AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0580024360.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0580024360.01.T01 MTR_5g009670 99.013 304 3 0 1 304 1 304 0.0 625
MsG0580024360.01.T01 MTR_5g009670 99.194 248 2 0 1 248 1 248 0.0 511
MsG0580024360.01.T01 MTR_4g092780 71.803 305 84 2 1 304 1 304 1.96e-165 462
MsG0580024360.01.T01 MTR_7g116910 69.836 305 90 2 1 304 1 304 3.28e-165 462
MsG0580024360.01.T01 MTR_2g036810 67.241 290 93 1 17 304 14 303 1.23e-152 430
MsG0580024360.01.T01 MTR_4g005740 66.667 285 93 1 22 304 15 299 5.25e-146 413
MsG0580024360.01.T01 MTR_6g004520 54.138 290 130 3 15 304 3 289 4.16e-115 334
MsG0580024360.01.T01 MTR_6g004520 54.138 290 130 3 15 304 61 347 9.39e-115 335
MsG0580024360.01.T01 MTR_6g004520 54.138 290 130 3 15 304 50 336 1.82e-114 334
MsG0580024360.01.T01 MTR_5g020640 33.218 289 174 7 15 301 41 312 5.98e-43 150
MsG0580024360.01.T01 MTR_5g020640 36.464 181 107 4 15 195 41 213 5.10e-30 114
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0580024360.01.T01 AT4G23730 69.608 306 91 2 1 304 1 306 1.17e-165 462
MsG0580024360.01.T01 AT3G61610 74.483 290 73 1 16 304 15 304 6.78e-165 461
MsG0580024360.01.T01 AT3G61610 74.483 290 73 1 16 304 9 298 7.51e-165 461
MsG0580024360.01.T01 AT4G23730 68.269 312 91 3 1 304 1 312 6.02e-163 456
MsG0580024360.01.T01 AT4G23730 73.881 268 68 2 39 304 4 271 1.66e-154 433
MsG0580024360.01.T01 AT5G57330 67.698 291 92 1 16 304 9 299 2.90e-154 434
MsG0580024360.01.T01 AT3G01590 60.000 285 112 2 20 304 8 290 6.35e-130 372
MsG0580024360.01.T01 AT3G01590 60.000 285 112 2 20 304 8 290 6.35e-130 372
MsG0580024360.01.T01 AT5G14500 57.586 290 121 2 15 304 3 290 8.62e-130 372
MsG0580024360.01.T01 AT5G14500 53.016 315 121 3 15 304 3 315 1.41e-123 357
MsG0580024360.01.T01 AT4G25900 51.042 288 136 2 16 303 32 314 4.77e-112 327
MsG0580024360.01.T01 AT5G66530 34.021 291 171 9 13 300 6 278 1.40e-44 153
MsG0580024360.01.T01 AT5G66530 34.021 291 171 9 13 300 34 306 3.05e-44 153
MsG0580024360.01.T01 AT5G66530 34.021 291 171 9 13 300 34 306 3.05e-44 153
MsG0580024360.01.T01 AT5G66530 34.021 291 171 9 13 300 34 306 3.05e-44 153

Find 85 sgRNAs with CRISPR-Local

Find 164 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCAAAGTCAATAGTGGATTT+TGG 0.129984 5:-3866551 MsG0580024360.01.T01:CDS
ATTCCTCCTCGTACTGGTTT+TGG 0.222742 5:+3867946 None:intergenic
GACAGTGAAGTGAGGGTAGA+AGG 0.250795 5:-3867034 MsG0580024360.01.T01:intron
GTTGTAGTTAACTTTATAAA+AGG 0.296743 5:-3866122 MsG0580024360.01.T01:three_prime_UTR
AAACAATAACCAATGCTTGA+TGG 0.340522 5:+3866361 None:intergenic
GATTTGCAAGGAATAAGATA+TGG 0.355587 5:-3867776 MsG0580024360.01.T01:CDS
TTACACATTGAATAGTTGTT+TGG 0.364398 5:-3866592 MsG0580024360.01.T01:intron
ACGGAGGGCAAGTTCTTTCA+TGG 0.380303 5:-3868256 MsG0580024360.01.T01:CDS
AAGGCTTGCCATTGACATTC+CGG 0.382320 5:+3867286 None:intergenic
TACGGACCTGATATCTGATA+TGG 0.394110 5:+3867230 None:intergenic
TGAAGCGTTCCTTCTGGTAT+AGG 0.403091 5:+3866984 None:intergenic
CTGAAGACGATATGAAGATA+TGG 0.407969 5:-3867677 MsG0580024360.01.T01:CDS
CGGCCGGTCCATTCTTCTCC+CGG 0.408566 5:+3866461 None:intergenic
GTTCTGTGAAGCGTTCCTTC+TGG 0.411774 5:+3866978 None:intergenic
TTATCTCGATTCTAGCAGTA+TGG 0.412644 5:-3866807 MsG0580024360.01.T01:CDS
TGAAGTGAGGGTAGAAGGGT+TGG 0.418375 5:-3867029 MsG0580024360.01.T01:CDS
ATTACCTGTGGAAAACAGAT+TGG 0.421320 5:+3867922 None:intergenic
GAAAGACACTTACCAACATC+TGG 0.431173 5:+3866728 None:intergenic
AAGGAGTATTTGTAGGAGTT+GGG 0.433989 5:+3866072 None:intergenic
ATTTCTCCATATCAGATATC+AGG 0.439981 5:-3867236 MsG0580024360.01.T01:intron
GTTTCGCCTAAGGGTCTGTT+TGG 0.445507 5:-3867343 MsG0580024360.01.T01:CDS
ACTTTGAGAGTAACAATTCA+AGG 0.452042 5:+3868510 None:intergenic
GAATAGTTGTTTGGAATCCC+TGG 0.459977 5:-3866583 MsG0580024360.01.T01:intron
CCATTTGAATCCGTGGGCAG+TGG 0.460101 5:+3867732 None:intergenic
AGAAGAATGGACCGGCCGCT+TGG 0.461091 5:-3866456 MsG0580024360.01.T01:CDS
GTTGTTCTTCGAAACGTTCG+AGG 0.461265 5:-3868398 MsG0580024360.01.T01:CDS
AAATCCGATAACCTTAAAAC+CGG 0.461715 5:-3866480 MsG0580024360.01.T01:CDS
AATGCAAAGCATACATAAAG+AGG 0.463360 5:+3866178 None:intergenic
CCTTAAAACCGGGAGAAGAA+TGG 0.474210 5:-3866469 MsG0580024360.01.T01:CDS
TTACCTGTGGAAAACAGATT+GGG 0.476013 5:+3867923 None:intergenic
ATTGGGATTCCTCCTCGTAC+TGG 0.478898 5:+3867940 None:intergenic
AACATCAGTTGAAGTTATCA+AGG 0.479030 5:-3868441 MsG0580024360.01.T01:CDS
GAATCCGTGGGCAGTGGTGG+AGG 0.481987 5:+3867738 None:intergenic
TTGAAGTCAAGTCAAGTAGA+AGG 0.484710 5:+3866419 None:intergenic
CAGCTTCGAGTTTCGCCTAA+GGG 0.487911 5:-3867352 MsG0580024360.01.T01:CDS
TCAGCTTCGAGTTTCGCCTA+AGG 0.489943 5:-3867353 MsG0580024360.01.T01:intron
ACAGTGAAGTGAGGGTAGAA+GGG 0.492013 5:-3867033 MsG0580024360.01.T01:intron
CCTTCTGGTATAGGTTATCC+AGG 0.493007 5:+3866993 None:intergenic
TGCTTTAACATTTGAATCTG+AGG 0.495159 5:-3866948 MsG0580024360.01.T01:intron
ACATATTAGTGATGTATATG+AGG 0.506124 5:-3866243 MsG0580024360.01.T01:three_prime_UTR
GTTATTGTTCACTAGTACCA+AGG 0.506527 5:-3868213 MsG0580024360.01.T01:intron
TGAATATGATATCTCGCATC+CGG 0.512657 5:-3867305 MsG0580024360.01.T01:CDS
ATTTGCAAGGAATAAGATAT+GGG 0.514716 5:-3867775 MsG0580024360.01.T01:CDS
TCTCGCATCCGGAATGTCAA+TGG 0.518066 5:-3867294 MsG0580024360.01.T01:CDS
TTCAGGTTAGCTTGCACGGA+GGG 0.519016 5:-3868271 MsG0580024360.01.T01:intron
TTTGAATCCGTGGGCAGTGG+TGG 0.520143 5:+3867735 None:intergenic
ACAATTTCATCTACATGACT+TGG 0.525178 5:+3866143 None:intergenic
AATAGTTGTTTGGAATCCCT+GGG 0.525696 5:-3866582 MsG0580024360.01.T01:intron
CCACTGCCCACGGATTCAAA+TGG 0.526642 5:-3867732 MsG0580024360.01.T01:CDS
CATGTTGCTCTAGTGTTCCA+CGG 0.532159 5:+3867799 None:intergenic
ATAAATAAACCATCAAGCAT+TGG 0.537410 5:-3866370 MsG0580024360.01.T01:three_prime_UTR
TTTCTTCTCATGATCTAGAA+CGG 0.537918 5:+3866781 None:intergenic
ATCTTCATATCGTCTTCAGA+TGG 0.538140 5:+3867681 None:intergenic
AGGGTCTGTTTGGCAGCAGA+TGG 0.540406 5:-3867333 MsG0580024360.01.T01:CDS
AACAGAAAGCTCCAAGCGGC+CGG 0.541122 5:+3866445 None:intergenic
TGCGTGGATGGTGCAGCAGT+TGG 0.542462 5:-3866503 MsG0580024360.01.T01:CDS
GTTGGAGACTCTTGACTACC+TGG 0.542710 5:-3867011 MsG0580024360.01.T01:CDS
AAGCAAATGCTCTGCGTGGA+TGG 0.557893 5:-3866515 MsG0580024360.01.T01:CDS
ATGTGTATATACTTGAAAAG+TGG 0.559564 5:+3866262 None:intergenic
TACTTAGAATTTAGAAACAG+AGG 0.571105 5:-3868562 None:intergenic
GAAATATGTATGAAATGCAA+AGG 0.575295 5:+3867254 None:intergenic
AAGGAAGGTCTTCCAGATGT+TGG 0.585878 5:-3866740 MsG0580024360.01.T01:intron
CTGCTGCCAAACAGACCCTT+AGG 0.589405 5:+3867337 None:intergenic
CGATTATTGACAGTGAAGTG+AGG 0.590022 5:-3867042 MsG0580024360.01.T01:intron
AAATCCTCCACCACTGCCCA+CGG 0.590093 5:-3867742 MsG0580024360.01.T01:CDS
AAGGAACGCTTCACAGAACA+AGG 0.595906 5:-3866974 MsG0580024360.01.T01:CDS
AAACCGGGAGAAGAATGGAC+CGG 0.609197 5:-3866464 MsG0580024360.01.T01:CDS
AATGCAAAGGAGAAACTGAA+AGG 0.627775 5:+3867267 None:intergenic
GATTATTGACAGTGAAGTGA+GGG 0.633522 5:-3867041 MsG0580024360.01.T01:intron
ACGAACATTTGTGATACGAA+AGG 0.635723 5:-3866759 MsG0580024360.01.T01:CDS
ATATGAAGATATGGCCACAT+AGG 0.635993 5:-3867668 MsG0580024360.01.T01:intron
CCTGGATAACCTATACCAGA+AGG 0.640312 5:-3866993 MsG0580024360.01.T01:CDS
CGTGGAACACTAGAGCAACA+TGG 0.643884 5:-3867798 MsG0580024360.01.T01:CDS
TAAAGCGCGTCGCACCTATG+TGG 0.646274 5:+3867654 None:intergenic
TAGAGCAACATGGATTTGCA+AGG 0.656362 5:-3867788 MsG0580024360.01.T01:CDS
TTTCAGGTTAGCTTGCACGG+AGG 0.662583 5:-3868272 MsG0580024360.01.T01:intron
ACATTTGTGATACGAAAGGA+AGG 0.663497 5:-3866755 MsG0580024360.01.T01:CDS
CGTTCGAGGAGCTTCAGCAA+CGG 0.664112 5:-3868384 MsG0580024360.01.T01:intron
CTTTCATGGAAAACAGAACG+CGG 0.670837 5:-3868242 MsG0580024360.01.T01:CDS
TGCGAGATATCATATTCAGA+CGG 0.674803 5:+3867310 None:intergenic
AATCCGATAACCTTAAAACC+GGG 0.679316 5:-3866479 MsG0580024360.01.T01:CDS
GTACAAGCAAATGCTCTGCG+TGG 0.681422 5:-3866519 MsG0580024360.01.T01:CDS
CCTCCAAAACCAGTACGAGG+AGG 0.735431 5:-3867949 MsG0580024360.01.T01:CDS
GTACAACAGAAAGCTCCAAG+CGG 0.740861 5:+3866441 None:intergenic
ACTCCTCCAAAACCAGTACG+AGG 0.754632 5:-3867952 MsG0580024360.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAATATACTTGTTATTATAT+AGG + Chr5:3867208-3867227 None:intergenic 10.0%
!!! AATTTAACTTGATAAATATA+AGG + Chr5:3867751-3867770 None:intergenic 10.0%
!! AAAATTTAAAAACGAACAAA+AGG + Chr5:3867527-3867546 None:intergenic 15.0%
!! ATATAGATAGATAGATAATA+AGG - Chr5:3866788-3866807 MsG0580024360.01.T01:CDS 15.0%
!!! ACATTTTACAAACAAAATTA+AGG + Chr5:3866622-3866641 None:intergenic 15.0%
!! AAAAAAAAGAAAGATTTGAC+AGG - Chr5:3868544-3868563 MsG0580024360.01.T01:five_prime_UTR 20.0%
!! CAAAATCTAAGTACTATAAT+TGG - Chr5:3867962-3867981 MsG0580024360.01.T01:CDS 20.0%
!! CAAACAAAATTAAGGTTAAT+TGG + Chr5:3866614-3866633 None:intergenic 20.0%
!! GCTATATATAGAACTATTAA+AGG - Chr5:3867094-3867113 MsG0580024360.01.T01:intron 20.0%
!! GTTGTAGTTAACTTTATAAA+AGG - Chr5:3868519-3868538 MsG0580024360.01.T01:five_prime_UTR 20.0%
!! TATATAGATTTCTGTAATTC+AGG + Chr5:3866773-3866792 None:intergenic 20.0%
!!! AGCATTTTACTTATGAATTT+GGG - Chr5:3867038-3867057 MsG0580024360.01.T01:intron 20.0%
!!! CAAGATCAATTATTTTATCA+AGG - Chr5:3867462-3867481 MsG0580024360.01.T01:intron 20.0%
! AATAACTGAGATAAATTGAG+AGG - Chr5:3867072-3867091 MsG0580024360.01.T01:intron 25.0%
! ACATATTAGTGATGTATATG+AGG - Chr5:3868398-3868417 MsG0580024360.01.T01:CDS 25.0%
! AGATAGATAGATAATAAGGT+TGG - Chr5:3866792-3866811 MsG0580024360.01.T01:CDS 25.0%
! ATAAATAAACCATCAAGCAT+TGG - Chr5:3868271-3868290 MsG0580024360.01.T01:intron 25.0%
! ATGTGTATATACTTGAAAAG+TGG + Chr5:3868382-3868401 None:intergenic 25.0%
! ATTCAATGTGTAAATTGACA+TGG + Chr5:3868042-3868061 None:intergenic 25.0%
! ATTTGCAAGGAATAAGATAT+GGG - Chr5:3866866-3866885 MsG0580024360.01.T01:intron 25.0%
! CAAATTCATAAGTAAAATGC+TGG + Chr5:3867039-3867058 None:intergenic 25.0%
! GAAAAAATCAAAGTCAATAG+TGG - Chr5:3868083-3868102 MsG0580024360.01.T01:intron 25.0%
! GAAATATGTATGAAATGCAA+AGG + Chr5:3867390-3867409 None:intergenic 25.0%
! TAGAACTATTAAAGGACTAT+TGG - Chr5:3867102-3867121 MsG0580024360.01.T01:intron 25.0%
! TTACACATTGAATAGTTGTT+TGG - Chr5:3868049-3868068 MsG0580024360.01.T01:intron 25.0%
!! CAGCATTTTACTTATGAATT+TGG - Chr5:3867037-3867056 MsG0580024360.01.T01:intron 25.0%
!! CATTTTACTTATGAATTTGG+GGG - Chr5:3867040-3867059 MsG0580024360.01.T01:intron 25.0%
!! GCATTTTACTTATGAATTTG+GGG - Chr5:3867039-3867058 MsG0580024360.01.T01:intron 25.0%
!! TGATATTGCTCATGATTTTT+AGG + Chr5:3868323-3868342 None:intergenic 25.0%
!! TTGTTATTATATAGGAACTG+GGG + Chr5:3867200-3867219 None:intergenic 25.0%
!!! ACTTGTTATTATATAGGAAC+TGG + Chr5:3867202-3867221 None:intergenic 25.0%
!!! ATAGTACTTAGATTTTGAGT+CGG + Chr5:3867959-3867978 None:intergenic 25.0%
!!! CTTGTTATTATATAGGAACT+GGG + Chr5:3867201-3867220 None:intergenic 25.0%
!!! TGGTGTGATTTATTTTAGTT+TGG - Chr5:3866816-3866835 MsG0580024360.01.T01:CDS 25.0%
!!! TTTTTTGAGATGAATCATTC+TGG - Chr5:3866156-3866175 MsG0580024360.01.T01:three_prime_UTR 25.0%
AAACAATAACCAATGCTTGA+TGG + Chr5:3868283-3868302 None:intergenic 30.0%
AAATCCGATAACCTTAAAAC+CGG - Chr5:3868161-3868180 MsG0580024360.01.T01:intron 30.0%
AACATCAGTTGAAGTTATCA+AGG - Chr5:3866200-3866219 MsG0580024360.01.T01:three_prime_UTR 30.0%
AATGCAAAGCATACATAAAG+AGG + Chr5:3868466-3868485 None:intergenic 30.0%
AATGTGTAAATTGACATGGA+TGG + Chr5:3868038-3868057 None:intergenic 30.0%
ACAATTTCATCTACATGACT+TGG + Chr5:3868501-3868520 None:intergenic 30.0%
AGCACCAATCAAATTCAAAA+GGG + Chr5:3866330-3866349 None:intergenic 30.0%
ATCTTGAGAATTGAGATTGT+TGG - Chr5:3867233-3867252 MsG0580024360.01.T01:intron 30.0%
ATTTCTCCATATCAGATATC+AGG - Chr5:3867405-3867424 MsG0580024360.01.T01:intron 30.0%
ATTTCTCTCTCTTTCCAATT+AGG - Chr5:3866658-3866677 MsG0580024360.01.T01:intron 30.0%
CAAAAAAACCTCATTTACCT+TGG + Chr5:3866448-3866467 None:intergenic 30.0%
GAAGTTATCAAGGACAAAAA+TGG - Chr5:3866210-3866229 MsG0580024360.01.T01:three_prime_UTR 30.0%
GATTTGCAAGGAATAAGATA+TGG - Chr5:3866865-3866884 MsG0580024360.01.T01:intron 30.0%
TAGCACCAATCAAATTCAAA+AGG + Chr5:3866331-3866350 None:intergenic 30.0%
TCAATAATCGGCAAAAGTTA+AGG + Chr5:3867589-3867608 None:intergenic 30.0%
TGCTTTAACATTTGAATCTG+AGG - Chr5:3867693-3867712 MsG0580024360.01.T01:CDS 30.0%
TTTCTTCTCATGATCTAGAA+CGG + Chr5:3867863-3867882 None:intergenic 30.0%
! ACTTTGAGAGTAACAATTCA+AGG + Chr5:3866134-3866153 None:intergenic 30.0%
! AGATAGATAATAAGGTTGGT+TGG - Chr5:3866796-3866815 MsG0580024360.01.T01:CDS 30.0%
! AGCATGTTGGTAAAATTTCA+AGG + Chr5:3867784-3867803 None:intergenic 30.0%
! CTACTATCTAAAATTACCTG+TGG + Chr5:3866734-3866753 None:intergenic 30.0%
! GAAATTTTACCAACATGCTA+AGG - Chr5:3867785-3867804 MsG0580024360.01.T01:CDS 30.0%
! GCATGTTGGTAAAATTTCAA+GGG + Chr5:3867783-3867802 None:intergenic 30.0%
! TATATGTGATAGTGATTCGT+AGG - Chr5:3866569-3866588 MsG0580024360.01.T01:CDS 30.0%
! TCTACCCTTTTGAATTTGAT+TGG - Chr5:3866323-3866342 MsG0580024360.01.T01:three_prime_UTR 30.0%
! TGATCTTATCTTGAAAGTGT+TGG + Chr5:3867444-3867463 None:intergenic 30.0%
!! GCGATTCATTTTTCTTTGTA+AGG + Chr5:3867137-3867156 None:intergenic 30.0%
!! TTATCTTGAAAGTGTTGGAA+TGG + Chr5:3867439-3867458 None:intergenic 30.0%
!!! AAAGTCAATAGTGGATTTTG+GGG - Chr5:3868092-3868111 MsG0580024360.01.T01:intron 30.0%
!!! CAAAGTCAATAGTGGATTTT+GGG - Chr5:3868091-3868110 MsG0580024360.01.T01:intron 30.0%
!!! TCAAAGTCAATAGTGGATTT+TGG - Chr5:3868090-3868109 MsG0580024360.01.T01:intron 30.0%
!!! TTATTTTAGTTTGGAAACCG+TGG - Chr5:3866825-3866844 MsG0580024360.01.T01:intron 30.0%
AATCCGATAACCTTAAAACC+GGG - Chr5:3868162-3868181 MsG0580024360.01.T01:intron 35.0%
AATGCAAAGGAGAAACTGAA+AGG + Chr5:3867377-3867396 None:intergenic 35.0%
ACATTTGTGATACGAAAGGA+AGG - Chr5:3867886-3867905 MsG0580024360.01.T01:intron 35.0%
ACGAACATTTGTGATACGAA+AGG - Chr5:3867882-3867901 MsG0580024360.01.T01:intron 35.0%
AGTGCTACATAGGAAATAAC+TGG + Chr5:3866473-3866492 None:intergenic 35.0%
ATATGAAGATATGGCCACAT+AGG - Chr5:3866973-3866992 MsG0580024360.01.T01:CDS 35.0%
ATCTTCATATCGTCTTCAGA+TGG + Chr5:3866963-3866982 None:intergenic 35.0%
ATTACCTGTGGAAAACAGAT+TGG + Chr5:3866722-3866741 None:intergenic 35.0%
CAAATAAGACCTTAGCATGT+TGG + Chr5:3867797-3867816 None:intergenic 35.0%
CAAATTCAAAAGGGTAGATG+CGG + Chr5:3866321-3866340 None:intergenic 35.0%
CTCACTTCACTGTCAATAAT+CGG + Chr5:3867601-3867620 None:intergenic 35.0%
CTGAAGACGATATGAAGATA+TGG - Chr5:3866964-3866983 MsG0580024360.01.T01:CDS 35.0%
GATTATTGACAGTGAAGTGA+GGG - Chr5:3867600-3867619 MsG0580024360.01.T01:intron 35.0%
GTTATTGTTCACTAGTACCA+AGG - Chr5:3866428-3866447 MsG0580024360.01.T01:exon 35.0%
TGAATATGATATCTCGCATC+CGG - Chr5:3867336-3867355 MsG0580024360.01.T01:CDS 35.0%
TGCGAGATATCATATTCAGA+CGG + Chr5:3867334-3867353 None:intergenic 35.0%
TTACCTGTGGAAAACAGATT+GGG + Chr5:3866721-3866740 None:intergenic 35.0%
TTATCTCGATTCTAGCAGTA+TGG - Chr5:3867834-3867853 MsG0580024360.01.T01:intron 35.0%
TTGAAGTCAAGTCAAGTAGA+AGG + Chr5:3868225-3868244 None:intergenic 35.0%
! AATAGTTGTTTGGAATCCCT+GGG - Chr5:3868059-3868078 MsG0580024360.01.T01:intron 35.0%
! GTATCTAGCTACATGCTTTT+GGG + Chr5:3867178-3867197 None:intergenic 35.0%
! TAACATTTGAATCTGAGGTG+AGG - Chr5:3867698-3867717 MsG0580024360.01.T01:CDS 35.0%
!! AAGGTCTTATTTGTGTTAGG+TGG - Chr5:3867804-3867823 MsG0580024360.01.T01:CDS 35.0%
!! GCTAAGGTCTTATTTGTGTT+AGG - Chr5:3867801-3867820 MsG0580024360.01.T01:CDS 35.0%
!!! GACTTTGATTTTTTCTCCCA+GGG + Chr5:3868078-3868097 None:intergenic 35.0%
!!! TGACTTTGATTTTTTCTCCC+AGG + Chr5:3868079-3868098 None:intergenic 35.0%
AAATGAATCGCATCCAAGAG+AGG - Chr5:3867146-3867165 MsG0580024360.01.T01:intron 40.0%
ACACCAATCATAGAAGTGAC+CGG + Chr5:3866519-3866538 None:intergenic 40.0%
CACTAGTACCAAGGTAAATG+AGG - Chr5:3866437-3866456 MsG0580024360.01.T01:CDS 40.0%
CGATTATTGACAGTGAAGTG+AGG - Chr5:3867599-3867618 MsG0580024360.01.T01:intron 40.0%
CTTTCATGGAAAACAGAACG+CGG - Chr5:3866399-3866418 MsG0580024360.01.T01:three_prime_UTR 40.0%
GAAAGACACTTACCAACATC+TGG + Chr5:3867916-3867935 None:intergenic 40.0%
TACGGACCTGATATCTGATA+TGG + Chr5:3867414-3867433 None:intergenic 40.0%
TAGAGCAACATGGATTTGCA+AGG - Chr5:3866853-3866872 MsG0580024360.01.T01:intron 40.0%
! AATCCCAATCTGTTTTCCAC+AGG - Chr5:3866715-3866734 MsG0580024360.01.T01:intron 40.0%
! AGCTTTTCCATTTGAATCCG+TGG + Chr5:3866919-3866938 None:intergenic 40.0%
! CTTCGAATTAAAGGCATGTC+CGG - Chr5:3866497-3866516 MsG0580024360.01.T01:CDS 40.0%
! GAATAGTTGTTTGGAATCCC+TGG - Chr5:3868058-3868077 MsG0580024360.01.T01:intron 40.0%
! GCACTGACACTTCGAATTAA+AGG - Chr5:3866488-3866507 MsG0580024360.01.T01:CDS 40.0%
! GCTTTTCCATTTGAATCCGT+GGG + Chr5:3866918-3866937 None:intergenic 40.0%
! GGTATCTAGCTACATGCTTT+TGG + Chr5:3867179-3867198 None:intergenic 40.0%
!! GAAAGTGTTGGAATGGCATA+CGG + Chr5:3867432-3867451 None:intergenic 40.0%
!! GTTGTGTGTGTGACTTTTTC+AGG - Chr5:3866353-3866372 MsG0580024360.01.T01:three_prime_UTR 40.0%
!!! AATAGTGGATTTTGGGGATG+AGG - Chr5:3868098-3868117 MsG0580024360.01.T01:intron 40.0%
!!! CTTTTTCAGGTTAGCTTGCA+CGG - Chr5:3866366-3866385 MsG0580024360.01.T01:three_prime_UTR 40.0%
!!! TCTCCCGGTTTTAAGGTTAT+CGG + Chr5:3868168-3868187 None:intergenic 40.0%
!!! TGGTTTTGGAGGAGTATAGA+CGG + Chr5:3866684-3866703 None:intergenic 40.0%
!!! TTTTGGGATTTCTCCTCTCT+TGG + Chr5:3867162-3867181 None:intergenic 40.0%
AAGGAACGCTTCACAGAACA+AGG - Chr5:3867667-3867686 MsG0580024360.01.T01:intron 45.0%
AAGGAAGGTCTTCCAGATGT+TGG - Chr5:3867901-3867920 MsG0580024360.01.T01:intron 45.0%
AAGGCTTGCCATTGACATTC+CGG + Chr5:3867358-3867377 None:intergenic 45.0%
ACAGTGAAGTGAGGGTAGAA+GGG - Chr5:3867608-3867627 MsG0580024360.01.T01:intron 45.0%
CATGTTGCTCTAGTGTTCCA+CGG + Chr5:3866845-3866864 None:intergenic 45.0%
CCTGGATAACCTATACCAGA+AGG - Chr5:3867648-3867667 MsG0580024360.01.T01:intron 45.0%
CCTTAAAACCGGGAGAAGAA+TGG - Chr5:3868172-3868191 MsG0580024360.01.T01:intron 45.0%
CCTTCTGGTATAGGTTATCC+AGG + Chr5:3867651-3867670 None:intergenic 45.0%
GTACAACAGAAAGCTCCAAG+CGG + Chr5:3868203-3868222 None:intergenic 45.0%
GTTGTTCTTCGAAACGTTCG+AGG - Chr5:3866243-3866262 MsG0580024360.01.T01:three_prime_UTR 45.0%
TGTCCGGTCACTTCTATGAT+TGG - Chr5:3866513-3866532 MsG0580024360.01.T01:CDS 45.0%
! AGGAGTATAGACGGCCTAAT+TGG + Chr5:3866675-3866694 None:intergenic 45.0%
! CCATTCTTCTCCCGGTTTTA+AGG + Chr5:3868175-3868194 None:intergenic 45.0%
! TCGAAGTGTCAGTGCTACAT+AGG + Chr5:3866483-3866502 None:intergenic 45.0%
! TGAAGCGTTCCTTCTGGTAT+AGG + Chr5:3867660-3867679 None:intergenic 45.0%
!! ATCAGACACAGCACTGATAC+TGG + Chr5:3866550-3866569 None:intergenic 45.0%
!!! ATTCCTCCTCGTACTGGTTT+TGG + Chr5:3866698-3866717 None:intergenic 45.0%
AAACCGGGAGAAGAATGGAC+CGG - Chr5:3868177-3868196 MsG0580024360.01.T01:intron 50.0%
AAGCAAATGCTCTGCGTGGA+TGG - Chr5:3868126-3868145 MsG0580024360.01.T01:intron 50.0%
ACGGAGGGCAAGTTCTTTCA+TGG - Chr5:3866385-3866404 MsG0580024360.01.T01:three_prime_UTR 50.0%
ACTCCTCCAAAACCAGTACG+AGG - Chr5:3866689-3866708 MsG0580024360.01.T01:intron 50.0%
ATTGGGATTCCTCCTCGTAC+TGG + Chr5:3866704-3866723 None:intergenic 50.0%
CGTGGAACACTAGAGCAACA+TGG - Chr5:3866843-3866862 MsG0580024360.01.T01:intron 50.0%
GACAGTGAAGTGAGGGTAGA+AGG - Chr5:3867607-3867626 MsG0580024360.01.T01:intron 50.0%
GTACAAGCAAATGCTCTGCG+TGG - Chr5:3868122-3868141 MsG0580024360.01.T01:intron 50.0%
GTTGGAGACTCTTGACTACC+TGG - Chr5:3867630-3867649 MsG0580024360.01.T01:intron 50.0%
GTTTCGCCTAAGGGTCTGTT+TGG - Chr5:3867298-3867317 MsG0580024360.01.T01:CDS 50.0%
TCTCGCATCCGGAATGTCAA+TGG - Chr5:3867347-3867366 MsG0580024360.01.T01:CDS 50.0%
TGAAGTGAGGGTAGAAGGGT+TGG - Chr5:3867612-3867631 MsG0580024360.01.T01:intron 50.0%
! CAGCTTCGAGTTTCGCCTAA+GGG - Chr5:3867289-3867308 MsG0580024360.01.T01:CDS 50.0%
! GTTCTGTGAAGCGTTCCTTC+TGG + Chr5:3867666-3867685 None:intergenic 50.0%
! TCAGCTTCGAGTTTCGCCTA+AGG - Chr5:3867288-3867307 MsG0580024360.01.T01:CDS 50.0%
!! TTCAGGTTAGCTTGCACGGA+GGG - Chr5:3866370-3866389 MsG0580024360.01.T01:three_prime_UTR 50.0%
!! TTTCAGGTTAGCTTGCACGG+AGG - Chr5:3866369-3866388 MsG0580024360.01.T01:three_prime_UTR 50.0%
AAATCCTCCACCACTGCCCA+CGG - Chr5:3866899-3866918 MsG0580024360.01.T01:intron 55.0%
AACAGAAAGCTCCAAGCGGC+CGG + Chr5:3868199-3868218 None:intergenic 55.0%
AGGGTCTGTTTGGCAGCAGA+TGG - Chr5:3867308-3867327 MsG0580024360.01.T01:CDS 55.0%
CCACTGCCCACGGATTCAAA+TGG - Chr5:3866909-3866928 MsG0580024360.01.T01:intron 55.0%
CCATTTGAATCCGTGGGCAG+TGG + Chr5:3866912-3866931 None:intergenic 55.0%
CCTCCAAAACCAGTACGAGG+AGG - Chr5:3866692-3866711 MsG0580024360.01.T01:intron 55.0%
CGTTCGAGGAGCTTCAGCAA+CGG - Chr5:3866257-3866276 MsG0580024360.01.T01:three_prime_UTR 55.0%
CTGCTGCCAAACAGACCCTT+AGG + Chr5:3867307-3867326 None:intergenic 55.0%
TAAAGCGCGTCGCACCTATG+TGG + Chr5:3866990-3867009 None:intergenic 55.0%
TTTGAATCCGTGGGCAGTGG+TGG + Chr5:3866909-3866928 None:intergenic 55.0%
!!! CCTCCTCGTACTGGTTTTGG+AGG + Chr5:3866695-3866714 None:intergenic 55.0%
AGAAGAATGGACCGGCCGCT+TGG - Chr5:3868185-3868204 MsG0580024360.01.T01:intron 60.0%
TGCGTGGATGGTGCAGCAGT+TGG - Chr5:3868138-3868157 MsG0580024360.01.T01:intron 60.0%
CGGCCGGTCCATTCTTCTCC+CGG + Chr5:3868183-3868202 None:intergenic 65.0%
GAATCCGTGGGCAGTGGTGG+AGG + Chr5:3866906-3866925 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
Chr5 gene 3866087 3868576 3866087 ID=MsG0580024360.01;Name=MsG0580024360.01
Chr5 mRNA 3866087 3868576 3866087 ID=MsG0580024360.01.T01;Parent=MsG0580024360.01;Name=MsG0580024360.01.T01;_AED=0.47;_eAED=0.47;_QI=78|1|1|1|0.85|0.87|8|343|304
Chr5 exon 3866087 3866599 3866087 ID=MsG0580024360.01.T01:exon:1265;Parent=MsG0580024360.01.T01
Chr5 exon 3866741 3866840 3866741 ID=MsG0580024360.01.T01:exon:1264;Parent=MsG0580024360.01.T01
Chr5 exon 3866949 3867051 3866949 ID=MsG0580024360.01.T01:exon:1263;Parent=MsG0580024360.01.T01
Chr5 exon 3867237 3867371 3867237 ID=MsG0580024360.01.T01:exon:1262;Parent=MsG0580024360.01.T01
Chr5 exon 3867669 3867829 3867669 ID=MsG0580024360.01.T01:exon:1261;Parent=MsG0580024360.01.T01
Chr5 exon 3867927 3867983 3867927 ID=MsG0580024360.01.T01:exon:1260;Parent=MsG0580024360.01.T01
Chr5 exon 3868214 3868288 3868214 ID=MsG0580024360.01.T01:exon:1259;Parent=MsG0580024360.01.T01
Chr5 exon 3868385 3868576 3868385 ID=MsG0580024360.01.T01:exon:1258;Parent=MsG0580024360.01.T01
Chr5 five_prime_UTR 3868499 3868576 3868499 ID=MsG0580024360.01.T01:five_prime_utr;Parent=MsG0580024360.01.T01
Chr5 CDS 3868385 3868498 3868385 ID=MsG0580024360.01.T01:cds;Parent=MsG0580024360.01.T01
Chr5 CDS 3868214 3868288 3868214 ID=MsG0580024360.01.T01:cds;Parent=MsG0580024360.01.T01
Chr5 CDS 3867927 3867983 3867927 ID=MsG0580024360.01.T01:cds;Parent=MsG0580024360.01.T01
Chr5 CDS 3867669 3867829 3867669 ID=MsG0580024360.01.T01:cds;Parent=MsG0580024360.01.T01
Chr5 CDS 3867237 3867371 3867237 ID=MsG0580024360.01.T01:cds;Parent=MsG0580024360.01.T01
Chr5 CDS 3866949 3867051 3866949 ID=MsG0580024360.01.T01:cds;Parent=MsG0580024360.01.T01
Chr5 CDS 3866741 3866840 3866741 ID=MsG0580024360.01.T01:cds;Parent=MsG0580024360.01.T01
Chr5 CDS 3866430 3866599 3866430 ID=MsG0580024360.01.T01:cds;Parent=MsG0580024360.01.T01
Chr5 three_prime_UTR 3866087 3866429 3866087 ID=MsG0580024360.01.T01:three_prime_utr;Parent=MsG0580024360.01.T01
Gene Sequence

>MsG0580024360.01.T01

ATGAATCATTCTGGAGCTGAAAGTGATCATAAAATAACATCAGTTGAAGTTATCAAGGACAAAAATGGAATAGAACAAGTTGTTCTTCGAAACGTTCGAGGAGCTTCAGCAACGGTTAGCTTGCACGGAGGGCAAGTTCTTTCATGGAAAACAGAACGCGGTGAAGAGTTATTGTTCACTAGTACCAAGGCCGTCTATACTCCTCCAAAACCAGTACGAGGAGGAATCCCAATCTGTTTTCCACAGTTTGGAAACCGTGGAACACTAGAGCAACATGGATTTGCAAGGAATAAGATATGGGTTATCGATCAAAATCCTCCACCACTGCCCACGGATTCAAATGGAAAAGCTTGCATCGACTTGCTGCTCAAACCATCTGAAGACGATATGAAGATATGGCCACATAGCTTCGAGTTTCGCCTAAGGGTCTGTTTGGCAGCAGATGGCCGTCTGAATATGATATCTCGCATCCGGAATGTCAATGGCAAGCCTTTCAGTTTCTCCTTTGCATTTCATACATATTTCTCCATATCAGATATCAGTGAAGTGAGGGTAGAAGGGTTGGAGACTCTTGACTACCTGGATAACCTATACCAGAAGGAACGCTTCACAGAACAAGGAGATGCTTTAACATTTGAATCTGAGGTGGATCGAGTTTATCTCGATTCTAGCAGTATGGTAGCCGTTCTAGATCATGAGAAGAAACGAACATTTGTGATACGAAAGGAAGGTCTTCCAGATGTTGTTGTTTGGAATCCCTGGGAGAAAAAATCAAAGTCAATAGTGGATTTTGGGGATGAGGAGTACAAGCAAATGCTCTGCGTGGATGGTGCAGCAGTTGGAAATCCGATAACCTTAAAACCGGGAGAAGAATGGACCGGCCGCTTGGAGCTTTCTGTTGTACCTTCTACTTGA

Protein sequence

>MsG0580024360.01.T01

MNHSGAESDHKITSVEVIKDKNGIEQVVLRNVRGASATVSLHGGQVLSWKTERGEELLFTSTKAVYTPPKPVRGGIPICFPQFGNRGTLEQHGFARNKIWVIDQNPPPLPTDSNGKACIDLLLKPSEDDMKIWPHSFEFRLRVCLAADGRLNMISRIRNVNGKPFSFSFAFHTYFSISDISEVRVEGLETLDYLDNLYQKERFTEQGDALTFESEVDRVYLDSSSMVAVLDHEKKRTFVIRKEGLPDVVVWNPWEKKSKSIVDFGDEEYKQMLCVDGAAVGNPITLKPGEEWTGRLELSVVPST*