AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0680030322.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0680030322.01.T01 MTR_6g004520 98.300 353 5 1 11 363 1 352 0.0 714
MsG0680030322.01.T01 MTR_6g004520 97.923 337 6 1 27 363 28 363 0.0 682
MsG0680030322.01.T01 MTR_6g004520 98.689 305 4 0 59 363 1 305 0.0 625
MsG0680030322.01.T01 MTR_2g036810 60.870 299 112 4 68 361 19 317 8.42e-129 372
MsG0680030322.01.T01 MTR_4g005740 59.060 298 117 4 68 360 15 312 1.25e-123 358
MsG0680030322.01.T01 MTR_7g116910 55.290 293 127 3 65 353 18 310 9.08e-117 341
MsG0680030322.01.T01 MTR_4g092780 54.949 293 128 3 65 353 18 310 1.64e-114 335
MsG0680030322.01.T01 MTR_5g009670 53.448 290 132 3 61 347 15 304 1.63e-112 330
MsG0680030322.01.T01 MTR_5g009670 52.564 234 108 3 61 291 15 248 8.34e-86 260
MsG0680030322.01.T01 MTR_5g020640 31.359 287 179 7 59 342 39 310 7.10e-35 130
MsG0680030322.01.T01 MTR_5g020640 35.326 184 103 5 59 235 39 213 5.86e-24 99.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0680030322.01.T01 AT5G14500 69.737 304 91 1 59 361 1 304 9.39e-159 447
MsG0680030322.01.T01 AT3G01590 68.750 304 94 1 59 361 1 304 4.90e-156 441
MsG0680030322.01.T01 AT3G01590 68.750 304 94 1 59 361 1 304 4.90e-156 441
MsG0680030322.01.T01 AT5G14500 64.438 329 91 2 59 361 1 329 2.69e-152 432
MsG0680030322.01.T01 AT5G57330 60.403 298 111 5 68 359 15 311 5.53e-124 360
MsG0680030322.01.T01 AT3G61610 53.041 296 135 3 63 354 16 311 1.86e-111 328
MsG0680030322.01.T01 AT3G61610 53.041 296 135 3 63 354 10 305 2.09e-111 327
MsG0680030322.01.T01 AT4G23730 52.740 292 133 3 61 347 15 306 4.62e-107 316
MsG0680030322.01.T01 AT4G23730 52.013 298 132 4 61 347 15 312 3.42e-105 312
MsG0680030322.01.T01 AT4G23730 54.647 269 117 3 84 347 3 271 3.07e-101 300
MsG0680030322.01.T01 AT4G25900 48.227 282 140 4 68 347 38 315 3.58e-91 276
MsG0680030322.01.T01 AT5G66530 31.488 289 172 9 61 342 8 277 1.21e-34 129
MsG0680030322.01.T01 AT5G66530 31.228 285 178 8 61 342 36 305 2.85e-34 128
MsG0680030322.01.T01 AT5G66530 31.228 285 178 8 61 342 36 305 2.85e-34 128
MsG0680030322.01.T01 AT5G66530 31.228 285 178 8 61 342 36 305 2.85e-34 128

Find 86 sgRNAs with CRISPR-Local

Find 152 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAACAATTTCATGTTCTTTA+AGG 0.090345 6:+599155 None:intergenic
ATGTTCTTTATCGTAATTTA+TGG 0.093751 6:+599191 None:intergenic
GATCCTCGTCGAGTTCTTTA+TGG 0.207407 6:-599573 MsG0680030322.01.T01:CDS
TTCAAAGGCATCTGTATAAT+TGG 0.207577 6:+601811 None:intergenic
GGCTAAAGCTCTACCTGATT+TGG 0.261406 6:-599733 MsG0680030322.01.T01:CDS
AAACATAAAGTGAGGATAAA+AGG 0.265244 6:+599129 None:intergenic
TTTCTACTGAACAGGCTAAA+TGG 0.267382 6:-600886 MsG0680030322.01.T01:intron
TGGTTTCAGGTGCTTCTATA+TGG 0.300749 6:-601131 MsG0680030322.01.T01:intron
TCACATGGCTTCAAGATAAT+AGG 0.304789 6:+599657 None:intergenic
AGTGAAAATGCAAAAGAAAA+TGG 0.307262 6:+600299 None:intergenic
CATCTGGAAGTGAATTCTTC+TGG 0.316198 6:+599880 None:intergenic
ATGGAATCCATGGAATAAAA+AGG 0.317111 6:-599754 MsG0680030322.01.T01:CDS
GCTGATGCAATTACATTTGA+TGG 0.318284 6:-600054 MsG0680030322.01.T01:CDS
ATGGAGGGCATATTGTTTCT+TGG 0.327788 6:-601112 MsG0680030322.01.T01:CDS
ATATGTATACACAGCATTAC+TGG 0.330966 6:+599221 None:intergenic
AGACTATAGTTCCTCTTCAT+AGG 0.337857 6:-599440 MsG0680030322.01.T01:three_prime_UTR
ATGAAATTGAGAACATTGTT+TGG 0.367606 6:-601934 MsG0680030322.01.T01:CDS
CTTTCACTCTTCTCCAATCC+AGG 0.376719 6:+601890 None:intergenic
ACAGATGAATGATTGTCTAT+TGG 0.398461 6:+600615 None:intergenic
ATATTATGTTGATGTTGTTA+TGG 0.408797 6:-601969 MsG0680030322.01.T01:CDS
TAATTATTGTAAGGTGGAAA+AGG 0.409830 6:+599341 None:intergenic
AACATCTCTTAATTATTGTA+AGG 0.410691 6:+599332 None:intergenic
GCTAAAGCTCTACCTGATTT+GGG 0.410922 6:-599732 MsG0680030322.01.T01:CDS
TTTCTTCTCATGATCTATGA+TGG 0.415275 6:+599917 None:intergenic
AAGCTATTGCAGTGGACAAT+TGG 0.418644 6:-599595 MsG0680030322.01.T01:CDS
TAATCATCAACTCCCAAATC+AGG 0.419942 6:+599720 None:intergenic
CACATGGAATGACAAGAAAC+AGG 0.427401 6:-600674 MsG0680030322.01.T01:CDS
TGAGTAATTCAAGAGCATTA+AGG 0.428845 6:-601855 MsG0680030322.01.T01:CDS
AATTATTGTAAGGTGGAAAA+GGG 0.431474 6:+599342 None:intergenic
GCTCTTGAATTACTCACAAA+TGG 0.432943 6:+601862 None:intergenic
AATGTATTTCAAGACAAAGA+TGG 0.433363 6:-601790 MsG0680030322.01.T01:CDS
AACTAATAGTAACCTGCATC+TGG 0.440068 6:+599864 None:intergenic
GGATCAGTCAATACAATCCT+TGG 0.445366 6:+601763 None:intergenic
AAGAAACAGGATGTGGTCAT+TGG 0.451987 6:-600661 MsG0680030322.01.T01:CDS
TTTCAGTGAACTGTAATTGA+TGG 0.453083 6:-599549 MsG0680030322.01.T01:exon
GATTTGATATTAAAGTCAAC+AGG 0.453233 6:-600591 MsG0680030322.01.T01:CDS
ACCTCAGCTGATGAACCATT+TGG 0.455672 6:+601742 None:intergenic
TTGTCTTGAAATACATTCAA+AGG 0.463676 6:+601796 None:intergenic
GTGATAAGAGTGCAGTTGTA+TGG 0.466146 6:-599773 MsG0680030322.01.T01:intron
GACTATAGTTCCTCTTCATA+GGG 0.468410 6:-599439 MsG0680030322.01.T01:three_prime_UTR
TCTTGAAGCCATGTGAAGAA+TGG 0.469606 6:-599650 MsG0680030322.01.T01:CDS
GTTGATGTTGTTATGGTGGA+TGG 0.474269 6:-601962 MsG0680030322.01.T01:CDS
TTATCAGTGTTTCTGACTCT+AGG 0.478385 6:+600326 None:intergenic
ACATATGATGCATACCTTCG+TGG 0.480527 6:+600552 None:intergenic
ATTGGTTGCAGAACCTGGAT+TGG 0.488869 6:-601903 MsG0680030322.01.T01:CDS
CAGATCAAGATTCACAGAAC+AGG 0.492587 6:-600076 MsG0680030322.01.T01:CDS
GTGTTGCAGTTTGGTGATGT+TGG 0.494871 6:-600708 MsG0680030322.01.T01:intron
AAGAATTCACTTCCAGATGC+AGG 0.502151 6:-599876 MsG0680030322.01.T01:intron
TTCAGGTGCTTCTATATGGA+GGG 0.504410 6:-601127 MsG0680030322.01.T01:intron
CAATGAAAATCTTCAGAGAA+TGG 0.509429 6:-599247 MsG0680030322.01.T01:three_prime_UTR
ATGTTATCGTATCCACCTAT+CGG 0.511839 6:+599369 None:intergenic
GATGAATGATTGTCTATTGG+AGG 0.517054 6:+600618 None:intergenic
TGCAATTACATTTGATGGAG+AGG 0.525933 6:-600049 MsG0680030322.01.T01:intron
GTGCAGTTGTATGGAATCCA+TGG 0.531959 6:-599764 MsG0680030322.01.T01:intron
ATCTCTTAATTATTGTAAGG+TGG 0.534200 6:+599335 None:intergenic
ATTGTATTGACTGATCCAAA+TGG 0.534205 6:-601757 MsG0680030322.01.T01:CDS
ATCAATGTCATTCCGATAGG+TGG 0.535117 6:-599381 MsG0680030322.01.T01:three_prime_UTR
TTGTTTCTTGGAAGAATCAA+AGG 0.540471 6:-601100 MsG0680030322.01.T01:CDS
TCTATTGGAGGTAGTGGTGA+AGG 0.541685 6:+600630 None:intergenic
TTATGTTGATGTTGTTATGG+TGG 0.541988 6:-601966 MsG0680030322.01.T01:CDS
TGATTGTCTATTGGAGGTAG+TGG 0.547520 6:+600624 None:intergenic
GTATATCAGCTTGCTTCGCA+CGG 0.554586 6:-600838 MsG0680030322.01.T01:CDS
TGCAGTGAAGTGCGTATCGA+GGG 0.559173 6:-600135 MsG0680030322.01.T01:intron
CTATTGGAGGTAGTGGTGAA+GGG 0.565619 6:+600631 None:intergenic
CACACCTCATTGCTGTCTCA+AGG 0.577373 6:+599408 None:intergenic
CTTAGGATATCTCTAAGTGC+TGG 0.578744 6:-600365 MsG0680030322.01.T01:CDS
TAACCTTTCCATTCTTCACA+TGG 0.581051 6:+599642 None:intergenic
GCTAAGCAATTGTCATAGCA+TGG 0.581178 6:+599296 None:intergenic
TATATCAGCTTGCTTCGCAC+GGG 0.583439 6:-600837 MsG0680030322.01.T01:intron
TTTCAGGTGCTTCTATATGG+AGG 0.583536 6:-601128 MsG0680030322.01.T01:intron
AAGACAAAGATGGATTGCCA+AGG 0.592129 6:-601780 MsG0680030322.01.T01:CDS
GGCAATGTAACCCTATGAAG+AGG 0.598954 6:+599429 None:intergenic
TTGATCAATGTCATTCCGAT+AGG 0.612608 6:-599384 MsG0680030322.01.T01:three_prime_UTR
GAATGACAAGAAACAGGATG+TGG 0.614717 6:-600668 MsG0680030322.01.T01:CDS
TTCTTGGAAGAATCAAAGGA+AGG 0.617206 6:-601096 MsG0680030322.01.T01:CDS
GTGCAGTGAAGTGCGTATCG+AGG 0.625522 6:-600136 MsG0680030322.01.T01:intron
AAGCCATGTGAAGAATGGAA+AGG 0.627246 6:-599645 MsG0680030322.01.T01:CDS
TCCAAATGGTTCATCAGCTG+AGG 0.630236 6:-601743 MsG0680030322.01.T01:intron
AATAGACAATCATTCATCTG+TGG 0.635597 6:-600613 MsG0680030322.01.T01:CDS
GTTTCGTCAAGCTATTGCAG+TGG 0.637223 6:-599603 MsG0680030322.01.T01:CDS
AAACAACATAAAGCAATCAG+AGG 0.644716 6:-600863 MsG0680030322.01.T01:CDS
CAACATAAAGCAATCAGAGG+AGG 0.656588 6:-600860 MsG0680030322.01.T01:CDS
GTTGGTTCACTTGAGACACA+TGG 0.677188 6:-600690 MsG0680030322.01.T01:CDS
ATTGCCTTGAGACAGCAATG+AGG 0.718659 6:-599412 MsG0680030322.01.T01:three_prime_UTR
TTGACTTAAAGACGCCACGA+AGG 0.719729 6:-600566 MsG0680030322.01.T01:intron
AAACCATAAAGAACTCGACG+AGG 0.748460 6:+599570 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! CTATAGTCTATATATATATA+TGG + Chr6:601664-601683 None:intergenic 15.0%
!! TATAAATAACCAAAATACTA+AGG + Chr6:600928-600947 None:intergenic 15.0%
!!! TTTGACTTAAATTTATCTTT+TGG + Chr6:599562-599581 None:intergenic 15.0%
!! AAAAAAATTCTCAACAAGTA+AGG + Chr6:600357-600376 None:intergenic 20.0%
!! AAAGATTATTATTCAAGGTA+TGG + Chr6:599784-599803 None:intergenic 20.0%
!! AACATCTCTTAATTATTGTA+AGG + Chr6:601786-601805 None:intergenic 20.0%
!! ACAAAAAATACTATCATGTT+AGG + Chr6:599440-599459 None:intergenic 20.0%
!! ACAAGTTAGTCAAAATTATA+AGG + Chr6:599862-599881 None:intergenic 20.0%
!! AGTCAAAAGATTATTATTCA+AGG + Chr6:599789-599808 None:intergenic 20.0%
!! ATATTATGTTGATGTTGTTA+TGG - Chr6:599146-599165 MsG0680030322.01.T01:three_prime_UTR 20.0%
!! ATGTTCTTTATCGTAATTTA+TGG + Chr6:601927-601946 None:intergenic 20.0%
!! TTCCATCATCAAATATTATT+TGG - Chr6:599885-599904 MsG0680030322.01.T01:CDS 20.0%
!!! AATAAAGCTTTTGAAACATA+TGG - Chr6:599964-599983 MsG0680030322.01.T01:intron 20.0%
!!! TTGTCTAAGTTTTAAAATGA+TGG - Chr6:599918-599937 MsG0680030322.01.T01:CDS 20.0%
! AAAAAATTACCCTAGTAATG+CGG - Chr6:600180-600199 MsG0680030322.01.T01:intron 25.0%
! AATGTATTTCAAGACAAAGA+TGG - Chr6:599325-599344 MsG0680030322.01.T01:three_prime_UTR 25.0%
! AATTATTGTAAGGTGGAAAA+GGG + Chr6:601776-601795 None:intergenic 25.0%
! ACATCATGAAAGTAATTGAA+TGG + Chr6:600664-600683 None:intergenic 25.0%
! AGTGAAAATGCAAAAGAAAA+TGG + Chr6:600819-600838 None:intergenic 25.0%
! AGTGATCTTAATGGAAAAAT+TGG - Chr6:599410-599429 MsG0680030322.01.T01:three_prime_UTR 25.0%
! ATCTCTTAATTATTGTAAGG+TGG + Chr6:601783-601802 None:intergenic 25.0%
! ATGAAATTGAGAACATTGTT+TGG - Chr6:599181-599200 MsG0680030322.01.T01:three_prime_UTR 25.0%
! CAACATCAACATAATATTCA+TGG + Chr6:599143-599162 None:intergenic 25.0%
! GAACAATTTCATGTTCTTTA+AGG + Chr6:601937-601956 None:intergenic 25.0%
! GATTTGATATTAAAGTCAAC+AGG - Chr6:600524-600543 MsG0680030322.01.T01:intron 25.0%
! GTATATATGAAAGAATGTCA+TGG + Chr6:601105-601124 None:intergenic 25.0%
! GTCCAAATAATATTTGATGA+TGG + Chr6:599890-599909 None:intergenic 25.0%
! GTTAGTCAAAATTATAAGGA+AGG + Chr6:599858-599877 None:intergenic 25.0%
! TAATTATTGTAAGGTGGAAA+AGG + Chr6:601777-601796 None:intergenic 25.0%
! TAGTTGAATATCAACAAGTT+TGG + Chr6:600380-600399 None:intergenic 25.0%
! TCATCAAATATTATTTGGAC+CGG - Chr6:599890-599909 MsG0680030322.01.T01:CDS 25.0%
! TTCATCATATACACAACATA+TGG - Chr6:600309-600328 MsG0680030322.01.T01:CDS 25.0%
! TTGTCTTGAAATACATTCAA+AGG + Chr6:599322-599341 None:intergenic 25.0%
!! AAATTTGTCAGTGGTTTTTA+TGG - Chr6:600134-600153 MsG0680030322.01.T01:intron 25.0%
!! TCTATGATGGCAATTTTATT+TGG + Chr6:601188-601207 None:intergenic 25.0%
!! TTTTATCTGTATCAGATATC+AGG - Chr6:600847-600866 MsG0680030322.01.T01:CDS 25.0%
!!! AAATTTGTGTTACTTTGGAT+TGG - Chr6:599757-599776 MsG0680030322.01.T01:CDS 25.0%
!!! CATTGTTTGGTTTTTTTGAT+TGG - Chr6:599194-599213 MsG0680030322.01.T01:three_prime_UTR 25.0%
!!! CTATGATGGCAATTTTATTT+GGG + Chr6:601187-601206 None:intergenic 25.0%
!!! GTAATTTTTTTCCCTAGAAT+CGG + Chr6:600170-600189 None:intergenic 25.0%
!!! TTCAGAAATTTGTGTTACTT+TGG - Chr6:599752-599771 MsG0680030322.01.T01:CDS 25.0%
AAAAACCACTGACAAATTTG+TGG + Chr6:600133-600152 None:intergenic 30.0%
AAACAACATAAAGCAATCAG+AGG - Chr6:600252-600271 MsG0680030322.01.T01:intron 30.0%
AAATATTATTTGGACCGGTA+TGG - Chr6:599895-599914 MsG0680030322.01.T01:CDS 30.0%
AATAGACAATCATTCATCTG+TGG - Chr6:600502-600521 MsG0680030322.01.T01:intron 30.0%
ACAGATGAATGATTGTCTAT+TGG + Chr6:600503-600522 None:intergenic 30.0%
ATATGTATACACAGCATTAC+TGG + Chr6:601897-601916 None:intergenic 30.0%
ATGCAGGTTACTATTAGTTA+GGG - Chr6:601255-601274 MsG0680030322.01.T01:intron 30.0%
ATGGAATCCATGGAATAAAA+AGG - Chr6:601361-601380 MsG0680030322.01.T01:intron 30.0%
CAATGAAAATCTTCAGAGAA+TGG - Chr6:601868-601887 MsG0680030322.01.T01:CDS 30.0%
GGAAAAAAAGTGAAAATCAG+TGG + Chr6:600886-600905 None:intergenic 30.0%
TAAAACTTAGACAACCATAC+CGG + Chr6:599912-599931 None:intergenic 30.0%
TTATGTTGATGTTGTTATGG+TGG - Chr6:599149-599168 MsG0680030322.01.T01:three_prime_UTR 30.0%
TTGTGTAGCTCAACATAAAT+AGG - Chr6:599690-599709 MsG0680030322.01.T01:CDS 30.0%
TTTCAGTGAACTGTAATTGA+TGG - Chr6:601566-601585 MsG0680030322.01.T01:intron 30.0%
TTTCTTCTCATGATCTATGA+TGG + Chr6:601201-601220 None:intergenic 30.0%
! ATCATCATGCCTTAGTATTT+TGG - Chr6:600916-600935 MsG0680030322.01.T01:intron 30.0%
! TAGCTCTCTAAACATTGTTT+TGG - Chr6:601126-601145 MsG0680030322.01.T01:intron 30.0%
! TAGGTATTTTTCTACTGAAC+AGG - Chr6:600221-600240 MsG0680030322.01.T01:intron 30.0%
! TCTTTTGCTAGTGATCTTAA+TGG - Chr6:599401-599420 MsG0680030322.01.T01:three_prime_UTR 30.0%
! TTAAGAGATGTTTTGCTTCA+TGG - Chr6:601794-601813 MsG0680030322.01.T01:CDS 30.0%
! TTGTTTCTTGGAAGAATCAA+AGG - Chr6:600015-600034 MsG0680030322.01.T01:intron 30.0%
!! ATTGTATTGACTGATCCAAA+TGG - Chr6:599358-599377 MsG0680030322.01.T01:three_prime_UTR 30.0%
!! CATTCTCTGAAGATTTTCAT+TGG + Chr6:601870-601889 None:intergenic 30.0%
!! TGAGTAATTCAAGAGCATTA+AGG - Chr6:599260-599279 MsG0680030322.01.T01:three_prime_UTR 30.0%
!! TTCAAAGGCATCTGTATAAT+TGG + Chr6:599307-599326 None:intergenic 30.0%
!!! CTTTTGAAACATATGGTTTC+AGG - Chr6:599971-599990 MsG0680030322.01.T01:intron 30.0%
AACTAATAGTAACCTGCATC+TGG + Chr6:601254-601273 None:intergenic 35.0%
AGACTATAGTTCCTCTTCAT+AGG - Chr6:601675-601694 MsG0680030322.01.T01:intron 35.0%
ATGTTATCGTATCCACCTAT+CGG + Chr6:601749-601768 None:intergenic 35.0%
ATTACATTTGATGGAGAGGT+AGG - Chr6:601070-601089 MsG0680030322.01.T01:CDS 35.0%
CATTCTATGCTTACTTGCTT+TGG - Chr6:599821-599840 MsG0680030322.01.T01:intron 35.0%
CTCAACAAGTAAGGAGAAAA+CGG + Chr6:600348-600367 None:intergenic 35.0%
CTTTATGTTGAAGATGTCTC+TGG - Chr6:600596-600615 MsG0680030322.01.T01:CDS 35.0%
GACTATAGTTCCTCTTCATA+GGG - Chr6:601676-601695 MsG0680030322.01.T01:intron 35.0%
GACTATCGAGTTTGATCAAT+AGG - Chr6:600202-600221 MsG0680030322.01.T01:intron 35.0%
GATGAATGATTGTCTATTGG+AGG + Chr6:600500-600519 None:intergenic 35.0%
GATGCAGGTTACTATTAGTT+AGG - Chr6:601254-601273 MsG0680030322.01.T01:intron 35.0%
GCTCTTGAATTACTCACAAA+TGG + Chr6:599256-599275 None:intergenic 35.0%
GCTGATGCAATTACATTTGA+TGG - Chr6:601061-601080 MsG0680030322.01.T01:intron 35.0%
TAACCTTTCCATTCTTCACA+TGG + Chr6:601476-601495 None:intergenic 35.0%
TAATCATCAACTCCCAAATC+AGG + Chr6:601398-601417 None:intergenic 35.0%
TACAATTCTGTGTTGCAGTT+TGG - Chr6:600398-600417 MsG0680030322.01.T01:intron 35.0%
TCACATGGCTTCAAGATAAT+AGG + Chr6:601461-601480 None:intergenic 35.0%
TGCAATTACATTTGATGGAG+AGG - Chr6:601066-601085 MsG0680030322.01.T01:intron 35.0%
TTCTTGGAAGAATCAAAGGA+AGG - Chr6:600019-600038 MsG0680030322.01.T01:intron 35.0%
TTGATCAATGTCATTCCGAT+AGG - Chr6:601731-601750 MsG0680030322.01.T01:intron 35.0%
TTTCTACTGAACAGGCTAAA+TGG - Chr6:600229-600248 MsG0680030322.01.T01:intron 35.0%
! TTATCAGTGTTTCTGACTCT+AGG + Chr6:600792-600811 None:intergenic 35.0%
!! GCTTTAGCCTTTTTATTCCA+TGG + Chr6:601371-601390 None:intergenic 35.0%
!! GTTTTAAACCTCCGATTCTA+GGG - Chr6:600156-600175 MsG0680030322.01.T01:intron 35.0%
!!! ACTGCTTTTTATGAGCAGTA+AGG - Chr6:600046-600065 MsG0680030322.01.T01:intron 35.0%
!!! ATTTTTTTCCCTAGAATCGG+AGG + Chr6:600167-600186 None:intergenic 35.0%
!!! GTATATGCAGTTTTGAGTTG+AGG - Chr6:600727-600746 MsG0680030322.01.T01:intron 35.0%
!!! GTTTTGGTTTACCTTGTAGA+CGG - Chr6:601142-601161 MsG0680030322.01.T01:intron 35.0%
AAACCATAAAGAACTCGACG+AGG + Chr6:601548-601567 None:intergenic 40.0%
AAGAAACAGGATGTGGTCAT+TGG - Chr6:600454-600473 MsG0680030322.01.T01:intron 40.0%
AAGAATTCACTTCCAGATGC+AGG - Chr6:601239-601258 MsG0680030322.01.T01:intron 40.0%
AAGCCATGTGAAGAATGGAA+AGG - Chr6:601470-601489 MsG0680030322.01.T01:intron 40.0%
AAGCTATTGCAGTGGACAAT+TGG - Chr6:601520-601539 MsG0680030322.01.T01:intron 40.0%
ACATATGATGCATACCTTCG+TGG + Chr6:600566-600585 None:intergenic 40.0%
ACTTTCATGATGTGTGTCGT+CGG - Chr6:600671-600690 MsG0680030322.01.T01:CDS 40.0%
ATCAATGTCATTCCGATAGG+TGG - Chr6:601734-601753 MsG0680030322.01.T01:intron 40.0%
CAACATAAAGCAATCAGAGG+AGG - Chr6:600255-600274 MsG0680030322.01.T01:intron 40.0%
CACATGGAATGACAAGAAAC+AGG - Chr6:600441-600460 MsG0680030322.01.T01:intron 40.0%
CAGATCAAGATTCACAGAAC+AGG - Chr6:601039-601058 MsG0680030322.01.T01:intron 40.0%
CATCTGGAAGTGAATTCTTC+TGG + Chr6:601238-601257 None:intergenic 40.0%
CTTAGGATATCTCTAAGTGC+TGG - Chr6:600750-600769 MsG0680030322.01.T01:intron 40.0%
GAATGACAAGAAACAGGATG+TGG - Chr6:600447-600466 MsG0680030322.01.T01:intron 40.0%
GACTTCCACAAATTTGTCAG+TGG - Chr6:600125-600144 MsG0680030322.01.T01:CDS 40.0%
GCTAAAGCTCTACCTGATTT+GGG - Chr6:601383-601402 MsG0680030322.01.T01:intron 40.0%
GCTAAGCAATTGTCATAGCA+TGG + Chr6:601822-601841 None:intergenic 40.0%
GGATCAGTCAATACAATCCT+TGG + Chr6:599355-599374 None:intergenic 40.0%
GGCATGATGATCATGTAGAA+AGG + Chr6:600907-600926 None:intergenic 40.0%
GTTGTGTCAGTTATACGTGT+CGG + Chr6:600625-600644 None:intergenic 40.0%
TCTTGAAGCCATGTGAAGAA+TGG - Chr6:601465-601484 MsG0680030322.01.T01:intron 40.0%
TGATTGTCTATTGGAGGTAG+TGG + Chr6:600494-600513 None:intergenic 40.0%
TTCAGGTGCTTCTATATGGA+GGG - Chr6:599988-600007 MsG0680030322.01.T01:intron 40.0%
! ATGGAGGGCATATTGTTTCT+TGG - Chr6:600003-600022 MsG0680030322.01.T01:intron 40.0%
! GTGATAAGAGTGCAGTTGTA+TGG - Chr6:601342-601361 MsG0680030322.01.T01:intron 40.0%
! GTTGATGTTGTTATGGTGGA+TGG - Chr6:599153-599172 MsG0680030322.01.T01:three_prime_UTR 40.0%
! TAACACATCAAGAGCGTGTT+TGG + Chr6:599662-599681 None:intergenic 40.0%
! TGGTTTCAGGTGCTTCTATA+TGG - Chr6:599984-600003 MsG0680030322.01.T01:intron 40.0%
! TTTCAGGTGCTTCTATATGG+AGG - Chr6:599987-600006 MsG0680030322.01.T01:intron 40.0%
!! AAGACAAAGATGGATTGCCA+AGG - Chr6:599335-599354 MsG0680030322.01.T01:three_prime_UTR 40.0%
!! TTTTGATTGGTTGCAGAACC+TGG - Chr6:599207-599226 MsG0680030322.01.T01:three_prime_UTR 40.0%
!!! GGTTTTAAACCTCCGATTCT+AGG - Chr6:600155-600174 MsG0680030322.01.T01:intron 40.0%
AATGGTTCATCAGCTGAGGT+TGG - Chr6:599376-599395 MsG0680030322.01.T01:three_prime_UTR 45.0%
ACCTCAGCTGATGAACCATT+TGG + Chr6:599376-599395 None:intergenic 45.0%
ACTCGATAGTCCGCATTACT+AGG + Chr6:600193-600212 None:intergenic 45.0%
ATTGCCTTGAGACAGCAATG+AGG - Chr6:601703-601722 MsG0680030322.01.T01:intron 45.0%
ATTGGTTGCAGAACCTGGAT+TGG - Chr6:599212-599231 MsG0680030322.01.T01:three_prime_UTR 45.0%
CTCGATAGTCCGCATTACTA+GGG + Chr6:600192-600211 None:intergenic 45.0%
CTTTCACTCTTCTCCAATCC+AGG + Chr6:599228-599247 None:intergenic 45.0%
GATCCTCGTCGAGTTCTTTA+TGG - Chr6:601542-601561 MsG0680030322.01.T01:intron 45.0%
GGCAATGTAACCCTATGAAG+AGG + Chr6:601689-601708 None:intergenic 45.0%
GGCTAAAGCTCTACCTGATT+TGG - Chr6:601382-601401 MsG0680030322.01.T01:intron 45.0%
GTATACTCTGTCCGTCTACA+AGG + Chr6:601156-601175 None:intergenic 45.0%
GTGCAGTTGTATGGAATCCA+TGG - Chr6:601351-601370 MsG0680030322.01.T01:intron 45.0%
GTTTCGTCAAGCTATTGCAG+TGG - Chr6:601512-601531 MsG0680030322.01.T01:intron 45.0%
TCCAAATGGTTCATCAGCTG+AGG - Chr6:599372-599391 MsG0680030322.01.T01:three_prime_UTR 45.0%
TTGACTTAAAGACGCCACGA+AGG - Chr6:600549-600568 MsG0680030322.01.T01:intron 45.0%
! CTATTGGAGGTAGTGGTGAA+GGG + Chr6:600487-600506 None:intergenic 45.0%
! GTATATCAGCTTGCTTCGCA+CGG - Chr6:600277-600296 MsG0680030322.01.T01:CDS 45.0%
! GTTGGTTCACTTGAGACACA+TGG - Chr6:600425-600444 MsG0680030322.01.T01:intron 45.0%
! TATATCAGCTTGCTTCGCAC+GGG - Chr6:600278-600297 MsG0680030322.01.T01:CDS 45.0%
! TCTATTGGAGGTAGTGGTGA+AGG + Chr6:600488-600507 None:intergenic 45.0%
!! GTGTTGCAGTTTGGTGATGT+TGG - Chr6:600407-600426 MsG0680030322.01.T01:intron 45.0%
!!! GCAGTTTTGAGTTGAGGCTT+AGG - Chr6:600733-600752 MsG0680030322.01.T01:intron 45.0%
CACACCTCATTGCTGTCTCA+AGG + Chr6:601710-601729 None:intergenic 50.0%
TGCAGTGAAGTGCGTATCGA+GGG - Chr6:600980-600999 MsG0680030322.01.T01:intron 50.0%
GTGCAGTGAAGTGCGTATCG+AGG - Chr6:600979-600998 MsG0680030322.01.T01:intron 55.0%
Chromosome Type Strat End Strand Name
Chr6 gene 599142 601995 599142 ID=MsG0680030322.01;Name=MsG0680030322.01
Chr6 mRNA 599142 601995 599142 ID=MsG0680030322.01.T01;Parent=MsG0680030322.01;Name=MsG0680030322.01.T01;_AED=0.28;_eAED=0.29;_QI=0|1|0.87|1|1|1|8|421|363
Chr6 exon 599142 599780 599142 ID=MsG0680030322.01.T01:exon:2190;Parent=MsG0680030322.01.T01
Chr6 exon 599877 599976 599877 ID=MsG0680030322.01.T01:exon:2189;Parent=MsG0680030322.01.T01
Chr6 exon 600050 600152 600050 ID=MsG0680030322.01.T01:exon:2188;Parent=MsG0680030322.01.T01
Chr6 exon 600269 600400 600269 ID=MsG0680030322.01.T01:exon:2187;Parent=MsG0680030322.01.T01
Chr6 exon 600567 600721 600567 ID=MsG0680030322.01.T01:exon:2186;Parent=MsG0680030322.01.T01
Chr6 exon 600838 600894 600838 ID=MsG0680030322.01.T01:exon:2185;Parent=MsG0680030322.01.T01
Chr6 exon 601070 601144 601070 ID=MsG0680030322.01.T01:exon:2184;Parent=MsG0680030322.01.T01
Chr6 exon 601744 601995 601744 ID=MsG0680030322.01.T01:exon:2183;Parent=MsG0680030322.01.T01
Chr6 CDS 601744 601995 601744 ID=MsG0680030322.01.T01:cds;Parent=MsG0680030322.01.T01
Chr6 CDS 601070 601144 601070 ID=MsG0680030322.01.T01:cds;Parent=MsG0680030322.01.T01
Chr6 CDS 600838 600894 600838 ID=MsG0680030322.01.T01:cds;Parent=MsG0680030322.01.T01
Chr6 CDS 600567 600721 600567 ID=MsG0680030322.01.T01:cds;Parent=MsG0680030322.01.T01
Chr6 CDS 600269 600400 600269 ID=MsG0680030322.01.T01:cds;Parent=MsG0680030322.01.T01
Chr6 CDS 600050 600152 600050 ID=MsG0680030322.01.T01:cds;Parent=MsG0680030322.01.T01
Chr6 CDS 599877 599976 599877 ID=MsG0680030322.01.T01:cds;Parent=MsG0680030322.01.T01
Chr6 CDS 599563 599780 599563 ID=MsG0680030322.01.T01:cds;Parent=MsG0680030322.01.T01
Chr6 three_prime_UTR 599142 599562 599142 ID=MsG0680030322.01.T01:three_prime_utr;Parent=MsG0680030322.01.T01
Gene Sequence

>MsG0680030322.01.T01

ATGAATATTATGTTGATGTTGTTATGGTGGATGGTGAAGATGAAATTGAGAACATTGTTTGGTTTTTTTGATTGGTTGCAGAACCTGGATTGGAGAAGAGTGAAAGTGAAGCCATTTGTGAGTAATTCAAGAGCATTAAGGTTGCAGCAACAGCAGCATCAACCAATTATACAGATGCCTTTGAATGTATTTCAAGACAAAGATGGATTGCCAAGGATTGTATTGACTGATCCAAATGGTTCATCAGCTGAGGTGCTTCTATATGGAGGGCATATTGTTTCTTGGAAGAATCAAAGGAAGGAAGAACTGCTTTTTATGAGCAGTAAGGCTAAATGGAAACAACATAAAGCAATCAGAGGAGGTATATCAGCTTGCTTCGCACGGTTTGGTGATGTTGGTTCACTTGAGACACATGGAATGACAAGAAACAGGATGTGGTCATTGGATAGAGACCCTTCACCACTACCTCCAATAGACAATCATTCATCTGTGGATTTGATATTAAAGTCAACAGGAGTTGACTTAAAGACGCCACGAAGTTTTGAGTTGAGGCTTAGGATATCTCTAAGTGCTGGCAAGCTCATTCTGATTCCTAGAGTCAGAAACACTGATAACAAACCATTTTCTTTTGCATTTTCACTATGCAACTTTTTATCTGTATCAGATATCAGTGAAGTGCGTATCGAGGGATTAGAGACACTTGATTATGTTGATAATCTGATGAACAGATCAAGATTCACAGAACAGGCTGATGCAATTACATTTGATGGAGAGACGGACAGAGTATACTTGCACAGCCCAAATAAAATTGCCATCATAGATCATGAGAAGAAAAGAACTTTTGTACTCCAGAAGAATTCACTTCCAGATGCAGTTGTATGGAATCCATGGAATAAAAAGGCTAAAGCTCTACCTGATTTGGGAGTTGATGATTACAAAATGATGTTATGTGTGAATTCAGCAGCTATTGATACTCCTATTATCTTGAAGCCATGTGAAGAATGGAAAGGTTATCAAGAAATCTCTACTGTTTCGTCAAGCTATTGCAGTGGACAATTGGATCCTCGTCGAGTTCTTTATGGTTTTCAGTGA
Protein sequence

>MsG0680030322.01.T01

MNIMLMLLWWMVKMKLRTLFGFFDWLQNLDWRRVKVKPFVSNSRALRLQQQQHQPIIQMPLNVFQDKDGLPRIVLTDPNGSSAEVLLYGGHIVSWKNQRKEELLFMSSKAKWKQHKAIRGGISACFARFGDVGSLETHGMTRNRMWSLDRDPSPLPPIDNHSSVDLILKSTGVDLKTPRSFELRLRISLSAGKLILIPRVRNTDNKPFSFAFSLCNFLSVSDISEVRIEGLETLDYVDNLMNRSRFTEQADAITFDGETDRVYLHSPNKIAIIDHEKKRTFVLQKNSLPDAVVWNPWNKKAKALPDLGVDDYKMMLCVNSAAIDTPIILKPCEEWKGYQEISTVSSSYCSGQLDPRRVLYGFQ*