Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0680032944.01.T01 | XP_013452243.1 | 89.589 | 365 | 38 | 0 | 1 | 365 | 1 | 365 | 0 | 673 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0680032944.01.T01 | O49279 | 50.13 | 385 | 157 | 8 | 4 | 365 | 2 | 374 | 8.02E-120 | 354 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0680032944.01.T01 | A0A072UA28 | 89.589 | 365 | 38 | 0 | 1 | 365 | 1 | 365 | 0.0 | 673 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0180003240.01 | MsG0680032944.01 | 0.803652 | 3.147885e-49 | 1.590551e-46 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0680032944.01.T01 | MTR_6g049050 | 89.589 | 365 | 38 | 0 | 1 | 365 | 1 | 365 | 0.0 | 673 |
| MsG0680032944.01.T01 | MTR_6g034935 | 66.491 | 379 | 106 | 5 | 7 | 365 | 13 | 390 | 1.58e-177 | 498 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0680032944.01.T01 | AT1G76920 | 50.130 | 385 | 157 | 8 | 4 | 365 | 2 | 374 | 8.17e-121 | 354 |
Find 111 sgRNAs with CRISPR-Local
Find 136 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCAGGATGCCGGGGAGTTTA+AGG | 0.237894 | 6:-53562304 | MsG0680032944.01.T01:CDS |
| GAAAATGAATCCAATCATTT+AGG | 0.289153 | 6:+53562973 | None:intergenic |
| CCCAATCCTTCTTGGGGATT+CGG | 0.290715 | 6:-53562637 | MsG0680032944.01.T01:CDS |
| CCGCGGAGCCCAATCCTTCT+TGG | 0.318214 | 6:-53562645 | MsG0680032944.01.T01:CDS |
| GTAGCTTCCATCACCTTTCC+CGG | 0.319465 | 6:+53562170 | None:intergenic |
| GGGAAGTCGTGGTAAGAGTT+TGG | 0.334533 | 6:+53562853 | None:intergenic |
| CCGATGGACTCATCTACCTT+TGG | 0.341311 | 6:-53562905 | MsG0680032944.01.T01:CDS |
| GGAAACAGGATCTTGATTAT+TGG | 0.343405 | 6:-53562450 | MsG0680032944.01.T01:CDS |
| ACCCACTAACACGCCAATTC+CGG | 0.364258 | 6:-53562818 | MsG0680032944.01.T01:CDS |
| CGATGGACTCATCTACCTTT+GGG | 0.364675 | 6:-53562904 | MsG0680032944.01.T01:CDS |
| AAGGATTGGGCTCCGCGGTT+TGG | 0.368882 | 6:+53562650 | None:intergenic |
| CGTGTGACATGGTCGCGGTT+AGG | 0.374657 | 6:-53562534 | MsG0680032944.01.T01:CDS |
| CGCGGAGCCCAATCCTTCTT+GGG | 0.374785 | 6:-53562644 | MsG0680032944.01.T01:CDS |
| TCGATCTTGACCTAAATGAT+TGG | 0.381179 | 6:-53562983 | MsG0680032944.01.T01:CDS |
| CCGCGGTTTGGAAGGGAGAT+TGG | 0.383793 | 6:+53562662 | None:intergenic |
| GTGTGACATGGTCGCGGTTA+GGG | 0.388238 | 6:-53562533 | MsG0680032944.01.T01:CDS |
| TAGTCCGTGGTGTTGGAAAC+AGG | 0.390983 | 6:-53562464 | MsG0680032944.01.T01:CDS |
| CAGAAAATGATTTGACGAAA+TGG | 0.403529 | 6:+53563134 | None:intergenic |
| AAGGAGGATGGATCCGGAAT+TGG | 0.423366 | 6:+53562805 | None:intergenic |
| GAGTGGAGGAGATGAGGTTG+AGG | 0.424685 | 6:+53563063 | None:intergenic |
| ATCCATCCTCCTTGTCCACC+TGG | 0.426811 | 6:-53562795 | MsG0680032944.01.T01:CDS |
| TTTGCTGTTTATTATTTCTC+CGG | 0.427383 | 6:-53562726 | MsG0680032944.01.T01:CDS |
| AGAGAAAGGGAGAAAGTTGA+GGG | 0.432305 | 6:+53562950 | None:intergenic |
| GTGAGGAGGTTGAGTGGTGG+AGG | 0.432398 | 6:+53563041 | None:intergenic |
| GTTTATGTGCTTTGCAATGT+TGG | 0.433518 | 6:-53562615 | MsG0680032944.01.T01:CDS |
| GAGGTTGAGTGGTGGAGGAG+TGG | 0.435034 | 6:+53563046 | None:intergenic |
| GAGATGAGGTTGAGGAAAGA+AGG | 0.438686 | 6:+53563071 | None:intergenic |
| TACCAGGGATTCGTCTTTGA+AGG | 0.438971 | 6:-53562150 | MsG0680032944.01.T01:CDS |
| GGAAGTCGTGGTAAGAGTTT+GGG | 0.439574 | 6:+53562854 | None:intergenic |
| ACCGAATCCCCAAGAAGGAT+TGG | 0.443999 | 6:+53562636 | None:intergenic |
| CGGTGGATTGATAATATGCC+CGG | 0.448079 | 6:-53562189 | MsG0680032944.01.T01:CDS |
| ATCCGGAATTGGCGTGTTAG+TGG | 0.456291 | 6:+53562816 | None:intergenic |
| GTTGAGTGGTGGAGGAGTGG+AGG | 0.457304 | 6:+53563049 | None:intergenic |
| ATTGGGCTCCGCGGTTTGGA+AGG | 0.457841 | 6:+53562654 | None:intergenic |
| CCAACACCACGGACTATTTG+CGG | 0.472400 | 6:+53562471 | None:intergenic |
| TTTCCATTTGCTCCTCTGAC+GGG | 0.479195 | 6:+53562590 | None:intergenic |
| GCGGTTAGGGAGCGCTGAGA+TGG | 0.483016 | 6:-53562520 | MsG0680032944.01.T01:CDS |
| GAAAGGTGATGGAAGCTACC+AGG | 0.492195 | 6:-53562166 | MsG0680032944.01.T01:CDS |
| GCTCCCGTCAGAGGAGCAAA+TGG | 0.495050 | 6:-53562593 | MsG0680032944.01.T01:CDS |
| CGGAAGAAGCTACTGAAAGA+AGG | 0.496648 | 6:+53562925 | None:intergenic |
| GCAACGATAGCAGACGTGAA+TGG | 0.496698 | 6:-53562698 | MsG0680032944.01.T01:CDS |
| ATTCAGTTAGAACCATGATT+CGG | 0.497995 | 6:+53562748 | None:intergenic |
| CCGAATCCCCAAGAAGGATT+GGG | 0.499959 | 6:+53562637 | None:intergenic |
| GTGGACAAGGAGGATGGATC+CGG | 0.500545 | 6:+53562799 | None:intergenic |
| AAGAAGGAGTGGTGAGTAGG+TGG | 0.502749 | 6:+53563087 | None:intergenic |
| GGAAAGAAGGAGTGGTGAGT+AGG | 0.503744 | 6:+53563084 | None:intergenic |
| AAGAGAAAGGGAGAAAGTTG+AGG | 0.505887 | 6:+53562949 | None:intergenic |
| GTTTCCATTTGCTCCTCTGA+CGG | 0.508802 | 6:+53562589 | None:intergenic |
| GTGGGATCGCAGTGATTCAA+AGG | 0.510595 | 6:-53562223 | MsG0680032944.01.T01:CDS |
| CTTTCAGTAGCTTCTTCCGA+TGG | 0.515499 | 6:-53562921 | MsG0680032944.01.T01:CDS |
| GTGGAGGAGTGGAGGAGATG+AGG | 0.516350 | 6:+53563057 | None:intergenic |
| GCAATGTTGGCTCCCGTCAG+AGG | 0.518318 | 6:-53562602 | MsG0680032944.01.T01:CDS |
| TTGGGCTCCGCGGTTTGGAA+GGG | 0.519252 | 6:+53562655 | None:intergenic |
| ACTGAAAGAAGGGAAGAGAA+AGG | 0.528170 | 6:+53562936 | None:intergenic |
| TCCGGAATTGGCGTGTTAGT+GGG | 0.528696 | 6:+53562817 | None:intergenic |
| CCGCAAATAGTCCGTGGTGT+TGG | 0.529538 | 6:-53562471 | MsG0680032944.01.T01:CDS |
| TCTGCTATCGTTGCTATCAC+CGG | 0.530198 | 6:+53562707 | None:intergenic |
| TGGATGGTGAGGAGGTTGAG+TGG | 0.535467 | 6:+53563035 | None:intergenic |
| GAGGTTGAGGAAAGAAGGAG+TGG | 0.540868 | 6:+53563076 | None:intergenic |
| ATGGTGAGGAGGTTGAGTGG+TGG | 0.542271 | 6:+53563038 | None:intergenic |
| AATATGCCCGGGAAAGGTGA+TGG | 0.548586 | 6:-53562177 | MsG0680032944.01.T01:CDS |
| TAGCTTCCATCACCTTTCCC+GGG | 0.550404 | 6:+53562171 | None:intergenic |
| TCCCTTCAAAGACGAATCCC+TGG | 0.551516 | 6:+53562148 | None:intergenic |
| AACCAGGTGGACAAGGAGGA+TGG | 0.560553 | 6:+53562793 | None:intergenic |
| CGGTTAGGGAGCGCTGAGAT+GGG | 0.562043 | 6:-53562519 | MsG0680032944.01.T01:CDS |
| CGACCATGTCACACGTGACA+TGG | 0.562596 | 6:+53562542 | None:intergenic |
| CTGAAAGAAGGGAAGAGAAA+GGG | 0.564920 | 6:+53562937 | None:intergenic |
| ACGATGGAGTGGGAAGAAGT+TGG | 0.567205 | 6:-53562357 | MsG0680032944.01.T01:CDS |
| CAAAGGGAGATGAGTGGCGG+TGG | 0.568906 | 6:-53562206 | MsG0680032944.01.T01:CDS |
| ACCAGGGATTCGTCTTTGAA+GGG | 0.572111 | 6:-53562149 | MsG0680032944.01.T01:CDS |
| TGGAGTGGGAAGAAGTTGGA+AGG | 0.573251 | 6:-53562353 | MsG0680032944.01.T01:CDS |
| TGTCACACGTGACATGGCCG+TGG | 0.574088 | 6:+53562548 | None:intergenic |
| ATCGAAGAAACAGAGGGTGG+TGG | 0.575721 | 6:+53563001 | None:intergenic |
| CATAAACCGAATCCCCAAGA+AGG | 0.583024 | 6:+53562631 | None:intergenic |
| ATTGATAATATGCCCGGGAA+AGG | 0.584639 | 6:-53562183 | MsG0680032944.01.T01:CDS |
| TGACTCGGTAAACCGAATCA+TGG | 0.585578 | 6:-53562760 | MsG0680032944.01.T01:CDS |
| TGATCTCGGAACGATGGAGT+GGG | 0.595862 | 6:-53562367 | MsG0680032944.01.T01:CDS |
| GGAAGAAGCTACTGAAAGAA+GGG | 0.597554 | 6:+53562926 | None:intergenic |
| CGGCCATGTCACGTGTGACA+TGG | 0.599170 | 6:-53562545 | MsG0680032944.01.T01:CDS |
| TTGATCTCGGAACGATGGAG+TGG | 0.600867 | 6:-53562368 | MsG0680032944.01.T01:CDS |
| AAAACAAAACCAGGTGGACA+AGG | 0.603640 | 6:+53562786 | None:intergenic |
| AGGGATTCGTCTTTGAAGGG+AGG | 0.608916 | 6:-53562146 | MsG0680032944.01.T01:CDS |
| GCGGAGCCCAATCCTTCTTG+GGG | 0.611233 | 6:-53562643 | MsG0680032944.01.T01:CDS |
| TGGGATCGCAGTGATTCAAA+GGG | 0.613907 | 6:-53562222 | MsG0680032944.01.T01:CDS |
| GAGGCTTGATCTCGGAACGA+TGG | 0.616143 | 6:-53562373 | MsG0680032944.01.T01:CDS |
| GAGAAAGGGAGAAAGTTGAG+GGG | 0.620492 | 6:+53562951 | None:intergenic |
| AAACAACTAAACATCTCTGT+CGG | 0.628590 | 6:+53562327 | None:intergenic |
| GGTGGATTGATAATATGCCC+GGG | 0.633529 | 6:-53562188 | MsG0680032944.01.T01:CDS |
| AAAGGTGATGGAAGCTACCA+GGG | 0.634313 | 6:-53562165 | MsG0680032944.01.T01:CDS |
| TATTAATAGCTTCAGCCCAA+AGG | 0.634771 | 6:+53562889 | None:intergenic |
| ACAAGAGACGAGGGAAGTCG+TGG | 0.644268 | 6:+53562842 | None:intergenic |
| TGTCACGTGTGACATGGTCG+CGG | 0.645362 | 6:-53562539 | MsG0680032944.01.T01:CDS |
| ACAAAACCAGGTGGACAAGG+AGG | 0.656033 | 6:+53562789 | None:intergenic |
| CTTCTCGTGTTGTGTTACCA+CGG | 0.660231 | 6:-53562565 | MsG0680032944.01.T01:CDS |
| AAAATTAAAATAGTCGAACA+AGG | 0.661367 | 6:+53562396 | None:intergenic |
| GGTCAAGATCGAAGAAACAG+AGG | 0.665215 | 6:+53562994 | None:intergenic |
| CCAATCTCCCTTCCAAACCG+CGG | 0.670204 | 6:-53562662 | MsG0680032944.01.T01:CDS |
| GTCAAGATCGAAGAAACAGA+GGG | 0.671894 | 6:+53562995 | None:intergenic |
| CCAAAGGTAGATGAGTCCAT+CGG | 0.673207 | 6:+53562905 | None:intergenic |
| GTGATTCAAAGGGAGATGAG+TGG | 0.674393 | 6:-53562212 | MsG0680032944.01.T01:CDS |
| GATTTGACGAAATGGTAAAG+CGG | 0.679921 | 6:+53563142 | None:intergenic |
| GAGTCAACTAAAACAAAACC+AGG | 0.683016 | 6:+53562777 | None:intergenic |
| AAGCGGCCGCAAATAGTCCG+TGG | 0.685022 | 6:-53562477 | MsG0680032944.01.T01:CDS |
| TTAGTGGGTTACAAGAGACG+AGG | 0.688355 | 6:+53562832 | None:intergenic |
| ATTCAAAGGGAGATGAGTGG+CGG | 0.688982 | 6:-53562209 | MsG0680032944.01.T01:CDS |
| CCAAGAAGGATTGGGCTCCG+CGG | 0.690136 | 6:+53562645 | None:intergenic |
| AGATCCTGTTTCCAACACCA+CGG | 0.713429 | 6:+53562460 | None:intergenic |
| TAGTGGGTTACAAGAGACGA+GGG | 0.725328 | 6:+53562833 | None:intergenic |
| AAGATCGAAGAAACAGAGGG+TGG | 0.725781 | 6:+53562998 | None:intergenic |
| TCAACTAAAACAAAACCAGG+TGG | 0.727490 | 6:+53562780 | None:intergenic |
| ATTAAAATAGTCGAACAAGG+CGG | 0.746240 | 6:+53562399 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAATTAAAATAGTCGAACA+AGG | + | Chr6:53562938-53562957 | None:intergenic | 20.0% |
| !!! | TTGTTTTTGATATACTTAAG+CGG | - | Chr6:53562837-53562856 | MsG0680032944.01.T01:CDS | 20.0% |
| ! | GAAAATGAATCCAATCATTT+AGG | + | Chr6:53562361-53562380 | None:intergenic | 25.0% |
| !!! | GTTCGACTATTTTAATTTTG+AGG | - | Chr6:53562939-53562958 | MsG0680032944.01.T01:CDS | 25.0% |
| !!! | TGAAGAATTTTGAAAGTGAT+CGG | + | Chr6:53562223-53562242 | None:intergenic | 25.0% |
| !!! | TTTGCTGTTTATTATTTCTC+CGG | - | Chr6:53562605-53562624 | MsG0680032944.01.T01:CDS | 25.0% |
| AAACAACTAAACATCTCTGT+CGG | + | Chr6:53563007-53563026 | None:intergenic | 30.0% | |
| ATTAAAATAGTCGAACAAGG+CGG | + | Chr6:53562935-53562954 | None:intergenic | 30.0% | |
| ATTCAGTTAGAACCATGATT+CGG | + | Chr6:53562586-53562605 | None:intergenic | 30.0% | |
| CAGAAAATGATTTGACGAAA+TGG | + | Chr6:53562200-53562219 | None:intergenic | 30.0% | |
| !! | AGAGATGTTTAGTTGTTTTC+AGG | - | Chr6:53563009-53563028 | MsG0680032944.01.T01:CDS | 30.0% |
| !!! | TGGTTTTGTTTTAGTTGACT+CGG | - | Chr6:53562556-53562575 | MsG0680032944.01.T01:CDS | 30.0% |
| !!! | TTAATTTTGAGGCTTGATCT+CGG | - | Chr6:53562950-53562969 | MsG0680032944.01.T01:CDS | 30.0% |
| GAGTCAACTAAAACAAAACC+AGG | + | Chr6:53562557-53562576 | None:intergenic | 35.0% | |
| GATTTGACGAAATGGTAAAG+CGG | + | Chr6:53562192-53562211 | None:intergenic | 35.0% | |
| GGAAACAGGATCTTGATTAT+TGG | - | Chr6:53562881-53562900 | MsG0680032944.01.T01:CDS | 35.0% | |
| GTTTATGTGCTTTGCAATGT+TGG | - | Chr6:53562716-53562735 | MsG0680032944.01.T01:CDS | 35.0% | |
| TATTAATAGCTTCAGCCCAA+AGG | + | Chr6:53562445-53562464 | None:intergenic | 35.0% | |
| TCAACTAAAACAAAACCAGG+TGG | + | Chr6:53562554-53562573 | None:intergenic | 35.0% | |
| TCGATCTTGACCTAAATGAT+TGG | - | Chr6:53562348-53562367 | MsG0680032944.01.T01:CDS | 35.0% | |
| ! | ATTTTGTGAAGTGTGTCTTG+TGG | + | Chr6:53562164-53562183 | None:intergenic | 35.0% |
| ! | TTTTGTGAAGTGTGTCTTGT+GGG | + | Chr6:53562163-53562182 | None:intergenic | 35.0% |
| !! | TTTAGTTGTTTTCAGGATGC+CGG | - | Chr6:53563016-53563035 | MsG0680032944.01.T01:CDS | 35.0% |
| !!! | CGGAGATAAGGTTTTTTTCT+CGG | - | Chr6:53563060-53563079 | MsG0680032944.01.T01:CDS | 35.0% |
| AAAACAAAACCAGGTGGACA+AGG | + | Chr6:53562548-53562567 | None:intergenic | 40.0% | |
| AAGAGAAAGGGAGAAAGTTG+AGG | + | Chr6:53562385-53562404 | None:intergenic | 40.0% | |
| ACCAAAAACCTTAAACTCCC+CGG | + | Chr6:53563038-53563057 | None:intergenic | 40.0% | |
| ACTGAAAGAAGGGAAGAGAA+AGG | + | Chr6:53562398-53562417 | None:intergenic | 40.0% | |
| AGAGAAAGGGAGAAAGTTGA+GGG | + | Chr6:53562384-53562403 | None:intergenic | 40.0% | |
| CTGAAAGAAGGGAAGAGAAA+GGG | + | Chr6:53562397-53562416 | None:intergenic | 40.0% | |
| GGAAGAAGCTACTGAAAGAA+GGG | + | Chr6:53562408-53562427 | None:intergenic | 40.0% | |
| GTCAAGATCGAAGAAACAGA+GGG | + | Chr6:53562339-53562358 | None:intergenic | 40.0% | |
| ! | ATTGATAATATGCCCGGGAA+AGG | - | Chr6:53563148-53563167 | MsG0680032944.01.T01:CDS | 40.0% |
| !! | TTAGTTGTTTTCAGGATGCC+GGG | - | Chr6:53563017-53563036 | MsG0680032944.01.T01:CDS | 40.0% |
| !!! | ATTTTTTGTGGTGGATGGTG+AGG | + | Chr6:53562310-53562329 | None:intergenic | 40.0% |
| !!! | GAGTTTAAGGTTTTTGGTGG+CGG | - | Chr6:53563040-53563059 | MsG0680032944.01.T01:CDS | 40.0% |
| AAGATCGAAGAAACAGAGGG+TGG | + | Chr6:53562336-53562355 | None:intergenic | 45.0% | |
| ACCAGGGATTCGTCTTTGAA+GGG | - | Chr6:53563182-53563201 | MsG0680032944.01.T01:CDS | 45.0% | |
| AGATCCTGTTTCCAACACCA+CGG | + | Chr6:53562874-53562893 | None:intergenic | 45.0% | |
| ATTCAAAGGGAGATGAGTGG+CGG | - | Chr6:53563122-53563141 | MsG0680032944.01.T01:CDS | 45.0% | |
| CATAAACCGAATCCCCAAGA+AGG | + | Chr6:53562703-53562722 | None:intergenic | 45.0% | |
| CATCAAAAAGTTGGCGCTGT+GGG | - | Chr6:53563090-53563109 | MsG0680032944.01.T01:CDS | 45.0% | |
| CCAAAGGTAGATGAGTCCAT+CGG | + | Chr6:53562429-53562448 | None:intergenic | 45.0% | |
| CGGAAGAAGCTACTGAAAGA+AGG | + | Chr6:53562409-53562428 | None:intergenic | 45.0% | |
| CTTCTCGTGTTGTGTTACCA+CGG | - | Chr6:53562766-53562785 | MsG0680032944.01.T01:CDS | 45.0% | |
| CTTTCAGTAGCTTCTTCCGA+TGG | - | Chr6:53562410-53562429 | MsG0680032944.01.T01:CDS | 45.0% | |
| GAGAAAGGGAGAAAGTTGAG+GGG | + | Chr6:53562383-53562402 | None:intergenic | 45.0% | |
| GAGATGAGGTTGAGGAAAGA+AGG | + | Chr6:53562263-53562282 | None:intergenic | 45.0% | |
| GGAAGTCGTGGTAAGAGTTT+GGG | + | Chr6:53562480-53562499 | None:intergenic | 45.0% | |
| GGTCAAGATCGAAGAAACAG+AGG | + | Chr6:53562340-53562359 | None:intergenic | 45.0% | |
| GTGATTCAAAGGGAGATGAG+TGG | - | Chr6:53563119-53563138 | MsG0680032944.01.T01:CDS | 45.0% | |
| GTTTCCATTTGCTCCTCTGA+CGG | + | Chr6:53562745-53562764 | None:intergenic | 45.0% | |
| TACCAGGGATTCGTCTTTGA+AGG | - | Chr6:53563181-53563200 | MsG0680032944.01.T01:CDS | 45.0% | |
| TCTGCTATCGTTGCTATCAC+CGG | + | Chr6:53562627-53562646 | None:intergenic | 45.0% | |
| TGGGATCGCAGTGATTCAAA+GGG | - | Chr6:53563109-53563128 | MsG0680032944.01.T01:CDS | 45.0% | |
| TTTCCATTTGCTCCTCTGAC+GGG | + | Chr6:53562744-53562763 | None:intergenic | 45.0% | |
| ! | CGATGGACTCATCTACCTTT+GGG | - | Chr6:53562427-53562446 | MsG0680032944.01.T01:CDS | 45.0% |
| ! | GGCGCAAAGCATCAAAAAGT+TGG | - | Chr6:53563081-53563100 | MsG0680032944.01.T01:CDS | 45.0% |
| !! | AAAGGTGATGGAAGCTACCA+GGG | - | Chr6:53563166-53563185 | MsG0680032944.01.T01:CDS | 45.0% |
| !! | CGGTGGATTGATAATATGCC+CGG | - | Chr6:53563142-53563161 | MsG0680032944.01.T01:CDS | 45.0% |
| !! | GGGGAGTTTAAGGTTTTTGG+TGG | - | Chr6:53563037-53563056 | MsG0680032944.01.T01:CDS | 45.0% |
| !! | GGTGGATTGATAATATGCCC+GGG | - | Chr6:53563143-53563162 | MsG0680032944.01.T01:CDS | 45.0% |
| !! | TAGTGGGTTACAAGAGACGA+GGG | + | Chr6:53562501-53562520 | None:intergenic | 45.0% |
| !! | TAGTTGTTTTCAGGATGCCG+GGG | - | Chr6:53563018-53563037 | MsG0680032944.01.T01:CDS | 45.0% |
| !! | TGACTCGGTAAACCGAATCA+TGG | - | Chr6:53562571-53562590 | MsG0680032944.01.T01:CDS | 45.0% |
| !! | TTAGTGGGTTACAAGAGACG+AGG | + | Chr6:53562502-53562521 | None:intergenic | 45.0% |
| !!! | AGAGGGTGGTGGATTTTTTG+TGG | + | Chr6:53562322-53562341 | None:intergenic | 45.0% |
| !!! | GGTGGATTTTTTGTGGTGGA+TGG | + | Chr6:53562315-53562334 | None:intergenic | 45.0% |
| AAGAAGGAGTGGTGAGTAGG+TGG | + | Chr6:53562247-53562266 | None:intergenic | 50.0% | |
| AAGGAGGATGGATCCGGAAT+TGG | + | Chr6:53562529-53562548 | None:intergenic | 50.0% | |
| AATATGCCCGGGAAAGGTGA+TGG | - | Chr6:53563154-53563173 | MsG0680032944.01.T01:CDS | 50.0% | |
| ACAAAACCAGGTGGACAAGG+AGG | + | Chr6:53562545-53562564 | None:intergenic | 50.0% | |
| ACCCACTAACACGCCAATTC+CGG | - | Chr6:53562513-53562532 | MsG0680032944.01.T01:CDS | 50.0% | |
| ACCGAATCCCCAAGAAGGAT+TGG | + | Chr6:53562698-53562717 | None:intergenic | 50.0% | |
| ACGATGGAGTGGGAAGAAGT+TGG | - | Chr6:53562974-53562993 | MsG0680032944.01.T01:CDS | 50.0% | |
| ATCCGGAATTGGCGTGTTAG+TGG | + | Chr6:53562518-53562537 | None:intergenic | 50.0% | |
| ATCGAAGAAACAGAGGGTGG+TGG | + | Chr6:53562333-53562352 | None:intergenic | 50.0% | |
| CCCAATCCTTCTTGGGGATT+CGG | - | Chr6:53562694-53562713 | MsG0680032944.01.T01:CDS | 50.0% | |
| CCGAATCCCCAAGAAGGATT+GGG | + | Chr6:53562697-53562716 | None:intergenic | 50.0% | |
| GAGGTTGAGGAAAGAAGGAG+TGG | + | Chr6:53562258-53562277 | None:intergenic | 50.0% | |
| GCAACGATAGCAGACGTGAA+TGG | - | Chr6:53562633-53562652 | MsG0680032944.01.T01:CDS | 50.0% | |
| GCATCAAAAAGTTGGCGCTG+TGG | - | Chr6:53563089-53563108 | MsG0680032944.01.T01:CDS | 50.0% | |
| GGAAAGAAGGAGTGGTGAGT+AGG | + | Chr6:53562250-53562269 | None:intergenic | 50.0% | |
| GGGAAGTCGTGGTAAGAGTT+TGG | + | Chr6:53562481-53562500 | None:intergenic | 50.0% | |
| GTAGCTTCCATCACCTTTCC+CGG | + | Chr6:53563164-53563183 | None:intergenic | 50.0% | |
| GTGGGATCGCAGTGATTCAA+AGG | - | Chr6:53563108-53563127 | MsG0680032944.01.T01:CDS | 50.0% | |
| TAGCTTCCATCACCTTTCCC+GGG | + | Chr6:53563163-53563182 | None:intergenic | 50.0% | |
| TCCCTTCAAAGACGAATCCC+TGG | + | Chr6:53563186-53563205 | None:intergenic | 50.0% | |
| TCCGGAATTGGCGTGTTAGT+GGG | + | Chr6:53562517-53562536 | None:intergenic | 50.0% | |
| TGATCTCGGAACGATGGAGT+GGG | - | Chr6:53562964-53562983 | MsG0680032944.01.T01:CDS | 50.0% | |
| TGGAGTGGGAAGAAGTTGGA+AGG | - | Chr6:53562978-53562997 | MsG0680032944.01.T01:CDS | 50.0% | |
| TTGATCTCGGAACGATGGAG+TGG | - | Chr6:53562963-53562982 | MsG0680032944.01.T01:CDS | 50.0% | |
| ! | AGGGATTCGTCTTTGAAGGG+AGG | - | Chr6:53563185-53563204 | MsG0680032944.01.T01:CDS | 50.0% |
| ! | CCAACACCACGGACTATTTG+CGG | + | Chr6:53562863-53562882 | None:intergenic | 50.0% |
| ! | CCGATGGACTCATCTACCTT+TGG | - | Chr6:53562426-53562445 | MsG0680032944.01.T01:CDS | 50.0% |
| ! | TAGTCCGTGGTGTTGGAAAC+AGG | - | Chr6:53562867-53562886 | MsG0680032944.01.T01:CDS | 50.0% |
| !! | GAAAGGTGATGGAAGCTACC+AGG | - | Chr6:53563165-53563184 | MsG0680032944.01.T01:CDS | 50.0% |
| !! | GCCGGGGAGTTTAAGGTTTT+TGG | - | Chr6:53563034-53563053 | MsG0680032944.01.T01:CDS | 50.0% |
| !!! | GGGTGGTGGATTTTTTGTGG+TGG | + | Chr6:53562319-53562338 | None:intergenic | 50.0% |
| !!! | GGTTTTTGGTGGCGGAGATA+AGG | - | Chr6:53563048-53563067 | MsG0680032944.01.T01:CDS | 50.0% |
| !!! | TTTTGTGGTGGATGGTGAGG+AGG | + | Chr6:53562307-53562326 | None:intergenic | 50.0% |
| AACCAGGTGGACAAGGAGGA+TGG | + | Chr6:53562541-53562560 | None:intergenic | 55.0% | |
| ACAAGAGACGAGGGAAGTCG+TGG | + | Chr6:53562492-53562511 | None:intergenic | 55.0% | |
| ATCCATCCTCCTTGTCCACC+TGG | - | Chr6:53562536-53562555 | MsG0680032944.01.T01:CDS | 55.0% | |
| ATGGTGAGGAGGTTGAGTGG+TGG | + | Chr6:53562296-53562315 | None:intergenic | 55.0% | |
| CCAATCTCCCTTCCAAACCG+CGG | - | Chr6:53562669-53562688 | MsG0680032944.01.T01:CDS | 55.0% | |
| CCGCAAATAGTCCGTGGTGT+TGG | - | Chr6:53562860-53562879 | MsG0680032944.01.T01:CDS | 55.0% | |
| CGACCATGTCACACGTGACA+TGG | + | Chr6:53562792-53562811 | None:intergenic | 55.0% | |
| GAGGCTTGATCTCGGAACGA+TGG | - | Chr6:53562958-53562977 | MsG0680032944.01.T01:CDS | 55.0% | |
| GAGTGGAGGAGATGAGGTTG+AGG | + | Chr6:53562271-53562290 | None:intergenic | 55.0% | |
| GTGGACAAGGAGGATGGATC+CGG | + | Chr6:53562535-53562554 | None:intergenic | 55.0% | |
| GTGTGACATGGTCGCGGTTA+GGG | - | Chr6:53562798-53562817 | MsG0680032944.01.T01:CDS | 55.0% | |
| TCAGGATGCCGGGGAGTTTA+AGG | - | Chr6:53563027-53563046 | MsG0680032944.01.T01:CDS | 55.0% | |
| TGGATGGTGAGGAGGTTGAG+TGG | + | Chr6:53562299-53562318 | None:intergenic | 55.0% | |
| TGTCACGTGTGACATGGTCG+CGG | - | Chr6:53562792-53562811 | MsG0680032944.01.T01:CDS | 55.0% | |
| AAGCGGCCGCAAATAGTCCG+TGG | - | Chr6:53562854-53562873 | MsG0680032944.01.T01:CDS | 60.0% | |
| AAGGATTGGGCTCCGCGGTT+TGG | + | Chr6:53562684-53562703 | None:intergenic | 60.0% | |
| CAAAGGGAGATGAGTGGCGG+TGG | - | Chr6:53563125-53563144 | MsG0680032944.01.T01:CDS | 60.0% | |
| CCAAGAAGGATTGGGCTCCG+CGG | + | Chr6:53562689-53562708 | None:intergenic | 60.0% | |
| CGCGGAGCCCAATCCTTCTT+GGG | - | Chr6:53562687-53562706 | MsG0680032944.01.T01:CDS | 60.0% | |
| CGGCCATGTCACGTGTGACA+TGG | - | Chr6:53562786-53562805 | MsG0680032944.01.T01:CDS | 60.0% | |
| CGTGTGACATGGTCGCGGTT+AGG | - | Chr6:53562797-53562816 | MsG0680032944.01.T01:CDS | 60.0% | |
| GCGGAGCCCAATCCTTCTTG+GGG | - | Chr6:53562688-53562707 | MsG0680032944.01.T01:CDS | 60.0% | |
| GCTCCCGTCAGAGGAGCAAA+TGG | - | Chr6:53562738-53562757 | MsG0680032944.01.T01:CDS | 60.0% | |
| GTGAGGAGGTTGAGTGGTGG+AGG | + | Chr6:53562293-53562312 | None:intergenic | 60.0% | |
| GTGGAGGAGTGGAGGAGATG+AGG | + | Chr6:53562277-53562296 | None:intergenic | 60.0% | |
| TGTCACACGTGACATGGCCG+TGG | + | Chr6:53562786-53562805 | None:intergenic | 60.0% | |
| ! | ATTGGGCTCCGCGGTTTGGA+AGG | + | Chr6:53562680-53562699 | None:intergenic | 60.0% |
| ! | CCGCGGTTTGGAAGGGAGAT+TGG | + | Chr6:53562672-53562691 | None:intergenic | 60.0% |
| ! | GAGGTTGAGTGGTGGAGGAG+TGG | + | Chr6:53562288-53562307 | None:intergenic | 60.0% |
| ! | GTTGAGTGGTGGAGGAGTGG+AGG | + | Chr6:53562285-53562304 | None:intergenic | 60.0% |
| ! | TTGGGCTCCGCGGTTTGGAA+GGG | + | Chr6:53562679-53562698 | None:intergenic | 60.0% |
| !! | CGGTTAGGGAGCGCTGAGAT+GGG | - | Chr6:53562812-53562831 | MsG0680032944.01.T01:CDS | 60.0% |
| !! | GCAATGTTGGCTCCCGTCAG+AGG | - | Chr6:53562729-53562748 | MsG0680032944.01.T01:CDS | 60.0% |
| CCGCGGAGCCCAATCCTTCT+TGG | - | Chr6:53562686-53562705 | MsG0680032944.01.T01:CDS | 65.0% | |
| !! | GCGGTTAGGGAGCGCTGAGA+TGG | - | Chr6:53562811-53562830 | MsG0680032944.01.T01:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr6 | gene | 53562128 | 53563225 | 53562128 | ID=MsG0680032944.01;Name=MsG0680032944.01 |
| Chr6 | mRNA | 53562128 | 53563225 | 53562128 | ID=MsG0680032944.01.T01;Parent=MsG0680032944.01;Name=MsG0680032944.01.T01;_AED=0.22;_eAED=0.22;_QI=0|-1|0|1|-1|1|1|0|365 |
| Chr6 | exon | 53562128 | 53563225 | 53562128 | ID=MsG0680032944.01.T01:exon:9498;Parent=MsG0680032944.01.T01 |
| Chr6 | CDS | 53562128 | 53563225 | 53562128 | ID=MsG0680032944.01.T01:cds;Parent=MsG0680032944.01.T01 |
| Gene Sequence |
| Protein sequence |
