Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0680032955.01.T01 | XP_013452215.1 | 96.307 | 352 | 5 | 3 | 1 | 347 | 1 | 349 | 0 | 671 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0680032955.01.T01 | Q9MBA2 | 80.923 | 325 | 38 | 2 | 24 | 347 | 25 | 326 | 6.02E-176 | 494 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0680032955.01.T01 | A0A072UAX9 | 96.307 | 352 | 5 | 3 | 1 | 347 | 1 | 349 | 0.0 | 671 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0180001609.01 | MsG0680032955.01 | 0.809798 | 1.583422e-50 | 9.386238e-48 |
| MsG0280011273.01 | MsG0680032955.01 | 0.811830 | 5.754527e-51 | 3.599071e-48 |
| MsG0380014297.01 | MsG0680032955.01 | -0.807165 | 5.776215e-50 | 3.194458e-47 |
| MsG0380014331.01 | MsG0680032955.01 | 0.806298 | 8.804035e-50 | 4.761538e-47 |
| MsG0680032955.01 | MsG0780040603.01 | 0.843758 | 1.150430e-58 | 1.818139e-55 |
| MsG0680032955.01 | MsG0880044547.01 | -0.846423 | 2.192412e-59 | 3.771899e-56 |
| MsG0680032955.01 | MsG0880046054.01 | 0.813428 | 2.573091e-51 | 1.679869e-48 |
| MsG0680032955.01 | MsG0880046695.01 | 0.816425 | 5.566206e-52 | 3.942596e-49 |
| MsG0380015014.01 | MsG0680032955.01 | 0.807887 | 4.057159e-50 | 2.286282e-47 |
| MsG0280008081.01 | MsG0680032955.01 | 0.809696 | 1.665241e-50 | 9.844686e-48 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0680032955.01.T01 | MTR_6g048300 | 96.307 | 352 | 5 | 3 | 1 | 347 | 1 | 349 | 0.0 | 671 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0680032955.01.T01 | AT5G24020 | 80.923 | 325 | 38 | 2 | 24 | 347 | 25 | 326 | 6.14e-177 | 494 |
Find 132 sgRNAs with CRISPR-Local
Find 151 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGTTGGAGTGTGATGGGATT+AGG | 0.203845 | 6:-53793686 | MsG0680032955.01.T01:CDS |
| GCCTCCTACTTTGGCTGGTT+TGG | 0.227893 | 6:-53793493 | MsG0680032955.01.T01:CDS |
| GGGTTTGGGTTTGGGGAATG+TGG | 0.249661 | 6:+53794328 | None:intergenic |
| CCAATAGGTAATTTAGATCT+AGG | 0.260628 | 6:+53793975 | None:intergenic |
| AGGGGTTTCGCCGGAGAGTT+GGG | 0.267688 | 6:+53794262 | None:intergenic |
| CCTAGATCTAAATTACCTAT+TGG | 0.278293 | 6:-53793975 | MsG0680032955.01.T01:CDS |
| TTGAGATTGGTGGTGGTGCC+GGG | 0.299756 | 6:+53794389 | None:intergenic |
| TCTAAATTACCTATTGGATT+TGG | 0.301556 | 6:-53793969 | MsG0680032955.01.T01:CDS |
| GTTGGAGTGTGATGGGATTA+GGG | 0.327318 | 6:-53793685 | MsG0680032955.01.T01:CDS |
| GGGTTTGGGGAATGTGGGAG+AGG | 0.332273 | 6:+53794334 | None:intergenic |
| GATGGGTGATTGAGGGGAAA+TGG | 0.335770 | 6:+53794363 | None:intergenic |
| AACTCCAGTTCCACGGGTTC+TGG | 0.341964 | 6:-53793849 | MsG0680032955.01.T01:CDS |
| TTTGAGATTGGTGGTGGTGC+CGG | 0.343813 | 6:+53794388 | None:intergenic |
| CGGAGGATAGTGAGGTTATA+AGG | 0.346345 | 6:-53793551 | MsG0680032955.01.T01:CDS |
| CGCCGGAGAGTTGGGGTTTG+CGG | 0.359616 | 6:+53794270 | None:intergenic |
| GGATAGTATGCAAGCTGTTA+TGG | 0.362457 | 6:-53793436 | MsG0680032955.01.T01:CDS |
| GTTAGGACGGATATGATTAA+AGG | 0.362839 | 6:-53793639 | MsG0680032955.01.T01:CDS |
| ACAGCCAGAACCCGTGGAAC+TGG | 0.365720 | 6:+53793845 | None:intergenic |
| ATGGGTGATTGAGGGGAAAT+GGG | 0.374187 | 6:+53794364 | None:intergenic |
| GAGGGGTTTCGCCGGAGAGT+TGG | 0.381496 | 6:+53794261 | None:intergenic |
| TTTGAATAAGCCTCCTACTT+TGG | 0.386067 | 6:-53793502 | MsG0680032955.01.T01:CDS |
| AATAAGCCTCCTACTTTGGC+TGG | 0.388357 | 6:-53793498 | MsG0680032955.01.T01:CDS |
| GGTTTGGGTTTGGGGAATGT+GGG | 0.391660 | 6:+53794329 | None:intergenic |
| TCCCTCAAAGCAGTTATATC+TGG | 0.394923 | 6:+53793729 | None:intergenic |
| ATATTAAGATGATAGTGAAT+AGG | 0.397168 | 6:-53793662 | MsG0680032955.01.T01:CDS |
| CAACAAAATCCCTTCTTCAA+TGG | 0.399116 | 6:-53794295 | MsG0680032955.01.T01:CDS |
| GGAGATAAAACCGGTGGAAA+TGG | 0.404981 | 6:-53793903 | MsG0680032955.01.T01:CDS |
| ATCAAAACCGCTTCATTAGC+AGG | 0.415640 | 6:+53793759 | None:intergenic |
| CGACGACGGAGAAGCCTAAA+CGG | 0.416599 | 6:+53794162 | None:intergenic |
| GCCGTTGCTTGGTGTTATAC+CGG | 0.418035 | 6:-53793571 | MsG0680032955.01.T01:CDS |
| GACTCGATCAAGCTTTGGTT+AGG | 0.421392 | 6:-53794040 | MsG0680032955.01.T01:CDS |
| AACCCTGCATCGATCCCTGC+TGG | 0.422828 | 6:+53793798 | None:intergenic |
| GGAACTGGAACCAATGGTTC+TGG | 0.423597 | 6:-53793876 | MsG0680032955.01.T01:CDS |
| AAATTACCTATTGGATTTGG+TGG | 0.424983 | 6:-53793966 | MsG0680032955.01.T01:CDS |
| TATTAAGATGATAGTGAATA+GGG | 0.429738 | 6:-53793661 | MsG0680032955.01.T01:CDS |
| GGGGAAATGGGATTTGAGAT+TGG | 0.429840 | 6:+53794376 | None:intergenic |
| TGCCCAGCAGGGATCGATGC+AGG | 0.430002 | 6:-53793801 | MsG0680032955.01.T01:CDS |
| ATCCTGATCGATTGCCCAGC+AGG | 0.431248 | 6:-53793813 | MsG0680032955.01.T01:CDS |
| CAAGACCTAGTAAAAGGTCT+AGG | 0.433285 | 6:+53794111 | None:intergenic |
| GGGATGGAGATGGGTGATTG+AGG | 0.434732 | 6:+53794355 | None:intergenic |
| TTGGATGTGCAAGAGATGTT+GGG | 0.436831 | 6:-53793597 | MsG0680032955.01.T01:CDS |
| GGATGGAGATGGGTGATTGA+GGG | 0.437119 | 6:+53794356 | None:intergenic |
| CGCCAGATATAACTGCTTTG+AGG | 0.442377 | 6:-53793731 | MsG0680032955.01.T01:CDS |
| GGTTTGGGGAATGTGGGAGA+GGG | 0.445213 | 6:+53794335 | None:intergenic |
| TCCCTGCTGGGCAATCGATC+AGG | 0.449876 | 6:+53793811 | None:intergenic |
| TTCCACGGGTTCTGGCTGTC+CGG | 0.454116 | 6:-53793841 | MsG0680032955.01.T01:CDS |
| AAAACCGGTGGAAATGGAAA+TGG | 0.458507 | 6:-53793897 | MsG0680032955.01.T01:CDS |
| GGTGGAAATGGAAATGGAAC+TGG | 0.459176 | 6:-53793891 | MsG0680032955.01.T01:CDS |
| TGCTTGGAGACTTGTGGAGC+AGG | 0.462222 | 6:-53793457 | MsG0680032955.01.T01:CDS |
| AGATGATAGTGAATAGGGTT+AGG | 0.464845 | 6:-53793656 | MsG0680032955.01.T01:CDS |
| ATGTGGGAGAGGGATGGAGA+TGG | 0.467686 | 6:+53794345 | None:intergenic |
| TGTGGGAGAGGGATGGAGAT+GGG | 0.471520 | 6:+53794346 | None:intergenic |
| CGGGATTGTTGGAGTGTGAT+GGG | 0.471806 | 6:-53793692 | MsG0680032955.01.T01:CDS |
| GCCAGATATAACTGCTTTGA+GGG | 0.472290 | 6:-53793730 | MsG0680032955.01.T01:CDS |
| TTGTCGACTCGATCAAGCTT+TGG | 0.474531 | 6:-53794045 | MsG0680032955.01.T01:CDS |
| GTAGTAGTCACATCCGGAAA+AGG | 0.474750 | 6:-53794233 | MsG0680032955.01.T01:CDS |
| TGGTGCCGGGGTGGTTGTAG+AGG | 0.476793 | 6:+53794402 | None:intergenic |
| TAATCCGACGTCGGCGTCAA+TGG | 0.484777 | 6:+53794139 | None:intergenic |
| TGGTTCCAACTCCAGTTCCA+CGG | 0.489711 | 6:-53793856 | MsG0680032955.01.T01:CDS |
| GTTGGATGTGCAAGAGATGT+TGG | 0.492861 | 6:-53793598 | MsG0680032955.01.T01:CDS |
| GTTTGCGGTTCCATTGAAGA+AGG | 0.502690 | 6:+53794285 | None:intergenic |
| TGGAAAAGCTTTGACTTGGT+TGG | 0.503051 | 6:-53793946 | MsG0680032955.01.T01:CDS |
| AGAACCCGTGGAACTGGAGT+TGG | 0.505336 | 6:+53793851 | None:intergenic |
| ATGGGATTTGAGATTGGTGG+TGG | 0.506401 | 6:+53794382 | None:intergenic |
| GACGACGGAGAAGCCTAAAC+GGG | 0.508282 | 6:+53794163 | None:intergenic |
| GGATAGAGTGACGGGATTGT+TGG | 0.510076 | 6:-53793703 | MsG0680032955.01.T01:CDS |
| TGGTTGAAGCTTTAAAAGCC+CGG | 0.516057 | 6:-53793926 | MsG0680032955.01.T01:CDS |
| ACGGGATTGTTGGAGTGTGA+TGG | 0.518610 | 6:-53793693 | MsG0680032955.01.T01:CDS |
| AACCGCAAACCCCAACTCTC+CGG | 0.519734 | 6:-53794272 | MsG0680032955.01.T01:CDS |
| ATGTTGGGTTTGCCGTTGCT+TGG | 0.520733 | 6:-53793582 | MsG0680032955.01.T01:CDS |
| GGCCTTTCTTTAGCCCGTTT+AGG | 0.522513 | 6:-53794176 | MsG0680032955.01.T01:CDS |
| AGGGATGCGGATAGAGTGAC+GGG | 0.524067 | 6:-53793711 | MsG0680032955.01.T01:CDS |
| TGGGGAATGTGGGAGAGGGA+TGG | 0.524913 | 6:+53794339 | None:intergenic |
| GGTTGAAGCTTTAAAAGCCC+GGG | 0.525956 | 6:-53793925 | MsG0680032955.01.T01:CDS |
| CGAAGATATGATGTCGGTGT+TGG | 0.527222 | 6:-53793616 | MsG0680032955.01.T01:CDS |
| AGCCTAAACGGGCTAAAGAA+AGG | 0.528847 | 6:+53794174 | None:intergenic |
| AGTTCCATTTCCATTTCCAC+CGG | 0.532503 | 6:+53793893 | None:intergenic |
| TATGCAAGCTGTTATGGTTG+AGG | 0.533160 | 6:-53793430 | MsG0680032955.01.T01:CDS |
| TACGACTCGAGGGGTTTCGC+CGG | 0.538264 | 6:+53794253 | None:intergenic |
| ACTCGATCAAGCTTTGGTTA+GGG | 0.539536 | 6:-53794039 | MsG0680032955.01.T01:CDS |
| GGAGTTGGAACCAGAACCAT+TGG | 0.540160 | 6:+53793866 | None:intergenic |
| AAAGCCCGGGGAGATAAAAC+CGG | 0.540961 | 6:-53793912 | MsG0680032955.01.T01:CDS |
| GCCAAACCAGCCAAAGTAGG+AGG | 0.542195 | 6:+53793492 | None:intergenic |
| GATAGTGAATAGGGTTAGGA+CGG | 0.542386 | 6:-53793652 | MsG0680032955.01.T01:CDS |
| ACATCCGGAAAAGGCGGAGT+TGG | 0.544305 | 6:-53794224 | MsG0680032955.01.T01:CDS |
| AAAGCCAAACCAGCCAAAGT+AGG | 0.548994 | 6:+53793489 | None:intergenic |
| GGTTCCAACTCCAGTTCCAC+GGG | 0.549361 | 6:-53793855 | MsG0680032955.01.T01:CDS |
| TGAGATTGGTGGTGGTGCCG+GGG | 0.553356 | 6:+53794390 | None:intergenic |
| GGAAATGGAACTGGAACCAA+TGG | 0.553638 | 6:-53793882 | MsG0680032955.01.T01:CDS |
| ACAAGCTGCTTGGAGACTTG+TGG | 0.556461 | 6:-53793463 | MsG0680032955.01.T01:CDS |
| GGTGCCGGGGTGGTTGTAGA+GGG | 0.557844 | 6:+53794403 | None:intergenic |
| GATGGAGATGGGTGATTGAG+GGG | 0.558566 | 6:+53794357 | None:intergenic |
| ACCCTGCATCGATCCCTGCT+GGG | 0.559946 | 6:+53793799 | None:intergenic |
| TATAACTGCTTTGAGGGATG+CGG | 0.564480 | 6:-53793724 | MsG0680032955.01.T01:CDS |
| GTTGAGGAAGAGCCGAAAAG+AGG | 0.564615 | 6:-53793414 | MsG0680032955.01.T01:CDS |
| TAAAGAAAGGCCGATGTTAG+CGG | 0.565526 | 6:+53794187 | None:intergenic |
| GTCCGGACAGCCAGAACCCG+TGG | 0.566807 | 6:+53793839 | None:intergenic |
| GTCGCCATTGACGCCGACGT+CGG | 0.572864 | 6:-53794143 | MsG0680032955.01.T01:CDS |
| CAATCGATCAGGATAAAGTC+CGG | 0.577067 | 6:+53793822 | None:intergenic |
| TCCTGATCGATTGCCCAGCA+GGG | 0.577869 | 6:-53793812 | MsG0680032955.01.T01:CDS |
| CTTATAACCTCACTATCCTC+CGG | 0.578009 | 6:+53793552 | None:intergenic |
| GATTGGTGGTGGTGCCGGGG+TGG | 0.578938 | 6:+53794393 | None:intergenic |
| GCCCAGCAGGGATCGATGCA+GGG | 0.579481 | 6:-53793800 | MsG0680032955.01.T01:CDS |
| GTCGGCGTCAATGGCGACGA+CGG | 0.581502 | 6:+53794148 | None:intergenic |
| GGAGGCTTATTCAAAACAAG+TGG | 0.583747 | 6:+53793510 | None:intergenic |
| CGAGTCGTAGTAGTCACATC+CGG | 0.587327 | 6:-53794239 | MsG0680032955.01.T01:CDS |
| TTTGCGGTTCCATTGAAGAA+GGG | 0.588939 | 6:+53794286 | None:intergenic |
| GGGGTTTCGCCGGAGAGTTG+GGG | 0.590473 | 6:+53794263 | None:intergenic |
| ACAACTACCACCGCTAACAT+CGG | 0.591488 | 6:-53794197 | MsG0680032955.01.T01:CDS |
| TTGGTGGAAAAGCTTTGACT+TGG | 0.597183 | 6:-53793950 | MsG0680032955.01.T01:CDS |
| TTGAGGAAGAGCCGAAAAGA+GGG | 0.598761 | 6:-53793413 | MsG0680032955.01.T01:CDS |
| GAGGGATGCGGATAGAGTGA+CGG | 0.599149 | 6:-53793712 | MsG0680032955.01.T01:CDS |
| ATGTGACTACTACGACTCGA+GGG | 0.605354 | 6:+53794243 | None:intergenic |
| GTTGCTTGGTGTTATACCGG+AGG | 0.625941 | 6:-53793568 | MsG0680032955.01.T01:CDS |
| TTATAAGGAGTACGAATCGA+GGG | 0.635032 | 6:-53793536 | MsG0680032955.01.T01:CDS |
| GCCCGGGGAGATAAAACCGG+TGG | 0.644531 | 6:-53793909 | MsG0680032955.01.T01:CDS |
| TGTTATACCGGAGGATAGTG+AGG | 0.645901 | 6:-53793559 | MsG0680032955.01.T01:CDS |
| GAAATGGGATTTGAGATTGG+TGG | 0.648529 | 6:+53794379 | None:intergenic |
| GTTATAAGGAGTACGAATCG+AGG | 0.649607 | 6:-53793537 | MsG0680032955.01.T01:CDS |
| GATTACGCCTGCTAATGAAG+CGG | 0.650270 | 6:-53793766 | MsG0680032955.01.T01:CDS |
| CTTTGGTTAGGGATAAACGT+TGG | 0.652955 | 6:-53794028 | MsG0680032955.01.T01:CDS |
| TAAAGGCGAAGATATGATGT+CGG | 0.657374 | 6:-53793622 | MsG0680032955.01.T01:CDS |
| GATGTGACTACTACGACTCG+AGG | 0.657997 | 6:+53794242 | None:intergenic |
| TCCGGTATAACACCAAGCAA+CGG | 0.658522 | 6:+53793570 | None:intergenic |
| GTTGAAGCTTTAAAAGCCCG+GGG | 0.666393 | 6:-53793924 | MsG0680032955.01.T01:CDS |
| GTAGTCACATCCGGAAAAGG+CGG | 0.667846 | 6:-53794230 | MsG0680032955.01.T01:CDS |
| ACCGTCGTTGAGATTCTCAA+CGG | 0.685318 | 6:-53794071 | MsG0680032955.01.T01:CDS |
| AGAAAGGCCGATGTTAGCGG+TGG | 0.687146 | 6:+53794190 | None:intergenic |
| GCCGTTGAGAATCTCAACGA+CGG | 0.724103 | 6:+53794070 | None:intergenic |
| TGTGACTACTACGACTCGAG+GGG | 0.735600 | 6:+53794244 | None:intergenic |
| TAGGTTACGTAATCCGACGT+CGG | 0.748882 | 6:+53794130 | None:intergenic |
| CTATCCCTCTACAACCACCC+CGG | 0.752007 | 6:-53794407 | MsG0680032955.01.T01:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATATTAAGATGATAGTGAAT+AGG | - | Chr6:53794137-53794156 | MsG0680032955.01.T01:CDS | 20.0% |
| !!! | TATTAAGATGATAGTGAATA+GGG | - | Chr6:53794138-53794157 | MsG0680032955.01.T01:CDS | 20.0% |
| ! | TCTAAATTACCTATTGGATT+TGG | - | Chr6:53793830-53793849 | MsG0680032955.01.T01:CDS | 25.0% |
| AAATTACCTATTGGATTTGG+TGG | - | Chr6:53793833-53793852 | MsG0680032955.01.T01:CDS | 30.0% | |
| CCAATAGGTAATTTAGATCT+AGG | + | Chr6:53793827-53793846 | None:intergenic | 30.0% | |
| CCTAGATCTAAATTACCTAT+TGG | - | Chr6:53793824-53793843 | MsG0680032955.01.T01:CDS | 30.0% | |
| !! | GATTTTCAAGACCTAGTAAA+AGG | + | Chr6:53793697-53793716 | None:intergenic | 30.0% |
| !!! | AAGAAGGGATTTTGTTGTTA+GGG | + | Chr6:53793501-53793520 | None:intergenic | 30.0% |
| !!! | GATTTTGTTGTTAGGGTTTT+GGG | + | Chr6:53793494-53793513 | None:intergenic | 30.0% |
| CAACAAAATCCCTTCTTCAA+TGG | - | Chr6:53793504-53793523 | MsG0680032955.01.T01:CDS | 35.0% | |
| GTTAGGACGGATATGATTAA+AGG | - | Chr6:53794160-53794179 | MsG0680032955.01.T01:CDS | 35.0% | |
| TAAAGGCGAAGATATGATGT+CGG | - | Chr6:53794177-53794196 | MsG0680032955.01.T01:CDS | 35.0% | |
| TTTGAATAAGCCTCCTACTT+TGG | - | Chr6:53794297-53794316 | MsG0680032955.01.T01:CDS | 35.0% | |
| ! | AACGAGAAAAACCCTCTTTT+CGG | + | Chr6:53794400-53794419 | None:intergenic | 35.0% |
| ! | AGATGATAGTGAATAGGGTT+AGG | - | Chr6:53794143-53794162 | MsG0680032955.01.T01:CDS | 35.0% |
| ! | TTATAAGGAGTACGAATCGA+GGG | - | Chr6:53794263-53794282 | MsG0680032955.01.T01:CDS | 35.0% |
| !! | AGAGGGTTTTTCTCGTTTTT+TGG | - | Chr6:53794403-53794422 | MsG0680032955.01.T01:CDS | 35.0% |
| !!! | GAAGAAGGGATTTTGTTGTT+AGG | + | Chr6:53793502-53793521 | None:intergenic | 35.0% |
| !!! | GGATTTTGTTGTTAGGGTTT+TGG | + | Chr6:53793495-53793514 | None:intergenic | 35.0% |
| AAAACCGGTGGAAATGGAAA+TGG | - | Chr6:53793902-53793921 | MsG0680032955.01.T01:CDS | 40.0% | |
| AGTTCCATTTCCATTTCCAC+CGG | + | Chr6:53793909-53793928 | None:intergenic | 40.0% | |
| ATCAAAACCGCTTCATTAGC+AGG | + | Chr6:53794043-53794062 | None:intergenic | 40.0% | |
| CAAGACCTAGTAAAAGGTCT+AGG | + | Chr6:53793691-53793710 | None:intergenic | 40.0% | |
| CAATCGATCAGGATAAAGTC+CGG | + | Chr6:53793980-53793999 | None:intergenic | 40.0% | |
| CTTATAACCTCACTATCCTC+CGG | + | Chr6:53794250-53794269 | None:intergenic | 40.0% | |
| CTTTGGTTAGGGATAAACGT+TGG | - | Chr6:53793771-53793790 | MsG0680032955.01.T01:CDS | 40.0% | |
| GATAGTGAATAGGGTTAGGA+CGG | - | Chr6:53794147-53794166 | MsG0680032955.01.T01:CDS | 40.0% | |
| GCCAGATATAACTGCTTTGA+GGG | - | Chr6:53794069-53794088 | MsG0680032955.01.T01:CDS | 40.0% | |
| GGAGGCTTATTCAAAACAAG+TGG | + | Chr6:53794292-53794311 | None:intergenic | 40.0% | |
| GGATAGTATGCAAGCTGTTA+TGG | - | Chr6:53794363-53794382 | MsG0680032955.01.T01:CDS | 40.0% | |
| TAAAGAAAGGCCGATGTTAG+CGG | + | Chr6:53793615-53793634 | None:intergenic | 40.0% | |
| TATGCAAGCTGTTATGGTTG+AGG | - | Chr6:53794369-53794388 | MsG0680032955.01.T01:CDS | 40.0% | |
| TCCCTCAAAGCAGTTATATC+TGG | + | Chr6:53794073-53794092 | None:intergenic | 40.0% | |
| TTGGATGTGCAAGAGATGTT+GGG | - | Chr6:53794202-53794221 | MsG0680032955.01.T01:CDS | 40.0% | |
| TTTGCGGTTCCATTGAAGAA+GGG | + | Chr6:53793516-53793535 | None:intergenic | 40.0% | |
| ! | ACTCGATCAAGCTTTGGTTA+GGG | - | Chr6:53793760-53793779 | MsG0680032955.01.T01:CDS | 40.0% |
| ! | CGTAACCTAGACCTTTTACT+AGG | - | Chr6:53793683-53793702 | MsG0680032955.01.T01:CDS | 40.0% |
| ! | GAAATGGGATTTGAGATTGG+TGG | + | Chr6:53793423-53793442 | None:intergenic | 40.0% |
| ! | GCTTTTCCACCAAATCCAAT+AGG | + | Chr6:53793842-53793861 | None:intergenic | 40.0% |
| ! | GTTATAAGGAGTACGAATCG+AGG | - | Chr6:53794262-53794281 | MsG0680032955.01.T01:CDS | 40.0% |
| ! | TTGGTGGAAAAGCTTTGACT+TGG | - | Chr6:53793849-53793868 | MsG0680032955.01.T01:CDS | 40.0% |
| !! | TATAACTGCTTTGAGGGATG+CGG | - | Chr6:53794075-53794094 | MsG0680032955.01.T01:CDS | 40.0% |
| !! | TGGAAAAGCTTTGACTTGGT+TGG | - | Chr6:53793853-53793872 | MsG0680032955.01.T01:CDS | 40.0% |
| !! | TGGTTGAAGCTTTAAAAGCC+CGG | - | Chr6:53793873-53793892 | MsG0680032955.01.T01:CDS | 40.0% |
| !!! | GGGTTTTTCTCGTTTTTTGG+TGG | - | Chr6:53794406-53794425 | MsG0680032955.01.T01:CDS | 40.0% |
| !!! | GTTGTTAGGGTTTTGGGTTT+GGG | + | Chr6:53793488-53793507 | None:intergenic | 40.0% |
| !!! | TGTTGTTAGGGTTTTGGGTT+TGG | + | Chr6:53793489-53793508 | None:intergenic | 40.0% |
| AAAGCCAAACCAGCCAAAGT+AGG | + | Chr6:53794313-53794332 | None:intergenic | 45.0% | |
| AATAAGCCTCCTACTTTGGC+TGG | - | Chr6:53794301-53794320 | MsG0680032955.01.T01:CDS | 45.0% | |
| ACAACTACCACCGCTAACAT+CGG | - | Chr6:53793602-53793621 | MsG0680032955.01.T01:CDS | 45.0% | |
| ACCGTCGTTGAGATTCTCAA+CGG | - | Chr6:53793728-53793747 | MsG0680032955.01.T01:CDS | 45.0% | |
| ATGGGTGATTGAGGGGAAAT+GGG | + | Chr6:53793438-53793457 | None:intergenic | 45.0% | |
| ATGTGACTACTACGACTCGA+GGG | + | Chr6:53793559-53793578 | None:intergenic | 45.0% | |
| CGAAGATATGATGTCGGTGT+TGG | - | Chr6:53794183-53794202 | MsG0680032955.01.T01:CDS | 45.0% | |
| CGCCAGATATAACTGCTTTG+AGG | - | Chr6:53794068-53794087 | MsG0680032955.01.T01:CDS | 45.0% | |
| CGGAGGATAGTGAGGTTATA+AGG | - | Chr6:53794248-53794267 | MsG0680032955.01.T01:CDS | 45.0% | |
| GATTACGCCTGCTAATGAAG+CGG | - | Chr6:53794033-53794052 | MsG0680032955.01.T01:CDS | 45.0% | |
| GGAAATGGAACTGGAACCAA+TGG | - | Chr6:53793917-53793936 | MsG0680032955.01.T01:CDS | 45.0% | |
| GGAGATAAAACCGGTGGAAA+TGG | - | Chr6:53793896-53793915 | MsG0680032955.01.T01:CDS | 45.0% | |
| GGTGGAAATGGAAATGGAAC+TGG | - | Chr6:53793908-53793927 | MsG0680032955.01.T01:CDS | 45.0% | |
| GTAGTAGTCACATCCGGAAA+AGG | - | Chr6:53793566-53793585 | MsG0680032955.01.T01:CDS | 45.0% | |
| GTTGGATGTGCAAGAGATGT+TGG | - | Chr6:53794201-53794220 | MsG0680032955.01.T01:CDS | 45.0% | |
| GTTTGCGGTTCCATTGAAGA+AGG | + | Chr6:53793517-53793536 | None:intergenic | 45.0% | |
| TAGGTTACGTAATCCGACGT+CGG | + | Chr6:53793672-53793691 | None:intergenic | 45.0% | |
| TCCGGTATAACACCAAGCAA+CGG | + | Chr6:53794232-53794251 | None:intergenic | 45.0% | |
| TGTTATACCGGAGGATAGTG+AGG | - | Chr6:53794240-53794259 | MsG0680032955.01.T01:CDS | 45.0% | |
| TTGAGGAAGAGCCGAAAAGA+GGG | - | Chr6:53794386-53794405 | MsG0680032955.01.T01:CDS | 45.0% | |
| ! | ATGGGATTTGAGATTGGTGG+TGG | + | Chr6:53793420-53793439 | None:intergenic | 45.0% |
| ! | GACTCGATCAAGCTTTGGTT+AGG | - | Chr6:53793759-53793778 | MsG0680032955.01.T01:CDS | 45.0% |
| ! | GGGGAAATGGGATTTGAGAT+TGG | + | Chr6:53793426-53793445 | None:intergenic | 45.0% |
| ! | GTTGGAGTGTGATGGGATTA+GGG | - | Chr6:53794114-53794133 | MsG0680032955.01.T01:CDS | 45.0% |
| ! | TGGCTTTTGAACAAGCTGCT+TGG | - | Chr6:53794326-53794345 | MsG0680032955.01.T01:CDS | 45.0% |
| ! | TGTTGGAGTGTGATGGGATT+AGG | - | Chr6:53794113-53794132 | MsG0680032955.01.T01:CDS | 45.0% |
| ! | TTTACCAACTCCGCCTTTTC+CGG | + | Chr6:53793582-53793601 | None:intergenic | 45.0% |
| !! | AGCCTAAACGGGCTAAAGAA+AGG | + | Chr6:53793628-53793647 | None:intergenic | 45.0% |
| !! | GGTTGAAGCTTTAAAAGCCC+GGG | - | Chr6:53793874-53793893 | MsG0680032955.01.T01:CDS | 45.0% |
| !! | GTTGAAGCTTTAAAAGCCCG+GGG | - | Chr6:53793875-53793894 | MsG0680032955.01.T01:CDS | 45.0% |
| !! | TTGTCGACTCGATCAAGCTT+TGG | - | Chr6:53793754-53793773 | MsG0680032955.01.T01:CDS | 45.0% |
| !!! | AGGGTTTTGGGTTTGGGTTT+GGG | + | Chr6:53793482-53793501 | None:intergenic | 45.0% |
| !!! | TAGGGTTTTGGGTTTGGGTT+TGG | + | Chr6:53793483-53793502 | None:intergenic | 45.0% |
| AAAGCCCGGGGAGATAAAAC+CGG | - | Chr6:53793887-53793906 | MsG0680032955.01.T01:CDS | 50.0% | |
| ACAAGCTGCTTGGAGACTTG+TGG | - | Chr6:53794336-53794355 | MsG0680032955.01.T01:CDS | 50.0% | |
| ACGGGATTGTTGGAGTGTGA+TGG | - | Chr6:53794106-53794125 | MsG0680032955.01.T01:CDS | 50.0% | |
| ATGTTGGGTTTGCCGTTGCT+TGG | - | Chr6:53794217-53794236 | MsG0680032955.01.T01:CDS | 50.0% | |
| CGAGTCGTAGTAGTCACATC+CGG | - | Chr6:53793560-53793579 | MsG0680032955.01.T01:CDS | 50.0% | |
| CGGGATTGTTGGAGTGTGAT+GGG | - | Chr6:53794107-53794126 | MsG0680032955.01.T01:CDS | 50.0% | |
| GATGGAGATGGGTGATTGAG+GGG | + | Chr6:53793445-53793464 | None:intergenic | 50.0% | |
| GATGGGTGATTGAGGGGAAA+TGG | + | Chr6:53793439-53793458 | None:intergenic | 50.0% | |
| GATGTGACTACTACGACTCG+AGG | + | Chr6:53793560-53793579 | None:intergenic | 50.0% | |
| GCCGTTGAGAATCTCAACGA+CGG | + | Chr6:53793732-53793751 | None:intergenic | 50.0% | |
| GGAACTGGAACCAATGGTTC+TGG | - | Chr6:53793923-53793942 | MsG0680032955.01.T01:CDS | 50.0% | |
| GGAGTTGGAACCAGAACCAT+TGG | + | Chr6:53793936-53793955 | None:intergenic | 50.0% | |
| GGATGGAGATGGGTGATTGA+GGG | + | Chr6:53793446-53793465 | None:intergenic | 50.0% | |
| GGCCTTTCTTTAGCCCGTTT+AGG | - | Chr6:53793623-53793642 | MsG0680032955.01.T01:CDS | 50.0% | |
| GTAGTCACATCCGGAAAAGG+CGG | - | Chr6:53793569-53793588 | MsG0680032955.01.T01:CDS | 50.0% | |
| GTTGAGGAAGAGCCGAAAAG+AGG | - | Chr6:53794385-53794404 | MsG0680032955.01.T01:CDS | 50.0% | |
| TGGTTCCAACTCCAGTTCCA+CGG | - | Chr6:53793943-53793962 | MsG0680032955.01.T01:CDS | 50.0% | |
| TGTGACTACTACGACTCGAG+GGG | + | Chr6:53793558-53793577 | None:intergenic | 50.0% | |
| ! | GGATAGAGTGACGGGATTGT+TGG | - | Chr6:53794096-53794115 | MsG0680032955.01.T01:CDS | 50.0% |
| ! | GGTTTGGGTTTGGGGAATGT+GGG | + | Chr6:53793473-53793492 | None:intergenic | 50.0% |
| !! | GCCGTTGCTTGGTGTTATAC+CGG | - | Chr6:53794228-53794247 | MsG0680032955.01.T01:CDS | 50.0% |
| !! | GTTGCTTGGTGTTATACCGG+AGG | - | Chr6:53794231-53794250 | MsG0680032955.01.T01:CDS | 50.0% |
| !! | TTTGAGATTGGTGGTGGTGC+CGG | + | Chr6:53793414-53793433 | None:intergenic | 50.0% |
| !!! | GGGTTTTGGGTTTGGGTTTG+GGG | + | Chr6:53793481-53793500 | None:intergenic | 50.0% |
| !!! | TTCCACCGGTTTTATCTCCC+CGG | + | Chr6:53793895-53793914 | None:intergenic | 50.0% |
| AACCGCAAACCCCAACTCTC+CGG | - | Chr6:53793527-53793546 | MsG0680032955.01.T01:CDS | 55.0% | |
| AACTCCAGTTCCACGGGTTC+TGG | - | Chr6:53793950-53793969 | MsG0680032955.01.T01:CDS | 55.0% | |
| ACATCCGGAAAAGGCGGAGT+TGG | - | Chr6:53793575-53793594 | MsG0680032955.01.T01:CDS | 55.0% | |
| AGAAAGGCCGATGTTAGCGG+TGG | + | Chr6:53793612-53793631 | None:intergenic | 55.0% | |
| AGAACCCGTGGAACTGGAGT+TGG | + | Chr6:53793951-53793970 | None:intergenic | 55.0% | |
| AGGGATGCGGATAGAGTGAC+GGG | - | Chr6:53794088-53794107 | MsG0680032955.01.T01:CDS | 55.0% | |
| ATCCTGATCGATTGCCCAGC+AGG | - | Chr6:53793986-53794005 | MsG0680032955.01.T01:CDS | 55.0% | |
| ATGTGGGAGAGGGATGGAGA+TGG | + | Chr6:53793457-53793476 | None:intergenic | 55.0% | |
| CGACGACGGAGAAGCCTAAA+CGG | + | Chr6:53793640-53793659 | None:intergenic | 55.0% | |
| CTATCCCTCTACAACCACCC+CGG | - | Chr6:53793392-53793411 | MsG0680032955.01.T01:CDS | 55.0% | |
| GACGACGGAGAAGCCTAAAC+GGG | + | Chr6:53793639-53793658 | None:intergenic | 55.0% | |
| GAGGGATGCGGATAGAGTGA+CGG | - | Chr6:53794087-53794106 | MsG0680032955.01.T01:CDS | 55.0% | |
| GCCAAACCAGCCAAAGTAGG+AGG | + | Chr6:53794310-53794329 | None:intergenic | 55.0% | |
| GGGATGGAGATGGGTGATTG+AGG | + | Chr6:53793447-53793466 | None:intergenic | 55.0% | |
| GGTTCCAACTCCAGTTCCAC+GGG | - | Chr6:53793944-53793963 | MsG0680032955.01.T01:CDS | 55.0% | |
| GGTTTGGGGAATGTGGGAGA+GGG | + | Chr6:53793467-53793486 | None:intergenic | 55.0% | |
| TAATCCGACGTCGGCGTCAA+TGG | + | Chr6:53793663-53793682 | None:intergenic | 55.0% | |
| TCCTGATCGATTGCCCAGCA+GGG | - | Chr6:53793987-53794006 | MsG0680032955.01.T01:CDS | 55.0% | |
| TGCTTGGAGACTTGTGGAGC+AGG | - | Chr6:53794342-53794361 | MsG0680032955.01.T01:CDS | 55.0% | |
| TGTGGGAGAGGGATGGAGAT+GGG | + | Chr6:53793456-53793475 | None:intergenic | 55.0% | |
| ! | GCCTCCTACTTTGGCTGGTT+TGG | - | Chr6:53794306-53794325 | MsG0680032955.01.T01:CDS | 55.0% |
| ! | GGGTTTGGGTTTGGGGAATG+TGG | + | Chr6:53793474-53793493 | None:intergenic | 55.0% |
| !! | TTGAGATTGGTGGTGGTGCC+GGG | + | Chr6:53793413-53793432 | None:intergenic | 55.0% |
| !!! | TCCACCGGTTTTATCTCCCC+GGG | + | Chr6:53793894-53793913 | None:intergenic | 55.0% |
| ACAGCCAGAACCCGTGGAAC+TGG | + | Chr6:53793957-53793976 | None:intergenic | 60.0% | |
| AGGGGTTTCGCCGGAGAGTT+GGG | + | Chr6:53793540-53793559 | None:intergenic | 60.0% | |
| GGGTTTGGGGAATGTGGGAG+AGG | + | Chr6:53793468-53793487 | None:intergenic | 60.0% | |
| TACGACTCGAGGGGTTTCGC+CGG | + | Chr6:53793549-53793568 | None:intergenic | 60.0% | |
| TCCCTGCTGGGCAATCGATC+AGG | + | Chr6:53793991-53794010 | None:intergenic | 60.0% | |
| TGGGGAATGTGGGAGAGGGA+TGG | + | Chr6:53793463-53793482 | None:intergenic | 60.0% | |
| ! | AACCCTGCATCGATCCCTGC+TGG | + | Chr6:53794004-53794023 | None:intergenic | 60.0% |
| ! | ACCCTGCATCGATCCCTGCT+GGG | + | Chr6:53794003-53794022 | None:intergenic | 60.0% |
| ! | TTCCACGGGTTCTGGCTGTC+CGG | - | Chr6:53793958-53793977 | MsG0680032955.01.T01:CDS | 60.0% |
| !! | TGAGATTGGTGGTGGTGCCG+GGG | + | Chr6:53793412-53793431 | None:intergenic | 60.0% |
| CGCCGGAGAGTTGGGGTTTG+CGG | + | Chr6:53793532-53793551 | None:intergenic | 65.0% | |
| GAGGGGTTTCGCCGGAGAGT+TGG | + | Chr6:53793541-53793560 | None:intergenic | 65.0% | |
| GCCCAGCAGGGATCGATGCA+GGG | - | Chr6:53793999-53794018 | MsG0680032955.01.T01:CDS | 65.0% | |
| GCCCGGGGAGATAAAACCGG+TGG | - | Chr6:53793890-53793909 | MsG0680032955.01.T01:CDS | 65.0% | |
| GGGGTTTCGCCGGAGAGTTG+GGG | + | Chr6:53793539-53793558 | None:intergenic | 65.0% | |
| GTCGCCATTGACGCCGACGT+CGG | - | Chr6:53793656-53793675 | MsG0680032955.01.T01:CDS | 65.0% | |
| GTCGGCGTCAATGGCGACGA+CGG | + | Chr6:53793654-53793673 | None:intergenic | 65.0% | |
| TGCCCAGCAGGGATCGATGC+AGG | - | Chr6:53793998-53794017 | MsG0680032955.01.T01:CDS | 65.0% | |
| ! | GGTGCCGGGGTGGTTGTAGA+GGG | + | Chr6:53793399-53793418 | None:intergenic | 65.0% |
| ! | TGGTGCCGGGGTGGTTGTAG+AGG | + | Chr6:53793400-53793419 | None:intergenic | 65.0% |
| GTCCGGACAGCCAGAACCCG+TGG | + | Chr6:53793963-53793982 | None:intergenic | 70.0% | |
| !! | GATTGGTGGTGGTGCCGGGG+TGG | + | Chr6:53793409-53793428 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr6 | gene | 53793389 | 53794432 | 53793389 | ID=MsG0680032955.01;Name=MsG0680032955.01 |
| Chr6 | mRNA | 53793389 | 53794432 | 53793389 | ID=MsG0680032955.01.T01;Parent=MsG0680032955.01;Name=MsG0680032955.01.T01;_AED=0.46;_eAED=0.46;_QI=0|-1|0|1|-1|1|1|0|347 |
| Chr6 | exon | 53793389 | 53794432 | 53793389 | ID=MsG0680032955.01.T01:exon:9439;Parent=MsG0680032955.01.T01 |
| Chr6 | CDS | 53793389 | 53794432 | 53793389 | ID=MsG0680032955.01.T01:cds;Parent=MsG0680032955.01.T01 |
| Gene Sequence |
| Protein sequence |
