MsG0580030096.01.T01:CDS 35.0%
TTAATAGGAAGAGGAAAGAG+AGG + Chr5:106638695-106638714 MsG0580030096.01.T01:CDS 35.0%
TTTCTAACAAAAGTCGAACC+TGG - Chr5:106638502-106638521 None:intergenic 35.0%
! AGTATGATTTGGAGGATTTG+AGG + Chr5:106639091-106639110 MsG0580030096.01.T01:CDS 35.0%
! GAAAGAGAGGTTTGGTTATT+TGG + Chr5:106638708-106638727 MsG0580030096.01.T01:CDS 35.0%
! GTTGAAGAAGTATGATTTGG+AGG + Chr5:106639083-106639102 MsG0580030096.01.T01:CDS 35.0%
!! AATTCGGAAATTGATGGTGA+AGG - Chr5:106638187-106638206 None:intergenic 35.0%
AAGAGGGATAGGATAACTGA+TGG + Chr5:106638778-106638797 MsG0580030096.01.T01:CDS 40.0%
ACGAATTTGAACAGGATCAC+CGG - Chr5:106638389-106638408 None:intergenic 40.0%
ACGCTCGATAATCTTCAACT+GGG - Chr5:106638416-106638435 None:intergenic 40.0%
ACTCCTATACCATTCACTAC+AGG - Chr5:106638559-106638578 None:intergenic 40.0%
AGAGGGATAGGATAACTGAT+GGG + Chr5:106638779-106638798 MsG0580030096.01.T01:CDS 40.0%
AGATTGATCGGGTGAATACT+AGG + Chr5:106638947-106638966 MsG0580030096.01.T01:CDS 40.0%
AGTGTGAATTCGAATGCGAA+TGG + Chr5:106638736-106638755 MsG0580030096.01.T01:CDS 40.0%
ATGAGTCTCCGTTTATTACC+TGG + Chr5:106639205-106639224 MsG0580030096.01.T01:CDS 40.0%
ATGCTATTGAGGATGAGAAG+AGG + Chr5:106638761-106638780 MsG0580030096.01.T01:CDS 40.0%
ATGCTTTATACTCCTGTTGC+TGG + Chr5:106639021-106639040 MsG0580030096.01.T01:CDS 40.0%
ATTACCTGGGGAGAAATTGA+AGG + Chr5:106639219-106639238 MsG0580030096.01.T01:CDS 40.0%
GACACACTTCTAACTCTTGT+AGG - Chr5:106639576-106639595 None:intergenic 40.0%
GCACTACCACCAATATCAAT+CGG - Chr5:106639276-106639295 None:intergenic 40.0%
GCAGAAGGAATCCTATAATG+AGG - Chr5:106639306-106639325 None:intergenic 40.0%
GTAGTGAATGGTATAGGAGT+TGG + Chr5:106638559-106638578 MsG0580030096.01.T01:CDS 40.0%
GTGTGAATTCGAATGCGAAT+GGG + Chr5:106638737-106638756 MsG0580030096.01.T01:CDS 40.0%
TATCTTCATCGAGAACCGTT+GGG - Chr5:106638270-106638289 None:intergenic 40.0%
TGAGTCTCCGTTTATTACCT+GGG + Chr5:106639206-106639225 MsG0580030096.01.T01:CDS 40.0%
TGATGTATCATCCTGCTGAT+CGG + Chr5:106638866-106638885 MsG0580030096.01.T01:CDS 40.0%
TGCTATTGAGGATGAGAAGA+GGG + Chr5:106638762-106638781 MsG0580030096.01.T01:CDS 40.0%
TGGAGAGAGTTAATAGGAAG+AGG + Chr5:106638686-106638705 MsG0580030096.01.T01:CDS 40.0%
TGGCTTGAAGCGATAAAAAC+CGG + Chr5:106638367-106638386 MsG0580030096.01.T01:CDS 40.0%
TGTGAATTCGAATGCGAATG+GGG + Chr5:106638738-106638757 MsG0580030096.01.T01:CDS 40.0%
TTACCTGGGGAGAAATTGAA+GGG + Chr5:106639220-106639239 MsG0580030096.01.T01:CDS 40.0%
TTATAGGATTCCTTCTGCAC+CGG + Chr5:106639308-106639327 MsG0580030096.01.T01:CDS 40.0%
TTATCAACCTCCTAGTACGT+TGG + Chr5:106638813-106638832 MsG0580030096.01.T01:CDS 40.0%
TTTGGGTAGGTATACTAGTG+AGG + Chr5:106638639-106638658 MsG0580030096.01.T01:CDS 40.0%
! CTTGGGCTTGATCAGTTTTT+GGG + Chr5:106638622-106638641 MsG0580030096.01.T01:CDS 40.0%
! GATAGGATAACTGATGGGTA+TGG + Chr5:106638784-106638803 MsG0580030096.01.T01:CDS 40.0%
! TCCGCATCTCTAAAAGACAT+AGG - Chr5:106639060-106639079 None:intergenic 40.0%
! TCTCTAAAAGACATAGGCAC+CGG - Chr5:106639054-106639073 None:intergenic 40.0%
! TCTTGGGCTTGATCAGTTTT+TGG + Chr5:106638621-106638640 MsG0580030096.01.T01:CDS 40.0%
!! AATGGTATAGGAGTTGGTGA+GGG + Chr5:106638565-106638584 MsG0580030096.01.T01:CDS 40.0%
!! GAAATTGATGGTGAAGGTGA+TGG - Chr5:106638181-106638200 None:intergenic 40.0%
!! GAAGTTTTGTAAACCCCCTT+TGG + Chr5:106639395-106639414 MsG0580030096.01.T01:CDS 40.0%
!! GACTCCGAATCCGTTTTATT+TGG + Chr5:106639116-106639135 MsG0580030096.01.T01:CDS 40.0%
!! GCCTATGTCTTTTAGAGATG+CGG + Chr5:106639056-106639075 MsG0580030096.01.T01:CDS 40.0%
!! TCACGAAGCTTTGAGATATC+AGG - Chr5:106638337-106638356 None:intergenic 40.0%
ACGCCTGTAGTGAATGGTAT+AGG + Chr5:106638553-106638572 MsG0580030096.01.T01:CDS 45.0%
AGATACGTACGCTGAAGCTT+TGG + Chr5:106638285-106638304 MsG0580030096.01.T01:CDS 45.0%
AGGAAGAGGAAAGAGAGGTT+TGG + Chr5:106638700-106638719 MsG0580030096.01.T01:CDS 45.0%
AGGTCTCCATCTGTTAGAGA+CGG + Chr5:106639627-106639646 MsG0580030096.01.T01:CDS 45.0%
ATGTATCATCCTGCTGATCG+GGG + Chr5:106638868-106638887 MsG0580030096.01.T01:CDS 45.0%
CGGGTGAATACTAGGTTTCA+TGG + Chr5:106638955-106638974 MsG0580030096.01.T01:CDS 45.0%
CTGCCACAAAGGAGATTGAT+CGG + Chr5:106638935-106638954 MsG0580030096.01.T01:CDS 45.0%
GACGCTCGATAATCTTCAAC+TGG - Chr5:106638417-106638436 None:intergenic 45.0%
GAGTCTCCGTTTATTACCTG+GGG + Chr5:106639207-106639226 MsG0580030096.01.T01:CDS 45.0%
GATGTATCATCCTGCTGATC+GGG + Chr5:106638867-106638886 MsG0580030096.01.T01:CDS 45.0%
GGTAAAACGCCTGTAGTGAA+TGG + Chr5:106638547-106638566 MsG0580030096.01.T01:CDS 45.0%
GTATCTTCATCGAGAACCGT+TGG - Chr5:106638271-106638290 None:intergenic 45.0%
GTGGGGTGGATACAAATCTT+GGG + Chr5:106638605-106638624 MsG0580030096.01.T01:CDS 45.0%
TCAACTGTTCCGTCCTCTTT+CGG - Chr5:106639000-106639019 None:intergenic 45.0%
TCTGGGAAGAAAGCTGAGAA+TGG + Chr5:106639141-106639160 MsG0580030096.01.T01:CDS 45.0%
TGCCACAAAGGAGATTGATC+GGG + Chr5:106638936-106638955 MsG0580030096.01.T01:CDS 45.0%
TGGGCATCACGAATTTGAAC+AGG - Chr5:106638397-106638416 None:intergenic 45.0%
TTCCATCCTTCCAACGTACT+AGG - Chr5:106638826-106638845 None:intergenic 45.0%
TTGAGGATGAGAAGAGGGAT+AGG + Chr5:106638767-106638786 MsG0580030096.01.T01:CDS 45.0%
! AAGGTGATGGTGATGAGAGA+TGG - Chr5:106638168-106638187 None:intergenic 45.0%
! CAAGAGTTAGAAGTGTGTCG+AGG + Chr5:106639577-106639596 MsG0580030096.01.T01:CDS 45.0%
! GAGGATACGCCGATTGATAT+TGG + Chr5:106639264-106639283 MsG0580030096.01.T01:CDS 45.0%
! GATACGCCGATTGATATTGG+TGG + Chr5:106639267-106639286 MsG0580030096.01.T01:CDS 45.0%
! GATATTGGTGGTAGTGCTGA+TGG + Chr5:106639279-106639298 MsG0580030096.01.T01:CDS 45.0%
! GTGCTGATGGACCTCATTAT+AGG + Chr5:106639292-106639311 MsG0580030096.01.T01:CDS 45.0%
! TAGAACCTCGGTAACTTGCA+CGG - Chr5:106639536-106639555 None:intergenic 45.0%
!! AGCTTCGTGATCGACTTGAT+TGG + Chr5:106638347-106638366 MsG0580030096.01.T01:CDS 45.0%
!! GAATGGTATAGGAGTTGGTG+AGG + Chr5:106638564-106638583 MsG0580030096.01.T01:CDS 45.0%
!!! GGCTTGATCAGTTTTTGGGT+AGG + Chr5:106638626-106638645 MsG0580030096.01.T01:CDS 45.0%
AAATTGAAGGGACTCCGCTG+AGG + Chr5:106639232-106639251 MsG0580030096.01.T01:CDS 50.0%
AGTCCCTTCAATTTCTCCCC+AGG - Chr5:106639226-106639245 None:intergenic 50.0%
ATGAGAGATGGAGTGGAGAG+TGG - Chr5:106638156-106638175 None:intergenic 50.0%
CAACCTCCTAGTACGTTGGA+AGG + Chr5:106638817-106638836 MsG0580030096.01.T01:CDS 50.0%
CAAGGCACACTCGCTTTCTA+GGG + Chr5:106639341-106639360 MsG0580030096.01.T01:CDS 50.0%
CACCCGATCAATCTCCTTTG+TGG - Chr5:106638941-106638960 None:intergenic 50.0%
CATCCTTCCAACGTACTAGG+AGG - Chr5:106638823-106638842 None:intergenic 50.0%
CTCCTAGTACGTTGGAAGGA+TGG + Chr5:106638821-106638840 MsG0580030096.01.T01:CDS 50.0%
CTGCTGCTCAGAAGTTCGTT+CGG + Chr5:106639469-106639488 MsG0580030096.01.T01:CDS 50.0%
GAAGAATCATCGCCACCCAA+CGG + Chr5:106638252-106638271 MsG0580030096.01.T01:CDS 50.0%
GATTCTAGGCCGAAAGAGGA+CGG + Chr5:106638988-106639007 MsG0580030096.01.T01:CDS 50.0%
GGTGGGGTGGATACAAATCT+TGG + Chr5:106638604-106638623 MsG0580030096.01.T01:CDS 50.0%
GTCTCTAACAGATGGAGACC+TGG - Chr5:106639628-106639647 None:intergenic 50.0%
TCCATTGACCGAGGAGGAAA+GGG + Chr5:106638897-106638916 MsG0580030096.01.T01:CDS 50.0%
TCCTCCATATCCAACCTCAG+CGG - Chr5:106639249-106639268 None:intergenic 50.0%
TCTAACAGCCCTTTCCTCCT+CGG - Chr5:106638908-106638927 None:intergenic 50.0%
TGCGAATGGGGATGCTATTG+AGG + Chr5:106638750-106638769 MsG0580030096.01.T01:CDS 50.0%
TTCCATTGACCGAGGAGGAA+AGG + Chr5:106638896-106638915 MsG0580030096.01.T01:CDS 50.0%
TTGGAGCCGTCTCTAACAGA+TGG - Chr5:106639636-106639655 None:intergenic 50.0%
TTGGGTGGCGATGATTCTTC+TGG - Chr5:106638252-106638271 None:intergenic 50.0%
! ATTATCGAGCGTCGTCGTGT+TGG + Chr5:106638424-106638443 MsG0580030096.01.T01:CDS 50.0%
! CTCTAGCTGGTGATGCCAAA+GGG - Chr5:106639413-106639432 None:intergenic 50.0%
! GAAGTGCTAGTCCAAGCATG+CGG + Chr5:106639436-106639455 MsG0580030096.01.T01:CDS 50.0%
! GATGGATTCTAGGCCGAAAG+AGG + Chr5:106638984-106639003 MsG0580030096.01.T01:CDS 50.0%
! GATGGTGATGAGAGATGGAG+TGG - Chr5:106638163-106638182 None:intergenic 50.0%
! GTTAGAAGTGTGTCGAGGCT+TGG + Chr5:106639582-106639601 MsG0580030096.01.T01:CDS 50.0%
! TCTAGAATTTCGCGTACGCC+AGG + Chr5:106638481-106638500 MsG0580030096.01.T01:CDS 50.0%
! TCTAGCTGGTGATGCCAAAG+GGG - Chr5:106639412-106639431 None:intergenic 50.0%
AACGGAGACTCATCAGCTCC+CGG - Chr5:106639198-106639217 None:intergenic 55.0%
CCAAGGCACACTCGCTTTCT+AGG + Chr5:106639340-106639359 MsG0580030096.01.T01:CDS 55.0%
CCAGAGCAGGAGTAGAACCT+CGG - Chr5:106639548-106639567 None:intergenic 55.0%
CCTAGAAAGCGAGTGTGCCT+TGG - Chr5:106639343-106639362 None:intergenic 55.0%
CCTTTGGCATCACCAGCTAG+AGG + Chr5:106639411-106639430 MsG0580030096.01.T01:CDS 55.0%
CGAACGAACTTCTGAGCAGC+AGG - Chr5:106639471-106639490 None:intergenic 55.0%
CTAGCACTTCCACCTCTAGC+TGG - Chr5:106639426-106639445 None:intergenic 55.0%
CTTCATCGAGAACCGTTGGG+TGG - Chr5:106638267-106638286 None:intergenic 55.0%
CTTGTAGGAGTAGCCAGAGC+AGG - Chr5:106639561-106639580 None:intergenic 55.0%
GACTCCGCTGAGGTTGGATA+TGG + Chr5:106639242-106639261 MsG0580030096.01.T01:CDS 55.0%
TCCGCTGAGGTTGGATATGG+AGG + Chr5:106639245-106639264 MsG0580030096.01.T01:CDS 55.0%
TGAGGTTCCATTGACCGAGG+AGG + Chr5:106638891-106638910 MsG0580030096.01.T01:CDS 55.0%
TTGGCATCACCAGCTAGAGG+TGG + Chr5:106639414-106639433 MsG0580030096.01.T01:CDS 55.0%
! CCTCTAGCTGGTGATGCCAA+AGG - Chr5:106639414-106639433 None:intergenic 55.0%
! CTAGCTGGTGATGCCAAAGG+GGG - Chr5:106639411-106639430 None:intergenic 55.0%
! GAGACGAGAGCACAGTTTCC+AGG + Chr5:106639607-106639626 MsG0580030096.01.T01:CDS 55.0%
! GTGAGAGAGAGGAGGTTGGT+GGG + Chr5:106638587-106638606 MsG0580030096.01.T01:CDS 55.0%
!! AGTTGGTGAGGGTGAGAGAG+AGG + Chr5:106638576-106638595 MsG0580030096.01.T01:CDS 55.0%
!! TCCTGTTGCTGGTGCTACTC+CGG + Chr5:106639032-106639051 MsG0580030096.01.T01:CDS 55.0%
!! TGAGAGAGAGGAGGTTGGTG+GGG + Chr5:106638588-106638607 MsG0580030096.01.T01:CDS 55.0%
ACCGGAGTAGCACCAGCAAC+AGG - Chr5:106639036-106639055 None:intergenic 60.0%
ACGCTCCGTGCAAGTTACCG+AGG + Chr5:106639528-106639547 MsG0580030096.01.T01:CDS 60.0%
AGATGGAGTGGAGAGTGGCC+TGG - Chr5:106638151-106638170 None:intergenic 60.0%
CCGAGGTTCTACTCCTGCTC+TGG + Chr5:106639545-106639564 MsG0580030096.01.T01:CDS 60.0%
CTGCGCGGAATTTGAGGGAG+AGG + Chr5:106639367-106639386 MsG0580030096.01.T01:CDS 60.0%
GAGGGTGAGAGAGAGGAGGT+TGG + Chr5:106638583-106638602 MsG0580030096.01.T01:CDS 60.0%
GCCCTTTCCTCCTCGGTCAA+TGG - Chr5:106638901-106638920 None:intergenic 60.0%
GGAGGCTGCGCGGAATTTGA+GGG + Chr5:106639362-106639381 MsG0580030096.01.T01:CDS 60.0%
GGGTGAGGTTCCATTGACCG+AGG + Chr5:106638888-106638907 MsG0580030096.01.T01:CDS 60.0%
GGTGAGAGAGAGGAGGTTGG+TGG + Chr5:106638586-106638605 MsG0580030096.01.T01:CDS 60.0%
TAAGACGCCATCTCCTGCGC+CGG + Chr5:106639176-106639195 MsG0580030096.01.T01:CDS 60.0%
TCATCCTGCTGATCGGGGTG+AGG + Chr5:106638873-106638892 MsG0580030096.01.T01:CDS 60.0%
TGAAGGGACTCCGCTGAGGT+TGG + Chr5:106639236-106639255 MsG0580030096.01.T01:CDS 60.0%
TGGTGAGGGTGAGAGAGAGG+AGG + Chr5:106638579-106638598 MsG0580030096.01.T01:CDS 60.0%
TGTGCCTTGGCGTCTCTAGC+CGG - Chr5:106639330-106639349 None:intergenic 60.0%
! ATCGAGCGTCGTCGTGTTGG+CGG + Chr5:106638427-106638446 MsG0580030096.01.T01:CDS 60.0%
! GGCACACTCGCTTTCTAGGG+AGG + Chr5:106639344-106639363 MsG0580030096.01.T01:CDS 60.0%
! TGCACGGAGCGTCTCGTCAA+CGG - Chr5:106639520-106639539 None:intergenic 60.0%
!! GGAGAAAGCGTCCGCATGCT+TGG - Chr5:106639450-106639469 None:intergenic 60.0%
AAGACGCCATCTCCTGCGCC+GGG + Chr5:106639177-106639196 MsG0580030096.01.T01:CDS 65.0%
GAGACGGCTCCAATCCTCCC+TGG + Chr5:106639643-106639662 MsG0580030096.01.T01:CDS 65.0%
GCGTCTCTAGCCGGTGCAGA+AGG - Chr5:106639321-106639340 None:intergenic 65.0%
GGAACCTCACCCCGATCAGC+AGG - Chr5:106638880-106638899 None:intergenic 65.0%
GGGAGGCTGCGCGGAATTTG+AGG + Chr5:106639361-106639380 MsG0580030096.01.T01:CDS 65.0%
! CGCTTTCTAGGGAGGCTGCG+CGG + Chr5:106639352-106639371 MsG0580030096.01.T01:CDS 65.0%
! TCGTCGTGTTGGCGGCGGAA+AGG + Chr5:106638435-106638454 MsG0580030096.01.T01:CDS 65.0%
!! GAGAGAGGAGGTTGGTGGGG+TGG + Chr5:106638591-106638610 MsG0580030096.01.T01:CDS 65.0%
!! TGCACCGGCTAGAGACGCCA+AGG + Chr5:106639323-106639342 MsG0580030096.01.T01:CDS 65.0%
GACTCATCAGCTCCCGGCGC+AGG - Chr5:106639192-106639211 None:intergenic 70.0%
TCAGCTCCCGGCGCAGGAGA+TGG - Chr5:106639186-106639205 None:intergenic 70.0%
! GAGCGTCGTCGTGTTGGCGG+CGG + Chr5:106638430-106638449 MsG0580030096.01.T01:CDS 70.0%
Chromosome Type Strat End Strand Name
Chr5 gene 106638136 106639668 106638136 ID=MsG0580030096.01;Name=MsG0580030096.01
Chr5 mRNA 106638136 106639668 106638136 ID=MsG0580030096.01.T01;Parent=MsG0580030096.01;Name=MsG0580030096.01.T01;_AED=0.26;_eAED=0.26;_QI=0|-1|0|1|-1|1|1|0|510
Chr5 exon 106638136 106639668 106638136 ID=MsG0580030096.01.T01:exon:14656;Parent=MsG0580030096.01.T01
Chr5 CDS 106638136 106639668 106638136 ID=MsG0580030096.01.T01:cds;Parent=MsG0580030096.01.T01
Gene Sequence

>MsG0580030096.01.T01

ATGCTTCAATCACCAGGCCACTCTCCACTCCATCTCTCATCACCATCACCTTCACCATCAATTTCCGAATTTTCAATCCAAAACCCTAAAAAATCTGATTCAAGTGTTCAACACCAGAAGAATCATCGCCACCCAACGGTTCTCGATGAAGATACGTACGCTGAAGCTTTGGAGAAGATAATCGAGCGTGATTACTTTCCTGATATCTCAAAGCTTCGTGATCGACTTGATTGGCTTGAAGCGATAAAAACCGGTGATCCTGTTCAAATTCGTGATGCCCAGTTGAAGATTATCGAGCGTCGTCGTGTTGGCGGCGGAAAGGTTACACCTTTACATACGGTTGATTCTAGAATTTCGCGTACGCCAGGTTCGACTTTTGTTAGAAATTTTACTCCTTTAGATGAATTTGATGGTAAAACGCCTGTAGTGAATGGTATAGGAGTTGGTGAGGGTGAGAGAGAGGAGGTTGGTGGGGTGGATACAAATCTTGGGCTTGATCAGTTTTTGGGTAGGTATACTAGTGAGGATAATCAAAGTTTTTCGAAGATTTTGGAGAGAGTTAATAGGAAGAGGAAAGAGAGGTTTGGTTATTTGGAAGATAGTGTGAATTCGAATGCGAATGGGGATGCTATTGAGGATGAGAAGAGGGATAGGATAACTGATGGGTATGGTACTTCTTATCAACCTCCTAGTACGTTGGAAGGATGGAATTATACAGCGAAGAATTTGTTGATGTATCATCCTGCTGATCGGGGTGAGGTTCCATTGACCGAGGAGGAAAGGGCTGTTAGAATTAAAGCTGCCACAAAGGAGATTGATCGGGTGAATACTAGGTTTCATGGTAAAATGATGGATTCTAGGCCGAAAGAGGACGGAACAGTTGAGATGCTTTATACTCCTGTTGCTGGTGCTACTCCGGTGCCTATGTCTTTTAGAGATGCGGATAAGTTGAAGAAGTATGATTTGGAGGATTTGAGGAAGACTCCGAATCCGTTTTATTTGGAATCTGGGAAGAAAGCTGAGAATGGTTATAGCTATGTTAAGACGCCATCTCCTGCGCCGGGAGCTGATGAGTCTCCGTTTATTACCTGGGGAGAAATTGAAGGGACTCCGCTGAGGTTGGATATGGAGGATACGCCGATTGATATTGGTGGTAGTGCTGATGGACCTCATTATAGGATTCCTTCTGCACCGGCTAGAGACGCCAAGGCACACTCGCTTTCTAGGGAGGCTGCGCGGAATTTGAGGGAGAGGTCGAAGAAGTTTTGTAAACCCCCTTTGGCATCACCAGCTAGAGGTGGAAGTGCTAGTCCAAGCATGCGGACGCTTTCTCCTGCTGCTCAGAAGTTCGTTCGGAATGCAATTGCAAAGTCATCGTCTTCCGTTGACGAGACGCTCCGTGCAAGTTACCGAGGTTCTACTCCTGCTCTGGCTACTCCTACAAGAGTTAGAAGTGTGTCGAGGCTTGGTAGAGACGAGAGCACAGTTTCCAGGTCTCCATCTGTTAGAGACGGCTCCAATCCTCCCTGGTGA

Protein sequence

>MsG0580030096.01.T01

MLQSPGHSPLHLSSPSPSPSISEFSIQNPKKSDSSVQHQKNHRHPTVLDEDTYAEALEKIIERDYFPDISKLRDRLDWLEAIKTGDPVQIRDAQLKIIERRRVGGGKVTPLHTVDSRISRTPGSTFVRNFTPLDEFDGKTPVVNGIGVGEGEREEVGGVDTNLGLDQFLGRYTSEDNQSFSKILERVNRKRKERFGYLEDSVNSNANGDAIEDEKRDRITDGYGTSYQPPSTLEGWNYTAKNLLMYHPADRGEVPLTEEERAVRIKAATKEIDRVNTRFHGKMMDSRPKEDGTVEMLYTPVAGATPVPMSFRDADKLKKYDLEDLRKTPNPFYLESGKKAENGYSYVKTPSPAPGADESPFITWGEIEGTPLRLDMEDTPIDIGGSADGPHYRIPSAPARDAKAHSLSREAARNLRERSKKFCKPPLASPARGGSASPSMRTLSPAAQKFVRNAIAKSSSSVDETLRASYRGSTPALATPTRVRSVSRLGRDESTVSRSPSVRDGSNPPW*