Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380017780.01.T01 | XP_013462130.1 | 95.652 | 138 | 6 | 0 | 1 | 138 | 1 | 138 | 2.00E-92 | 274 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380017780.01.T01 | I3SPV4 | 95.652 | 138 | 6 | 0 | 1 | 138 | 1 | 138 | 9.55e-93 | 274 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0080048401.01 | MsG0380017780.01 | -0.802764 | 4.804650e-49 | 2.373309e-46 |
| MsG0180000453.01 | MsG0380017780.01 | -0.840599 | 7.890641e-58 | 1.129547e-54 |
| MsG0180003155.01 | MsG0380017780.01 | -0.803375 | 3.593047e-49 | 1.802578e-46 |
| MsG0180004458.01 | MsG0380017780.01 | -0.806793 | 6.922952e-50 | 3.791944e-47 |
| MsG0180005613.01 | MsG0380017780.01 | -0.803746 | 3.008921e-49 | 1.524070e-46 |
| MsG0180005758.01 | MsG0380017780.01 | 0.805166 | 1.522362e-49 | 7.997904e-47 |
| MsG0180006239.01 | MsG0380017780.01 | -0.802739 | 4.863893e-49 | 2.400956e-46 |
| MsG0280010888.01 | MsG0380017780.01 | 0.841744 | 3.946276e-58 | 5.853523e-55 |
| MsG0280011309.01 | MsG0380017780.01 | -0.828834 | 7.212684e-55 | 7.251484e-52 |
| MsG0280011372.01 | MsG0380017780.01 | -0.804402 | 2.197478e-49 | 1.131942e-46 |
| MsG0380011662.01 | MsG0380017780.01 | -0.816450 | 5.495063e-52 | 3.894724e-49 |
| MsG0380012251.01 | MsG0380017780.01 | -0.808258 | 3.383139e-50 | 1.925384e-47 |
| MsG0380015349.01 | MsG0380017780.01 | 0.845102 | 5.007437e-59 | 8.255112e-56 |
| MsG0380015501.01 | MsG0380017780.01 | -0.811572 | 6.545625e-51 | 4.066127e-48 |
| MsG0380016463.01 | MsG0380017780.01 | 0.841401 | 4.858291e-58 | 7.130859e-55 |
| MsG0380017253.01 | MsG0380017780.01 | 0.809119 | 2.214947e-50 | 1.289458e-47 |
| MsG0380017385.01 | MsG0380017780.01 | -0.811639 | 6.330514e-51 | 3.939188e-48 |
| MsG0380017780.01 | MsG0480019604.01 | -0.810019 | 1.418865e-50 | 8.459920e-48 |
| MsG0380017780.01 | MsG0480019693.01 | -0.816499 | 5.359418e-52 | 3.803746e-49 |
| MsG0380017780.01 | MsG0480021856.01 | -0.817461 | 3.259102e-52 | 2.375058e-49 |
| MsG0380017780.01 | MsG0480022968.01 | 0.826682 | 2.372434e-54 | 2.240416e-51 |
| MsG0380017780.01 | MsG0480023502.01 | -0.814520 | 1.477947e-51 | 9.939250e-49 |
| MsG0380017780.01 | MsG0480023616.01 | -0.818877 | 1.558157e-52 | 1.180609e-49 |
| MsG0380017780.01 | MsG0480023821.01 | -0.802479 | 5.501693e-49 | 2.697774e-46 |
| MsG0380017780.01 | MsG0580024360.01 | -0.807778 | 4.281235e-50 | 2.405733e-47 |
| MsG0380017780.01 | MsG0580025215.01 | -0.822071 | 2.881583e-53 | 2.386590e-50 |
| MsG0380017780.01 | MsG0580027348.01 | -0.803442 | 3.480080e-49 | 1.748968e-46 |
| MsG0380017780.01 | MsG0580028092.01 | -0.835527 | 1.592975e-56 | 1.953074e-53 |
| MsG0380017780.01 | MsG0580028093.01 | -0.828611 | 8.163619e-55 | 8.155420e-52 |
| MsG0380017780.01 | MsG0580028177.01 | -0.801241 | 9.879104e-49 | 4.694660e-46 |
| MsG0380017780.01 | MsG0580028587.01 | 0.804736 | 1.871876e-49 | 9.726741e-47 |
| MsG0380017780.01 | MsG0580029433.01 | -0.808596 | 2.865279e-50 | 1.645032e-47 |
| MsG0380017780.01 | MsG0680031642.01 | 0.816290 | 5.968358e-52 | 4.212245e-49 |
| MsG0380017780.01 | MsG0680031997.01 | -0.800459 | 1.427087e-48 | 6.648250e-46 |
| MsG0380017780.01 | MsG0680032000.01 | -0.832241 | 1.057530e-55 | 1.175041e-52 |
| MsG0380017780.01 | MsG0680032002.01 | -0.829326 | 5.479024e-55 | 5.590211e-52 |
| MsG0380017780.01 | MsG0680032003.01 | -0.807208 | 5.654284e-50 | 3.130640e-47 |
| MsG0380017780.01 | MsG0680032274.01 | -0.823524 | 1.322411e-53 | 1.141432e-50 |
| MsG0380017780.01 | MsG0680032275.01 | -0.801609 | 8.306737e-49 | 3.983977e-46 |
| MsG0380017780.01 | MsG0680032306.01 | -0.809357 | 1.969479e-50 | 1.153912e-47 |
| MsG0380017780.01 | MsG0680034980.01 | 0.805752 | 1.146847e-49 | 6.117079e-47 |
| MsG0380017780.01 | MsG0680035322.01 | -0.807875 | 4.083019e-50 | 2.300058e-47 |
| MsG0380017780.01 | MsG0680035788.01 | 0.802404 | 5.702529e-49 | 2.791031e-46 |
| MsG0380017780.01 | MsG0780036426.01 | 0.809477 | 1.855632e-50 | 1.090619e-47 |
| MsG0380017780.01 | MsG0780036584.01 | -0.805717 | 1.166784e-49 | 6.217658e-47 |
| MsG0380017780.01 | MsG0780037453.01 | -0.801956 | 7.049966e-49 | 3.411181e-46 |
| MsG0380017780.01 | MsG0780038115.01 | -0.829799 | 4.204154e-55 | 4.349168e-52 |
| MsG0380017780.01 | MsG0780040319.01 | -0.803634 | 3.173989e-49 | 1.603056e-46 |
| MsG0380017780.01 | MsG0880043235.01 | -0.803836 | 2.881761e-49 | 1.463097e-46 |
| MsG0380017780.01 | MsG0880043913.01 | -0.807778 | 4.281235e-50 | 2.405733e-47 |
| MsG0380017780.01 | MsG0880045259.01 | -0.801930 | 7.136632e-49 | 3.450878e-46 |
| MsG0380017780.01 | MsG0880045377.01 | -0.811371 | 7.239668e-51 | 4.473424e-48 |
| MsG0380017780.01 | MsG0880045409.01 | -0.805903 | 1.065912e-49 | 5.707135e-47 |
| MsG0380017780.01 | MsG0880045423.01 | -0.817967 | 2.504865e-52 | 1.850759e-49 |
| MsG0380017780.01 | MsG0880046024.01 | -0.820851 | 5.513710e-53 | 4.413209e-50 |
| MsG0380017780.01 | MsG0880046025.01 | -0.823945 | 1.053528e-53 | 9.202782e-51 |
| MsG0380017780.01 | MsG0880046135.01 | 0.817711 | 2.861925e-52 | 2.099883e-49 |
| MsG0380017780.01 | MsG0880046227.01 | 0.865961 | 4.038496e-65 | 1.338404e-61 |
| MsG0380017780.01 | MsG0880046573.01 | -0.821336 | 4.263045e-53 | 3.458412e-50 |
| MsG0280006486.01 | MsG0380017780.01 | -0.801456 | 8.925969e-49 | 4.264626e-46 |
| MsG0280006587.01 | MsG0380017780.01 | -0.804708 | 1.897798e-49 | 9.853587e-47 |
| MsG0280006813.01 | MsG0380017780.01 | 0.841534 | 4.483860e-58 | 6.608073e-55 |
| MsG0280007036.01 | MsG0380017780.01 | -0.805991 | 1.021535e-49 | 5.482044e-47 |
| MsG0280007227.01 | MsG0380017780.01 | 0.821709 | 3.495816e-53 | 2.865857e-50 |
| MsG0280007755.01 | MsG0380017780.01 | -0.802786 | 4.754452e-49 | 2.349823e-46 |
| MsG0280008939.01 | MsG0380017780.01 | -0.802151 | 6.428176e-49 | 3.125901e-46 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380017780.01.T01 | MTR_3g111970 | 95.652 | 138 | 6 | 0 | 1 | 138 | 1 | 138 | 2.42e-96 | 274 |
| MsG0380017780.01.T01 | MTR_3g111970 | 94.783 | 115 | 6 | 0 | 1 | 115 | 1 | 115 | 1.47e-77 | 225 |
| MsG0380017780.01.T01 | MTR_1g022395 | 60.417 | 144 | 48 | 4 | 1 | 137 | 1 | 142 | 1.21e-52 | 163 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380017780.01.T01 | AT1G19530 | 44.882 | 127 | 54 | 6 | 1 | 126 | 1 | 112 | 1.02e-19 | 79.3 |
| MsG0380017780.01.T01 | AT1G19530 | 44.882 | 127 | 54 | 6 | 1 | 126 | 1 | 112 | 1.02e-19 | 79.3 |
Find 53 sgRNAs with CRISPR-Local
Find 72 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAGAAGAAATTGATGCTTTC+TGG | 0.107507 | 3:+100582336 | MsG0380017780.01.T01:CDS |
| ATTAATTAAGTACCTGATTT+AGG | 0.181404 | 3:-100582208 | None:intergenic |
| CTGAATAGTCCTTGATAAAT+TGG | 0.192807 | 3:-100582402 | None:intergenic |
| GAAAGCATCAATTTCTTCTT+TGG | 0.235405 | 3:-100582333 | None:intergenic |
| CAATTTATCAAGGACTATTC+AGG | 0.271260 | 3:+100582403 | MsG0380017780.01.T01:CDS |
| TTAATTTATCCATAAGGTTT+TGG | 0.305558 | 3:+100583078 | MsG0380017780.01.T01:three_prime_UTR |
| CACGGTATCGTCGTATTTGC+CGG | 0.314261 | 3:-100582541 | None:intergenic |
| TTACATTTATATATTGTAAA+GGG | 0.358760 | 3:-100582970 | None:intergenic |
| AAATAAATACCAAAACCTTA+TGG | 0.361279 | 3:-100583087 | None:intergenic |
| GCAGGTGGACCAAGAGCAAC+TGG | 0.363566 | 3:+100582801 | MsG0380017780.01.T01:intron |
| CGCCCCATGAAGAAATCATT+TGG | 0.393233 | 3:+100582573 | MsG0380017780.01.T01:CDS |
| TTGGTAGGAGCTTCCATCAC+TGG | 0.398603 | 3:-100582842 | None:intergenic |
| CATGCCAAATGATTTCTTCA+TGG | 0.402591 | 3:-100582577 | None:intergenic |
| TCAATCAATGGGTTCTCTAA+TGG | 0.403373 | 3:+100582159 | MsG0380017780.01.T01:exon |
| TTGGAATTAAGAGTGTGATT+TGG | 0.408407 | 3:+100582095 | MsG0380017780.01.T01:five_prime_UTR |
| AAAATGTTAATTTATCCATA+AGG | 0.408580 | 3:+100583072 | MsG0380017780.01.T01:three_prime_UTR |
| TTCTTCATGGGGCGGGCCAA+GGG | 0.427383 | 3:-100582564 | None:intergenic |
| CAGAATCACTTGAAAGGAAT+CGG | 0.429094 | 3:+100582303 | MsG0380017780.01.T01:intron |
| GTTACATTTATATATTGTAA+AGG | 0.436853 | 3:-100582971 | None:intergenic |
| ATGCCAAATGATTTCTTCAT+GGG | 0.446330 | 3:-100582576 | None:intergenic |
| TTTCTTCATGGGGCGGGCCA+AGG | 0.451036 | 3:-100582565 | None:intergenic |
| ATAAATTGGAAATAACTTTG+AGG | 0.453495 | 3:-100582388 | None:intergenic |
| GCAGTATCACGTAGCCAACT+TGG | 0.457996 | 3:+100582877 | MsG0380017780.01.T01:CDS |
| CAGAAACGCCCAGTTGCTCT+TGG | 0.458612 | 3:-100582810 | None:intergenic |
| CATTTATATATTGTAAAGGG+TGG | 0.467372 | 3:-100582967 | None:intergenic |
| CACACAACTGATCCTAAATC+AGG | 0.475780 | 3:+100582196 | MsG0380017780.01.T01:CDS |
| AAGTTATTTCCAATTTATCA+AGG | 0.477495 | 3:+100582393 | MsG0380017780.01.T01:CDS |
| ATTCAGCAGCAATCAATCAA+TGG | 0.478897 | 3:+100582147 | MsG0380017780.01.T01:exon |
| CATGGGGCGGGCCAAGGGCA+CGG | 0.483921 | 3:-100582559 | None:intergenic |
| TTAGATTTAGATAGACCATT+CGG | 0.484528 | 3:-100582942 | None:intergenic |
| TTCAGCAGCAATCAATCAAT+GGG | 0.491514 | 3:+100582148 | MsG0380017780.01.T01:exon |
| AAATGATTTCTTCATGGGGC+GGG | 0.491715 | 3:-100582571 | None:intergenic |
| TGCTTTCTGGAGATCAAAGA+AGG | 0.491783 | 3:+100582349 | MsG0380017780.01.T01:CDS |
| ACGGTATCGTCGTATTTGCC+GGG | 0.502188 | 3:-100582540 | None:intergenic |
| ATACGACGATACCGTGCCCT+TGG | 0.513413 | 3:+100582548 | MsG0380017780.01.T01:CDS |
| GGGTTCTCTAATGGCAGGAT+GGG | 0.519019 | 3:+100582168 | MsG0380017780.01.T01:CDS |
| ATACAAAGAAAGAAAGACAT+TGG | 0.548215 | 3:+100582076 | MsG0380017780.01.T01:five_prime_UTR |
| TGGGTTCTCTAATGGCAGGA+TGG | 0.562729 | 3:+100582167 | MsG0380017780.01.T01:CDS |
| ATATTTCAGAATCACTTGAA+AGG | 0.563841 | 3:+100582297 | MsG0380017780.01.T01:intron |
| TCAATGGGTTCTCTAATGGC+AGG | 0.564446 | 3:+100582163 | MsG0380017780.01.T01:exon |
| CATGAAGAAATCATTTGGCA+TGG | 0.570197 | 3:+100582578 | MsG0380017780.01.T01:CDS |
| CAAATGATTTCTTCATGGGG+CGG | 0.572003 | 3:-100582572 | None:intergenic |
| CAGTATCACGTAGCCAACTT+GGG | 0.576698 | 3:+100582878 | MsG0380017780.01.T01:CDS |
| ATACTGCGATGCATACTTGT+TGG | 0.576932 | 3:-100582861 | None:intergenic |
| TCTGAATGAACCTCCAGTGA+TGG | 0.578917 | 3:+100582829 | MsG0380017780.01.T01:CDS |
| GTAGGAGCTTCCATCACTGG+AGG | 0.595410 | 3:-100582839 | None:intergenic |
| GAATTAGTGCTTGTTCCGAA+TGG | 0.599911 | 3:+100582927 | MsG0380017780.01.T01:CDS |
| TGCCAAATGATTTCTTCATG+GGG | 0.625447 | 3:-100582575 | None:intergenic |
| TCAAAATTAAACACAGGACA+TGG | 0.627591 | 3:+100582905 | MsG0380017780.01.T01:CDS |
| TGCGATGCATACTTGTTGGT+AGG | 0.629639 | 3:-100582857 | None:intergenic |
| GAGATCAAAGAAGGAGACAG+AGG | 0.641594 | 3:+100582358 | MsG0380017780.01.T01:CDS |
| GGATCATCAAAATTAAACAC+AGG | 0.655378 | 3:+100582899 | MsG0380017780.01.T01:CDS |
| CAGGTGGACCAAGAGCAACT+GGG | 0.675150 | 3:+100582802 | MsG0380017780.01.T01:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTACATTTATATATTGTAAA+GGG | - | Chr3:100582973-100582992 | None:intergenic | 10.0% |
| !! | AAAATGTTAATTTATCCATA+AGG | + | Chr3:100583072-100583091 | MsG0380017780.01.T01:three_prime_UTR | 15.0% |
| !! | AATTCATTTCGATATTTAAT+TGG | + | Chr3:100582513-100582532 | MsG0380017780.01.T01:intron | 15.0% |
| !! | CTTAAAAATATGAAGAAAAA+TGG | + | Chr3:100582624-100582643 | MsG0380017780.01.T01:CDS | 15.0% |
| !! | CTTTATATTGAATTTGAATA+TGG | + | Chr3:100582763-100582782 | MsG0380017780.01.T01:intron | 15.0% |
| !! | GTTACATTTATATATTGTAA+AGG | - | Chr3:100582974-100582993 | None:intergenic | 15.0% |
| !! | ATAAATTGGAAATAACTTTG+AGG | - | Chr3:100582391-100582410 | None:intergenic | 20.0% |
| !! | ATTAATTAAGTACCTGATTT+AGG | - | Chr3:100582211-100582230 | None:intergenic | 20.0% |
| !!! | AAGTTATTTCCAATTTATCA+AGG | + | Chr3:100582393-100582412 | MsG0380017780.01.T01:CDS | 20.0% |
| !!! | TGTCATGAATACTTTTAATT+TGG | + | Chr3:100582731-100582750 | MsG0380017780.01.T01:intron | 20.0% |
| !!! | TTAAAAGTATTCATGACAAT+TGG | - | Chr3:100582729-100582748 | None:intergenic | 20.0% |
| !!! | TTAATTTATCCATAAGGTTT+TGG | + | Chr3:100583078-100583097 | MsG0380017780.01.T01:three_prime_UTR | 20.0% |
| ! | AAAATATGAAGAAAAATGGC+TGG | + | Chr3:100582628-100582647 | MsG0380017780.01.T01:CDS | 25.0% |
| ! | AATTTGAATATGGTTGCATT+GGG | + | Chr3:100582773-100582792 | MsG0380017780.01.T01:intron | 25.0% |
| ! | ATACAAAGAAAGAAAGACAT+TGG | + | Chr3:100582076-100582095 | MsG0380017780.01.T01:five_prime_UTR | 25.0% |
| ! | ATATTTCAGAATCACTTGAA+AGG | + | Chr3:100582297-100582316 | MsG0380017780.01.T01:intron | 25.0% |
| ! | CAAAACAAAAATTACATTCG+TGG | - | Chr3:100583001-100583020 | None:intergenic | 25.0% |
| ! | CATTTATATATTGTAAAGGG+TGG | - | Chr3:100582970-100582989 | None:intergenic | 25.0% |
| ! | TTAGATTTAGATAGACCATT+CGG | - | Chr3:100582945-100582964 | None:intergenic | 25.0% |
| AAGAAGAAATTGATGCTTTC+TGG | + | Chr3:100582336-100582355 | MsG0380017780.01.T01:CDS | 30.0% | |
| ATGCCAAATGATTTCTTCAT+GGG | - | Chr3:100582579-100582598 | None:intergenic | 30.0% | |
| CAATTTATCAAGGACTATTC+AGG | + | Chr3:100582403-100582422 | MsG0380017780.01.T01:CDS | 30.0% | |
| CATGGATGTTGACAAAAATA+TGG | + | Chr3:100582596-100582615 | MsG0380017780.01.T01:CDS | 30.0% | |
| CTGAATAGTCCTTGATAAAT+TGG | - | Chr3:100582405-100582424 | None:intergenic | 30.0% | |
| GAATTTGAATATGGTTGCAT+TGG | + | Chr3:100582772-100582791 | MsG0380017780.01.T01:intron | 30.0% | |
| GGATCATCAAAATTAAACAC+AGG | + | Chr3:100582899-100582918 | MsG0380017780.01.T01:CDS | 30.0% | |
| TCAAAATTAAACACAGGACA+TGG | + | Chr3:100582905-100582924 | MsG0380017780.01.T01:CDS | 30.0% | |
| ! | GTTTTCTAACGACTAACAAT+TGG | - | Chr3:100582669-100582688 | None:intergenic | 30.0% |
| ! | TTGGAATTAAGAGTGTGATT+TGG | + | Chr3:100582095-100582114 | MsG0380017780.01.T01:five_prime_UTR | 30.0% |
| !! | GAAAGCATCAATTTCTTCTT+TGG | - | Chr3:100582336-100582355 | None:intergenic | 30.0% |
| !! | TAATTTTGATGATCCCAAGT+TGG | - | Chr3:100582894-100582913 | None:intergenic | 30.0% |
| AAGTCTGCAAGTAGTTGAAT+TGG | - | Chr3:100582703-100582722 | None:intergenic | 35.0% | |
| ATTCAACTACTTGCAGACTT+AGG | + | Chr3:100582703-100582722 | MsG0380017780.01.T01:intron | 35.0% | |
| ATTCAGCAGCAATCAATCAA+TGG | + | Chr3:100582147-100582166 | MsG0380017780.01.T01:exon | 35.0% | |
| CAGAATCACTTGAAAGGAAT+CGG | + | Chr3:100582303-100582322 | MsG0380017780.01.T01:intron | 35.0% | |
| CATGAAGAAATCATTTGGCA+TGG | + | Chr3:100582578-100582597 | MsG0380017780.01.T01:CDS | 35.0% | |
| CATGCCAAATGATTTCTTCA+TGG | - | Chr3:100582580-100582599 | None:intergenic | 35.0% | |
| TGCCAAATGATTTCTTCATG+GGG | - | Chr3:100582578-100582597 | None:intergenic | 35.0% | |
| TTCAGCAGCAATCAATCAAT+GGG | + | Chr3:100582148-100582167 | MsG0380017780.01.T01:exon | 35.0% | |
| TTGTCTTTATGCTCTGTGTT+TGG | + | Chr3:100582254-100582273 | MsG0380017780.01.T01:intron | 35.0% | |
| ! | ATGGCTGGTAAATTTTCTCA+TGG | + | Chr3:100582643-100582662 | MsG0380017780.01.T01:intron | 35.0% |
| ! | TCAATCAATGGGTTCTCTAA+TGG | + | Chr3:100582159-100582178 | MsG0380017780.01.T01:exon | 35.0% |
| AAATGATTTCTTCATGGGGC+GGG | - | Chr3:100582574-100582593 | None:intergenic | 40.0% | |
| ATACTGCGATGCATACTTGT+TGG | - | Chr3:100582864-100582883 | None:intergenic | 40.0% | |
| CAAATGATTTCTTCATGGGG+CGG | - | Chr3:100582575-100582594 | None:intergenic | 40.0% | |
| CACACAACTGATCCTAAATC+AGG | + | Chr3:100582196-100582215 | MsG0380017780.01.T01:CDS | 40.0% | |
| CGATATTTAATTGGACAGCC+CGG | + | Chr3:100582522-100582541 | MsG0380017780.01.T01:intron | 40.0% | |
| GAATTAGTGCTTGTTCCGAA+TGG | + | Chr3:100582927-100582946 | MsG0380017780.01.T01:CDS | 40.0% | |
| ! | TGCTTTCTGGAGATCAAAGA+AGG | + | Chr3:100582349-100582368 | MsG0380017780.01.T01:CDS | 40.0% |
| CAGTATCACGTAGCCAACTT+GGG | + | Chr3:100582878-100582897 | MsG0380017780.01.T01:CDS | 45.0% | |
| CGCCCCATGAAGAAATCATT+TGG | + | Chr3:100582573-100582592 | MsG0380017780.01.T01:CDS | 45.0% | |
| GAGATCAAAGAAGGAGACAG+AGG | + | Chr3:100582358-100582377 | MsG0380017780.01.T01:CDS | 45.0% | |
| TCTGAATGAACCTCCAGTGA+TGG | + | Chr3:100582829-100582848 | MsG0380017780.01.T01:CDS | 45.0% | |
| ! | ATGCTCTGTGTTTGGCTTCA+CGG | + | Chr3:100582262-100582281 | MsG0380017780.01.T01:intron | 45.0% |
| ! | TCAATGGGTTCTCTAATGGC+AGG | + | Chr3:100582163-100582182 | MsG0380017780.01.T01:exon | 45.0% |
| ! | TGCGATGCATACTTGTTGGT+AGG | - | Chr3:100582860-100582879 | None:intergenic | 45.0% |
| ACGGTATCGTCGTATTTGCC+GGG | - | Chr3:100582543-100582562 | None:intergenic | 50.0% | |
| CACGGTATCGTCGTATTTGC+CGG | - | Chr3:100582544-100582563 | None:intergenic | 50.0% | |
| GCAGTATCACGTAGCCAACT+TGG | + | Chr3:100582877-100582896 | MsG0380017780.01.T01:CDS | 50.0% | |
| GGGTTCTCTAATGGCAGGAT+GGG | + | Chr3:100582168-100582187 | MsG0380017780.01.T01:CDS | 50.0% | |
| TGGGTTCTCTAATGGCAGGA+TGG | + | Chr3:100582167-100582186 | MsG0380017780.01.T01:CDS | 50.0% | |
| TTGGTAGGAGCTTCCATCAC+TGG | - | Chr3:100582845-100582864 | None:intergenic | 50.0% | |
| ATACGACGATACCGTGCCCT+TGG | + | Chr3:100582548-100582567 | MsG0380017780.01.T01:CDS | 55.0% | |
| CAGAAACGCCCAGTTGCTCT+TGG | - | Chr3:100582813-100582832 | None:intergenic | 55.0% | |
| CAGGTGGACCAAGAGCAACT+GGG | + | Chr3:100582802-100582821 | MsG0380017780.01.T01:intron | 55.0% | |
| GTAGGAGCTTCCATCACTGG+AGG | - | Chr3:100582842-100582861 | None:intergenic | 55.0% | |
| TGGTTGCATTGGGTGAGTGC+AGG | + | Chr3:100582783-100582802 | MsG0380017780.01.T01:intron | 55.0% | |
| TTGCATTGGGTGAGTGCAGG+TGG | + | Chr3:100582786-100582805 | MsG0380017780.01.T01:intron | 55.0% | |
| GCAGGTGGACCAAGAGCAAC+TGG | + | Chr3:100582801-100582820 | MsG0380017780.01.T01:intron | 60.0% | |
| TTCTTCATGGGGCGGGCCAA+GGG | - | Chr3:100582567-100582586 | None:intergenic | 60.0% | |
| TTTCTTCATGGGGCGGGCCA+AGG | - | Chr3:100582568-100582587 | None:intergenic | 60.0% | |
| CATGGGGCGGGCCAAGGGCA+CGG | - | Chr3:100582562-100582581 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr3 | gene | 100582053 | 100583100 | 100582053 | ID=MsG0380017780.01;Name=MsG0380017780.01 |
| Chr3 | mRNA | 100582053 | 100583100 | 100582053 | ID=MsG0380017780.01.T01;Parent=MsG0380017780.01;Name=MsG0380017780.01.T01;_AED=0.35;_eAED=0.35;_QI=113|1|1|1|0.75|0.6|5|122|144 |
| Chr3 | exon | 100582053 | 100582217 | 100582053 | ID=MsG0380017780.01.T01:exon:2322;Parent=MsG0380017780.01.T01 |
| Chr3 | exon | 100582306 | 100582424 | 100582306 | ID=MsG0380017780.01.T01:exon:2323;Parent=MsG0380017780.01.T01 |
| Chr3 | exon | 100582540 | 100582649 | 100582540 | ID=MsG0380017780.01.T01:exon:2324;Parent=MsG0380017780.01.T01 |
| Chr3 | exon | 100582805 | 100583017 | 100582805 | ID=MsG0380017780.01.T01:exon:2325;Parent=MsG0380017780.01.T01 |
| Chr3 | exon | 100583038 | 100583100 | 100583038 | ID=MsG0380017780.01.T01:exon:2326;Parent=MsG0380017780.01.T01 |
| Chr3 | five_prime_UTR | 100582053 | 100582165 | 100582053 | ID=MsG0380017780.01.T01:five_prime_utr;Parent=MsG0380017780.01.T01 |
| Chr3 | CDS | 100582166 | 100582217 | 100582166 | ID=MsG0380017780.01.T01:cds;Parent=MsG0380017780.01.T01 |
| Chr3 | CDS | 100582306 | 100582424 | 100582306 | ID=MsG0380017780.01.T01:cds;Parent=MsG0380017780.01.T01 |
| Chr3 | CDS | 100582540 | 100582649 | 100582540 | ID=MsG0380017780.01.T01:cds;Parent=MsG0380017780.01.T01 |
| Chr3 | CDS | 100582805 | 100582958 | 100582805 | ID=MsG0380017780.01.T01:cds;Parent=MsG0380017780.01.T01 |
| Chr3 | three_prime_UTR | 100582959 | 100583017 | 100582959 | ID=MsG0380017780.01.T01:three_prime_utr;Parent=MsG0380017780.01.T01 |
| Chr3 | three_prime_UTR | 100583038 | 100583100 | 100583038 | ID=MsG0380017780.01.T01:three_prime_utr;Parent=MsG0380017780.01.T01 |
| Gene Sequence |
| Protein sequence |
