AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0680030534.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0680030534.01.T01 MTR_6g017000 83.403 958 96 4 1 909 1 944 0.0 1603
MsG0680030534.01.T01 MTR_3g107960 46.527 1094 384 26 2 925 15 1077 0.0 857
MsG0680030534.01.T01 MTR_5g085310 47.904 1002 327 23 14 923 19 917 0.0 814
MsG0680030534.01.T01 MTR_3g101100 51.702 793 237 16 244 924 500 1258 0.0 747
MsG0680030534.01.T01 MTR_3g101100 43.850 187 72 6 3 169 16 189 3.68e-30 129
MsG0680030534.01.T01 MTR_6g017140 72.878 483 50 4 448 880 2 453 0.0 699
MsG0680030534.01.T01 MTR_6g017010 58.091 618 172 15 362 922 58 645 0.0 655
MsG0680030534.01.T01 MTR_4g005050 46.434 631 261 12 348 906 902 1527 3.85e-164 523
MsG0680030534.01.T01 MTR_5g017020 52.058 486 136 9 478 906 21 466 1.33e-151 458
MsG0680030534.01.T01 MTR_5g017020 52.058 486 136 9 478 906 21 466 1.64e-151 459
MsG0680030534.01.T01 MTR_6g017135 66.406 128 33 4 583 708 4 123 1.81e-46 163
MsG0680030534.01.T01 MTR_1g047930 77.551 98 22 0 571 668 277 374 9.07e-44 163
MsG0680030534.01.T01 MTR_1g047930 34.061 229 90 8 237 433 75 274 5.21e-17 84.3
MsG0680030534.01.T01 MTR_6g017120 71.277 94 26 1 650 743 8 100 3.54e-40 145
MsG0680030534.01.T01 MTR_0299s0030 32.787 244 66 5 754 904 61 299 1.20e-25 109
MsG0680030534.01.T01 MTR_5g085317 50.505 99 44 2 733 831 1 94 6.63e-24 98.2
MsG0680030534.01.T01 MTR_1g047940 38.961 154 41 3 729 882 4 104 6.47e-22 95.1
MsG0680030534.01.T01 MTR_6g017130 68.852 61 19 0 850 910 272 332 6.47e-18 87.4
MsG0680030534.01.T01 MTR_6g016945 30.769 247 86 10 259 483 65 248 3.61e-13 71.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0680030534.01.T01 AT1G79000 46.753 616 252 11 362 906 904 1514 5.83e-171 541
MsG0680030534.01.T01 AT3G12980 45.540 639 273 11 341 909 783 1416 6.29e-171 539
MsG0680030534.01.T01 AT1G79000 46.753 616 252 11 362 906 880 1490 8.28e-171 540
MsG0680030534.01.T01 AT3G12980 45.540 639 273 11 341 909 864 1497 1.45e-170 540
MsG0680030534.01.T01 AT1G79000 46.753 616 252 11 362 906 904 1514 1.65e-170 541
MsG0680030534.01.T01 AT1G16710 47.565 616 247 10 362 906 848 1458 3.91e-168 533
MsG0680030534.01.T01 AT1G16710 47.565 616 247 10 362 906 848 1458 3.91e-168 533
MsG0680030534.01.T01 AT1G16710 47.565 616 247 10 362 906 848 1458 3.91e-168 533
MsG0680030534.01.T01 AT1G16710 47.565 616 247 10 362 906 884 1494 4.30e-168 533
MsG0680030534.01.T01 AT1G16710 47.565 616 247 10 362 906 887 1497 5.66e-168 533
MsG0680030534.01.T01 AT1G16710 47.565 616 247 10 362 906 887 1497 5.66e-168 533
MsG0680030534.01.T01 AT1G16710 47.565 616 247 10 362 906 887 1497 5.66e-168 533
MsG0680030534.01.T01 AT1G16710 47.565 616 247 10 362 906 887 1497 5.66e-168 533
MsG0680030534.01.T01 AT1G16710 47.565 616 247 10 362 906 913 1523 6.09e-168 533
MsG0680030534.01.T01 AT1G16710 51.485 505 224 8 362 850 887 1386 4.00e-155 494
MsG0680030534.01.T01 AT1G55970 42.543 637 272 13 343 906 661 1276 1.05e-149 479
MsG0680030534.01.T01 AT1G55970 41.915 637 290 12 343 906 661 1290 6.78e-149 478
MsG0680030534.01.T01 AT1G67220 41.579 570 305 12 301 850 537 1098 2.48e-127 417

Find 152 sgRNAs with CRISPR-Local

Find 252 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTTATAACATAACTGTTTC+TGG 0.105241 6:-4879842 MsG0680030534.01.T01:CDS
GCTTCTTAGGCAATATAATT+TGG 0.186038 6:+4876620 None:intergenic
ACTGAAAAGTAGATCTTTAA+AGG 0.210937 6:-4877130 MsG0680030534.01.T01:CDS
AAATCCCCTTAAAAGATATT+TGG 0.224371 6:-4878396 MsG0680030534.01.T01:CDS
CAACAACAAAAGACGGAAAA+TGG 0.262092 6:-4879524 MsG0680030534.01.T01:CDS
AAAGATATTTGGACTGCTTT+TGG 0.270452 6:-4878385 MsG0680030534.01.T01:CDS
CAAGATCATCTGCCCCTTCC+TGG 0.286260 6:+4879398 None:intergenic
CTTGATTCAACTTGTGTTGA+TGG 0.297810 6:+4876371 None:intergenic
TTCTCTACATCAATAGGAAT+TGG 0.299485 6:+4879283 None:intergenic
ATCACAGAAATTAGATATTC+AGG 0.303845 6:-4879566 MsG0680030534.01.T01:CDS
GACTGTGAAGAAGCAGTTTC+GGG 0.306974 6:-4878092 MsG0680030534.01.T01:CDS
CAAACTGAAAATAATTCTTT+TGG 0.311491 6:+4876476 None:intergenic
TGCTCTACATCAATAGGAAT+TGG 0.311866 6:+4879145 None:intergenic
AATCGAAATGGTAACTATTT+CGG 0.312321 6:-4878775 MsG0680030534.01.T01:CDS
TGAGAAAATTGCAACTGTTC+TGG 0.312476 6:-4880136 MsG0680030534.01.T01:CDS
TTTCTTCTCTCTCTTGCATT+AGG 0.317914 6:+4878302 None:intergenic
AGCACATGTGGGGATTGATT+TGG 0.318710 6:+4879877 None:intergenic
GCTCGTCTTCCGTACTTTGA+TGG 0.323001 6:-4877240 MsG0680030534.01.T01:CDS
GCTATGTATGTCCAGGAGTT+TGG 0.325884 6:-4877886 MsG0680030534.01.T01:CDS
ATTTGTTTACCATGAGATAT+TGG 0.337059 6:-4877755 MsG0680030534.01.T01:intron
GCACATGTGGGGATTGATTT+GGG 0.338539 6:+4879878 None:intergenic
TTCCGTAGCTTATCATCCTT+TGG 0.342126 6:+4877483 None:intergenic
AGGAAAAGCAAAAGACATTC+TGG 0.348128 6:-4877082 MsG0680030534.01.T01:CDS
AAAGAGTGCGGAGGCGACTA+TGG 0.349488 6:-4877171 MsG0680030534.01.T01:CDS
AAATCATTGGAAAATTCTTC+AGG 0.349603 6:+4879640 None:intergenic
CTCTTAAAAGAGATTGAAAA+TGG 0.350247 6:-4878424 MsG0680030534.01.T01:CDS
TGCACTCTATAACAAAGATT+TGG 0.356515 6:-4878479 MsG0680030534.01.T01:CDS
AATATATACGCAGCGTTGAT+TGG 0.372520 6:+4877846 None:intergenic
CTTCTATTTCAGAAGATTGA+AGG 0.372760 6:-4877928 MsG0680030534.01.T01:CDS
TCAACGTGTGGCAGCTGAAC+TGG 0.379094 6:-4879975 MsG0680030534.01.T01:CDS
GTTCTTTCATTGCACATAGT+TGG 0.400719 6:+4878848 None:intergenic
ATCATTCTCTTTAGTGTTGA+CGG 0.408990 6:+4876552 None:intergenic
TAATTGGATTAACTGCAAAC+TGG 0.415917 6:+4880163 None:intergenic
AACATAACTGTTTCTGGTGG+TGG 0.421072 6:-4879836 MsG0680030534.01.T01:CDS
AAGACGATCACGCCAGTTTG+TGG 0.421139 6:+4880337 None:intergenic
TGACTGTGAAGAAGCAGTTT+CGG 0.423449 6:-4878093 MsG0680030534.01.T01:CDS
CATCAATAGGAATTGGAACT+TGG 0.425428 6:+4879152 None:intergenic
CATCAATAGGAATTGGAACT+TGG 0.425428 6:+4879290 None:intergenic
CTGCTGGTCTGCTGCCGCTA+TGG 0.430604 6:-4877214 MsG0680030534.01.T01:CDS
TGATGAAGTAATTAATGAAC+CGG 0.431296 6:-4878629 MsG0680030534.01.T01:intron
ACTAAAGAAAATGTAGTTGT+TGG 0.437632 6:-4877327 MsG0680030534.01.T01:CDS
GAAGAAAGGCAGAAAATTCA+AGG 0.437883 6:-4878286 MsG0680030534.01.T01:CDS
AAGTAGATCTTTAAAGGCCG+TGG 0.441650 6:-4877124 MsG0680030534.01.T01:CDS
TCATTCTCTTTAGTGTTGAC+GGG 0.442931 6:+4876553 None:intergenic
CCAGATGTCAGGAAAATCAT+TGG 0.443215 6:+4879627 None:intergenic
TATCAGTTCATTTACTTGAT+CGG 0.446537 6:+4879219 None:intergenic
ATATATACGCAGCGTTGATT+GGG 0.447552 6:+4877847 None:intergenic
GATCAGCATCTGTCCCCTCC+TGG 0.450562 6:+4879098 None:intergenic
AAGTGATACACAGCCGCAAT+TGG 0.454983 6:-4880313 MsG0680030534.01.T01:CDS
CCGCTTGTAGTCTGTCTTCG+AGG 0.458583 6:+4877793 None:intergenic
CAAGAGGGTTCTCCACAAAC+TGG 0.463346 6:-4880349 MsG0680030534.01.T01:CDS
GCGGACACATCACATTCAAC+TGG 0.464376 6:-4878690 MsG0680030534.01.T01:CDS
TAGTATTCTTTAGATGATAG+AGG 0.468348 6:+4876416 None:intergenic
ATTTGTGTCTGCTGATTCAA+AGG 0.469536 6:-4880103 MsG0680030534.01.T01:intron
CTCTATATGGTCACTAAGAA+CGG 0.469718 6:+4878342 None:intergenic
GATCGGCATCTATCTTCTCC+TGG 0.470208 6:+4879236 None:intergenic
CAGTTTGTGGAGAACCCTCT+TGG 0.476257 6:+4880350 None:intergenic
GATCTATAAGAGAATTCAGC+AGG 0.480043 6:+4878046 None:intergenic
TGACGTCTCTATTCAACATA+AGG 0.480204 6:-4879491 MsG0680030534.01.T01:CDS
GGCAAATGCATCAATCGAAA+TGG 0.480918 6:-4878787 MsG0680030534.01.T01:CDS
AGACATTCTGGTGATGGAAA+AGG 0.491080 6:-4877070 MsG0680030534.01.T01:intron
AAAAGACGGAAAATGGAGTC+TGG 0.492559 6:-4879517 MsG0680030534.01.T01:CDS
AATCCCCACATGTGCTGATA+CGG 0.494238 6:-4879870 MsG0680030534.01.T01:CDS
CACGTTGATTCAATGTCTCC+AGG 0.497461 6:+4879990 None:intergenic
CAACTGGACATCTGTTTCAA+AGG 0.499926 6:-4878674 MsG0680030534.01.T01:CDS
TCAGCAGGGTAATTCTCCTC+TGG 0.499997 6:+4878061 None:intergenic
CAAAACTAATCATAATTCAA+TGG 0.500871 6:-4879356 MsG0680030534.01.T01:CDS
GACGGCATCATTTACTTGAT+CGG 0.505453 6:+4879180 None:intergenic
AGACAGAACGGTATTTCGCC+AGG 0.510161 6:-4879416 MsG0680030534.01.T01:CDS
GGCAGCTCGTGCGCAACAGA+AGG 0.512418 6:+4879908 None:intergenic
CACATTCCGAGCCAAACTCC+TGG 0.512470 6:+4877875 None:intergenic
GATCATCATTGAGGAATACT+TGG 0.514161 6:+4876438 None:intergenic
CATATTTGCTATGTATGTCC+AGG 0.515033 6:-4877893 MsG0680030534.01.T01:CDS
AACGGTATTTCGCCAGGAAG+GGG 0.517410 6:-4879410 MsG0680030534.01.T01:CDS
AACTATGTTCTTACCAGCAC+CGG 0.519100 6:+4876331 None:intergenic
AGCAAAAGACATTCTGGTGA+TGG 0.519846 6:-4877076 MsG0680030534.01.T01:CDS
AGACGAGTTAAATCAGAAAC+CGG 0.521839 6:-4876350 MsG0680030534.01.T01:CDS
TCTATACAAGACCAGATGTC+AGG 0.521898 6:+4879616 None:intergenic
AATTCAATGGAAATTGACAT+TGG 0.523143 6:-4879343 MsG0680030534.01.T01:CDS
CACATTTCACATATATTCAA+CGG 0.526046 6:-4880415 MsG0680030534.01.T01:CDS
AAGACGAGCTGTTGTTACCT+TGG 0.526197 6:+4877254 None:intergenic
GGGATTGATTTGGGCAAAGG+AGG 0.534671 6:+4879887 None:intergenic
GTATCTTTCAATGCTTTCAA+AGG 0.535559 6:-4877352 MsG0680030534.01.T01:CDS
CGTACTTTGATGGAGACTGC+TGG 0.541359 6:-4877230 MsG0680030534.01.T01:CDS
TATCATCAGATCGGGTACCT+TGG 0.544550 6:-4877612 MsG0680030534.01.T01:intron
AATGCAATAAATGCAAAAGA+TGG 0.545817 6:-4878516 MsG0680030534.01.T01:CDS
CAGGAGTTTGGCTCGGAATG+TGG 0.550083 6:-4877874 MsG0680030534.01.T01:CDS
GTGGGGATTGATTTGGGCAA+AGG 0.551569 6:+4879884 None:intergenic
AGAACGGTATTTCGCCAGGA+AGG 0.552451 6:-4879412 MsG0680030534.01.T01:CDS
TCTGATTGCTATAAGTCTAA+AGG 0.554553 6:-4878712 MsG0680030534.01.T01:CDS
AATTGGAACTTGGCTTATGA+CGG 0.555170 6:+4879162 None:intergenic
AATTGGAACTTGGCTTATGA+CGG 0.555170 6:+4879300 None:intergenic
AAATTGCAACTGTTCTGGAA+TGG 0.557114 6:-4880131 MsG0680030534.01.T01:CDS
CTCGTTTCTTACAGAAGCCA+AGG 0.560475 6:+4877595 None:intergenic
CTGCACGCCATAATAAGCAT+TGG 0.561499 6:+4879931 None:intergenic
CATATCCGTATCAGCACATG+TGG 0.562265 6:+4879865 None:intergenic
CGCCAAAGGATGATAAGCTA+CGG 0.566464 6:-4877485 MsG0680030534.01.T01:CDS
CAATTATGTGCATGTTGTTG+AGG 0.568088 6:+4879803 None:intergenic
TCAGAGCAAAAGCAACACTC+TGG 0.573943 6:+4878730 None:intergenic
GTGGAGAATGATATGACAAT+GGG 0.574635 6:-4879667 MsG0680030534.01.T01:CDS
TACTGAAACACGGCACTCCA+AGG 0.577316 6:-4877271 MsG0680030534.01.T01:CDS
ATCAAATTACCAATATCTCA+TGG 0.577516 6:+4877746 None:intergenic
ATGATATCAACAACAAAAGA+CGG 0.579602 6:-4879531 MsG0680030534.01.T01:CDS
GAACGGTATTTCGCCAGGAA+GGG 0.582247 6:-4879411 MsG0680030534.01.T01:CDS
CAGCAGTCTCCATCAAAGTA+CGG 0.583174 6:+4877231 None:intergenic
GTTAAATCAGAAACCGGTGC+TGG 0.584478 6:-4876344 MsG0680030534.01.T01:CDS
AGCACACTTGCAGTTCTCTG+TGG 0.588069 6:-4876584 MsG0680030534.01.T01:CDS
TTTCATTTCTCATCCAATTG+CGG 0.588428 6:+4880300 None:intergenic
TCTCAAATAATGCATTCTCA+AGG 0.590406 6:+4876524 None:intergenic
GAACAAATGATCATACATGT+TGG 0.592322 6:+4877299 None:intergenic
CATTCTCTTTAGTGTTGACG+GGG 0.594931 6:+4876554 None:intergenic
GGGAGGATTGACGTATCCCA+CGG 0.599289 6:+4877107 None:intergenic
CCTCGAAGACAGACTACAAG+CGG 0.602943 6:-4877793 MsG0680030534.01.T01:CDS
GTATGTCCAGGAGTTTGGCT+CGG 0.605223 6:-4877881 MsG0680030534.01.T01:CDS
TAATGCAAGAGAGAGAAGAA+AGG 0.607310 6:-4878300 MsG0680030534.01.T01:CDS
TTGCAACTGTTCTGGAATGG+AGG 0.607404 6:-4880128 MsG0680030534.01.T01:CDS
GTGGCAGCTGAACTGGATGA+TGG 0.610265 6:-4879968 MsG0680030534.01.T01:CDS
AGTAGATCTTTAAAGGCCGT+GGG 0.610890 6:-4877123 MsG0680030534.01.T01:CDS
AGGATGATAAGCTACGGAAG+TGG 0.611559 6:-4877479 MsG0680030534.01.T01:intron
ATGATAGAGGATCATCATTG+AGG 0.612365 6:+4876429 None:intergenic
CTTGGCTTCTGTAAGAAACG+AGG 0.615844 6:-4877594 MsG0680030534.01.T01:CDS
TATAACATAACTGTTTCTGG+TGG 0.617800 6:-4879839 MsG0680030534.01.T01:CDS
AAATGTGGTTGAAAATCTGT+AGG 0.617821 6:+4880431 None:intergenic
AAGAAAGGCAGAAAATTCAA+GGG 0.618302 6:-4878285 MsG0680030534.01.T01:CDS
AAAACTGTAGGTTAAAGTTG+CGG 0.622973 6:-4878158 MsG0680030534.01.T01:intron
GCAGGAAGCATATATGAACC+TGG 0.623230 6:-4880008 MsG0680030534.01.T01:intron
TGATGATGATGCTGATGAAG+AGG 0.626410 6:-4879446 MsG0680030534.01.T01:CDS
GAATTGGAATCAACCAGGAG+GGG 0.627423 6:-4879111 MsG0680030534.01.T01:CDS
ATGTATGAACATATCAATCG+AGG 0.632486 6:+4879057 None:intergenic
GCAGATGATCTTGAAAGACA+TGG 0.634142 6:-4879388 MsG0680030534.01.T01:CDS
TCATTGAGGAATACTTGGCA+TGG 0.635850 6:+4876443 None:intergenic
GATATCTAATAAAACCAAGA+GGG 0.638021 6:-4880364 MsG0680030534.01.T01:CDS
AGACAGAAATGGATTCAACC+AGG 0.645046 6:-4879254 MsG0680030534.01.T01:CDS
AGAATTGGAATCAACCAGGA+GGG 0.645445 6:-4879112 MsG0680030534.01.T01:CDS
AGTGGAGAATGATATGACAA+TGG 0.657656 6:-4879668 MsG0680030534.01.T01:CDS
CGTTGAATATATGTGAAATG+TGG 0.658283 6:+4880416 None:intergenic
CGATATCTAATAAAACCAAG+AGG 0.658787 6:-4880365 MsG0680030534.01.T01:CDS
GTTTCGGGACATCATTCCAG+AGG 0.658816 6:-4878077 MsG0680030534.01.T01:CDS
TGTTCGTTTCTACTGAAACA+CGG 0.661488 6:-4877281 MsG0680030534.01.T01:CDS
TATCCGTATCAGCACATGTG+GGG 0.667781 6:+4879867 None:intergenic
GGATACGTCAATCCTCCCAA+AGG 0.668043 6:-4877102 MsG0680030534.01.T01:CDS
AGACAGAATTGGAATCAACC+AGG 0.669400 6:-4879116 MsG0680030534.01.T01:CDS
ATATCCGTATCAGCACATGT+GGG 0.673478 6:+4879866 None:intergenic
TTGAGGAATACTTGGCATGG+CGG 0.676391 6:+4876446 None:intergenic
ATCTATAAGAGAATTCAGCA+GGG 0.680316 6:+4878047 None:intergenic
AGAGGACATTCAAGACAGAA+CGG 0.684608 6:-4879428 MsG0680030534.01.T01:CDS
CTTAACACAGAGTACAACTG+CGG 0.691052 6:-4878887 MsG0680030534.01.T01:intron
GGAGACATTGAATCAACGTG+TGG 0.696671 6:-4879987 MsG0680030534.01.T01:CDS
GATTGCTATAAGTCTAAAGG+CGG 0.698910 6:-4878709 MsG0680030534.01.T01:CDS
CAGAATTGGAATCAACCAGG+AGG 0.707184 6:-4879113 MsG0680030534.01.T01:CDS
AGGGAACGAAAATCTTGACG+AGG 0.759037 6:-4878266 MsG0680030534.01.T01:intron
GATCTCGGCATGATCCATAG+CGG 0.760520 6:+4877200 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAACTGAATTATATATTAAA+GGG + Chr6:4878182-4878201 None:intergenic 10.0%
!! AATAAATATACCACAAATAA+CGG + Chr6:4877035-4877054 None:intergenic 15.0%
!! CAAACTGAATTATATATTAA+AGG + Chr6:4878183-4878202 None:intergenic 15.0%
!! TCTATATTAAAAGTTTGAAT+TGG - Chr6:4879737-4879756 MsG0680030534.01.T01:intron 15.0%
!! CAAAACTAATCATAATTCAA+TGG - Chr6:4877417-4877436 MsG0680030534.01.T01:intron 20.0%
!! CAAAGAATATAAATACTCAA+TGG + Chr6:4879392-4879411 None:intergenic 20.0%
!! TGAATTGGTTATTAGTAAAT+TGG - Chr6:4879752-4879771 MsG0680030534.01.T01:intron 20.0%
!! TTCATAACAAAATCTTCATT+AGG + Chr6:4877816-4877835 None:intergenic 20.0%
!! TTGATATAAATAGCAAGATT+TGG + Chr6:4879964-4879983 None:intergenic 20.0%
!!! AAGATTTTGTTATGAAATTG+AGG - Chr6:4877820-4877839 MsG0680030534.01.T01:CDS 20.0%
!!! AATATAAAAGCATATCAGTT+TGG + Chr6:4880029-4880048 None:intergenic 20.0%
!!! ATTGATTTATGCTTTTTTCT+TGG + Chr6:4879831-4879850 None:intergenic 20.0%
!!! CAAAAATTCTTTTCTCTATA+TGG + Chr6:4878447-4878466 None:intergenic 20.0%
!!! CAAACTGAAAATAATTCTTT+TGG + Chr6:4880300-4880319 None:intergenic 20.0%
!!! GCAATTTTCTCATTATTAAT+TGG + Chr6:4876629-4876648 None:intergenic 20.0%
!!! TATTTTTTCTATCATCAGAT+CGG - Chr6:4879152-4879171 MsG0680030534.01.T01:CDS 20.0%
!!! TGATTTTAAAAAATGCATAC+TGG - Chr6:4879863-4879882 MsG0680030534.01.T01:CDS 20.0%
!!! TGCTATTTATATCAAGATAT+AGG - Chr6:4879969-4879988 MsG0680030534.01.T01:CDS 20.0%
!!! TTTTAGTTTCACATTAAAAG+TGG - Chr6:4876505-4876524 MsG0680030534.01.T01:CDS 20.0%
! AAATCATTGGAAAATTCTTC+AGG + Chr6:4877136-4877155 None:intergenic 25.0%
! AAATCCCCTTAAAAGATATT+TGG - Chr6:4878377-4878396 MsG0680030534.01.T01:CDS 25.0%
! AATCGAAATGGTAACTATTT+CGG - Chr6:4877998-4878017 MsG0680030534.01.T01:intron 25.0%
! AATGCAATAAATGCAAAAGA+TGG - Chr6:4878257-4878276 MsG0680030534.01.T01:intron 25.0%
! AATTCAATGGAAATTGACAT+TGG - Chr6:4877430-4877449 MsG0680030534.01.T01:intron 25.0%
! ACTAAAGAAAATGTAGTTGT+TGG - Chr6:4879446-4879465 MsG0680030534.01.T01:CDS 25.0%
! ACTGAAAAGTAGATCTTTAA+AGG - Chr6:4879643-4879662 MsG0680030534.01.T01:CDS 25.0%
! ATCAAATTACCAATATCTCA+TGG + Chr6:4879030-4879049 None:intergenic 25.0%
! ATCACAGAAATTAGATATTC+AGG - Chr6:4877207-4877226 MsG0680030534.01.T01:CDS 25.0%
! ATGATATCAACAACAAAAGA+CGG - Chr6:4877242-4877261 MsG0680030534.01.T01:CDS 25.0%
! ATTTGTTTACCATGAGATAT+TGG - Chr6:4879018-4879037 MsG0680030534.01.T01:CDS 25.0%
! CACATTTCACATATATTCAA+CGG - Chr6:4876358-4876377 MsG0680030534.01.T01:CDS 25.0%
! CTCTTAAAAGAGATTGAAAA+TGG - Chr6:4878349-4878368 MsG0680030534.01.T01:CDS 25.0%
! CTTTATAACATAACTGTTTC+TGG - Chr6:4876931-4876950 MsG0680030534.01.T01:intron 25.0%
! GATATCTAATAAAACCAAGA+GGG - Chr6:4876409-4876428 MsG0680030534.01.T01:CDS 25.0%
! TAGTATTCTTTAGATGATAG+AGG + Chr6:4880360-4880379 None:intergenic 25.0%
! TATCAGTTCATTTACTTGAT+CGG + Chr6:4877557-4877576 None:intergenic 25.0%
! TGATGAAGTAATTAATGAAC+CGG - Chr6:4878144-4878163 MsG0680030534.01.T01:CDS 25.0%
! TTAAATAACAGAATTTCCTG+TGG - Chr6:4878810-4878829 MsG0680030534.01.T01:CDS 25.0%
!! AAACTAAGGGTATATTTGAA+AGG + Chr6:4880000-4880019 None:intergenic 25.0%
!! AAAGATTTTTACTGGTGAAA+AGG + Chr6:4877954-4877973 None:intergenic 25.0%
!! AACAACTACATTTTCTTTAG+TGG + Chr6:4879447-4879466 None:intergenic 25.0%
!! AAGATTTTTACTGGTGAAAA+GGG + Chr6:4877953-4877972 None:intergenic 25.0%
!! AATTGTTTTCCATGACATAT+TGG - Chr6:4879112-4879131 MsG0680030534.01.T01:CDS 25.0%
!! AGTTTGGAATGAAAAACTAA+GGG + Chr6:4880013-4880032 None:intergenic 25.0%
!! ATATTATTGTCTGATTTGTC+AGG - Chr6:4878583-4878602 MsG0680030534.01.T01:intron 25.0%
!! CATTTTCAATCTCTTTTAAG+AGG + Chr6:4878351-4878370 None:intergenic 25.0%
!! TTTATATTCTTTGTTTGTGC+AGG - Chr6:4879399-4879418 MsG0680030534.01.T01:CDS 25.0%
!!! ATTTTTTCTATCATCAGATC+GGG - Chr6:4879153-4879172 MsG0680030534.01.T01:CDS 25.0%
!!! CAATTGTTTTTCTGCATATT+TGG - Chr6:4876743-4876762 MsG0680030534.01.T01:intron 25.0%
!!! TAAAGGGTATTAAAACTTAC+CGG + Chr6:4878166-4878185 None:intergenic 25.0%
!!! TCTTTTTTCTCTACATCAAT+AGG + Chr6:4877499-4877518 None:intergenic 25.0%
!!! TTCCTTTTTTAATTTTGCAG+TGG - Chr6:4877087-4877106 MsG0680030534.01.T01:CDS 25.0%
!!! TTTTTAAAATCACGCATTCA+GGG + Chr6:4879855-4879874 None:intergenic 25.0%
!!! TTTTTTAAAATCACGCATTC+AGG + Chr6:4879856-4879875 None:intergenic 25.0%
AAAACTGTAGGTTAAAGTTG+CGG - Chr6:4878615-4878634 MsG0680030534.01.T01:intron 30.0%
AAATGTGGTTGAAAATCTGT+AGG + Chr6:4876345-4876364 None:intergenic 30.0%
AAGAAAGGCAGAAAATTCAA+GGG - Chr6:4878488-4878507 MsG0680030534.01.T01:CDS 30.0%
AATCTTCATTAGGATAACAC+AGG + Chr6:4877806-4877825 None:intergenic 30.0%
ATACATTGACCAATATGTCA+TGG + Chr6:4879124-4879143 None:intergenic 30.0%
ATCTATAAGAGAATTCAGCA+GGG + Chr6:4878729-4878748 None:intergenic 30.0%
ATGTATGAACATATCAATCG+AGG + Chr6:4877719-4877738 None:intergenic 30.0%
CGATATCTAATAAAACCAAG+AGG - Chr6:4876408-4876427 MsG0680030534.01.T01:CDS 30.0%
CGTTGAATATATGTGAAATG+TGG + Chr6:4876360-4876379 None:intergenic 30.0%
CTCCACTGCAAAATTAAAAA+AGG + Chr6:4877092-4877111 None:intergenic 30.0%
CTTCTATTTCAGAAGATTGA+AGG - Chr6:4878845-4878864 MsG0680030534.01.T01:CDS 30.0%
GAACAAATGATCATACATGT+TGG + Chr6:4879477-4879496 None:intergenic 30.0%
GAGAAAAAAGAAGACAGAAA+TGG - Chr6:4877508-4877527 MsG0680030534.01.T01:CDS 30.0%
GCTTCTTAGGCAATATAATT+TGG + Chr6:4880156-4880175 None:intergenic 30.0%
GGAAAACAATTAGCAACAAT+AGG + Chr6:4879103-4879122 None:intergenic 30.0%
GGTAACTATTTCGGTAAAAA+AGG - Chr6:4878007-4878026 MsG0680030534.01.T01:intron 30.0%
GTATCTTTCAATGCTTTCAA+AGG - Chr6:4879421-4879440 MsG0680030534.01.T01:CDS 30.0%
TAATTGGATTAACTGCAAAC+TGG + Chr6:4876613-4876632 None:intergenic 30.0%
TCTCAAATAATGCATTCTCA+AGG + Chr6:4880252-4880271 None:intergenic 30.0%
TCTGATTGCTATAAGTCTAA+AGG - Chr6:4878061-4878080 MsG0680030534.01.T01:CDS 30.0%
TGCACTCTATAACAAAGATT+TGG - Chr6:4878294-4878313 MsG0680030534.01.T01:CDS 30.0%
TTCTCTACATCAATAGGAAT+TGG + Chr6:4877493-4877512 None:intergenic 30.0%
TTTCATTTCTCATCCAATTG+CGG + Chr6:4876476-4876495 None:intergenic 30.0%
! AAAGATATTTGGACTGCTTT+TGG - Chr6:4878388-4878407 MsG0680030534.01.T01:CDS 30.0%
! AGCAGTCCAAATATCTTTTA+AGG + Chr6:4878386-4878405 None:intergenic 30.0%
! ATCATTCTCTTTAGTGTTGA+CGG + Chr6:4880224-4880243 None:intergenic 30.0%
! CAGTCCAAATATCTTTTAAG+GGG + Chr6:4878384-4878403 None:intergenic 30.0%
! CAGTTTGGAATGAAAAACTA+AGG + Chr6:4880014-4880033 None:intergenic 30.0%
! GCAGTCCAAATATCTTTTAA+GGG + Chr6:4878385-4878404 None:intergenic 30.0%
! TCTTTTGCCAATGCTTATTA+TGG - Chr6:4876835-4876854 MsG0680030534.01.T01:intron 30.0%
! TCTTTTTGCTCTACATCAAT+AGG + Chr6:4877637-4877656 None:intergenic 30.0%
!! AATGTCTTTTGCTTTTCCTT+TGG + Chr6:4879690-4879709 None:intergenic 30.0%
!! ACAATGTAGTTTTGCTTCTT+AGG + Chr6:4880169-4880188 None:intergenic 30.0%
!! ATCTCTTTTAAGAGGCATAA+AGG + Chr6:4878343-4878362 None:intergenic 30.0%
!! ATGTCTTTTGCTTTTCCTTT+GGG + Chr6:4879689-4879708 None:intergenic 30.0%
!! TATAACATAACTGTTTCTGG+TGG - Chr6:4876934-4876953 MsG0680030534.01.T01:intron 30.0%
!! TTAAGAAAAGTGTCAACTTC+AGG + Chr6:4877871-4877890 None:intergenic 30.0%
!!! CTTTTCTTTTTCAATCAGCT+CGG - Chr6:4880130-4880149 MsG0680030534.01.T01:CDS 30.0%
!!! TAATCATCCCCTTTTTTCTT+AGG + Chr6:4879236-4879255 None:intergenic 30.0%
AAATGCATACTGGACTTGAT+TGG - Chr6:4879873-4879892 MsG0680030534.01.T01:CDS 35.0%
AATTGGAACTTGGCTTATGA+CGG + Chr6:4877476-4877495 None:intergenic 35.0%
AGACGAGTTAAATCAGAAAC+CGG - Chr6:4880423-4880442 MsG0680030534.01.T01:CDS 35.0%
AGGAAAAGCAAAAGACATTC+TGG - Chr6:4879691-4879710 MsG0680030534.01.T01:intron 35.0%
AGTGGAGAATGATATGACAA+TGG - Chr6:4877105-4877124 MsG0680030534.01.T01:CDS 35.0%
ATGATAGAGGATCATCATTG+AGG + Chr6:4880347-4880366 None:intergenic 35.0%
ATGTGCTCCTAAGAAAAAAG+GGG - Chr6:4879226-4879245 MsG0680030534.01.T01:CDS 35.0%
ATTTATTGCATTCAACCCAC+TGG + Chr6:4878249-4878268 None:intergenic 35.0%
CAACAACAAAAGACGGAAAA+TGG - Chr6:4877249-4877268 MsG0680030534.01.T01:CDS 35.0%
CAAGTTTCAACCGTTATTTG+TGG - Chr6:4877022-4877041 MsG0680030534.01.T01:intron 35.0%
CAATTATGTGCATGTTGTTG+AGG + Chr6:4876973-4876992 None:intergenic 35.0%
CAGTTGGATTACATGCATTT+GGG + Chr6:4879933-4879952 None:intergenic 35.0%
CATCAATAGGAATTGGAACT+TGG + Chr6:4877486-4877505 None:intergenic 35.0%
CATGTGCTCCTAAGAAAAAA+GGG - Chr6:4879225-4879244 MsG0680030534.01.T01:CDS 35.0%
CGAGCTGATTGAAAAAGAAA+AGG + Chr6:4880132-4880151 None:intergenic 35.0%
CTCTATATGGTCACTAAGAA+CGG + Chr6:4878434-4878453 None:intergenic 35.0%
CTTGATTCAACTTGTGTTGA+TGG + Chr6:4880405-4880424 None:intergenic 35.0%
GAAGAAAGGCAGAAAATTCA+AGG - Chr6:4878487-4878506 MsG0680030534.01.T01:CDS 35.0%
GAAGAATAACCTAAAACCAC+AGG + Chr6:4878829-4878848 None:intergenic 35.0%
GAGATCATTGAAAAAGAGTG+CGG - Chr6:4879590-4879609 MsG0680030534.01.T01:CDS 35.0%
GAGCAAAAAGAAGACAGAAT+TGG - Chr6:4877646-4877665 MsG0680030534.01.T01:intron 35.0%
GATCATCATTGAGGAATACT+TGG + Chr6:4880338-4880357 None:intergenic 35.0%
GATCTATAAGAGAATTCAGC+AGG + Chr6:4878730-4878749 None:intergenic 35.0%
GATTGCTATAAGTCTAAAGG+CGG - Chr6:4878064-4878083 MsG0680030534.01.T01:CDS 35.0%
GGAAGAAAGATCAGATTACA+AGG + Chr6:4880111-4880130 None:intergenic 35.0%
GTGGAGAATGATATGACAAT+GGG - Chr6:4877106-4877125 MsG0680030534.01.T01:CDS 35.0%
GTTCTTTCATTGCACATAGT+TGG + Chr6:4877928-4877947 None:intergenic 35.0%
TAATGCAAGAGAGAGAAGAA+AGG - Chr6:4878473-4878492 MsG0680030534.01.T01:CDS 35.0%
TGACGTCTCTATTCAACATA+AGG - Chr6:4877282-4877301 MsG0680030534.01.T01:CDS 35.0%
TGAGAAAATTGCAACTGTTC+TGG - Chr6:4876637-4876656 MsG0680030534.01.T01:intron 35.0%
TGCTCTACATCAATAGGAAT+TGG + Chr6:4877631-4877650 None:intergenic 35.0%
TGTTCGTTTCTACTGAAACA+CGG - Chr6:4879492-4879511 MsG0680030534.01.T01:CDS 35.0%
TTCATTAGGATAACACAGGA+AGG + Chr6:4877802-4877821 None:intergenic 35.0%
TTTCTTCTCTCTCTTGCATT+AGG + Chr6:4878474-4878493 None:intergenic 35.0%
! ACAGAATTTCCTGTGGTTTT+AGG - Chr6:4878817-4878836 MsG0680030534.01.T01:CDS 35.0%
! ATCAGTGACTCTCGATTTTA+CGG - Chr6:4879804-4879823 MsG0680030534.01.T01:CDS 35.0%
! ATTACATGCATTTGGGACAT+TGG + Chr6:4879926-4879945 None:intergenic 35.0%
! GCAACTTTAACCTACAGTTT+TGG + Chr6:4878616-4878635 None:intergenic 35.0%
! TGTTTTTCTGCATATTTGGC+AGG - Chr6:4876747-4876766 MsG0680030534.01.T01:intron 35.0%
! TTTGGCGTCTTCTGATTTTT+CGG + Chr6:4879275-4879294 None:intergenic 35.0%
!! AAATTGCAACTGTTCTGGAA+TGG - Chr6:4876642-4876661 MsG0680030534.01.T01:intron 35.0%
!! AATATATACGCAGCGTTGAT+TGG + Chr6:4878930-4878949 None:intergenic 35.0%
!! ATATATACGCAGCGTTGATT+GGG + Chr6:4878929-4878948 None:intergenic 35.0%
!! ATGACTGTTATTTCTTCCAG+TGG - Chr6:4878230-4878249 MsG0680030534.01.T01:intron 35.0%
!! ATTTGTGTCTGCTGATTCAA+AGG - Chr6:4876670-4876689 MsG0680030534.01.T01:intron 35.0%
!! CATATTTGCTATGTATGTCC+AGG - Chr6:4878880-4878899 MsG0680030534.01.T01:CDS 35.0%
!! TCATTCTCTTTAGTGTTGAC+GGG + Chr6:4880223-4880242 None:intergenic 35.0%
!! TGACTGTTATTTCTTCCAGT+GGG - Chr6:4878231-4878250 MsG0680030534.01.T01:intron 35.0%
!!! GCACTCTTTTTCAATGATCT+CGG + Chr6:4879591-4879610 None:intergenic 35.0%
AAAAGACGGAAAATGGAGTC+TGG - Chr6:4877256-4877275 MsG0680030534.01.T01:CDS 40.0%
AGAATTGGAATCAACCAGGA+GGG - Chr6:4877661-4877680 MsG0680030534.01.T01:intron 40.0%
AGACAGAATTGGAATCAACC+AGG - Chr6:4877657-4877676 MsG0680030534.01.T01:intron 40.0%
AGAGGACATTCAAGACAGAA+CGG - Chr6:4877345-4877364 MsG0680030534.01.T01:CDS 40.0%
AGCAAAAGACATTCTGGTGA+TGG - Chr6:4879697-4879716 MsG0680030534.01.T01:intron 40.0%
ATATCCGTATCAGCACATGT+GGG + Chr6:4876910-4876929 None:intergenic 40.0%
ATTAGGATAACACAGGAAGG+TGG + Chr6:4877799-4877818 None:intergenic 40.0%
CAACTGGACATCTGTTTCAA+AGG - Chr6:4878099-4878118 MsG0680030534.01.T01:CDS 40.0%
CCAGATGTCAGGAAAATCAT+TGG + Chr6:4877149-4877168 None:intergenic 40.0%
CCATTCGAAGAAAGATTGGA+CGG + Chr6:4879900-4879919 None:intergenic 40.0%
CTGAATGCGTTAATACAGCT+GGG + Chr6:4879781-4879800 None:intergenic 40.0%
CTTAACACAGAGTACAACTG+CGG - Chr6:4877886-4877905 MsG0680030534.01.T01:CDS 40.0%
GAAAAATCAGAAGACGCCAA+AGG - Chr6:4879274-4879293 MsG0680030534.01.T01:CDS 40.0%
GACGGCATCATTTACTTGAT+CGG + Chr6:4877596-4877615 None:intergenic 40.0%
GCAGATGATCTTGAAAGACA+TGG - Chr6:4877385-4877404 MsG0680030534.01.T01:intron 40.0%
GCAGTTGGATTACATGCATT+TGG + Chr6:4879934-4879953 None:intergenic 40.0%
GCATGTGCTCCTAAGAAAAA+AGG - Chr6:4879224-4879243 MsG0680030534.01.T01:CDS 40.0%
GGCAAATGCATCAATCGAAA+TGG - Chr6:4877986-4878005 MsG0680030534.01.T01:intron 40.0%
GTGACCATTCGAAGAAAGAT+TGG + Chr6:4879904-4879923 None:intergenic 40.0%
TCATTGAGGAATACTTGGCA+TGG + Chr6:4880333-4880352 None:intergenic 40.0%
TCTATACAAGACCAGATGTC+AGG + Chr6:4877160-4877179 None:intergenic 40.0%
TCTGAAAAAGCAATCTGTGC+AGG - Chr6:4877765-4877784 MsG0680030534.01.T01:CDS 40.0%
TGACTGTGAAGAAGCAGTTT+CGG - Chr6:4878680-4878699 MsG0680030534.01.T01:CDS 40.0%
TTCCGTAGCTTATCATCCTT+TGG + Chr6:4879293-4879312 None:intergenic 40.0%
! AAAATCTTTTGCGCACGTTG+TGG - Chr6:4877965-4877984 MsG0680030534.01.T01:intron 40.0%
! AAGTAGATCTTTAAAGGCCG+TGG - Chr6:4879649-4879668 MsG0680030534.01.T01:CDS 40.0%
! AGACAGAAATGGATTCAACC+AGG - Chr6:4877519-4877538 MsG0680030534.01.T01:CDS 40.0%
! AGTAGATCTTTAAAGGCCGT+GGG - Chr6:4879650-4879669 MsG0680030534.01.T01:CDS 40.0%
! ATCATTGAAAAAGAGTGCGG+AGG - Chr6:4879593-4879612 MsG0680030534.01.T01:CDS 40.0%
! CCAATGATTTTCCTGACATC+TGG - Chr6:4877146-4877165 MsG0680030534.01.T01:CDS 40.0%
! CGTGCGCAAAAGATTTTTAC+TGG + Chr6:4877962-4877981 None:intergenic 40.0%
! TGATGATGATGCTGATGAAG+AGG - Chr6:4877327-4877346 MsG0680030534.01.T01:CDS 40.0%
! TGGTCACTAAGAACGGTTTT+CGG + Chr6:4878427-4878446 None:intergenic 40.0%
!! AACATAACTGTTTCTGGTGG+TGG - Chr6:4876937-4876956 MsG0680030534.01.T01:intron 40.0%
!! AGACATTCTGGTGATGGAAA+AGG - Chr6:4879703-4879722 MsG0680030534.01.T01:intron 40.0%
!! CATTCTCTTTAGTGTTGACG+GGG + Chr6:4880222-4880241 None:intergenic 40.0%
!! TCTTTTGCTTTTCCTTTGGG+AGG + Chr6:4879686-4879705 None:intergenic 40.0%
AAGACGAGCTGTTGTTACCT+TGG + Chr6:4879522-4879541 None:intergenic 45.0%
AAGTGATACACAGCCGCAAT+TGG - Chr6:4876460-4876479 MsG0680030534.01.T01:CDS 45.0%
ACACACACATGCGCATACAT+AGG + Chr6:4879344-4879363 None:intergenic 45.0%
AGCACATGTGGGGATTGATT+TGG + Chr6:4876899-4876918 None:intergenic 45.0%
AGGATGATAAGCTACGGAAG+TGG - Chr6:4879294-4879313 MsG0680030534.01.T01:CDS 45.0%
AGGCATGACTCCAAAACTGT+AGG - Chr6:4878603-4878622 MsG0680030534.01.T01:intron 45.0%
AGGGAACGAAAATCTTGACG+AGG - Chr6:4878507-4878526 MsG0680030534.01.T01:CDS 45.0%
ATAGGGAGGGGAAAAAAGAG+AGG + Chr6:4879326-4879345 None:intergenic 45.0%
CACACACATGCGCATACATA+GGG + Chr6:4879343-4879362 None:intergenic 45.0%
CAGAATTGGAATCAACCAGG+AGG - Chr6:4877660-4877679 MsG0680030534.01.T01:intron 45.0%
CAGCAGTCTCCATCAAAGTA+CGG + Chr6:4879545-4879564 None:intergenic 45.0%
CATATCCGTATCAGCACATG+TGG + Chr6:4876911-4876930 None:intergenic 45.0%
CCAGCTGTATTAACGCATTC+AGG - Chr6:4879779-4879798 MsG0680030534.01.T01:intron 45.0%
CCGTCCAATCTTTCTTCGAA+TGG - Chr6:4879897-4879916 MsG0680030534.01.T01:CDS 45.0%
CCTGAATGCGTTAATACAGC+TGG + Chr6:4879782-4879801 None:intergenic 45.0%
CGCCAAAGGATGATAAGCTA+CGG - Chr6:4879288-4879307 MsG0680030534.01.T01:CDS 45.0%
CTCGTTTCTTACAGAAGCCA+AGG + Chr6:4879181-4879200 None:intergenic 45.0%
CTGCACGCCATAATAAGCAT+TGG + Chr6:4876845-4876864 None:intergenic 45.0%
CTTGGCTTCTGTAAGAAACG+AGG - Chr6:4879179-4879198 MsG0680030534.01.T01:CDS 45.0%
GAATTGGAATCAACCAGGAG+GGG - Chr6:4877662-4877681 MsG0680030534.01.T01:intron 45.0%
GACTGTGAAGAAGCAGTTTC+GGG - Chr6:4878681-4878700 MsG0680030534.01.T01:CDS 45.0%
GCTATGTATGTCCAGGAGTT+TGG - Chr6:4878887-4878906 MsG0680030534.01.T01:intron 45.0%
GGAGACATTGAATCAACGTG+TGG - Chr6:4876786-4876805 MsG0680030534.01.T01:intron 45.0%
GTTAAATCAGAAACCGGTGC+TGG - Chr6:4880429-4880448 MsG0680030534.01.T01:CDS 45.0%
TAGGGAGGGGAAAAAAGAGA+GGG + Chr6:4879325-4879344 None:intergenic 45.0%
TATCATCAGATCGGGTACCT+TGG - Chr6:4879161-4879180 MsG0680030534.01.T01:CDS 45.0%
TATCCGTATCAGCACATGTG+GGG + Chr6:4876909-4876928 None:intergenic 45.0%
TCAGAGCAAAAGCAACACTC+TGG + Chr6:4878046-4878065 None:intergenic 45.0%
TTGAGGAATACTTGGCATGG+CGG + Chr6:4880330-4880349 None:intergenic 45.0%
! AATCCCCACATGTGCTGATA+CGG - Chr6:4876903-4876922 MsG0680030534.01.T01:intron 45.0%
! GCACATGTGGGGATTGATTT+GGG + Chr6:4876898-4876917 None:intergenic 45.0%
! GCAGGAAGCATATATGAACC+TGG - Chr6:4876765-4876784 MsG0680030534.01.T01:intron 45.0%
!! AGATTTGGCTCTACTGCAGT+TGG + Chr6:4879949-4879968 None:intergenic 45.0%
!! CACGTTGATTCAATGTCTCC+AGG + Chr6:4876786-4876805 None:intergenic 45.0%
!! GCGTCTTCTGATTTTTCGGA+TGG + Chr6:4879271-4879290 None:intergenic 45.0%
!! TTGCAACTGTTCTGGAATGG+AGG - Chr6:4876645-4876664 MsG0680030534.01.T01:intron 45.0%
AACGGTATTTCGCCAGGAAG+GGG - Chr6:4877363-4877382 MsG0680030534.01.T01:intron 50.0%
AAGACGATCACGCCAGTTTG+TGG + Chr6:4876439-4876458 None:intergenic 50.0%
ACACATGCGCATACATAGGG+AGG + Chr6:4879340-4879359 None:intergenic 50.0%
ACATGCGCATACATAGGGAG+GGG + Chr6:4879338-4879357 None:intergenic 50.0%
AGAACGGTATTTCGCCAGGA+AGG - Chr6:4877361-4877380 MsG0680030534.01.T01:intron 50.0%
AGACAGAACGGTATTTCGCC+AGG - Chr6:4877357-4877376 MsG0680030534.01.T01:intron 50.0%
AGCACACTTGCAGTTCTCTG+TGG - Chr6:4880189-4880208 MsG0680030534.01.T01:intron 50.0%
CAAGAGGGTTCTCCACAAAC+TGG - Chr6:4876424-4876443 MsG0680030534.01.T01:CDS 50.0%
CACATGCGCATACATAGGGA+GGG + Chr6:4879339-4879358 None:intergenic 50.0%
CAGTTTGTGGAGAACCCTCT+TGG + Chr6:4876426-4876445 None:intergenic 50.0%
CCTCGAAGACAGACTACAAG+CGG - Chr6:4878980-4878999 MsG0680030534.01.T01:intron 50.0%
CGTACTTTGATGGAGACTGC+TGG - Chr6:4879543-4879562 MsG0680030534.01.T01:CDS 50.0%
GAACGGTATTTCGCCAGGAA+GGG - Chr6:4877362-4877381 MsG0680030534.01.T01:intron 50.0%
GATCGGCATCTATCTTCTCC+TGG + Chr6:4877540-4877559 None:intergenic 50.0%
GATCTCGGCATGATCCATAG+CGG + Chr6:4879576-4879595 None:intergenic 50.0%
GCGGACACATCACATTCAAC+TGG - Chr6:4878083-4878102 MsG0680030534.01.T01:CDS 50.0%
GCTCGTCTTCCGTACTTTGA+TGG - Chr6:4879533-4879552 MsG0680030534.01.T01:CDS 50.0%
GGATACGTCAATCCTCCCAA+AGG - Chr6:4879671-4879690 MsG0680030534.01.T01:intron 50.0%
GTATGTCCAGGAGTTTGGCT+CGG - Chr6:4878892-4878911 MsG0680030534.01.T01:intron 50.0%
GTTTCGGGACATCATTCCAG+AGG - Chr6:4878696-4878715 MsG0680030534.01.T01:CDS 50.0%
TACTGAAACACGGCACTCCA+AGG - Chr6:4879502-4879521 MsG0680030534.01.T01:CDS 50.0%
TCAGCAGGGTAATTCTCCTC+TGG + Chr6:4878715-4878734 None:intergenic 50.0%
! CACTAAGAACGGTTTTCGGC+AGG + Chr6:4878423-4878442 None:intergenic 50.0%
!! GGGATTGATTTGGGCAAAGG+AGG + Chr6:4876889-4876908 None:intergenic 50.0%
!! GTGGGGATTGATTTGGGCAA+AGG + Chr6:4876892-4876911 None:intergenic 50.0%
!! TTGGACTGCTTTTGGCGCTA+AGG - Chr6:4878396-4878415 MsG0680030534.01.T01:CDS 50.0%
CAAGATCATCTGCCCCTTCC+TGG + Chr6:4877378-4877397 None:intergenic 55.0%
CACATTCCGAGCCAAACTCC+TGG + Chr6:4878901-4878920 None:intergenic 55.0%
CCGCTTGTAGTCTGTCTTCG+AGG + Chr6:4878983-4879002 None:intergenic 55.0%
GGGAGGATTGACGTATCCCA+CGG + Chr6:4879669-4879688 None:intergenic 55.0%
GTGGCAGCTGAACTGGATGA+TGG - Chr6:4876805-4876824 MsG0680030534.01.T01:intron 55.0%
TCAACGTGTGGCAGCTGAAC+TGG - Chr6:4876798-4876817 MsG0680030534.01.T01:intron 55.0%
! AAAGAGTGCGGAGGCGACTA+TGG - Chr6:4879602-4879621 MsG0680030534.01.T01:CDS 55.0%
!! CAGGAGTTTGGCTCGGAATG+TGG - Chr6:4878899-4878918 MsG0680030534.01.T01:intron 55.0%
GATCAGCATCTGTCCCCTCC+TGG + Chr6:4877678-4877697 None:intergenic 60.0%
GGCAGCTCGTGCGCAACAGA+AGG + Chr6:4876868-4876887 None:intergenic 65.0%
! CTGCTGGTCTGCTGCCGCTA+TGG - Chr6:4879559-4879578 MsG0680030534.01.T01:CDS 65.0%
Chromosome Type Strat End Strand Name
Chr6 gene 4876333 4880462 4876333 ID=MsG0680030534.01;Name=MsG0680030534.01
Chr6 mRNA 4876333 4880462 4876333 ID=MsG0680030534.01.T01;Parent=MsG0680030534.01;Name=MsG0680030534.01.T01;_AED=0.09;_eAED=0.09;_QI=0|0|0|1|1|1|11|0|934
Chr6 exon 4880299 4880462 4880299 ID=MsG0680030534.01.T01:exon:12174;Parent=MsG0680030534.01.T01
Chr6 exon 4880104 4880197 4880104 ID=MsG0680030534.01.T01:exon:12175;Parent=MsG0680030534.01.T01
Chr6 exon 4879804 4880026 4879804 ID=MsG0680030534.01.T01:exon:12176;Parent=MsG0680030534.01.T01
Chr6 exon 4879009 4879688 4879009 ID=MsG0680030534.01.T01:exon:12177;Parent=MsG0680030534.01.T01
Chr6 exon 4878630 4878899 4878630 ID=MsG0680030534.01.T01:exon:12178;Parent=MsG0680030534.01.T01
Chr6 exon 4878267 4878545 4878267 ID=MsG0680030534.01.T01:exon:12179;Parent=MsG0680030534.01.T01
Chr6 exon 4878042 4878170 4878042 ID=MsG0680030534.01.T01:exon:12180;Parent=MsG0680030534.01.T01
Chr6 exon 4877756 4877956 4877756 ID=MsG0680030534.01.T01:exon:12181;Parent=MsG0680030534.01.T01
Chr6 exon 4877480 4877625 4877480 ID=MsG0680030534.01.T01:exon:12182;Parent=MsG0680030534.01.T01
Chr6 exon 4877071 4877374 4877071 ID=MsG0680030534.01.T01:exon:12183;Parent=MsG0680030534.01.T01
Chr6 exon 4876333 4876647 4876333 ID=MsG0680030534.01.T01:exon:12184;Parent=MsG0680030534.01.T01
Chr6 CDS 4880299 4880462 4880299 ID=MsG0680030534.01.T01:cds;Parent=MsG0680030534.01.T01
Chr6 CDS 4880104 4880197 4880104 ID=MsG0680030534.01.T01:cds;Parent=MsG0680030534.01.T01
Chr6 CDS 4879804 4880026 4879804 ID=MsG0680030534.01.T01:cds;Parent=MsG0680030534.01.T01
Chr6 CDS 4879009 4879688 4879009 ID=MsG0680030534.01.T01:cds;Parent=MsG0680030534.01.T01
Chr6 CDS 4878630 4878899 4878630 ID=MsG0680030534.01.T01:cds;Parent=MsG0680030534.01.T01
Chr6 CDS 4878267 4878545 4878267 ID=MsG0680030534.01.T01:cds;Parent=MsG0680030534.01.T01
Chr6 CDS 4878042 4878170 4878042 ID=MsG0680030534.01.T01:cds;Parent=MsG0680030534.01.T01
Chr6 CDS 4877756 4877956 4877756 ID=MsG0680030534.01.T01:cds;Parent=MsG0680030534.01.T01
Chr6 CDS 4877480 4877625 4877480 ID=MsG0680030534.01.T01:cds;Parent=MsG0680030534.01.T01
Chr6 CDS 4877071 4877374 4877071 ID=MsG0680030534.01.T01:cds;Parent=MsG0680030534.01.T01
Chr6 CDS 4876333 4876647 4876333 ID=MsG0680030534.01.T01:cds;Parent=MsG0680030534.01.T01
Gene Sequence

>MsG0680030534.01.T01

ATGCAAATACCTACAGATTTTCAACCACATTTCACATATATTCAACGGAAGAGAGCATTTGATGAATTAAGCAATCGATATCTAATAAAACCAAGAGGGTTCTCCACAAACTGGCGTGATCGTCTTCAAGTGATACACAGCCGCAATTGGATGAGAAATGAAATTTCAAAATTGATCCAGTTTGCAGTTAATCCAATTAATAATGAGAAAATTGCAACTGTTCTGGAATGGAGGCTATTTGTGTCTGCTGATTCAAAGGAAGCATATATGAACCTGGAGACATTGAATCAACGTGTGGCAGCTGAACTGGATGATGGTGCAATCTCTTTTGCCAATGCTTATTATGGCGTGCAGCCTTCTGTTGCGCACGAGCTGCCTCCTTTGCCCAAATCAATCCCCACATGTGCTGATACGGATATGCTTTATAACATAACTGTTTCTGGTGGTGGAAACTATGTTCCTCAACAACATGCACATAATTTGGAGAATGATATGACAATGGGAAAACCTGAAGAATTTTCCAATGATTTTCCTGACATCTGGTCTTGTATAGACTTCTGTGATTTCTTCAGTGAATGTGAATCACAGAAATTAGATATTCAGGATAATCTTGCTCATGATATCAACAACAAAAGACGGAAAATGGAGTCTGGCTGTGACGTCTCTATTCAACATAAGGATGTTATTATTATTGACGATGATGATGATGATGCTGATGAAGAGGACATTCAAGACAGAACGGTATTTCGCCAGGAAGGGGCAGATGATCTTGAAAGACATGGCATGACAGACAAAACTAATCATAATTCAATGGAAATTGACATTGGAGCGAATGACAATATGCATGCCGTCATAAGCCAAGTTCCAATTCCTATTGATGTAGAGAAAAAAGAAGACAGAAATGGATTCAACCAGGAGAAGATAGATGCCGATCAAGTAAATGAACTGATAATCAAGAAGATTGATGCCGATCAAGTAAATGATGCCGTCATAAGCCAAGTTCCAATTCCTATTGATGTAGAGCAAAAAGAAGACAGAATTGGAATCAACCAGGAGGGGACAGATGCTGATCAAGTAAATGATGCTGTTTCCTCGATTGATATGTTCATACATGATCAAATAGAAGAACATATTAGAAGTCTGAAAAAGCAATCTGTGCAGAGTACAACTGCGGTCGACAACGACACATGCCAACTATGTGCAATGAAAGAACTTCCCTTTTCACCAGTAAAAATCTTTTGCGCACGTTGTGGCAAATGCATCAATCGAAATGGTAACTATTTCGGTAAAAAAGGAGAAGAATTTGATCCAGAGTGTTGCTTTTGCTCTGATTGCTATAAGTCTAAAGGCGGACACATCACATTCAACTGGACATCTGTTTCAAAGGAACTTCTTGAACGAAAGACAAATGATGAAGTAATTAATGAACCGTGGGTTGAATGCAATAAATGCAAAAGATGGCAGCATCAAATATGTGCACTCTATAACAAAGATTTGGACTGCAATTCTGTGTATACATGTCCTTTATGCCTCTTAAAAGAGATTGAAAATGGAATGCAAATCCCCTTAAAAGATATTTGGACTGCTTTTGGCGCTAAGGACCTGCCGAAAACCGTTCTTAGTGACCATATAGAGAAAAGAATTTTTGAGCGCCTAATGCAAGAGAGAGAAGAAAGGCAGAAAATTCAAGGGAACGAAAATCTTGACGAGGTTAAAGTTGCGGAAAGTCTCACTGTTAGAGAAGTGATATCTGTTGACAAACAACTGACTGTGAAGAAGCAGTTTCGGGACATCATTCCAGAGGAGAATTACCCTGCTGAATTCTCTTATAGATCAAGAGTTATTCTTCTATTTCAGAAGATTGAAGGAGCAGATGTATGCATATTTGCTATGTATGTCCAGGAGTTTGGCTCGGAATGTGGCAATCCCAATCAACGCTGCGTATATATTTCATATCTCGATTCTGTCAATCATTTTACACCTCGAAGACAGACTACAAGCGGAGAAGCACTTCGTACATTTGTTTACCATGAGATATTGATCGGGTACCTTGGCTTCTGTAAGAAACGAGGTTTTGCAACTTGCTACATTCATGCATGTGCTCCTAAGAAAAAAGGGGATGATTACATTCTAAATTGCCATCCGAAAAATCAGAAGACGCCAAAGGATGATAAGCTACGGAAGTGGTATCTTTCAATGCTTTCAAAGGCCACTAAAGAAAATGTAGTTGTTGGTTTAACCAACATGTATGATCATTTGTTCGTTTCTACTGAAACACGGCACTCCAAGGTAACAACAGCTCGTCTTCCGTACTTTGATGGAGACTGCTGGTCTGCTGCCGCTATGGATCATGCCGAGATCATTGAAAAAGAGTGCGGAGGCGACTATGGAAATGCATTGAAGAAAGCACTGAAAAGTAGATCTTTAAAGGCCGTGGGATACGTCAATCCTCCCAAAGGAAAAGCAAAAGACATTCTGGTGATGGAAAAGCTCGGCCAAATTATATTGCCTAAGAAGCAAAACTACATTGTAGCACACTTGCAGTTCTCTGTGGATGATATCCCCGTCAACACTAAAGAGAATGATATCATCCTTGAGAATGCATTATTTGAGAATAGAATTAACTTTCTGAGCTTCTGCCAAAAGAATTATTTTCAGTTTGACACACTCCGCCATGCCAAGTATTCCTCAATGATGATCCTCTATCATCTAAAGAATACTATTCTGAAGAGAGATGCTGATTGCCATCAACACAAGTTGAATCAAGACGAGTTAAATCAGAAACCGGTGCTGGTAAGAACATAG
Protein sequence

>MsG0680030534.01.T01

MQIPTDFQPHFTYIQRKRAFDELSNRYLIKPRGFSTNWRDRLQVIHSRNWMRNEISKLIQFAVNPINNEKIATVLEWRLFVSADSKEAYMNLETLNQRVAAELDDGAISFANAYYGVQPSVAHELPPLPKSIPTCADTDMLYNITVSGGGNYVPQQHAHNLENDMTMGKPEEFSNDFPDIWSCIDFCDFFSECESQKLDIQDNLAHDINNKRRKMESGCDVSIQHKDVIIIDDDDDDADEEDIQDRTVFRQEGADDLERHGMTDKTNHNSMEIDIGANDNMHAVISQVPIPIDVEKKEDRNGFNQEKIDADQVNELIIKKIDADQVNDAVISQVPIPIDVEQKEDRIGINQEGTDADQVNDAVSSIDMFIHDQIEEHIRSLKKQSVQSTTAVDNDTCQLCAMKELPFSPVKIFCARCGKCINRNGNYFGKKGEEFDPECCFCSDCYKSKGGHITFNWTSVSKELLERKTNDEVINEPWVECNKCKRWQHQICALYNKDLDCNSVYTCPLCLLKEIENGMQIPLKDIWTAFGAKDLPKTVLSDHIEKRIFERLMQEREERQKIQGNENLDEVKVAESLTVREVISVDKQLTVKKQFRDIIPEENYPAEFSYRSRVILLFQKIEGADVCIFAMYVQEFGSECGNPNQRCVYISYLDSVNHFTPRRQTTSGEALRTFVYHEILIGYLGFCKKRGFATCYIHACAPKKKGDDYILNCHPKNQKTPKDDKLRKWYLSMLSKATKENVVVGLTNMYDHLFVSTETRHSKVTTARLPYFDGDCWSAAAMDHAEIIEKECGGDYGNALKKALKSRSLKAVGYVNPPKGKAKDILVMEKLGQIILPKKQNYIVAHLQFSVDDIPVNTKENDIILENALFENRINFLSFCQKNYFQFDTLRHAKYSSMMILYHLKNTILKRDADCHQHKLNQDELNQKPVLVRT*