Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsG0680032148.01.T01 | XP_024630883.1 | 65.476 | 84 | 29 | 0 | 2 | 85 | 63 | 146 | 1.08E-32 | 124 |
MsG0680032148.01.T02 | XP_039688015.1 | 72.727 | 132 | 36 | 0 | 2 | 133 | 44 | 175 | 9.22E-62 | 198 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsG0680032148.01.T01 | G7KH87 | 61.176 | 85 | 33 | 0 | 2 | 86 | 98 | 182 | 3.79e-29 | 114 |
MsG0680032148.01.T02 | A0A2Z6PHB9 | 54.545 | 132 | 60 | 0 | 2 | 133 | 3 | 134 | 1.97e-43 | 149 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsG0680032148.01.T01 | MTR_5g085210 | 61.176 | 85 | 33 | 0 | 2 | 86 | 98 | 182 | 9.61e-33 | 114 |
MsG0680032148.01.T01 | MTR_1g088650 | 63.855 | 83 | 30 | 0 | 3 | 85 | 66 | 148 | 1.32e-30 | 107 |
MsG0680032148.01.T01 | MTR_1g074240 | 72.727 | 66 | 18 | 0 | 24 | 89 | 1 | 66 | 1.02e-29 | 101 |
MsG0680032148.01.T01 | MTR_6g016265 | 45.977 | 87 | 47 | 0 | 1 | 87 | 17 | 103 | 6.19e-25 | 90.9 |
MsG0680032148.01.T01 | MTR_1g034430 | 51.190 | 84 | 41 | 0 | 2 | 85 | 74 | 157 | 1.57e-24 | 91.7 |
MsG0680032148.01.T01 | MTR_2g059470 | 65.079 | 63 | 22 | 0 | 24 | 86 | 1 | 63 | 1.94e-24 | 88.6 |
MsG0680032148.01.T01 | MTR_8g031800 | 54.667 | 75 | 34 | 0 | 8 | 82 | 16 | 90 | 7.53e-24 | 87.8 |
MsG0680032148.01.T01 | MTR_1g074090 | 45.349 | 86 | 47 | 0 | 2 | 87 | 60 | 145 | 1.14e-22 | 85.9 |
MsG0680032148.01.T01 | MTR_5g049680 | 44.828 | 87 | 48 | 0 | 2 | 88 | 10 | 96 | 2.32e-22 | 84.0 |
MsG0680032148.01.T01 | MTR_1g099430 | 48.780 | 82 | 40 | 1 | 1 | 80 | 103 | 184 | 2.48e-22 | 86.7 |
MsG0680032148.01.T01 | MTR_8g036780 | 48.750 | 80 | 41 | 0 | 2 | 81 | 13 | 92 | 4.82e-22 | 83.2 |
MsG0680032148.01.T01 | MTR_0015s0120 | 51.282 | 78 | 38 | 0 | 8 | 85 | 278 | 355 | 5.58e-22 | 88.2 |
MsG0680032148.01.T01 | MTR_5g036320 | 45.349 | 86 | 47 | 0 | 2 | 87 | 58 | 143 | 6.98e-21 | 81.3 |
MsG0680032148.01.T01 | MTR_7g013520 | 47.561 | 82 | 43 | 0 | 1 | 82 | 48 | 129 | 1.16e-20 | 81.6 |
MsG0680032148.01.T01 | MTR_5g083200 | 44.048 | 84 | 47 | 0 | 2 | 85 | 77 | 160 | 1.30e-20 | 82.0 |
MsG0680032148.01.T01 | MTR_0002s1220 | 44.048 | 84 | 47 | 0 | 2 | 85 | 77 | 160 | 1.30e-20 | 82.0 |
MsG0680032148.01.T01 | MTR_1g081930 | 42.857 | 91 | 52 | 0 | 2 | 92 | 17 | 107 | 4.21e-20 | 79.0 |
MsG0680032148.01.T01 | MTR_5g034450 | 48.101 | 79 | 41 | 0 | 8 | 86 | 34 | 112 | 4.32e-20 | 78.2 |
MsG0680032148.01.T01 | MTR_8g038340 | 46.250 | 80 | 43 | 0 | 1 | 80 | 167 | 246 | 5.18e-20 | 81.3 |
MsG0680032148.01.T01 | MTR_6g089560 | 45.679 | 81 | 44 | 0 | 2 | 82 | 95 | 175 | 6.97e-20 | 80.9 |
MsG0680032148.01.T01 | MTR_4g046027 | 56.452 | 62 | 27 | 0 | 4 | 65 | 108 | 169 | 8.64e-20 | 79.0 |
MsG0680032148.01.T01 | MTR_4g008270 | 55.738 | 61 | 27 | 0 | 25 | 85 | 12 | 72 | 1.21e-19 | 76.6 |
MsG0680032148.01.T01 | MTR_1g050488 | 42.169 | 83 | 48 | 0 | 3 | 85 | 78 | 160 | 2.04e-19 | 77.8 |
MsG0680032148.01.T01 | MTR_3g116210 | 44.048 | 84 | 47 | 0 | 2 | 85 | 76 | 159 | 2.16e-19 | 78.6 |
MsG0680032148.01.T01 | MTR_3g111390 | 41.667 | 84 | 49 | 0 | 2 | 85 | 77 | 160 | 2.86e-19 | 78.6 |
MsG0680032148.01.T01 | MTR_1g070820 | 41.667 | 84 | 49 | 0 | 2 | 85 | 77 | 160 | 2.86e-19 | 78.6 |
MsG0680032148.01.T01 | MTR_6g453270 | 46.914 | 81 | 43 | 0 | 2 | 82 | 279 | 359 | 4.37e-19 | 80.5 |
MsG0680032148.01.T01 | MTR_1g017840 | 47.436 | 78 | 41 | 0 | 6 | 83 | 61 | 138 | 2.70e-18 | 75.1 |
MsG0680032148.01.T01 | MTR_6g046670 | 46.667 | 75 | 40 | 0 | 2 | 76 | 102 | 176 | 5.13e-18 | 75.1 |
MsG0680032148.01.T01 | MTR_5g037920 | 48.684 | 76 | 38 | 1 | 8 | 83 | 83 | 157 | 7.62e-18 | 75.5 |
MsG0680032148.01.T01 | MTR_4g094370 | 53.125 | 64 | 30 | 0 | 2 | 65 | 14 | 77 | 1.03e-17 | 71.2 |
MsG0680032148.01.T01 | MTR_1g069475 | 41.667 | 84 | 49 | 0 | 2 | 85 | 143 | 226 | 1.14e-17 | 75.1 |
MsG0680032148.01.T01 | MTR_5g075610 | 60.377 | 53 | 21 | 0 | 29 | 81 | 1 | 53 | 1.72e-17 | 71.2 |
MsG0680032148.01.T01 | MTR_1g045340 | 42.683 | 82 | 47 | 0 | 4 | 85 | 65 | 146 | 2.17e-17 | 73.2 |
MsG0680032148.01.T01 | MTR_2g027020 | 45.333 | 75 | 41 | 0 | 2 | 76 | 7 | 81 | 1.33e-16 | 71.2 |
MsG0680032148.01.T01 | MTR_6g033225 | 39.286 | 84 | 51 | 0 | 4 | 87 | 51 | 134 | 3.81e-16 | 68.9 |
MsG0680032148.01.T01 | MTR_7g078610 | 49.231 | 65 | 33 | 0 | 1 | 65 | 29 | 93 | 7.05e-16 | 67.0 |
MsG0680032148.01.T01 | MTR_8g099580 | 42.683 | 82 | 47 | 0 | 2 | 83 | 185 | 266 | 7.20e-16 | 71.2 |
MsG0680032148.01.T01 | MTR_1g054905 | 46.269 | 67 | 36 | 0 | 2 | 68 | 80 | 146 | 1.81e-15 | 67.8 |
MsG0680032148.01.T01 | MTR_1g109000 | 42.683 | 82 | 47 | 0 | 2 | 83 | 5 | 86 | 2.44e-15 | 65.5 |
MsG0680032148.01.T01 | MTR_1g087480 | 56.604 | 53 | 23 | 0 | 2 | 54 | 167 | 219 | 3.50e-15 | 68.2 |
MsG0680032148.01.T01 | MTR_8g098925 | 43.210 | 81 | 32 | 1 | 2 | 82 | 58 | 124 | 3.57e-15 | 67.0 |
MsG0680032148.01.T01 | MTR_8g022750 | 45.349 | 86 | 30 | 3 | 2 | 87 | 184 | 252 | 4.78e-15 | 68.6 |
MsG0680032148.01.T01 | MTR_5g068115 | 54.717 | 53 | 24 | 0 | 2 | 54 | 13 | 65 | 5.02e-15 | 64.3 |
MsG0680032148.01.T01 | MTR_8g031080 | 51.667 | 60 | 29 | 0 | 2 | 61 | 268 | 327 | 5.40e-15 | 68.9 |
MsG0680032148.01.T01 | MTR_4g035890 | 50.909 | 55 | 27 | 0 | 2 | 56 | 93 | 147 | 6.00e-15 | 66.2 |
MsG0680032148.01.T01 | MTR_7g063280 | 43.077 | 65 | 37 | 0 | 23 | 87 | 72 | 136 | 1.64e-14 | 65.5 |
MsG0680032148.01.T01 | MTR_3g462490 | 48.387 | 62 | 32 | 0 | 2 | 63 | 80 | 141 | 1.65e-14 | 67.8 |
MsG0680032148.01.T01 | MTR_6g016355 | 41.892 | 74 | 43 | 0 | 11 | 84 | 104 | 177 | 1.66e-13 | 63.2 |
MsG0680032148.01.T01 | MTR_2g017550 | 40.789 | 76 | 45 | 0 | 1 | 76 | 86 | 161 | 1.82e-13 | 62.8 |
MsG0680032148.01.T01 | MTR_0093s0070 | 50.877 | 57 | 28 | 0 | 26 | 82 | 126 | 182 | 2.04e-13 | 63.2 |
MsG0680032148.01.T01 | MTR_1g022215 | 36.782 | 87 | 55 | 0 | 11 | 97 | 2 | 88 | 3.46e-13 | 60.1 |
MsG0680032148.01.T01 | MTR_2g047100 | 38.824 | 85 | 37 | 1 | 8 | 92 | 3 | 72 | 3.52e-13 | 60.5 |
MsG0680032148.01.T01 | MTR_4g094272 | 45.455 | 66 | 35 | 1 | 2 | 67 | 73 | 137 | 5.46e-13 | 60.8 |
MsG0680032148.01.T01 | MTR_5g056500 | 32.584 | 89 | 60 | 0 | 2 | 90 | 9 | 97 | 1.21e-12 | 59.3 |
MsG0680032148.01.T01 | MTR_8g045330 | 38.824 | 85 | 48 | 1 | 2 | 86 | 76 | 156 | 1.30e-12 | 60.1 |
MsG0680032148.01.T01 | MTR_7g006380 | 49.057 | 53 | 27 | 0 | 2 | 54 | 45 | 97 | 1.99e-12 | 60.1 |
MsG0680032148.01.T01 | MTR_1g018300 | 37.805 | 82 | 45 | 1 | 1 | 82 | 41 | 116 | 2.48e-12 | 60.8 |
MsG0680032148.01.T01 | MTR_8g059135 | 45.763 | 59 | 32 | 0 | 26 | 84 | 31 | 89 | 2.97e-12 | 58.5 |
MsG0680032148.01.T01 | MTR_4g029360 | 40.741 | 81 | 48 | 0 | 2 | 82 | 106 | 186 | 3.14e-12 | 60.5 |
MsG0680032148.01.T01 | MTR_8g079540 | 37.209 | 86 | 54 | 0 | 2 | 87 | 27 | 112 | 4.03e-12 | 58.2 |
MsG0680032148.01.T01 | MTR_3g064060 | 57.143 | 42 | 18 | 0 | 2 | 43 | 16 | 57 | 6.03e-12 | 56.2 |
MsG0680032148.01.T02 | MTR_1g088650 | 62.097 | 124 | 47 | 0 | 3 | 126 | 66 | 189 | 1.34e-46 | 149 |
MsG0680032148.01.T02 | MTR_5g085210 | 56.818 | 132 | 41 | 1 | 2 | 133 | 98 | 213 | 7.96e-45 | 146 |
MsG0680032148.01.T02 | MTR_1g034430 | 55.556 | 108 | 48 | 0 | 2 | 109 | 74 | 181 | 1.51e-37 | 126 |
MsG0680032148.01.T02 | MTR_5g075610 | 60.606 | 99 | 37 | 1 | 29 | 127 | 1 | 97 | 1.10e-36 | 121 |
MsG0680032148.01.T02 | MTR_2g059470 | 68.675 | 83 | 26 | 0 | 24 | 106 | 1 | 83 | 9.72e-35 | 115 |
MsG0680032148.01.T02 | MTR_6g016265 | 44.954 | 109 | 60 | 0 | 1 | 109 | 17 | 125 | 2.61e-30 | 105 |
MsG0680032148.01.T02 | MTR_8g022750 | 48.333 | 120 | 45 | 2 | 2 | 121 | 184 | 286 | 1.64e-29 | 108 |
MsG0680032148.01.T02 | MTR_4g008270 | 58.537 | 82 | 34 | 0 | 25 | 106 | 12 | 93 | 9.05e-28 | 98.6 |
MsG0680032148.01.T02 | MTR_8g031800 | 48.980 | 98 | 49 | 1 | 8 | 105 | 16 | 112 | 6.21e-27 | 97.1 |
MsG0680032148.01.T02 | MTR_1g074240 | 69.355 | 62 | 19 | 0 | 24 | 85 | 1 | 62 | 2.22e-26 | 94.4 |
MsG0680032148.01.T02 | MTR_2g027020 | 42.424 | 132 | 72 | 1 | 2 | 133 | 7 | 134 | 2.56e-26 | 97.8 |
MsG0680032148.01.T02 | MTR_7g063280 | 38.462 | 117 | 69 | 1 | 10 | 126 | 62 | 175 | 2.27e-25 | 94.7 |
MsG0680032148.01.T02 | MTR_5g037920 | 42.520 | 127 | 71 | 2 | 8 | 133 | 83 | 208 | 9.92e-25 | 94.7 |
MsG0680032148.01.T02 | MTR_5g083200 | 40.678 | 118 | 70 | 0 | 2 | 119 | 77 | 194 | 1.34e-24 | 93.6 |
MsG0680032148.01.T02 | MTR_0002s1220 | 40.678 | 118 | 70 | 0 | 2 | 119 | 77 | 194 | 1.34e-24 | 93.6 |
MsG0680032148.01.T02 | MTR_3g116210 | 43.396 | 106 | 60 | 0 | 2 | 107 | 76 | 181 | 4.09e-24 | 92.0 |
MsG0680032148.01.T02 | MTR_6g089560 | 40.741 | 108 | 64 | 0 | 2 | 109 | 95 | 202 | 4.85e-24 | 92.8 |
MsG0680032148.01.T02 | MTR_2g047100 | 43.478 | 115 | 50 | 1 | 8 | 122 | 3 | 102 | 5.23e-24 | 89.4 |
MsG0680032148.01.T02 | MTR_5g049680 | 49.412 | 85 | 43 | 0 | 2 | 86 | 10 | 94 | 1.43e-23 | 88.2 |
MsG0680032148.01.T02 | MTR_3g111390 | 38.983 | 118 | 72 | 0 | 2 | 119 | 77 | 194 | 2.73e-23 | 90.1 |
MsG0680032148.01.T02 | MTR_1g070820 | 38.983 | 118 | 72 | 0 | 2 | 119 | 77 | 194 | 2.73e-23 | 90.1 |
MsG0680032148.01.T02 | MTR_0015s0120 | 54.430 | 79 | 36 | 0 | 8 | 86 | 278 | 356 | 4.25e-23 | 92.8 |
MsG0680032148.01.T02 | MTR_7g006380 | 38.636 | 132 | 54 | 1 | 2 | 133 | 45 | 149 | 4.33e-23 | 89.4 |
MsG0680032148.01.T02 | MTR_1g081930 | 40.179 | 112 | 67 | 0 | 2 | 113 | 17 | 128 | 4.73e-23 | 87.8 |
MsG0680032148.01.T02 | MTR_1g074090 | 47.059 | 85 | 45 | 0 | 2 | 86 | 60 | 144 | 5.11e-23 | 88.2 |
MsG0680032148.01.T02 | MTR_4g029360 | 39.344 | 122 | 74 | 0 | 2 | 123 | 106 | 227 | 5.53e-23 | 90.1 |
MsG0680032148.01.T02 | MTR_5g036320 | 48.864 | 88 | 45 | 0 | 2 | 89 | 58 | 145 | 9.04e-23 | 87.4 |
MsG0680032148.01.T02 | MTR_8g098925 | 39.496 | 119 | 58 | 1 | 2 | 120 | 58 | 162 | 3.49e-22 | 86.3 |
MsG0680032148.01.T02 | MTR_8g036780 | 48.750 | 80 | 41 | 0 | 2 | 81 | 13 | 92 | 5.90e-22 | 84.3 |
MsG0680032148.01.T02 | MTR_1g099430 | 50.000 | 80 | 38 | 1 | 2 | 79 | 104 | 183 | 1.34e-21 | 85.9 |
MsG0680032148.01.T02 | MTR_1g045340 | 39.655 | 116 | 70 | 0 | 4 | 119 | 65 | 180 | 1.65e-21 | 85.1 |
MsG0680032148.01.T02 | MTR_7g013520 | 42.453 | 106 | 59 | 1 | 1 | 104 | 48 | 153 | 1.98e-21 | 85.1 |
MsG0680032148.01.T02 | MTR_6g453270 | 43.000 | 100 | 57 | 0 | 2 | 101 | 279 | 378 | 2.08e-21 | 88.2 |
MsG0680032148.01.T02 | MTR_1g050488 | 46.988 | 83 | 44 | 0 | 7 | 89 | 82 | 164 | 1.32e-20 | 82.4 |
MsG0680032148.01.T02 | MTR_5g034450 | 49.367 | 79 | 40 | 0 | 8 | 86 | 34 | 112 | 2.20e-20 | 80.5 |
MsG0680032148.01.T02 | MTR_8g031080 | 37.879 | 132 | 56 | 2 | 2 | 133 | 268 | 373 | 2.87e-20 | 85.1 |
MsG0680032148.01.T02 | MTR_1g069475 | 38.679 | 106 | 65 | 0 | 2 | 107 | 143 | 248 | 5.87e-20 | 82.4 |
MsG0680032148.01.T02 | MTR_8g038340 | 46.835 | 79 | 42 | 0 | 2 | 80 | 168 | 246 | 9.82e-20 | 82.0 |
MsG0680032148.01.T02 | MTR_8g099580 | 41.905 | 105 | 61 | 0 | 2 | 106 | 185 | 289 | 2.93e-19 | 81.6 |
MsG0680032148.01.T02 | MTR_4g046027 | 56.452 | 62 | 27 | 0 | 4 | 65 | 108 | 169 | 3.65e-19 | 79.0 |
MsG0680032148.01.T02 | MTR_1g017840 | 41.584 | 101 | 59 | 0 | 6 | 106 | 61 | 161 | 5.16e-19 | 78.2 |
MsG0680032148.01.T02 | MTR_3g017480 | 47.872 | 94 | 48 | 1 | 40 | 133 | 1 | 93 | 1.89e-18 | 75.5 |
MsG0680032148.01.T02 | MTR_8g028785 | 37.209 | 129 | 57 | 1 | 2 | 130 | 261 | 365 | 2.07e-18 | 79.7 |
MsG0680032148.01.T02 | MTR_1g018300 | 37.037 | 108 | 62 | 1 | 1 | 108 | 41 | 142 | 3.96e-18 | 77.8 |
MsG0680032148.01.T02 | MTR_4g094370 | 53.125 | 64 | 30 | 0 | 2 | 65 | 14 | 77 | 1.65e-17 | 72.0 |
MsG0680032148.01.T02 | MTR_6g046670 | 46.667 | 75 | 40 | 0 | 2 | 76 | 102 | 176 | 2.26e-17 | 74.7 |
MsG0680032148.01.T02 | MTR_7g082130 | 35.000 | 120 | 55 | 2 | 13 | 132 | 34 | 130 | 3.12e-17 | 72.8 |
MsG0680032148.01.T02 | MTR_6g033225 | 40.476 | 84 | 50 | 0 | 8 | 91 | 55 | 138 | 2.38e-16 | 70.9 |
MsG0680032148.01.T02 | MTR_0093s0070 | 41.250 | 80 | 47 | 0 | 26 | 105 | 126 | 205 | 3.09e-15 | 69.3 |
MsG0680032148.01.T02 | MTR_7g078610 | 49.231 | 65 | 33 | 0 | 1 | 65 | 29 | 93 | 3.24e-15 | 66.6 |
MsG0680032148.01.T02 | MTR_1g054905 | 46.269 | 67 | 36 | 0 | 2 | 68 | 80 | 146 | 1.28e-14 | 66.6 |
MsG0680032148.01.T02 | MTR_1g109000 | 42.683 | 82 | 47 | 0 | 2 | 83 | 5 | 86 | 1.29e-14 | 64.7 |
MsG0680032148.01.T02 | MTR_5g068115 | 55.769 | 52 | 23 | 0 | 2 | 53 | 13 | 64 | 1.46e-14 | 64.3 |
MsG0680032148.01.T02 | MTR_8g059135 | 38.043 | 92 | 57 | 0 | 26 | 117 | 31 | 122 | 1.47e-14 | 65.9 |
MsG0680032148.01.T02 | MTR_1g087480 | 56.604 | 53 | 23 | 0 | 2 | 54 | 167 | 219 | 1.82e-14 | 67.4 |
MsG0680032148.01.T02 | MTR_6g034915 | 29.487 | 156 | 63 | 2 | 8 | 133 | 10 | 148 | 2.69e-14 | 66.2 |
MsG0680032148.01.T02 | MTR_4g035890 | 50.909 | 55 | 27 | 0 | 2 | 56 | 93 | 147 | 3.41e-14 | 65.5 |
MsG0680032148.01.T02 | MTR_6g016355 | 41.892 | 74 | 43 | 0 | 11 | 84 | 104 | 177 | 2.09e-13 | 63.9 |
MsG0680032148.01.T02 | MTR_2g017550 | 41.892 | 74 | 43 | 0 | 2 | 75 | 87 | 160 | 2.32e-13 | 63.5 |
MsG0680032148.01.T02 | MTR_3g462490 | 48.387 | 62 | 32 | 0 | 2 | 63 | 80 | 141 | 3.06e-13 | 65.5 |
MsG0680032148.01.T02 | MTR_8g079540 | 38.043 | 92 | 57 | 0 | 2 | 93 | 27 | 118 | 5.42e-13 | 61.6 |
MsG0680032148.01.T02 | MTR_1g057740 | 35.537 | 121 | 34 | 1 | 13 | 133 | 37 | 113 | 1.45e-12 | 60.8 |
MsG0680032148.01.T02 | MTR_6g045427 | 31.897 | 116 | 51 | 1 | 1 | 116 | 151 | 238 | 1.68e-12 | 62.4 |
MsG0680032148.01.T02 | MTR_4g094272 | 45.455 | 66 | 35 | 1 | 2 | 67 | 73 | 137 | 2.19e-12 | 60.5 |
MsG0680032148.01.T02 | MTR_7g103930 | 52.381 | 63 | 20 | 1 | 70 | 132 | 16 | 68 | 3.16e-12 | 59.7 |
MsG0680032148.01.T02 | MTR_1g022215 | 40.580 | 69 | 41 | 0 | 11 | 79 | 2 | 70 | 6.84e-12 | 57.8 |
MsG0680032148.01.T02 | MTR_8g088220 | 40.789 | 76 | 45 | 0 | 31 | 106 | 2 | 77 | 7.47e-12 | 57.4 |
MsG0680032148.01.T02 | MTR_8g045330 | 41.667 | 72 | 41 | 1 | 2 | 73 | 76 | 146 | 7.52e-12 | 59.3 |
MsG0680032148.01.T02 | MTR_3g064060 | 57.143 | 42 | 18 | 0 | 2 | 43 | 16 | 57 | 2.52e-11 | 55.5 |
MsG0680032148.01.T02 | MTR_5g056500 | 34.568 | 81 | 53 | 0 | 2 | 82 | 9 | 89 | 6.06e-11 | 55.8 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Find 18 sgRNAs with CRISPR-Local
Find 20 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CTAGATCACTACTATGTTCT+AGG | 0.210485 | 6:+35012826 | None:intergenic |
GTTCTCCTATTCCTTGAATA+TGG | 0.337694 | 6:-35013048 | MsG0680032148.01.T01:CDS |
CATATGTCTTCTTGATGATC+AGG | 0.390344 | 6:-35013015 | MsG0680032148.01.T01:CDS |
CTAGAACATAGTAGTGATCT+AGG | 0.417821 | 6:-35012825 | MsG0680032148.01.T01:intron |
ACTCTCATGTCGAGTTCAAT+AGG | 0.422745 | 6:-35012755 | MsG0680032148.01.T01:CDS |
GTCAATACCTACCATATTCA+AGG | 0.449138 | 6:+35013037 | None:intergenic |
ACCTACCATATTCAAGGAAT+AGG | 0.449673 | 6:+35013043 | None:intergenic |
TCATACAGCGTTTCAGTGGT+TGG | 0.473163 | 6:-35012919 | MsG0680032148.01.T01:CDS |
CAATAGGAGGCAAGCTAATG+AGG | 0.501747 | 6:-35012739 | MsG0680032148.01.T01:CDS |
AACGCAATCTACAACAGTCT+TGG | 0.504028 | 6:+35012857 | None:intergenic |
ATGTGGACGAAACTGACATA+TGG | 0.560762 | 6:-35013098 | MsG0680032148.01.T01:CDS |
GTCTTCATACAGCGTTTCAG+TGG | 0.574336 | 6:-35012923 | MsG0680032148.01.T01:CDS |
TCCTATTCCTTGAATATGGT+AGG | 0.612249 | 6:-35013044 | MsG0680032148.01.T01:CDS |
GGACGAAACTGACATATGGC+AGG | 0.625627 | 6:-35013094 | MsG0680032148.01.T01:CDS |
CTCATGTCGAGTTCAATAGG+AGG | 0.645141 | 6:-35012752 | MsG0680032148.01.T01:CDS |
ATATGTCTTCTTGATGATCA+GGG | 0.661137 | 6:-35013014 | MsG0680032148.01.T01:CDS |
CTGTGAAGTTGATGTCAGAG+AGG | 0.687799 | 6:-35012952 | MsG0680032148.01.T01:CDS |
CTGACATCAACTTCACAGAG+AGG | 0.721085 | 6:+35012957 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | TGATAATGTTGATTTTGCTT+TGG | - | Chr6:35012934-35012953 | MsG0680032148.01.T01:CDS | 25.0% |
! | ATATGTCTTCTTGATGATCA+GGG | - | Chr6:35012803-35012822 | MsG0680032148.01.T01:intron | 30.0% |
! | GATTTTGTCATAGTTAAGAC+AGG | - | Chr6:35012827-35012846 | MsG0680032148.01.T01:intron | 30.0% |
ACCTACCATATTCAAGGAAT+AGG | + | Chr6:35012777-35012796 | None:intergenic | 35.0% | |
CTAGAACATAGTAGTGATCT+AGG | - | Chr6:35012992-35013011 | MsG0680032148.01.T01:CDS | 35.0% | |
CTAGATCACTACTATGTTCT+AGG | + | Chr6:35012994-35013013 | None:intergenic | 35.0% | |
GTCAATACCTACCATATTCA+AGG | + | Chr6:35012783-35012802 | None:intergenic | 35.0% | |
GTTCTCCTATTCCTTGAATA+TGG | - | Chr6:35012769-35012788 | MsG0680032148.01.T01:intron | 35.0% | |
TCCTATTCCTTGAATATGGT+AGG | - | Chr6:35012773-35012792 | MsG0680032148.01.T01:intron | 35.0% | |
! | CATATGTCTTCTTGATGATC+AGG | - | Chr6:35012802-35012821 | MsG0680032148.01.T01:intron | 35.0% |
AACGCAATCTACAACAGTCT+TGG | + | Chr6:35012963-35012982 | None:intergenic | 40.0% | |
ACTCTCATGTCGAGTTCAAT+AGG | - | Chr6:35013062-35013081 | MsG0680032148.01.T01:CDS | 40.0% | |
ATGTGGACGAAACTGACATA+TGG | - | Chr6:35012719-35012738 | MsG0680032148.01.T02:CDS | 40.0% | |
CAATAGGAGGCAAGCTAATG+AGG | - | Chr6:35013078-35013097 | MsG0680032148.01.T01:CDS | 45.0% | |
CTCATGTCGAGTTCAATAGG+AGG | - | Chr6:35013065-35013084 | MsG0680032148.01.T01:CDS | 45.0% | |
CTGACATCAACTTCACAGAG+AGG | + | Chr6:35012863-35012882 | None:intergenic | 45.0% | |
GTCTTCATACAGCGTTTCAG+TGG | - | Chr6:35012894-35012913 | MsG0680032148.01.T01:CDS | 45.0% | |
TCATACAGCGTTTCAGTGGT+TGG | - | Chr6:35012898-35012917 | MsG0680032148.01.T01:CDS | 45.0% | |
!! | CTGTGAAGTTGATGTCAGAG+AGG | - | Chr6:35012865-35012884 | MsG0680032148.01.T01:intron | 45.0% |
GGACGAAACTGACATATGGC+AGG | - | Chr6:35012723-35012742 | MsG0680032148.01.T02:CDS | 50.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
Chr6 | gene | 35012719 | 35013120 | 35012719 | ID=MsG0680032148.01;Name=MsG0680032148.01 |
Chr6 | mRNA | 35012724 | 35013120 | 35012724 | ID=MsG0680032148.01.T01;Parent=MsG0680032148.01;Name=MsG0680032148.01.T01;_AED=0.46;_eAED=0.47;_QI=0|0|0|1|0|0|2|0|99 |
Chr6 | exon | 35012724 | 35012778 | 35012724 | ID=MsG0680032148.01.T01:exon:19031;Parent=MsG0680032148.01.T01 |
Chr6 | exon | 35012876 | 35013120 | 35012876 | ID=MsG0680032148.01.T01:exon:19030;Parent=MsG0680032148.01.T01 |
Chr6 | CDS | 35012876 | 35013120 | 35012876 | ID=MsG0680032148.01.T01:cds;Parent=MsG0680032148.01.T01 |
Chr6 | CDS | 35012724 | 35012778 | 35012724 | ID=MsG0680032148.01.T01:cds;Parent=MsG0680032148.01.T01 |
Chr6 | mRNA | 35012719 | 35013120 | 35012719 | ID=MsG0680032148.01.T02;Parent=MsG0680032148.01;Name=MsG0680032148.01.T02;_AED=0.45;_eAED=0.45;_QI=0|-1|0|1|-1|1|1|0|133 |
Chr6 | exon | 35012719 | 35013120 | 35012719 | ID=MsG0680032148.01.T02:exon:19032;Parent=MsG0680032148.01.T02 |
Chr6 | CDS | 35012719 | 35013120 | 35012719 | ID=MsG0680032148.01.T02:cds;Parent=MsG0680032148.01.T02 |
Gene Sequence |
Protein sequence |