AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0680031170.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0680031170.01.T01 MTR_6g017035 83.051 59 10 0 39 97 316 374 2.27e-26 105
MsG0680031170.01.T01 MTR_6g017035 92.105 38 3 0 1 38 106 143 2.14e-17 80.1
MsG0680031170.01.T02 MTR_8g463110 32.099 81 48 1 1 74 298 378 2.22e-11 57.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 49 sgRNAs with CRISPR-Local

Find 392 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTCCCGAGGGAAAATGTATT+TGG 0.271291 6:-15544261 MsG0680031170.01.T01:CDS
AACAAACACCTATCTTATTT+CGG 0.317704 6:+15542173 None:intergenic
TAAGCATGGTCAAATTGATT+TGG 0.323547 6:-15546959 MsG0680031170.01.T01:intron
AAAGAGATGGAGAGACTTAG+AGG 0.343972 6:-15542235 MsG0680031170.01.T01:CDS
AAAGAGGCATAATAACATTA+TGG 0.351276 6:-15542072 MsG0680031170.01.T02:CDS
TTTGTTGGCACAACGGTCTA+AGG 0.373605 6:-15542156 MsG0680031170.01.T02:CDS
ACATGCAATATTACTCTTCA+AGG 0.387451 6:+15544181 None:intergenic
ATGGCAAAGTTGTAGGAGGA+TGG 0.430279 6:-15542371 MsG0680031170.01.T01:CDS
GAAATAAGATAGGTGTTTGT+TGG 0.432163 6:-15542171 MsG0680031170.01.T02:intron
GACTTTGATGGCAAAGTTGT+AGG 0.432449 6:-15542378 MsG0680031170.01.T01:CDS
TGTTGTGTTGTTGATAATTG+TGG 0.445781 6:-15547490 MsG0680031170.01.T01:intron
GCACAGAGGCGATGAATGAA+TGG 0.450700 6:-15542305 MsG0680031170.01.T01:CDS
TATTGATAAAATGAGTTTGA+AGG 0.450736 6:-15546926 MsG0680031170.01.T01:CDS
AAGAGATGGAGAGACTTAGA+GGG 0.451265 6:-15542234 MsG0680031170.01.T01:CDS
GAGGAAGTCCGAAATAAGAT+AGG 0.481180 6:-15542181 MsG0680031170.01.T02:intron
CACAGAGGCGATGAATGAAT+GGG 0.483367 6:-15542304 MsG0680031170.01.T01:CDS
TCTCTTTCTACACTCTTCAA+TGG 0.483984 6:+15542251 None:intergenic
ATGGCATTGAAGACGGATGA+AGG 0.484839 6:-15542053 MsG0680031170.01.T02:CDS
AACAACACAACAACCATCTC+AGG 0.487556 6:+15547501 None:intergenic
CACAACGGTCTAAGGTGTAT+TGG 0.488639 6:-15542148 MsG0680031170.01.T02:CDS
TTCGCAAGTGGCAAGATATG+AGG 0.505630 6:-15542200 MsG0680031170.01.T01:CDS
ATTGATAAAATGAGTTTGAA+GGG 0.510791 6:-15546925 MsG0680031170.01.T01:CDS
GCTTTGTTGTGATCCTGAGA+TGG 0.538416 6:-15547514 MsG0680031170.01.T01:CDS
TGGCAAAGTTGTAGGAGGAT+GGG 0.540914 6:-15542370 MsG0680031170.01.T01:CDS
ATGGCTCAGCAAGATATTTG+TGG 0.541044 6:-15542020 MsG0680031170.01.T02:CDS
TGGAAGATAGATGACTTTGA+TGG 0.545589 6:-15542390 MsG0680031170.01.T01:intron
TCAGGATCACAACAAAGCTC+AGG 0.551099 6:+15547519 None:intergenic
TTGAAGAGTGTAGAAAGAGA+TGG 0.565305 6:-15542248 MsG0680031170.01.T01:CDS
TGGCATTGAAGACGGATGAA+GGG 0.568675 6:-15542052 MsG0680031170.01.T02:CDS
GTTGTAGGAGGATGGGAGAG+AGG 0.574850 6:-15542363 MsG0680031170.01.T01:CDS
CAGAACTGCTTTCTGCAAAG+AGG 0.576441 6:-15544216 MsG0680031170.01.T01:CDS
CGATGAAGCGCATGAGTATG+TGG 0.579860 6:-15546839 MsG0680031170.01.T01:CDS
GAGTATGTGGTTGATTGTGC+TGG 0.581386 6:-15546826 MsG0680031170.01.T01:intron
GGCATTGAAGACGGATGAAG+GGG 0.585815 6:-15542051 MsG0680031170.01.T02:CDS
GGATGAAGGGGAAACAGTCA+TGG 0.586223 6:-15542039 MsG0680031170.01.T02:CDS
TAACATTATGGCATTGAAGA+CGG 0.600881 6:-15542060 MsG0680031170.01.T02:CDS
ATGAATGGGGTCGTAAGTTG+CGG 0.617047 6:-15542290 MsG0680031170.01.T01:CDS
TAAGGTGTATTGGCTCAAAG+AGG 0.618637 6:-15542138 MsG0680031170.01.T02:CDS
GGATGGGAGAGAGGTCAACA+TGG 0.620885 6:-15542354 MsG0680031170.01.T01:CDS
GCAGCATGAGTTAAACTACA+TGG 0.626584 6:+15546895 None:intergenic
AAGGTGTATTGGCTCAAAGA+GGG 0.631958 6:-15542137 MsG0680031170.01.T02:CDS
GAGTGTGCAGAGTTCGCAAG+TGG 0.650527 6:-15542212 MsG0680031170.01.T01:CDS
TTTGATGGCAAAGTTGTAGG+AGG 0.661653 6:-15542375 MsG0680031170.01.T01:CDS
CTGCAGTGTACATGTCCCGA+GGG 0.667218 6:-15544274 MsG0680031170.01.T01:CDS
ATGTAGTTTAACTCATGCTG+CGG 0.670997 6:-15546893 MsG0680031170.01.T01:CDS
ACTGCAGTGTACATGTCCCG+AGG 0.679392 6:-15544275 MsG0680031170.01.T01:CDS
ATAGGTGTTTGTTGGCACAA+CGG 0.685812 6:-15542163 MsG0680031170.01.T02:intron
ACAGAGGCGATGAATGAATG+GGG 0.713642 6:-15542303 MsG0680031170.01.T01:CDS
ACGATTAGAGAAATGCACAG+AGG 0.804683 6:-15542319 MsG0680031170.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATATCATTACAATAAAATGA+AGG + Chr6:15546650-15546669 None:intergenic 15.0%
!!! ATTTTACTTATTATGCTTAT+TGG + Chr6:15543593-15543612 None:intergenic 15.0%
!!! ATTTTTTTGCTTTTTTTTAG+AGG - Chr6:15546410-15546429 MsG0680031170.01.T01:intron 15.0%
!!! TTAACCATTTTATTATTTTC+AGG + Chr6:15543481-15543500 None:intergenic 15.0%
!!! TTTTGAAAAAGATAAATTGT+TGG - Chr6:15546032-15546051 MsG0680031170.01.T01:intron 15.0%
!! AAAAAAACTAGATTTGTCTT+TGG - Chr6:15542950-15542969 MsG0680031170.01.T01:intron 20.0%
!! AATAATAAAATGGTTAAGCT+TGG - Chr6:15543484-15543503 MsG0680031170.01.T01:intron 20.0%
!! AATTAAATATTACCATGTTC+CGG - Chr6:15546155-15546174 MsG0680031170.01.T01:intron 20.0%
!! ACTATAAAAGTAAATTGGTT+TGG + Chr6:15545580-15545599 None:intergenic 20.0%
!! ATTAGTTGTTTATTCAAGAT+TGG - Chr6:15542512-15542531 MsG0680031170.01.T01:intron 20.0%
!! ATTGATAAAATGAGTTTGAA+GGG - Chr6:15542664-15542683 MsG0680031170.01.T01:intron 20.0%
!! CCAAAACTATAAAAGTAAAT+TGG + Chr6:15545585-15545604 None:intergenic 20.0%
!! GGATATTACAATTATAAACT+TGG + Chr6:15546365-15546384 None:intergenic 20.0%
!! GTTTCCTGAAAATAATAAAA+TGG - Chr6:15543474-15543493 MsG0680031170.01.T01:intron 20.0%
!! TATTGATAAAATGAGTTTGA+AGG - Chr6:15542663-15542682 MsG0680031170.01.T01:intron 20.0%
!! TCAAAACAATTAGCATTAAA+TGG + Chr6:15543933-15543952 None:intergenic 20.0%
!! TCTTATCTATCTATATTATG+AGG - Chr6:15546080-15546099 MsG0680031170.01.T01:intron 20.0%
!! TTAAGATAAAAAAATGGTGA+AGG + Chr6:15545733-15545752 None:intergenic 20.0%
!!! AATGCTAATTGTTTTGATTT+AGG - Chr6:15543936-15543955 MsG0680031170.01.T01:intron 20.0%
!!! ATAGAGATTTTCTTTAGAAT+TGG + Chr6:15544157-15544176 None:intergenic 20.0%
!!! ATCGTTATAACTTTTTATTG+AGG - Chr6:15542391-15542410 MsG0680031170.01.T01:intron 20.0%
!!! ATGCTAATTGTTTTGATTTA+GGG - Chr6:15543937-15543956 MsG0680031170.01.T01:intron 20.0%
!!! ATTTTCTTTAGAATTGGTAA+GGG + Chr6:15544151-15544170 None:intergenic 20.0%
!!! CCAATTTACTTTTATAGTTT+TGG - Chr6:15545582-15545601 MsG0680031170.01.T01:intron 20.0%
! AAAAAAACTAGTAGTGTTCA+TGG + Chr6:15545696-15545715 None:intergenic 25.0%
! AAATTGTTGATGTGTTAATG+AGG - Chr6:15542258-15542277 MsG0680031170.01.T01:CDS 25.0%
! ACATGAATATATCAGTAGTA+AGG + Chr6:15545204-15545223 None:intergenic 25.0%
! ACTGCAATTTAGACTTAATT+TGG + Chr6:15547058-15547077 None:intergenic 25.0%
! ACTTAATACAGTCTTAGATA+AGG - Chr6:15544772-15544791 MsG0680031170.01.T01:intron 25.0%
! ATATTTGTACTTTCCATTTG+TGG - Chr6:15543861-15543880 MsG0680031170.01.T01:intron 25.0%
! ATTAAATTGGAGGTTATATG+AGG + Chr6:15546681-15546700 None:intergenic 25.0%
! ATTAGCATTAAATGGTTTGA+TGG + Chr6:15543925-15543944 None:intergenic 25.0%
! CTTAATACAGTCTTAGATAA+GGG - Chr6:15544773-15544792 MsG0680031170.01.T01:intron 25.0%
! GAAGGTTGTTAGAATTAAAT+TGG + Chr6:15546694-15546713 None:intergenic 25.0%
! GAATGATTTAATTGCAAATG+AGG - Chr6:15543313-15543332 MsG0680031170.01.T01:intron 25.0%
! GATTCGTTTCTAAATCAAAT+TGG + Chr6:15543997-15544016 None:intergenic 25.0%
! TACATACACATTTAAATACG+TGG - Chr6:15544061-15544080 MsG0680031170.01.T01:intron 25.0%
! TATTTGTACTTTCCATTTGT+GGG - Chr6:15543862-15543881 MsG0680031170.01.T01:intron 25.0%
! TCATATACAACCGAATAATT+AGG + Chr6:15542907-15542926 None:intergenic 25.0%
! TCTTTAATATTCACTTGCAT+TGG - Chr6:15544207-15544226 MsG0680031170.01.T01:CDS 25.0%
! TGAAAATAATGCATGTAGAT+GGG - Chr6:15543385-15543404 MsG0680031170.01.T01:intron 25.0%
! TGAAATACAATAAATCTCTC+AGG + Chr6:15546386-15546405 None:intergenic 25.0%
! TTAATACAGTCTTAGATAAG+GGG - Chr6:15544774-15544793 MsG0680031170.01.T01:intron 25.0%
! TTGAAAATAATGCATGTAGA+TGG - Chr6:15543384-15543403 MsG0680031170.01.T01:intron 25.0%
! TTGAGTTTCCTCATAATATA+GGG + Chr6:15545948-15545967 None:intergenic 25.0%
!! AAAGAGGCATAATAACATTA+TGG - Chr6:15547517-15547536 MsG0680031170.01.T01:CDS 25.0%
!! AACAAACACCTATCTTATTT+CGG + Chr6:15547419-15547438 None:intergenic 25.0%
!! AGATGCACAATTTTTATGTT+CGG + Chr6:15543658-15543677 None:intergenic 25.0%
!! ATAAAAGTACAAACGAAACA+AGG + Chr6:15543811-15543830 None:intergenic 25.0%
!! ATTCATGTTTTACTCTATTC+AGG - Chr6:15545281-15545300 MsG0680031170.01.T01:intron 25.0%
!! CAATGTTTGATTTATGTAGT+CGG - Chr6:15545818-15545837 MsG0680031170.01.T01:intron 25.0%
!! TACACGAAAAATACTTGTTT+TGG + Chr6:15543444-15543463 None:intergenic 25.0%
!! TACTCATGCTTAAAATTTTG+TGG - Chr6:15546283-15546302 MsG0680031170.01.T01:intron 25.0%
!! TTTGAGTTTCCTCATAATAT+AGG + Chr6:15545949-15545968 None:intergenic 25.0%
!! TTTTAAATATCTGTCGAGAT+TGG + Chr6:15546585-15546604 None:intergenic 25.0%
!!! ATTTTTGTTTGTAGCAGAAT+TGG - Chr6:15543631-15543650 MsG0680031170.01.T01:intron 25.0%
!!! ATTTTTTCTAGTGATGAACT+CGG - Chr6:15545546-15545565 MsG0680031170.01.T01:intron 25.0%
!!! CCATTTTTTTATCTTAACTC+CGG - Chr6:15545736-15545755 MsG0680031170.01.T01:intron 25.0%
!!! CTTGATATTTTTGTTCCTTT+TGG + Chr6:15546872-15546891 None:intergenic 25.0%
!!! GATTTTCTTTAGAATTGGTA+AGG + Chr6:15544152-15544171 None:intergenic 25.0%
!!! TATATTTGTTGTGTGATGTT+GGG - Chr6:15543828-15543847 MsG0680031170.01.T01:intron 25.0%
!!! TATGTTTTAACTTACAGCAT+TGG - Chr6:15545459-15545478 MsG0680031170.01.T01:intron 25.0%
!!! TGCTAATTGTTTTGATTTAG+GGG - Chr6:15543938-15543957 MsG0680031170.01.T01:intron 25.0%
!!! TTATATTTGTTGTGTGATGT+TGG - Chr6:15543827-15543846 MsG0680031170.01.T01:intron 25.0%
!!! TTTTAAGTTTCAGAGATCTT+TGG - Chr6:15545434-15545453 MsG0680031170.01.T01:intron 25.0%
AAAAAGTAATCAACTTGGGT+TGG - Chr6:15544799-15544818 MsG0680031170.01.T01:intron 30.0%
AAAATAATGCATGTAGATGG+GGG - Chr6:15543387-15543406 MsG0680031170.01.T01:intron 30.0%
AATCAAGTTTATTGTCTGTC+TGG - Chr6:15544625-15544644 MsG0680031170.01.T01:intron 30.0%
ACATCAACAATCAAGGTTTA+CGG + Chr6:15545863-15545882 None:intergenic 30.0%
ACATGCAATATTACTCTTCA+AGG + Chr6:15545411-15545430 None:intergenic 30.0%
AGTTTGTGATAGGAGAATTT+GGG - Chr6:15542358-15542377 MsG0680031170.01.T01:CDS 30.0%
CAAAATGTAGATGTTGAGAT+TGG - Chr6:15545639-15545658 MsG0680031170.01.T01:intron 30.0%
CAAATTGTAAGTACTTCCAT+TGG + Chr6:15542489-15542508 None:intergenic 30.0%
CATTGTCATTCATACAAAGA+AGG + Chr6:15546712-15546731 None:intergenic 30.0%
CCGGAGTTAAGATAAAAAAA+TGG + Chr6:15545739-15545758 None:intergenic 30.0%
CCTTTGTAAGTACAAAATGT+TGG - Chr6:15545507-15545526 MsG0680031170.01.T01:intron 30.0%
CGAATTAAAACCCTCAAAAT+CGG + Chr6:15542153-15542172 None:intergenic 30.0%
GAAAATAATGCATGTAGATG+GGG - Chr6:15543386-15543405 MsG0680031170.01.T01:intron 30.0%
GAAATAAGATAGGTGTTTGT+TGG - Chr6:15547418-15547437 MsG0680031170.01.T01:intron 30.0%
GGGAAAAAAGTAATCAACTT+GGG - Chr6:15544795-15544814 MsG0680031170.01.T01:intron 30.0%
GGGTCTTAAACCTAATTATT+CGG - Chr6:15542894-15542913 MsG0680031170.01.T01:intron 30.0%
GGTTGTTAGAATTAAATTGG+AGG + Chr6:15546691-15546710 None:intergenic 30.0%
GTCCATCATAAATTTGTCTT+TGG - Chr6:15544307-15544326 MsG0680031170.01.T01:intron 30.0%
TAAATTGCAGTAAAGTTGTG+AGG - Chr6:15547067-15547086 MsG0680031170.01.T01:intron 30.0%
TAAGCATGGTCAAATTGATT+TGG - Chr6:15542630-15542649 MsG0680031170.01.T01:intron 30.0%
TAATACAGTCTTAGATAAGG+GGG - Chr6:15544775-15544794 MsG0680031170.01.T01:intron 30.0%
TATCTATATTATGAGGAAGC+TGG - Chr6:15546087-15546106 MsG0680031170.01.T01:intron 30.0%
TCTACCATATAAACAGCATA+GGG - Chr6:15544339-15544358 MsG0680031170.01.T01:intron 30.0%
TGAAAAGTGAATAAAGATGC+TGG - Chr6:15543001-15543020 MsG0680031170.01.T01:intron 30.0%
TGAGTAGGAAACAATAAAAG+CGG + Chr6:15543564-15543583 None:intergenic 30.0%
TGCCAAAGACAAATTTATGA+TGG + Chr6:15544312-15544331 None:intergenic 30.0%
TGTCAAGATTGTAAATTGTG+AGG + Chr6:15544127-15544146 None:intergenic 30.0%
TTACGAAAGAGTAGTTGATT+TGG - Chr6:15542434-15542453 MsG0680031170.01.T01:intron 30.0%
! AAGAAAGTCCTTTAAGAGAT+TGG - Chr6:15545146-15545165 MsG0680031170.01.T01:intron 30.0%
! AAGAAGTACATCAACAATCA+AGG + Chr6:15545870-15545889 None:intergenic 30.0%
! AAGCATCTTTTTGTAGCTTT+TGG - Chr6:15544255-15544274 MsG0680031170.01.T01:CDS 30.0%
! AAGTTTTTGTACTGTCATTC+GGG - Chr6:15543036-15543055 MsG0680031170.01.T01:intron 30.0%
! AGATTGGTTCAAGTAATAAC+AGG - Chr6:15545655-15545674 MsG0680031170.01.T01:intron 30.0%
! ATTCATGTTTTACTCGATTC+AGG - Chr6:15545216-15545235 MsG0680031170.01.T01:intron 30.0%
! CAAGTTTTTGTACTGTCATT+CGG - Chr6:15543035-15543054 MsG0680031170.01.T01:intron 30.0%
! CAATCTCAACATCTACATTT+TGG + Chr6:15545641-15545660 None:intergenic 30.0%
! CCAACATTTTGTACTTACAA+AGG + Chr6:15545510-15545529 None:intergenic 30.0%
! GCAAAATGATCTGAAATATG+AGG - Chr6:15546807-15546826 MsG0680031170.01.T01:intron 30.0%
! GTTACTAGTACTGAGAAAAA+TGG - Chr6:15543147-15543166 MsG0680031170.01.T01:intron 30.0%
! TAACATTATGGCATTGAAGA+CGG - Chr6:15547529-15547548 MsG0680031170.01.T01:CDS 30.0%
! TGTTTTCTCCTTCGATTTTA+TGG - Chr6:15546449-15546468 MsG0680031170.01.T01:intron 30.0%
! TTTTAAGCATGAGTAGTTTC+TGG + Chr6:15546278-15546297 None:intergenic 30.0%
!! ATTCGTTTGTTATGTAAGCA+TGG - Chr6:15542616-15542635 MsG0680031170.01.T01:intron 30.0%
!! ATTCTAGAATGGAATATGTG+AGG - Chr6:15542234-15542253 MsG0680031170.01.T01:CDS 30.0%
!! GCTTCTCTTCATTTTAAGAA+AGG - Chr6:15542826-15542845 MsG0680031170.01.T01:intron 30.0%
!! TGATAATTGTGGTTTGTTGA+GGG - Chr6:15542110-15542129 MsG0680031170.01.T02:CDS 30.0%
!! TGTTGTGTTGTTGATAATTG+TGG - Chr6:15542099-15542118 MsG0680031170.01.T02:CDS 30.0%
!! TTGATAATTGTGGTTTGTTG+AGG - Chr6:15542109-15542128 MsG0680031170.01.T02:CDS 30.0%
!!! ATTGTTTTGATTTAGGGGAT+AGG - Chr6:15543943-15543962 MsG0680031170.01.T01:intron 30.0%
!!! CAGCATTGATGTTTTTTCAT+TGG - Chr6:15542032-15542051 MsG0680031170.01.T02:CDS 30.0%
!!! TACTTGTTTTGGCAAAATTG+AGG + Chr6:15543433-15543452 None:intergenic 30.0%
!!! TCAACATCTACATTTTGGTT+TGG + Chr6:15545636-15545655 None:intergenic 30.0%
!!! TGAGGGTTTTAATTCGAAAA+GGG - Chr6:15542157-15542176 MsG0680031170.01.T02:CDS 30.0%
!!! TTAGGTTTTTGGTTGTTTTG+AGG - Chr6:15542201-15542220 MsG0680031170.01.T01:CDS 30.0%
!!! TTCGTGTTTTTTTGATGTAG+CGG - Chr6:15542335-15542354 MsG0680031170.01.T01:CDS 30.0%
!!! TTGAGGGTTTTAATTCGAAA+AGG - Chr6:15542156-15542175 MsG0680031170.01.T02:CDS 30.0%
!!! TTGTTTTGATTTAGGGGATA+GGG - Chr6:15543944-15543963 MsG0680031170.01.T01:intron 30.0%
AAAATGAAGAGAAGCAAGCA+AGG + Chr6:15542821-15542840 None:intergenic 35.0%
AACAATAAAAGCGGAGCTAT+AGG + Chr6:15543555-15543574 None:intergenic 35.0%
AACTAGTAGTGTTCATGGTT+AGG + Chr6:15545691-15545710 None:intergenic 35.0%
ACAAATGTAGACACCTTCAA+GGG - Chr6:15547020-15547039 MsG0680031170.01.T01:intron 35.0%
ACTGAAATTGACATCGAGTA+GGG + Chr6:15546182-15546201 None:intergenic 35.0%
AGAAAGCAAAGCTTTCTTTC+AGG - Chr6:15545169-15545188 MsG0680031170.01.T01:intron 35.0%
AGATTCATATTCCAGATCAG+TGG + Chr6:15547162-15547181 None:intergenic 35.0%
AGTCAACGACACAATTAACT+TGG + Chr6:15544495-15544514 None:intergenic 35.0%
AGTGAAAACAAACATAAGCC+AGG + Chr6:15545251-15545270 None:intergenic 35.0%
ATCCTACTCCCTATATTATG+AGG - Chr6:15545937-15545956 MsG0680031170.01.T01:intron 35.0%
ATCCTTTCCTCAAAGATTAG+TGG + Chr6:15545991-15546010 None:intergenic 35.0%
ATGTAGTTTAACTCATGCTG+CGG - Chr6:15542696-15542715 MsG0680031170.01.T01:intron 35.0%
ATTACACGAAAGATGCATAG+TGG + Chr6:15543706-15543725 None:intergenic 35.0%
ATTACGAACAAGTTGCCAAA+AGG - Chr6:15546854-15546873 MsG0680031170.01.T01:CDS 35.0%
CAAAAAACACTTCCCACAAA+TGG + Chr6:15543877-15543896 None:intergenic 35.0%
CAACTGAATGAAAGATAGTC+CGG - Chr6:15543261-15543280 MsG0680031170.01.T01:intron 35.0%
CTCACCAAATTATCCTTAGT+CGG - Chr6:15546972-15546991 MsG0680031170.01.T01:intron 35.0%
CTGTGTCAGTTACTCAAATA+TGG - Chr6:15546123-15546142 MsG0680031170.01.T01:intron 35.0%
GACTATCTTTCATTCAGTTG+AGG + Chr6:15543261-15543280 None:intergenic 35.0%
GAGTTTGTGATAGGAGAATT+TGG - Chr6:15542357-15542376 MsG0680031170.01.T01:CDS 35.0%
GGGGAAAAAAGTAATCAACT+TGG - Chr6:15544794-15544813 MsG0680031170.01.T01:intron 35.0%
GTAGAGAAGATGAAGAGAAT+CGG - Chr6:15542456-15542475 MsG0680031170.01.T01:intron 35.0%
GTCTACCATATAAACAGCAT+AGG - Chr6:15544338-15544357 MsG0680031170.01.T01:intron 35.0%
TAAATATCTGTCGAGATTGG+CGG + Chr6:15546582-15546601 None:intergenic 35.0%
TACGAGCTCGTAGAAATATT+TGG - Chr6:15544667-15544686 MsG0680031170.01.T01:intron 35.0%
TCTCTTTCTACACTCTTCAA+TGG + Chr6:15547341-15547360 None:intergenic 35.0%
TCTGCATAGTAGTATCATGA+TGG - Chr6:15547179-15547198 MsG0680031170.01.T01:intron 35.0%
TCTTGTGTAAAAACAGGGTA+AGG + Chr6:15545001-15545020 None:intergenic 35.0%
TGCTTTCTCCAATCTCTTAA+AGG + Chr6:15545157-15545176 None:intergenic 35.0%
TGGAAGATAGATGACTTTGA+TGG - Chr6:15547199-15547218 MsG0680031170.01.T01:intron 35.0%
TGTTGATGTGTTAATGAGGT+TGG - Chr6:15542262-15542281 MsG0680031170.01.T01:CDS 35.0%
TTCCTCATAATATAGGGAGT+AGG + Chr6:15545942-15545961 None:intergenic 35.0%
! AACCAAATACATTTTCCCTC+GGG + Chr6:15545333-15545352 None:intergenic 35.0%
! AACGACACAATTAACTTGGA+TGG + Chr6:15544491-15544510 None:intergenic 35.0%
! AATTCGAAAAGGGTGTGTTT+GGG - Chr6:15542167-15542186 MsG0680031170.01.T02:intron 35.0%
! AGACTATTGACTACTTGTGA+AGG + Chr6:15544748-15544767 None:intergenic 35.0%
! AGTTTTTGTACTGTCATTCG+GGG - Chr6:15543037-15543056 MsG0680031170.01.T01:intron 35.0%
! ATTTGAGACCAGATCAGTAT+AGG + Chr6:15546479-15546498 None:intergenic 35.0%
! ATTTTCCCTGTTCTAGCATA+TGG - Chr6:15544550-15544569 MsG0680031170.01.T01:intron 35.0%
! CAACCAAATACATTTTCCCT+CGG + Chr6:15545334-15545353 None:intergenic 35.0%
! CATGCTTAAAATTTTGTGGC+TGG - Chr6:15546287-15546306 MsG0680031170.01.T01:intron 35.0%
! GACCTTGATAATCTGGAATT+CGG - Chr6:15545774-15545793 MsG0680031170.01.T01:intron 35.0%
! TAATTCGAAAAGGGTGTGTT+TGG - Chr6:15542166-15542185 MsG0680031170.01.T02:intron 35.0%
! TCGATCTTTTGCTAGTATTC+AGG - Chr6:15543099-15543118 MsG0680031170.01.T01:intron 35.0%
! TTGAAAGATGTGTTGTTCGA+TGG + Chr6:15546518-15546537 None:intergenic 35.0%
! TTGAAGAGTGTAGAAAGAGA+TGG - Chr6:15547341-15547360 MsG0680031170.01.T01:intron 35.0%
!! CTAATTTTGGTAGGCTAGTT+TGG - Chr6:15544891-15544910 MsG0680031170.01.T01:intron 35.0%
!! CTTCATGAGATGATGGATAA+GGG - Chr6:15542874-15542893 MsG0680031170.01.T01:intron 35.0%
!! TAGGCTAGTTTGGCTTAAAA+GGG - Chr6:15544901-15544920 MsG0680031170.01.T01:intron 35.0%
!! TCAATTTCAGTGGACTAGTT+TGG - Chr6:15546191-15546210 MsG0680031170.01.T01:intron 35.0%
!! TCTTCATGAGATGATGGATA+AGG - Chr6:15542873-15542892 MsG0680031170.01.T01:intron 35.0%
!! TGTCTTTGGAGTTATCTAGA+AGG - Chr6:15542964-15542983 MsG0680031170.01.T01:intron 35.0%
!!! CATTTGTGGGAAGTGTTTTT+TGG - Chr6:15543875-15543894 MsG0680031170.01.T01:intron 35.0%
!!! TCACGCTTTTTTTCATGCAA+TGG - Chr6:15547485-15547504 MsG0680031170.01.T01:intron 35.0%
!!! TGTTTTGGCAAAATTGAGGA+GGG + Chr6:15543429-15543448 None:intergenic 35.0%
!!! TTACCCTGTTTTTACACAAG+AGG - Chr6:15545000-15545019 MsG0680031170.01.T01:intron 35.0%
!!! TTGTTTTGGCAAAATTGAGG+AGG + Chr6:15543430-15543449 None:intergenic 35.0%
AAAAGCGGAGCTATAGGATT+TGG + Chr6:15543549-15543568 None:intergenic 40.0%
AAAGAGATGGAGAGACTTAG+AGG - Chr6:15547354-15547373 MsG0680031170.01.T01:intron 40.0%
AAAGATAGTCCGGCTAAAAC+GGG - Chr6:15543271-15543290 MsG0680031170.01.T01:intron 40.0%
AAAGCGGAGCTATAGGATTT+GGG + Chr6:15543548-15543567 None:intergenic 40.0%
AAATTGTTGGTGCAGATGAC+AGG - Chr6:15546045-15546064 MsG0680031170.01.T01:intron 40.0%
AACAACACAACAACCATCTC+AGG + Chr6:15542091-15542110 None:intergenic 40.0%
AAGAGATGGAGAGACTTAGA+GGG - Chr6:15547355-15547374 MsG0680031170.01.T01:intron 40.0%
ACACTTCCATATGCTAGAAC+AGG + Chr6:15544559-15544578 None:intergenic 40.0%
ACAGCCTCTTGTGTAAAAAC+AGG + Chr6:15545007-15545026 None:intergenic 40.0%
ACGATTAGAGAAATGCACAG+AGG - Chr6:15547270-15547289 MsG0680031170.01.T01:intron 40.0%
AGCCGAATTCCAGATTATCA+AGG + Chr6:15545779-15545798 None:intergenic 40.0%
AGGAATGGTGATTCCTTCAA+AGG + Chr6:15546246-15546265 None:intergenic 40.0%
AGGGAAAATGTTACCTTGGA+CGG + Chr6:15544539-15544558 None:intergenic 40.0%
ATATTCCAGATCAGTGGCAT+TGG + Chr6:15547156-15547175 None:intergenic 40.0%
ATGGCTCAGCAAGATATTTG+TGG - Chr6:15547569-15547588 MsG0680031170.01.T01:CDS 40.0%
CACAAATGTAGACACCTTCA+AGG - Chr6:15547019-15547038 MsG0680031170.01.T01:intron 40.0%
CACTGAAATTGACATCGAGT+AGG + Chr6:15546183-15546202 None:intergenic 40.0%
CACTTCCATATGCTAGAACA+GGG + Chr6:15544558-15544577 None:intergenic 40.0%
CAGCCTCTTGTGTAAAAACA+GGG + Chr6:15545006-15545025 None:intergenic 40.0%
CAGGATTCTTCATGAGATGA+TGG - Chr6:15542867-15542886 MsG0680031170.01.T01:intron 40.0%
CATATGAGAACGAGACATAG+AGG - Chr6:15543233-15543252 MsG0680031170.01.T01:intron 40.0%
CATCTCATGAAGAATCCTGT+GGG + Chr6:15542866-15542885 None:intergenic 40.0%
CGAACAATACACCAAATGGT+GGG + Chr6:15544975-15544994 None:intergenic 40.0%
CGATTCAGGTATAAATGACC+TGG - Chr6:15545230-15545249 MsG0680031170.01.T01:intron 40.0%
CTACTCGATGTCAATTTCAG+TGG - Chr6:15546181-15546200 MsG0680031170.01.T01:intron 40.0%
GAAAGATAGTCCGGCTAAAA+CGG - Chr6:15543270-15543289 MsG0680031170.01.T01:intron 40.0%
GAACAGGGAAAATGTTACCT+TGG + Chr6:15544543-15544562 None:intergenic 40.0%
GAAGCTCACATAATGTGGTT+TGG - Chr6:15543209-15543228 MsG0680031170.01.T01:intron 40.0%
GAGACGATGGAACATGAAAA+TGG - Chr6:15542563-15542582 MsG0680031170.01.T01:intron 40.0%
GAGGAAGTCCGAAATAAGAT+AGG - Chr6:15547408-15547427 MsG0680031170.01.T01:intron 40.0%
GCAATGGCAAGTTCAAAAAG+AGG - Chr6:15547501-15547520 MsG0680031170.01.T01:CDS 40.0%
GCAGCATGAGTTAAACTACA+TGG + Chr6:15542697-15542716 None:intergenic 40.0%
GGAATGGTGATTCCTTCAAA+GGG + Chr6:15546245-15546264 None:intergenic 40.0%
GGCTCAATGTAGTCTATAGA+AGG - Chr6:15543334-15543353 MsG0680031170.01.T01:intron 40.0%
GTAGTGTTCATGGTTAGGTT+TGG + Chr6:15545686-15545705 None:intergenic 40.0%
TAGCCTACCAAAATTAGCAC+CGG + Chr6:15544888-15544907 None:intergenic 40.0%
TAGGTGTGCCATAAAATCGA+AGG + Chr6:15546460-15546479 None:intergenic 40.0%
TAGTGTGTATCAGATGCTCA+CGG + Chr6:15547101-15547120 None:intergenic 40.0%
TATCTTAACTCCGGCGTTTA+GGG - Chr6:15545745-15545764 MsG0680031170.01.T01:intron 40.0%
TCATCTCATGAAGAATCCTG+TGG + Chr6:15542867-15542886 None:intergenic 40.0%
TCATGTGGATTCGAAAGTAG+TGG + Chr6:15546739-15546758 None:intergenic 40.0%
TGACAGAAGCTCACATAATG+TGG - Chr6:15543204-15543223 MsG0680031170.01.T01:intron 40.0%
TGATGTGTTAATGAGGTTGG+TGG - Chr6:15542265-15542284 MsG0680031170.01.T01:CDS 40.0%
TGATTCCTTCAAAGGGAACA+TGG + Chr6:15546238-15546257 None:intergenic 40.0%
TGTTACCATGTTCCCTTTGA+AGG - Chr6:15546230-15546249 MsG0680031170.01.T01:intron 40.0%
TTATCTTAACTCCGGCGTTT+AGG - Chr6:15545744-15545763 MsG0680031170.01.T01:intron 40.0%
TTGTGATAGGAGAATTTGGG+AGG - Chr6:15542361-15542380 MsG0680031170.01.T01:CDS 40.0%
! AGCACCCTATGCTGTTTATA+TGG + Chr6:15544346-15544365 None:intergenic 40.0%
! ATAGGTGTTTGTTGGCACAA+CGG - Chr6:15547426-15547445 MsG0680031170.01.T01:intron 40.0%
! ATGCTATGGTTCCGATTTTG+AGG - Chr6:15542139-15542158 MsG0680031170.01.T02:CDS 40.0%
! ATTCGAAAAGGGTGTGTTTG+GGG - Chr6:15542168-15542187 MsG0680031170.01.T02:intron 40.0%
! ATTTGGGACAAAGAAGCCAA+GGG + Chr6:15543532-15543551 None:intergenic 40.0%
! CAAGATTGGTAACTTTGCTG+AGG - Chr6:15542526-15542545 MsG0680031170.01.T01:intron 40.0%
! GACTTTGATGGCAAAGTTGT+AGG - Chr6:15547211-15547230 MsG0680031170.01.T01:intron 40.0%
! GATGTGTTAATGAGGTTGGT+GGG - Chr6:15542266-15542285 MsG0680031170.01.T01:CDS 40.0%
! GCTTATTGGTTACAGTGAGT+AGG + Chr6:15543579-15543598 None:intergenic 40.0%
! GGAAAGAGACCTTGATAATC+TGG - Chr6:15545767-15545786 MsG0680031170.01.T01:intron 40.0%
! GTTGCCGACTAAGGATAATT+TGG + Chr6:15546979-15546998 None:intergenic 40.0%
! TGCTATGGTTCCGATTTTGA+GGG - Chr6:15542140-15542159 MsG0680031170.01.T02:CDS 40.0%
! TTTGATGGCAAAGTTGTAGG+AGG - Chr6:15547214-15547233 MsG0680031170.01.T01:intron 40.0%
!! AAGGTGTATTGGCTCAAAGA+GGG - Chr6:15547452-15547471 MsG0680031170.01.T01:intron 40.0%
!! ATTCTCTCCGGTGCTAATTT+TGG - Chr6:15544878-15544897 MsG0680031170.01.T01:intron 40.0%
!! GAAGTGTTTTACTTTCCCAC+AGG - Chr6:15542848-15542867 MsG0680031170.01.T01:intron 40.0%
!! GATCACAGTTTTGTGTGAGT+GGG + Chr6:15546932-15546951 None:intergenic 40.0%
!! GTAGGCTAGTTTGGCTTAAA+AGG - Chr6:15544900-15544919 MsG0680031170.01.T01:intron 40.0%
!! GTTGAGGGATTTTGATGCTA+TGG - Chr6:15542125-15542144 MsG0680031170.01.T02:CDS 40.0%
!! TAAGGTGTATTGGCTCAAAG+AGG - Chr6:15547451-15547470 MsG0680031170.01.T01:intron 40.0%
!! TGAAGGTGTCTACATTTGTG+TGG + Chr6:15547019-15547038 None:intergenic 40.0%
!!! GAGAAGGGCATTTAGGTTTT+TGG - Chr6:15542190-15542209 MsG0680031170.01.T01:CDS 40.0%
!!! GTTTTTGGTTGTTTTGAGGC+TGG - Chr6:15542205-15542224 MsG0680031170.01.T01:CDS 40.0%
AATTGACATCGAGTAGGGTC+CGG + Chr6:15546177-15546196 None:intergenic 45.0%
ACACAAAACTGTGATCCGTG+AGG - Chr6:15546936-15546955 MsG0680031170.01.T01:CDS 45.0%
ACAGAGGCGATGAATGAATG+GGG - Chr6:15547286-15547305 MsG0680031170.01.T01:intron 45.0%
ACGAAATGTGTATCCCTCAC+CGG - Chr6:15547120-15547139 MsG0680031170.01.T01:intron 45.0%
AGACGCAGCATTATTCCTCA+CGG + Chr6:15546954-15546973 None:intergenic 45.0%
AGTGTGTATCAGATGCTCAC+GGG + Chr6:15547100-15547119 None:intergenic 45.0%
ATCTTAACTCCGGCGTTTAG+GGG - Chr6:15545746-15545765 MsG0680031170.01.T01:intron 45.0%
ATGAATGGGGTCGTAAGTTG+CGG - Chr6:15547299-15547318 MsG0680031170.01.T01:intron 45.0%
ATGGCAAAGTTGTAGGAGGA+TGG - Chr6:15547218-15547237 MsG0680031170.01.T01:intron 45.0%
ATGGCACACCTATACTGATC+TGG - Chr6:15546468-15546487 MsG0680031170.01.T01:intron 45.0%
CAACATGATGTCTGTTCCCT+TGG - Chr6:15543513-15543532 MsG0680031170.01.T01:intron 45.0%
CACAGAGGCGATGAATGAAT+GGG - Chr6:15547285-15547304 MsG0680031170.01.T01:intron 45.0%
CAGAACTGCTTTCTGCAAAG+AGG - Chr6:15545373-15545392 MsG0680031170.01.T01:intron 45.0%
GAAAATGTTACCTTGGACGG+TGG + Chr6:15544536-15544555 None:intergenic 45.0%
GAACAGACATCATGTTGAGC+AGG + Chr6:15543510-15543529 None:intergenic 45.0%
GAGTATGTGGTTGATTGTGC+TGG - Chr6:15542763-15542782 MsG0680031170.01.T01:intron 45.0%
GCGAACAATACACCAAATGG+TGG + Chr6:15544976-15544995 None:intergenic 45.0%
GCTGAAAACTGTAACTCCAG+AGG + Chr6:15544411-15544430 None:intergenic 45.0%
GCTGCGAACAATACACCAAA+TGG + Chr6:15544979-15544998 None:intergenic 45.0%
GGCTGAGAGAAAGTAAAGTC+TGG - Chr6:15545795-15545814 MsG0680031170.01.T01:intron 45.0%
GTCCCGAGGGAAAATGTATT+TGG - Chr6:15545328-15545347 MsG0680031170.01.T01:intron 45.0%
GTGTTACGCGCTCATGTATA+AGG - Chr6:15546546-15546565 MsG0680031170.01.T01:intron 45.0%
GTTGTTGTCATGTGACCGTA+AGG + Chr6:15545051-15545070 None:intergenic 45.0%
TCAGGATCACAACAAAGCTC+AGG + Chr6:15542073-15542092 None:intergenic 45.0%
TCCAAAAGACACGCGCTTTA+AGG - Chr6:15546760-15546779 MsG0680031170.01.T01:intron 45.0%
TGATTTAGGGGATAGGGTGA+GGG - Chr6:15543950-15543969 MsG0680031170.01.T01:intron 45.0%
TGGCAAAGTTGTAGGAGGAT+GGG - Chr6:15547219-15547238 MsG0680031170.01.T01:intron 45.0%
TTCGCAAGTGGCAAGATATG+AGG - Chr6:15547389-15547408 MsG0680031170.01.T01:intron 45.0%
TTGAGGATGATGTGCAAGAG+AGG - Chr6:15542408-15542427 MsG0680031170.01.T01:intron 45.0%
TTGATTTAGGGGATAGGGTG+AGG - Chr6:15543949-15543968 MsG0680031170.01.T01:intron 45.0%
TTGTCAAGCTCTTGAGACGA+TGG - Chr6:15542550-15542569 MsG0680031170.01.T01:intron 45.0%
TTTGTTGGCACAACGGTCTA+AGG - Chr6:15547433-15547452 MsG0680031170.01.T01:intron 45.0%
! AAGAAGCCAAACTAGCCTGA+GGG + Chr6:15545097-15545116 None:intergenic 45.0%
! AAGCCTTTTCCCAGTAAGTG+GGG + Chr6:15543748-15543767 None:intergenic 45.0%
! ATGGCATTGAAGACGGATGA+AGG - Chr6:15547536-15547555 MsG0680031170.01.T01:CDS 45.0%
! CAAGCCTTTTCCCAGTAAGT+GGG + Chr6:15543749-15543768 None:intergenic 45.0%
! CACAACGGTCTAAGGTGTAT+TGG - Chr6:15547441-15547460 MsG0680031170.01.T01:intron 45.0%
! CAGTTTGCTTACTCAACGAG+TGG + Chr6:15546786-15546805 None:intergenic 45.0%
! CGCCACTAATCTTTGAGGAA+AGG - Chr6:15545986-15546005 MsG0680031170.01.T01:intron 45.0%
! GATGTAGCGGAGTTTGTGAT+AGG - Chr6:15542348-15542367 MsG0680031170.01.T01:CDS 45.0%
! GATTTGGGACAAAGAAGCCA+AGG + Chr6:15543533-15543552 None:intergenic 45.0%
! GCGTGTCTTTTGGATTCATG+TGG + Chr6:15546754-15546773 None:intergenic 45.0%
! GCTGGATGAGGATTCTAGAA+TGG - Chr6:15542223-15542242 MsG0680031170.01.T01:CDS 45.0%
! GCTTTGTTGTGATCCTGAGA+TGG - Chr6:15542075-15542094 MsG0680031170.01.T02:CDS 45.0%
! GGTACGTGCTATTCTGTTGT+AGG - Chr6:15543120-15543139 MsG0680031170.01.T01:intron 45.0%
! TCGAAACAAGTTGCCGACTA+AGG + Chr6:15546988-15547007 None:intergenic 45.0%
! TGGCATTGAAGACGGATGAA+GGG - Chr6:15547537-15547556 MsG0680031170.01.T01:CDS 45.0%
! TTACACAAGAGGCTGTTTCC+AGG - Chr6:15545011-15545030 MsG0680031170.01.T01:intron 45.0%
! TTTGGCTTAAAAGGGCAACC+CGG - Chr6:15544909-15544928 MsG0680031170.01.T01:intron 45.0%
!! CATGAGTAGTTTCTGGCTAC+TGG + Chr6:15546271-15546290 None:intergenic 45.0%
!! CTTTCTCTACCCGTTTTAGC+CGG + Chr6:15543283-15543302 None:intergenic 45.0%
!! GAGAATCGGTGTTGAACCAA+TGG - Chr6:15542470-15542489 MsG0680031170.01.T01:intron 45.0%
!! GGATCACAGTTTTGTGTGAG+TGG + Chr6:15546933-15546952 None:intergenic 45.0%
!! TCTCCGGTGCTAATTTTGGT+AGG - Chr6:15544882-15544901 MsG0680031170.01.T01:intron 45.0%
!! TGGCATTGGCAGTTTGATTC+CGG + Chr6:15547142-15547161 None:intergenic 45.0%
!! AAAAAAAAAAAAAAAAAAAG+AGG - Chr6:15545122-15545141 MsG0680031170.01.T01:intron 5.0%
!! AAAAAAAAAAAAAAAAAAGA+GGG - Chr6:15545123-15545142 MsG0680031170.01.T01:intron 5.0%
AACTGCCAATGCCACTGATC+TGG - Chr6:15547148-15547167 MsG0680031170.01.T01:intron 50.0%
AGGAGAATTTGGGAGGAACG+TGG - Chr6:15542368-15542387 MsG0680031170.01.T01:CDS 50.0%
CAACTTTACCAGTTGCGCCA+AGG - Chr6:15545067-15545086 MsG0680031170.01.T01:intron 50.0%
CAGTAAAGTTGTGAGGCTCC+TGG - Chr6:15547074-15547093 MsG0680031170.01.T01:intron 50.0%
CCACTTACTGGGAAAAGGCT+TGG - Chr6:15543747-15543766 MsG0680031170.01.T01:intron 50.0%
CGATGAAGCGCATGAGTATG+TGG - Chr6:15542750-15542769 MsG0680031170.01.T01:intron 50.0%
GACAGTCTACACTCGACACA+AGG + Chr6:15544435-15544454 None:intergenic 50.0%
GACTTGAACCCGTGACCTTA+CGG - Chr6:15545033-15545052 MsG0680031170.01.T01:intron 50.0%
GATTTAGGGGATAGGGTGAG+GGG - Chr6:15543951-15543970 MsG0680031170.01.T01:intron 50.0%
GCACAGAGATGTTCCCTTGA+AGG + Chr6:15547036-15547055 None:intergenic 50.0%
GCACAGAGGCGATGAATGAA+TGG - Chr6:15547284-15547303 MsG0680031170.01.T01:intron 50.0%
GGATGAAGGGGAAACAGTCA+TGG - Chr6:15547550-15547569 MsG0680031170.01.T01:CDS 50.0%
GTAGACTGTCCAAAGACTCC+AGG - Chr6:15544445-15544464 MsG0680031170.01.T01:intron 50.0%
GTCATGTGACCGTAAGGTCA+CGG + Chr6:15545045-15545064 None:intergenic 50.0%
TCATGTGACCGTAAGGTCAC+GGG + Chr6:15545044-15545063 None:intergenic 50.0%
TGCTCAATAGCTACGGGTTC+AGG - Chr6:15543062-15543081 MsG0680031170.01.T01:intron 50.0%
TGGCAGTTTGATTCCGGTGA+GGG + Chr6:15547136-15547155 None:intergenic 50.0%
TGTAGTCGGACTGCAACTAG+CGG - Chr6:15545832-15545851 MsG0680031170.01.T01:intron 50.0%
TTGGCAGTTTGATTCCGGTG+AGG + Chr6:15547137-15547156 None:intergenic 50.0%
! AAAGGGTGTGTTTGGGGAGA+AGG - Chr6:15542174-15542193 MsG0680031170.01.T02:intron 50.0%
! AAGGGTGTGTTTGGGGAGAA+GGG - Chr6:15542175-15542194 MsG0680031170.01.T02:intron 50.0%
! AGAAGCCAAACTAGCCTGAG+GGG + Chr6:15545096-15545115 None:intergenic 50.0%
! CCAAGCCTTTTCCCAGTAAG+TGG + Chr6:15543750-15543769 None:intergenic 50.0%
! CGGGGTTTGCTCAATAGCTA+CGG - Chr6:15543055-15543074 MsG0680031170.01.T01:intron 50.0%
! CTTTTCCCAGTAAGTGGGGT+CGG + Chr6:15543744-15543763 None:intergenic 50.0%
! GAAGAAGCCAAACTAGCCTG+AGG + Chr6:15545098-15545117 None:intergenic 50.0%
! GCCTTAAAGCGCGTGTCTTT+TGG + Chr6:15546764-15546783 None:intergenic 50.0%
! GGCATTGAAGACGGATGAAG+GGG - Chr6:15547538-15547557 MsG0680031170.01.T01:CDS 50.0%
! GGGGTTTGCTCAATAGCTAC+GGG - Chr6:15543056-15543075 MsG0680031170.01.T01:intron 50.0%
! TGGTGGGTGTGTCAAAGTTC+TGG - Chr6:15542282-15542301 MsG0680031170.01.T01:CDS 50.0%
! TTCTGGCTACTGGAGAGGAA+TGG + Chr6:15546261-15546280 None:intergenic 50.0%
!! CAGTTTTGTGTGAGTGGGTG+TGG + Chr6:15546927-15546946 None:intergenic 50.0%
!! GTAATCAACTTGGGTTGGCC+TGG - Chr6:15544804-15544823 MsG0680031170.01.T01:intron 50.0%
!! GTAGTTTCTGGCTACTGGAG+AGG + Chr6:15546266-15546285 None:intergenic 50.0%
!! GTTTGGGGAGAAGGGCATTT+AGG - Chr6:15542183-15542202 MsG0680031170.01.T01:CDS 50.0%
!!! GGTTGTTTTGAGGCTGGATG+AGG - Chr6:15542211-15542230 MsG0680031170.01.T01:CDS 50.0%
AAGGTCACGGGTTCAAGTCC+TGG + Chr6:15545032-15545051 None:intergenic 55.0%
ACTGAAGCTCCCGCATATGC+AGG - Chr6:15544935-15544954 MsG0680031170.01.T01:intron 55.0%
ACTGCAGTGTACATGTCCCG+AGG - Chr6:15545314-15545333 MsG0680031170.01.T01:intron 55.0%
AGTAAGTGGGGTCGGCTACA+TGG + Chr6:15543736-15543755 None:intergenic 55.0%
ATCGAACCCGAGACCTTGAG+AGG + Chr6:15544860-15544879 None:intergenic 55.0%
ATCGAGTAGGGTCCGGAACA+TGG + Chr6:15546170-15546189 None:intergenic 55.0%
ATGTAGCCGACCCCACTTAC+TGG - Chr6:15543735-15543754 MsG0680031170.01.T01:intron 55.0%
CGACCCCACTTACTGGGAAA+AGG - Chr6:15543742-15543761 MsG0680031170.01.T01:intron 55.0%
CTGAAGCTCCCGCATATGCA+GGG - Chr6:15544936-15544955 MsG0680031170.01.T01:intron 55.0%
CTGCAGTGTACATGTCCCGA+GGG - Chr6:15545315-15545334 MsG0680031170.01.T01:intron 55.0%
CTTGGAGTGTGCTCCTCTCA+AGG - Chr6:15544844-15544863 MsG0680031170.01.T01:intron 55.0%
GAGTGTGCAGAGTTCGCAAG+TGG - Chr6:15547377-15547396 MsG0680031170.01.T01:intron 55.0%
GCGCTGTTACCTGGAGTCTT+TGG + Chr6:15544457-15544476 None:intergenic 55.0%
GGATGGGAGAGAGGTCAACA+TGG - Chr6:15547235-15547254 MsG0680031170.01.T01:intron 55.0%
GGTCTCTTTCCCCTAAACGC+CGG + Chr6:15545758-15545777 None:intergenic 55.0%
GTAGTCGGACTGCAACTAGC+GGG - Chr6:15545833-15545852 MsG0680031170.01.T01:intron 55.0%
GTCTCGGGTTCGATTCTCTC+CGG - Chr6:15544866-15544885 MsG0680031170.01.T01:intron 55.0%
GTGTGCTCCTCTCAAGGTCT+CGG - Chr6:15544850-15544869 MsG0680031170.01.T01:intron 55.0%
GTTGTAGGAGGATGGGAGAG+AGG - Chr6:15547226-15547245 MsG0680031170.01.T01:intron 55.0%
TAGTCGGACTGCAACTAGCG+GGG - Chr6:15545834-15545853 MsG0680031170.01.T01:intron 55.0%
TGTAGCCGACCCCACTTACT+GGG - Chr6:15543736-15543755 MsG0680031170.01.T01:intron 55.0%
TGTGCTCCTCTCAAGGTCTC+GGG - Chr6:15544851-15544870 MsG0680031170.01.T01:intron 55.0%
! ACTAGCCTGAGGGGTAACCT+TGG + Chr6:15545087-15545106 None:intergenic 55.0%
! CTTGAGAGGAGCACACTCCA+AGG + Chr6:15544846-15544865 None:intergenic 55.0%
! GGTTACCCCTCAGGCTAGTT+TGG - Chr6:15545088-15545107 MsG0680031170.01.T01:intron 55.0%
!! ATCAACTTGGGTTGGCCTGG+TGG - Chr6:15544807-15544826 MsG0680031170.01.T01:intron 55.0%
AACGCGACAGCGCTGTTACC+TGG + Chr6:15544466-15544485 None:intergenic 60.0%
AGGGGTAACCTTGGCGCAAC+TGG + Chr6:15545078-15545097 None:intergenic 60.0%
ATGCGGGAGCTTCAGTGCAC+CGG + Chr6:15544931-15544950 None:intergenic 60.0%
CATATGCAGGGTCCGGGAAG+GGG - Chr6:15544948-15544967 MsG0680031170.01.T01:intron 60.0%
CTTCCCGGACCCTGCATATG+CGG + Chr6:15544948-15544967 None:intergenic 60.0%
GCATATGCAGGGTCCGGGAA+GGG - Chr6:15544947-15544966 MsG0680031170.01.T01:intron 60.0%
GTATCAGATGCTCACGGGCC+AGG + Chr6:15547095-15547114 None:intergenic 60.0%
TCCACTGCACTGTCGACCTC+TGG - Chr6:15544392-15544411 MsG0680031170.01.T01:intron 60.0%
TCCAGAGGTCGACAGTGCAG+TGG + Chr6:15544396-15544415 None:intergenic 60.0%
TTCCCGGACCCTGCATATGC+GGG + Chr6:15544947-15544966 None:intergenic 60.0%
TTGCGCCAAGGTTACCCCTC+AGG - Chr6:15545079-15545098 MsG0680031170.01.T01:intron 60.0%
! CAAATGGTGGGACCCCTTCC+CGG + Chr6:15544963-15544982 None:intergenic 60.0%
!! GTGGTGTTGGCTTGGGACCT+TGG - Chr6:15544826-15544845 MsG0680031170.01.T01:intron 60.0%
!! TGGCCTGGTGGTGTTGGCTT+GGG - Chr6:15544819-15544838 MsG0680031170.01.T01:intron 60.0%
!! TTGGCCTGGTGGTGTTGGCT+TGG - Chr6:15544818-15544837 MsG0680031170.01.T01:intron 60.0%
!! TTGGGTTGGCCTGGTGGTGT+TGG - Chr6:15544813-15544832 MsG0680031170.01.T01:intron 60.0%
CGCATATGCAGGGTCCGGGA+AGG - Chr6:15544946-15544965 MsG0680031170.01.T01:intron 65.0%
CGGGAAGGGGTCCCACCATT+TGG - Chr6:15544961-15544980 MsG0680031170.01.T01:intron 65.0%
CTCCCGCATATGCAGGGTCC+GGG - Chr6:15544942-15544961 MsG0680031170.01.T01:intron 65.0%
GCTCCCGCATATGCAGGGTC+CGG - Chr6:15544941-15544960 MsG0680031170.01.T01:intron 65.0%
GGTCCCAAGCCAACACCACC+AGG + Chr6:15544825-15544844 None:intergenic 65.0%
TGCGGGAGCTTCAGTGCACC+GGG + Chr6:15544930-15544949 None:intergenic 65.0%
ACGGTGGCTCAGCAGCGCTG+TGG + Chr6:15544520-15544539 None:intergenic 70.0%
CGCTGCTGAGCCACCGTCCA+AGG - Chr6:15544523-15544542 MsG0680031170.01.T01:intron 70.0%
Chromosome Type Strat End Strand Name
Chr6 gene 15541983 15547628 15541983 ID=MsG0680031170.01;Name=MsG0680031170.01
Chr6 mRNA 15542182 15547628 15542182 ID=MsG0680031170.01.T01;Parent=MsG0680031170.01;Name=MsG0680031170.01.T01;_AED=0.74;_eAED=0.76;_QI=0|0|0|0.5|0.33|0.75|4|0|207
Chr6 exon 15547491 15547628 15547491 ID=MsG0680031170.01.T01:exon:9284;Parent=MsG0680031170.01.T01
Chr6 exon 15546827 15546977 15546827 ID=MsG0680031170.01.T01:exon:9283;Parent=MsG0680031170.01.T01
Chr6 exon 15544195 15544308 15544195 ID=MsG0680031170.01.T01:exon:9282;Parent=MsG0680031170.01.T01
Chr6 exon 15542182 15542402 15542182 ID=MsG0680031170.01.T01:exon:9281;Parent=MsG0680031170.01.T01
Chr6 CDS 15547491 15547628 15547491 ID=MsG0680031170.01.T01:cds;Parent=MsG0680031170.01.T01
Chr6 CDS 15546827 15546977 15546827 ID=MsG0680031170.01.T01:cds;Parent=MsG0680031170.01.T01
Chr6 CDS 15544195 15544308 15544195 ID=MsG0680031170.01.T01:cds;Parent=MsG0680031170.01.T01
Chr6 CDS 15542182 15542402 15542182 ID=MsG0680031170.01.T01:cds;Parent=MsG0680031170.01.T01
Chr6 mRNA 15541983 15542316 15541983 ID=MsG0680031170.01.T02;Parent=MsG0680031170.01;Name=MsG0680031170.01.T02;_AED=0.57;_eAED=0.57;_QI=0|0|0|0.5|0|0|2|0|74
Chr6 exon 15542291 15542316 15542291 ID=MsG0680031170.01.T02:exon:9286;Parent=MsG0680031170.01.T02
Chr6 exon 15541983 15542181 15541983 ID=MsG0680031170.01.T02:exon:9285;Parent=MsG0680031170.01.T02
Chr6 CDS 15542291 15542316 15542291 ID=MsG0680031170.01.T02:cds;Parent=MsG0680031170.01.T02
Chr6 CDS 15541983 15542181 15541983 ID=MsG0680031170.01.T02:cds;Parent=MsG0680031170.01.T02
Gene Sequence

>MsG0680031170.01.T01

ATGGCTTCAGTTATTTACATTTTTGATGAATTAGCTAGTTATAGAGTTTCAGCATTGATGTTTTTTCATTGGCTTAATGTTTCACATCCTGAGCTTTGTTGTGATCCTGAGATGGTTGTTGTGTTGTTGATAATTGTGCATGGTCAAATTGATTTGGCTTTGAAGTTTATTGATAAAATGAGTTTGAAGGGTGTTGAGCCATGTAGTTTAACTCATGCTGCGGTGATAAAGTGTTATTTTGAATTGAGAAAATACGATGAAGCGCATGAGTATGTGGTTGATTGTGCTGGTATATATGAAACTGCAGTGTACATGTCCCGAGGGAAAATGTATTTGGTTGAAAAATTAGATCTATCTAACAGAACTGCTTTCTGCAAAGAGGATGCATTCATGTCCTTGAAGAATGACTTTGATGGCAAAGTTGTAGGAGGATGGGAGAGAGGTCAACATGGTGAAGTGTTGTCACGATTAGAGAAATGCACAGAGGCGATGAATGAATGGGGTCGTAAGTTGCGGTACAAGTATAGAGATGCCATTGAAGAGTGTAGAAAGAGATGGAGAGACTTAGAGGGAGTGTGCAGAGTTCGCAAGTGGCAAGATATGAGGAAGTCCGAAATAAGATAG

>MsG0680031170.01.T02

ATGAATGAATGGGGTCGTAAGTTGCGGTGTTTGTTGGCACAACGGTCTAAGGTGTATTGGCTCAAAGAGGGAGACACAAATTCACGCTTTTTTTCATGCAATGGCAAGTTCAAAAAGAGGCATAATAACATTATGGCATTGAAGACGGATGAAGGGGAAACAGTCATGGCTCAGCAAGATATTTGTGGAGTTGCAAGCAACTATTTTTCAAAGTTGTTTGAGTGA
Protein sequence

>MsG0680031170.01.T01

MASVIYIFDELASYRVSALMFFHWLNVSHPELCCDPEMVVVLLIIVHGQIDLALKFIDKMSLKGVEPCSLTHAAVIKCYFELRKYDEAHEYVVDCAGIYETAVYMSRGKMYLVEKLDLSNRTAFCKEDAFMSLKNDFDGKVVGGWERGQHGEVLSRLEKCTEAMNEWGRKLRYKYRDAIEECRKRWRDLEGVCRVRKWQDMRKSEIR*

>MsG0680031170.01.T02

MNEWGRKLRCLLAQRSKVYWLKEGDTNSRFFSCNGKFKKRHNNIMALKTDEGETVMAQQDICGVASNYFSKLFE*