AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0680031642.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0680031642.01.T01 MTR_7g086380 78.169 284 59 3 12 293 1 283 2.89e-162 452
MsG0680031642.01.T01 MTR_6g027730 99.015 203 2 0 91 293 1 203 3.27e-152 424
MsG0680031642.01.T01 MTR_6g011530 49.793 241 112 5 58 291 41 279 8.45e-75 230
MsG0680031642.01.T01 MTR_7g009710 51.770 226 99 4 58 278 45 265 6.80e-74 228
MsG0680031642.01.T01 MTR_2g058330 44.177 249 120 6 55 288 25 269 9.89e-67 209
MsG0680031642.01.T01 MTR_2g055320 46.377 207 99 4 55 249 16 222 2.13e-58 188
MsG0680031642.01.T01 MTR_6g027740 93.182 88 6 0 1 88 1 88 2.74e-53 169
MsG0680031642.01.T01 MTR_2g084225 40.833 240 125 7 58 288 5 236 4.84e-53 173
MsG0680031642.01.T01 MTR_4g080083 39.256 242 129 7 57 288 4 237 1.28e-52 172
MsG0680031642.01.T01 MTR_2g016230 38.843 242 132 6 58 288 4 240 2.48e-50 166
MsG0680031642.01.T01 MTR_4g080083 42.564 195 97 5 57 242 4 192 4.41e-50 164
MsG0680031642.01.T01 MTR_5g064550 35.743 249 130 6 53 289 1 231 7.48e-44 150
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0680031642.01.T01 AT5G39890 52.743 237 101 6 58 290 47 276 5.05e-77 236
MsG0680031642.01.T01 AT5G15120 46.457 254 122 7 44 288 43 291 3.17e-73 227
MsG0680031642.01.T01 AT5G39890 56.410 195 75 5 58 249 47 234 5.06e-68 212
MsG0680031642.01.T01 AT1G18490 40.449 267 142 6 37 288 16 280 8.83e-63 200
MsG0680031642.01.T01 AT3G58670 42.917 240 124 6 58 288 5 240 1.03e-56 183
MsG0680031642.01.T01 AT3G58670 42.917 240 124 6 58 288 5 240 1.03e-56 183
MsG0680031642.01.T01 AT3G58670 42.917 240 124 6 58 288 5 240 1.03e-56 183
MsG0680031642.01.T01 AT2G42670 40.336 238 130 5 59 288 6 239 1.73e-55 180
MsG0680031642.01.T01 AT2G42670 40.167 239 130 6 59 288 6 240 1.09e-53 175
MsG0680031642.01.T01 AT3G58670 48.571 175 86 3 115 288 26 197 3.34e-49 162
MsG0680031642.01.T01 AT2G42670 46.203 158 81 3 132 288 18 172 2.21e-40 139

Find 51 sgRNAs with CRISPR-Local

Find 173 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AATGGATGGGATTGAATATT+TGG 0.087793 6:-23839976 MsG0680031642.01.T01:CDS
CTCATGCAAGGAAACATTTA+AGG 0.167944 6:-23842993 MsG0680031642.01.T01:CDS
TTCTCTTTGAAAATGCTTTC+AGG 0.169239 6:+23841896 None:intergenic
AAAATTATCACATTTGTATA+TGG 0.267408 6:+23841853 None:intergenic
TTACTTAGTCCAACATCTTC+TGG 0.273780 6:+23841938 None:intergenic
ACAATCTCTGCCATCATCTT+TGG 0.288346 6:+23840637 None:intergenic
TATAGGGCAGTCTCTATAAT+TGG 0.298126 6:+23839948 None:intergenic
TGGAGGTGTATCTATGAAAA+TGG 0.310811 6:-23843167 MsG0680031642.01.T01:CDS
CTGCCATCATCTTTGGAATA+AGG 0.310958 6:+23840644 None:intergenic
CACAAACTATGTCACATTCT+TGG 0.323808 6:-23842938 MsG0680031642.01.T01:intron
TGCACATTAAGTCATATGAT+TGG 0.371146 6:-23841639 MsG0680031642.01.T01:CDS
GTTGATAATCTGATCTTATA+GGG 0.375737 6:+23839932 None:intergenic
TGTGCTGTTCTTGATGTCAT+TGG 0.379870 6:-23840671 MsG0680031642.01.T01:CDS
TTAACCTTGCTACTATGATA+AGG 0.405817 6:+23843055 None:intergenic
AAAAGTTGGTTATGTGAAAA+GGG 0.420424 6:-23843098 MsG0680031642.01.T01:CDS
TGTGGTGAAGGGACAGTGTC+AGG 0.421729 6:+23842968 None:intergenic
TAACATATGAAGGAAGATAT+TGG 0.443132 6:-23843187 None:intergenic
ATGGATGGGATTGAATATTT+GGG 0.444661 6:-23839975 MsG0680031642.01.T01:CDS
GAGTTATGGCTGTGAATTCA+TGG 0.446167 6:+23840696 None:intergenic
TTACTGAAAACAGTCATTCC+TGG 0.448277 6:+23841679 None:intergenic
GCACATTAAGTCATATGATT+GGG 0.450457 6:-23841638 MsG0680031642.01.T01:CDS
TCATTCCTGGGTGGTTATGA+AGG 0.451907 6:+23841692 None:intergenic
AACAAATTGTGAGAAACATC+AGG 0.461333 6:+23841610 None:intergenic
AAAGAAGAAAATGAAAGTTA+TGG 0.462932 6:-23840035 MsG0680031642.01.T01:CDS
GATGCCAGAAAACTCTCAAA+TGG 0.465281 6:-23839994 MsG0680031642.01.T01:CDS
AAGAACAGCACATGGAGTTA+TGG 0.471493 6:+23840682 None:intergenic
CCAGAAAACTCTCAAATGGA+TGG 0.498542 6:-23839990 MsG0680031642.01.T01:CDS
GAAATTATTTGTCTCATGCA+AGG 0.509216 6:-23843005 MsG0680031642.01.T01:CDS
TGAAGTGCTTTATTAGACAT+TGG 0.510691 6:+23843028 None:intergenic
TCATGCAAGGAAACATTTAA+GGG 0.532868 6:-23842992 MsG0680031642.01.T01:CDS
CCTCCTTATTCCAAAGATGA+TGG 0.537366 6:-23840647 MsG0680031642.01.T01:CDS
ATGGTTGTATATGTGACCCT+TGG 0.543482 6:+23841872 None:intergenic
TACTGGGAAAAGCAGTGTAA+AGG 0.545686 6:+23840597 None:intergenic
TTTGAATACATACATTGAGA+TGG 0.546750 6:+23841580 None:intergenic
TACTGAAAACAGTCATTCCT+GGG 0.547209 6:+23841680 None:intergenic
CATTCCTGGGTGGTTATGAA+GGG 0.552215 6:+23841693 None:intergenic
AGGGCAGTCTCTATAATTGG+AGG 0.559900 6:+23839951 None:intergenic
CAGAAAACTCTCAAATGGAT+GGG 0.570322 6:-23839989 MsG0680031642.01.T01:CDS
AAGAAAATGAAAGTTATGGA+TGG 0.575704 6:-23840031 MsG0680031642.01.T01:CDS
AGGTGTATCTATGAAAATGG+AGG 0.615461 6:-23843164 MsG0680031642.01.T01:CDS
AACATGAAGCCAGAAGATGT+TGG 0.636253 6:-23841947 MsG0680031642.01.T01:CDS
CCATCATCTTTGGAATAAGG+AGG 0.645071 6:+23840647 None:intergenic
CATATGAAGGAAGATATTGG+AGG 0.649850 6:-23843184 MsG0680031642.01.T01:CDS
GAAACCTTATCATAGTAGCA+AGG 0.650637 6:-23843059 MsG0680031642.01.T01:CDS
ATTCCTGGGTGGTTATGAAG+GGG 0.652761 6:+23841694 None:intergenic
ATGACATCAAGAACAGCACA+TGG 0.655518 6:+23840674 None:intergenic
GGTGTATCTATGAAAATGGA+GGG 0.655645 6:-23843163 MsG0680031642.01.T01:CDS
GTATCTATGAAAATGGAGGG+TGG 0.667112 6:-23843160 MsG0680031642.01.T01:CDS
ATTCCCCTTCATAACCACCC+AGG 0.695707 6:-23841697 MsG0680031642.01.T01:CDS
TGAAAACAGTCATTCCTGGG+TGG 0.711444 6:+23841683 None:intergenic
TACAACACTGAAGTGTCACA+TGG 0.758295 6:+23840740 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AATTTCCATTAAAATTTTAT+CGG + Chr6:23842884-23842903 None:intergenic 10.0%
!!! TAACAAATTTTATATCATAA+CGG + Chr6:23842577-23842596 None:intergenic 10.0%
!!! TTATTTTTTTACAATTTGTT+TGG - Chr6:23840575-23840594 MsG0680031642.01.T01:intron 10.0%
!!! TTTAAATTATTCATCATTTT+CGG - Chr6:23841060-23841079 MsG0680031642.01.T01:intron 10.0%
!! AAAATTATCACATTTGTATA+TGG + Chr6:23841278-23841297 None:intergenic 15.0%
!! ATCAATCAATTTATTATCTT+AGG - Chr6:23840436-23840455 MsG0680031642.01.T01:intron 15.0%
!! GAAATTATTTATGATATTAG+AGG + Chr6:23840932-23840951 None:intergenic 15.0%
!! TAAACTATATATATGTATCA+TGG + Chr6:23842600-23842619 None:intergenic 15.0%
!! TGATACATATATATAGTTTA+TGG - Chr6:23842600-23842619 MsG0680031642.01.T01:intron 15.0%
!! TTTATATTACAGTAAAATGT+AGG - Chr6:23841702-23841721 MsG0680031642.01.T01:CDS 15.0%
!!! ATAATTAAGAACATTACTTT+TGG + Chr6:23841143-23841162 None:intergenic 15.0%
!!! ATTTCCATTAAAATTTTATC+GGG + Chr6:23842883-23842902 None:intergenic 15.0%
!!! TATATTTTAGAAATTGAGTA+GGG - Chr6:23840734-23840753 MsG0680031642.01.T01:CDS 15.0%
!!! TCTCTATTTTGAATTTTTTT+AGG - Chr6:23842939-23842958 MsG0680031642.01.T01:CDS 15.0%
!! AAAGAAGAAAATGAAAGTTA+TGG - Chr6:23843093-23843112 MsG0680031642.01.T01:CDS 20.0%
!! ATATACACTAGAAAGATAAA+AGG + Chr6:23840719-23840738 None:intergenic 20.0%
!! ATTAAATTCATCTCAATTCA+TGG - Chr6:23841590-23841609 MsG0680031642.01.T01:intron 20.0%
!! ATTGGTTGAATAAATAGATA+AGG - Chr6:23840958-23840977 MsG0680031642.01.T01:intron 20.0%
!! GAATTGAGATGAATTTAATT+TGG + Chr6:23841589-23841608 None:intergenic 20.0%
!! TATCTATTTATTCAACCAAT+AGG + Chr6:23840958-23840977 None:intergenic 20.0%
!! TGAGTTAAATAATTATAGCA+TGG - Chr6:23842685-23842704 MsG0680031642.01.T01:intron 20.0%
!! TTAAATTCATCTCAATTCAT+GGG - Chr6:23841591-23841610 MsG0680031642.01.T01:intron 20.0%
!! TTGTAACACTAACATATAAT+TGG + Chr6:23840311-23840330 None:intergenic 20.0%
!!! AAAAATAAAGTATTGCTTAC+TGG + Chr6:23842551-23842570 None:intergenic 20.0%
!!! AAAATAAAGTATTGCTTACT+GGG + Chr6:23842550-23842569 None:intergenic 20.0%
!!! AATTTTTAAATGGAAACTAG+AGG + Chr6:23840656-23840675 None:intergenic 20.0%
!!! ATTATTTAACTCACTTTTAG+TGG + Chr6:23842678-23842697 None:intergenic 20.0%
!!! GTATATTTTAGAAATTGAGT+AGG - Chr6:23840733-23840752 MsG0680031642.01.T01:CDS 20.0%
!!! TAATCCCGATAAAATTTTAA+TGG - Chr6:23842876-23842895 MsG0680031642.01.T01:intron 20.0%
!!! TGAAGACTTATGATTTTATA+GGG + Chr6:23842852-23842871 None:intergenic 20.0%
!!! TTATTTAACTCACTTTTAGT+GGG + Chr6:23842677-23842696 None:intergenic 20.0%
!!! TTGAAGACTTATGATTTTAT+AGG + Chr6:23842853-23842872 None:intergenic 20.0%
!!! TTTGAAATTGAGTGTTTAAT+TGG - Chr6:23840244-23840263 MsG0680031642.01.T01:intron 20.0%
! AAGAAAATGAAAGTTATGGA+TGG - Chr6:23843097-23843116 MsG0680031642.01.T01:CDS 25.0%
! AATGTTCATGTAACATGATA+GGG - Chr6:23842651-23842670 MsG0680031642.01.T01:intron 25.0%
! AATTTCGAATCAATATCAGA+CGG + Chr6:23841986-23842005 None:intergenic 25.0%
! ATAAATAATTTCCCTCCTAT+TGG - Chr6:23840940-23840959 MsG0680031642.01.T01:intron 25.0%
! ATCCCTACAAAAAAATTGTA+AGG - Chr6:23840766-23840785 MsG0680031642.01.T01:CDS 25.0%
! ATGATTTCAAATATTGCAGA+TGG - Chr6:23843054-23843073 MsG0680031642.01.T01:CDS 25.0%
! ATTATTCCCAATAATAAGAC+AGG + Chr6:23841839-23841858 None:intergenic 25.0%
! TAATGTTCATGTAACATGAT+AGG - Chr6:23842650-23842669 MsG0680031642.01.T01:intron 25.0%
! TACAAACTACAGTATTATGA+AGG + Chr6:23842912-23842931 None:intergenic 25.0%
! TATTTATTCAACCAATAGGA+GGG + Chr6:23840954-23840973 None:intergenic 25.0%
! TCCTTAAAAAATGTCTTTGA+TGG - Chr6:23842982-23843001 MsG0680031642.01.T01:CDS 25.0%
! TCTACGTGTTCTTTATTATT+GGG + Chr6:23842251-23842270 None:intergenic 25.0%
! TTCTACGTGTTCTTTATTAT+TGG + Chr6:23842252-23842271 None:intergenic 25.0%
! TTTGAATACATACATTGAGA+TGG + Chr6:23841551-23841570 None:intergenic 25.0%
!! AAAAAGTTGGTTATGTGAAA+AGG - Chr6:23840029-23840048 MsG0680031642.01.T01:CDS 25.0%
!! AAAAGTTGGTTATGTGAAAA+GGG - Chr6:23840030-23840049 MsG0680031642.01.T01:CDS 25.0%
!! AAATTTTTGTGTCATGTCTT+TGG - Chr6:23840329-23840348 MsG0680031642.01.T01:intron 25.0%
!! TAAAGTCTAAAATGCAAAGT+TGG + Chr6:23842080-23842099 None:intergenic 25.0%
!!! ATCTAACTTTCTTGTTGTTT+GGG + Chr6:23842037-23842056 None:intergenic 25.0%
!!! ATGTGAATGTGGATTTTTTA+AGG - Chr6:23840386-23840405 MsG0680031642.01.T01:intron 25.0%
!!! ATTTTTTTCCTACCTTCAAA+AGG - Chr6:23841404-23841423 MsG0680031642.01.T01:intron 25.0%
!!! CACCTTACAATTTTTTTGTA+GGG + Chr6:23840771-23840790 None:intergenic 25.0%
!!! TCACCTTACAATTTTTTTGT+AGG + Chr6:23840772-23840791 None:intergenic 25.0%
!!! TCCATCAAAGACATTTTTTA+AGG + Chr6:23842986-23843005 None:intergenic 25.0%
!!! TGGACATGAATTTTAATTCA+TGG + Chr6:23842060-23842079 None:intergenic 25.0%
!!! TTGGTTTGTTTTTTAACCAT+CGG + Chr6:23841124-23841143 None:intergenic 25.0%
AACAAATTGTGAGAAACATC+AGG + Chr6:23841521-23841540 None:intergenic 30.0%
AATGGATGGGATTGAATATT+TGG - Chr6:23843152-23843171 MsG0680031642.01.T01:CDS 30.0%
ATGGATGGGATTGAATATTT+GGG - Chr6:23843153-23843172 MsG0680031642.01.T01:CDS 30.0%
ATGTCTGACTAAATAGAAAG+TGG + Chr6:23842216-23842235 None:intergenic 30.0%
CTATTTATTCAACCAATAGG+AGG + Chr6:23840955-23840974 None:intergenic 30.0%
CTCGAAAATGTGTTTATAAG+AGG + Chr6:23840805-23840824 None:intergenic 30.0%
GAAATTATTTGTCTCATGCA+AGG - Chr6:23840123-23840142 MsG0680031642.01.T01:intron 30.0%
GCACATTAAGTCATATGATT+GGG - Chr6:23841490-23841509 MsG0680031642.01.T01:intron 30.0%
GTTAGACATGTTGAAAAAGT+TGG - Chr6:23840016-23840035 MsG0680031642.01.T01:CDS 30.0%
TATATCCTTAGCAATTGCAT+TGG + Chr6:23841340-23841359 None:intergenic 30.0%
TCATGCAAGGAAACATTTAA+GGG - Chr6:23840136-23840155 MsG0680031642.01.T01:intron 30.0%
TGCACATTAAGTCATATGAT+TGG - Chr6:23841489-23841508 MsG0680031642.01.T01:intron 30.0%
TGTCTGACTAAATAGAAAGT+GGG + Chr6:23842215-23842234 None:intergenic 30.0%
TTAACCTTGCTACTATGATA+AGG + Chr6:23840076-23840095 None:intergenic 30.0%
TTAGTTAGATTATCCACCAT+TGG + Chr6:23840900-23840919 None:intergenic 30.0%
! CATTTTCAAAGAGAATCCAA+GGG - Chr6:23841240-23841259 MsG0680031642.01.T01:intron 30.0%
! TAGCTTTTGCAATTCATCAA+GGG - Chr6:23840515-23840534 MsG0680031642.01.T01:intron 30.0%
! TGAAGTGCTTTATTAGACAT+TGG + Chr6:23840103-23840122 None:intergenic 30.0%
! TGTTGACCTGTCTTATTATT+GGG - Chr6:23841830-23841849 MsG0680031642.01.T01:intron 30.0%
! TTCTCTTTGAAAATGCTTTC+AGG + Chr6:23841235-23841254 None:intergenic 30.0%
!! CATAGTTTGTGAACATTTTG+TGG + Chr6:23840181-23840200 None:intergenic 30.0%
!! GATCTAACTTTCTTGTTGTT+TGG + Chr6:23842038-23842057 None:intergenic 30.0%
!! TTAGCTTTTGCAATTCATCA+AGG - Chr6:23840514-23840533 MsG0680031642.01.T01:intron 30.0%
!!! TGGTTTGTTTTTTAACCATC+GGG + Chr6:23841123-23841142 None:intergenic 30.0%
AAAGGGTCATTGTCAAAAAG+AGG - Chr6:23840047-23840066 MsG0680031642.01.T01:CDS 35.0%
AAATGGAAACTAGAGGAAGA+AGG + Chr6:23840649-23840668 None:intergenic 35.0%
AGGTGTATCTATGAAAATGG+AGG - Chr6:23839964-23839983 MsG0680031642.01.T01:CDS 35.0%
CACAAACTATGTCACATTCT+TGG - Chr6:23840190-23840209 MsG0680031642.01.T01:intron 35.0%
CAGAAAACTCTCAAATGGAT+GGG - Chr6:23843139-23843158 MsG0680031642.01.T01:CDS 35.0%
CTCATGCAAGGAAACATTTA+AGG - Chr6:23840135-23840154 MsG0680031642.01.T01:intron 35.0%
GAAACCTTATCATAGTAGCA+AGG - Chr6:23840069-23840088 MsG0680031642.01.T01:intron 35.0%
GGTGTATCTATGAAAATGGA+GGG - Chr6:23839965-23839984 MsG0680031642.01.T01:CDS 35.0%
GTCTGACTAAATAGAAAGTG+GGG + Chr6:23842214-23842233 None:intergenic 35.0%
GTGTGATTCCATAACAACAA+TGG - Chr6:23842167-23842186 MsG0680031642.01.T01:intron 35.0%
GTTTGTCCTTTCACATTGTT+GGG - Chr6:23840474-23840493 MsG0680031642.01.T01:intron 35.0%
TACTGAAAACAGTCATTCCT+GGG + Chr6:23841451-23841470 None:intergenic 35.0%
TATAGGGCAGTCTCTATAAT+TGG + Chr6:23843183-23843202 None:intergenic 35.0%
TCAGTGTTGTATCCAAAAAC+TGG - Chr6:23842400-23842419 MsG0680031642.01.T01:intron 35.0%
TCATCTCAATTCATGGGATA+AGG - Chr6:23841597-23841616 MsG0680031642.01.T01:CDS 35.0%
TGTTTGTCCTTTCACATTGT+TGG - Chr6:23840473-23840492 MsG0680031642.01.T01:intron 35.0%
TTACTGAAAACAGTCATTCC+TGG + Chr6:23841452-23841471 None:intergenic 35.0%
TTACTTAGTCCAACATCTTC+TGG + Chr6:23841193-23841212 None:intergenic 35.0%
! ATGGGTTAAAATTACGGTAG+CGG - Chr6:23841665-23841684 MsG0680031642.01.T01:CDS 35.0%
! ATGTGTGTCCATTGTTGTTA+TGG + Chr6:23842178-23842197 None:intergenic 35.0%
! CTGTTGACCTGTCTTATTAT+TGG - Chr6:23841829-23841848 MsG0680031642.01.T01:intron 35.0%
! GATTCTCGAAATTTAGAACG+TGG - Chr6:23841959-23841978 MsG0680031642.01.T01:intron 35.0%
! GCATTTTCAAAGAGAATCCA+AGG - Chr6:23841239-23841258 MsG0680031642.01.T01:intron 35.0%
! GTTTTCAGTAAGCTTCTGTT+GGG - Chr6:23841461-23841480 MsG0680031642.01.T01:intron 35.0%
! TGGAGGTGTATCTATGAAAA+TGG - Chr6:23839961-23839980 MsG0680031642.01.T01:CDS 35.0%
! TGTGAACATTTTGTGGTGAA+GGG + Chr6:23840174-23840193 None:intergenic 35.0%
! TGTTTTCAGTAAGCTTCTGT+TGG - Chr6:23841460-23841479 MsG0680031642.01.T01:intron 35.0%
! TTGCCCATGGGTTAAAATTA+CGG - Chr6:23841659-23841678 MsG0680031642.01.T01:CDS 35.0%
! TTGTGAACATTTTGTGGTGA+AGG + Chr6:23840175-23840194 None:intergenic 35.0%
!! CTACCGTAATTTTAACCCAT+GGG + Chr6:23841665-23841684 None:intergenic 35.0%
!! GAATTACTCCTTTTGAAGGT+AGG + Chr6:23841415-23841434 None:intergenic 35.0%
!! GACGATCAAGTTCTGAATTT+CGG + Chr6:23842106-23842125 None:intergenic 35.0%
!! TATGATATTAGAGGTGTCCA+CGG + Chr6:23840923-23840942 None:intergenic 35.0%
!! TTGTGTCATGTCTTTGGAAT+TGG - Chr6:23840335-23840354 MsG0680031642.01.T01:intron 35.0%
!!! ACATGCTATTTTTTGCAGTG+AGG - Chr6:23842329-23842348 MsG0680031642.01.T01:intron 35.0%
AACATGAAGCCAGAAGATGT+TGG - Chr6:23841181-23841200 MsG0680031642.01.T01:intron 40.0%
AAGAACAGCACATGGAGTTA+TGG + Chr6:23842449-23842468 None:intergenic 40.0%
AATGTAGAGCGTGATTTGAG+TGG - Chr6:23840873-23840892 MsG0680031642.01.T01:intron 40.0%
ACAATCTCTGCCATCATCTT+TGG + Chr6:23842494-23842513 None:intergenic 40.0%
ATGACATCAAGAACAGCACA+TGG + Chr6:23842457-23842476 None:intergenic 40.0%
ATGGTTGTATATGTGACCCT+TGG + Chr6:23841259-23841278 None:intergenic 40.0%
CAATGGACACACATCCTATT+TGG - Chr6:23842184-23842203 MsG0680031642.01.T01:intron 40.0%
CATCTTCCCAACAATGTGAA+AGG + Chr6:23840483-23840502 None:intergenic 40.0%
CCAGAAAACTCTCAAATGGA+TGG - Chr6:23843138-23843157 MsG0680031642.01.T01:CDS 40.0%
CCTCCTTATTCCAAAGATGA+TGG - Chr6:23842481-23842500 MsG0680031642.01.T01:intron 40.0%
GAGTTATGGCTGTGAATTCA+TGG + Chr6:23842435-23842454 None:intergenic 40.0%
GATGCCAGAAAACTCTCAAA+TGG - Chr6:23843134-23843153 MsG0680031642.01.T01:CDS 40.0%
GGCTGAACTCTGAATTATCA+TGG - Chr6:23841081-23841100 MsG0680031642.01.T01:intron 40.0%
GTATCTATGAAAATGGAGGG+TGG - Chr6:23839968-23839987 MsG0680031642.01.T01:CDS 40.0%
GTGGATAATCTAACTAACCG+TGG - Chr6:23840903-23840922 MsG0680031642.01.T01:intron 40.0%
GTGTTGTATCCAAAAACTGG+AGG - Chr6:23842403-23842422 MsG0680031642.01.T01:intron 40.0%
GTTCACCAATGCAATTGCTA+AGG - Chr6:23841332-23841351 MsG0680031642.01.T01:intron 40.0%
TACTGGGAAAAGCAGTGTAA+AGG + Chr6:23842534-23842553 None:intergenic 40.0%
TCTTTGTAACACTTGCCCAT+GGG - Chr6:23841647-23841666 MsG0680031642.01.T01:CDS 40.0%
TGCATGTTGTGATGTGAATG+TGG - Chr6:23840375-23840394 MsG0680031642.01.T01:intron 40.0%
TTCTTTGTAACACTTGCCCA+TGG - Chr6:23841646-23841665 MsG0680031642.01.T01:CDS 40.0%
! AGGGGAATTACTCCTTTTGA+AGG + Chr6:23841419-23841438 None:intergenic 40.0%
! CCATCCATTTGAGAGTTTTC+TGG + Chr6:23843141-23843160 None:intergenic 40.0%
! TACAACACTGAAGTGTCACA+TGG + Chr6:23842391-23842410 None:intergenic 40.0%
! TGGATATTGCCTCCAGTTTT+TGG + Chr6:23842415-23842434 None:intergenic 40.0%
! TGTGCTGTTCTTGATGTCAT+TGG - Chr6:23842457-23842476 MsG0680031642.01.T01:intron 40.0%
! TTTTAACCATCGGGCTTCAA+AGG + Chr6:23841114-23841133 None:intergenic 40.0%
!! CCATCATCTTTGGAATAAGG+AGG + Chr6:23842484-23842503 None:intergenic 40.0%
!! CCTCTAAAATTGTTGTACCG+CGG - Chr6:23841775-23841794 MsG0680031642.01.T01:intron 40.0%
!! CTGCCATCATCTTTGGAATA+AGG + Chr6:23842487-23842506 None:intergenic 40.0%
!! GCTACCGTAATTTTAACCCA+TGG + Chr6:23841666-23841685 None:intergenic 40.0%
!! TCTTCTGGCTTCATGTTATC+TGG + Chr6:23841178-23841197 None:intergenic 40.0%
!!! GCTATTTTTTGCAGTGAGGT+TGG - Chr6:23842333-23842352 MsG0680031642.01.T01:intron 40.0%
AACCTCAAGTGTGGTTGCAT+TGG + Chr6:23841737-23841756 None:intergenic 45.0%
ACGCTCTACATTAAGCGTGA+GGG + Chr6:23840865-23840884 None:intergenic 45.0%
AGGGCAGTCTCTATAATTGG+AGG + Chr6:23843180-23843199 None:intergenic 45.0%
ATTCCTGGGTGGTTATGAAG+GGG + Chr6:23841437-23841456 None:intergenic 45.0%
CATTCCTGGGTGGTTATGAA+GGG + Chr6:23841438-23841457 None:intergenic 45.0%
TCATTCCTGGGTGGTTATGA+AGG + Chr6:23841439-23841458 None:intergenic 45.0%
TGAAAACAGTCATTCCTGGG+TGG + Chr6:23841448-23841467 None:intergenic 45.0%
TGATTTGAGTGGTCCAATGG+TGG - Chr6:23840884-23840903 MsG0680031642.01.T01:intron 45.0%
TGGACACACATCCTATTTGG+TGG - Chr6:23842187-23842206 MsG0680031642.01.T01:intron 45.0%
TTCGTTTGCAACTGCAGTTG+TGG + Chr6:23841801-23841820 None:intergenic 45.0%
! CCGCGGTACAACAATTTTAG+AGG + Chr6:23841778-23841797 None:intergenic 45.0%
!! TTCTTTCCTTTGAAGCCCGA+TGG - Chr6:23841105-23841124 MsG0680031642.01.T01:intron 45.0%
!!! ATGTTATTTTAATTTTTAAA+TGG + Chr6:23840666-23840685 None:intergenic 5.0%
ATTCCCCTTCATAACCACCC+AGG - Chr6:23841431-23841450 MsG0680031642.01.T01:intron 50.0%
CACGCTCTACATTAAGCGTG+AGG + Chr6:23840866-23840885 None:intergenic 50.0%
CGACATTGCAACCTCAAGTG+TGG + Chr6:23841746-23841765 None:intergenic 50.0%
CGCTCTACATTAAGCGTGAG+GGG + Chr6:23840864-23840883 None:intergenic 50.0%
GAAAGTGGGGTCCACCAAAT+AGG + Chr6:23842201-23842220 None:intergenic 50.0%
GACCAATGCAACCACACTTG+AGG - Chr6:23841732-23841751 MsG0680031642.01.T01:CDS 50.0%
GCGTGATTTGAGTGGTCCAA+TGG - Chr6:23840881-23840900 MsG0680031642.01.T01:intron 50.0%
TGTGGTGAAGGGACAGTGTC+AGG + Chr6:23840163-23840182 None:intergenic 55.0%
TGCAACTGCAGTTGTGGCCG+CGG + Chr6:23841795-23841814 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
Chr6 gene 23839947 23843203 23839947 ID=MsG0680031642.01;Name=MsG0680031642.01
Chr6 mRNA 23839947 23843203 23839947 ID=MsG0680031642.01.T01;Parent=MsG0680031642.01;Name=MsG0680031642.01.T01;_AED=0.39;_eAED=0.39;_QI=0|0|0|1|1|1|5|0|293
Chr6 exon 23842939 23843203 23842939 ID=MsG0680031642.01.T01:exon:14773;Parent=MsG0680031642.01.T01
Chr6 exon 23841850 23841971 23841850 ID=MsG0680031642.01.T01:exon:14772;Parent=MsG0680031642.01.T01
Chr6 exon 23841593 23841752 23841593 ID=MsG0680031642.01.T01:exon:14771;Parent=MsG0680031642.01.T01
Chr6 exon 23840600 23840803 23840600 ID=MsG0680031642.01.T01:exon:14770;Parent=MsG0680031642.01.T01
Chr6 exon 23839947 23840077 23839947 ID=MsG0680031642.01.T01:exon:14769;Parent=MsG0680031642.01.T01
Chr6 CDS 23842939 23843203 23842939 ID=MsG0680031642.01.T01:cds;Parent=MsG0680031642.01.T01
Chr6 CDS 23841850 23841971 23841850 ID=MsG0680031642.01.T01:cds;Parent=MsG0680031642.01.T01
Chr6 CDS 23841593 23841752 23841593 ID=MsG0680031642.01.T01:cds;Parent=MsG0680031642.01.T01
Chr6 CDS 23840600 23840803 23840600 ID=MsG0680031642.01.T01:cds;Parent=MsG0680031642.01.T01
Chr6 CDS 23839947 23840077 23839947 ID=MsG0680031642.01.T01:cds;Parent=MsG0680031642.01.T01
Gene Sequence

>MsG0680031642.01.T01

ATGAAGGAAGATATTGGAGGTGTATCTATGAAAATGGAGGGTGGTTTAGTAGAAAAAAATGAAGAAAGAGTTAGACATGTTGAAAAAGTTGGTTATGTGAAAAGGGTCATTGTCAAAAAGAGGAAACCTTATCATAGTAGCAAGGTTAAGAAGCCAATGTCTAATAAAGCACTTCAGAAATTATTTGTCTCATGCAAGGAAACATTTAAGGGACCTGACACTGTCCCTTCACCACAAAATGTTCACAAACTATGTCACATTCTTGATAACATGAAGCCAGAAGATGTTGGACTAAGTAAAGATTTGCAGTTCTTCAAACCTGAAAGCATTTTCAAAGAGAATCCAAGGGTCACATATACAACCATATACAAATGTGATAATTTTTCACTATGTATTTTTTTCCTACCTTCAAAAGGAGTAATTCCCCTTCATAACCACCCAGGAATGACTGTTTTCAGTAAGCTTCTGTTGGGACAAATGCACATTAAGTCATATGATTGGGTTGATCCTGATGTTTCTCACAATTTGTTGAAGCAACCATCTCAATTGAGGTTGGCAAAGTTAAAAGCTAATAAAGTGTTCACATCACCATGTGACACTTCAGTGTTGTATCCAAAAACTGGAGGCAATATCCATGAATTCACAGCCATAACTCCATGTGCTGTTCTTGATGTCATTGGACCTCCTTATTCCAAAGATGATGGCAGAGATTGTTCTTACTACAGAGATCACCTTTACACTGCTTTTCCCAATGGAGAAATTGCTGAGTTGAAAGAAGAAAATGAAAGTTATGGATGGTTAGAAGAAATAGAGATGCCAGAAAACTCTCAAATGGATGGGATTGAATATTTGGGTCCTCCAATTATAGAGACTGCCCTATAA
Protein sequence

>MsG0680031642.01.T01

MKEDIGGVSMKMEGGLVEKNEERVRHVEKVGYVKRVIVKKRKPYHSSKVKKPMSNKALQKLFVSCKETFKGPDTVPSPQNVHKLCHILDNMKPEDVGLSKDLQFFKPESIFKENPRVTYTTIYKCDNFSLCIFFLPSKGVIPLHNHPGMTVFSKLLLGQMHIKSYDWVDPDVSHNLLKQPSQLRLAKLKANKVFTSPCDTSVLYPKTGGNIHEFTAITPCAVLDVIGPPYSKDDGRDCSYYRDHLYTAFPNGEIAELKEENESYGWLEEIEMPENSQMDGIEYLGPPIIETAL*