AlfalfaGEDB | MsG0280011273.01

M. sativa cultivar ZhongmuNo.1 / MsG0280011273.01

KEGG: -
GO: GO:0004222 GO:0005524 GO:0006508 GO:0009055
PFAM: PF00004 PF01434 PF02298

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0280011273.01.T01	XP_003597694.1	95.786	878	21	2	1	867	1	873	0	1705

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0280011273.01.T01	A8MPR5	64.041	876	283	12	7	865	3	863	0	1070

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0280011273.01.T01	G7IUM1	95.786	878	21	2	1	867	1	873	0.0	1705

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0080047955.01	MsG0280011273.01	0.801839	7.449220e-49	3.593869e-46
MsG0080047989.01	MsG0280011273.01	0.845131	4.917399e-59	8.113524e-56
MsG0080048068.01	MsG0280011273.01	0.806885	6.618111e-50	3.633661e-47
MsG0080048198.01	MsG0280011273.01	0.811403	7.124897e-51	4.406433e-48
MsG0080048528.01	MsG0280011273.01	0.856649	2.790035e-62	6.705303e-59
MsG0080048776.01	MsG0280011273.01	0.927860	6.519081e-92	3.331718e-87
MsG0080048777.01	MsG0280011273.01	0.912882	1.169570e-83	2.689986e-79
MsG0080048780.01	MsG0280011273.01	0.866525	2.675275e-65	9.045235e-62
MsG0080048801.01	MsG0280011273.01	0.909888	3.457208e-82	6.875252e-78
MsG0080048820.01	MsG0280011273.01	0.888462	5.777043e-73	4.479695e-69

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0280011273.01.T01	MTR_2g101290	95.786	878	21	2	1	867	1	873	0.0	1705
MsG0280011273.01.T01	MTR_2g101290	96.721	732	19	1	1	732	1	727	0.0	1441
MsG0280011273.01.T01	MTR_2g101300	91.765	170	14	0	854	1023	21	190	3.68e-97	305
MsG0280011273.01.T01	MTR_3g115110	40.133	451	233	6	420	837	249	695	2.88e-95	318
MsG0280011273.01.T01	MTR_4g094662	40.217	460	230	6	414	838	223	672	7.80e-93	311
MsG0280011273.01.T01	MTR_2g438140	40.305	459	230	6	414	838	220	668	5.06e-92	308
MsG0280011273.01.T01	MTR_7g010800	39.341	455	231	6	414	833	200	644	3.60e-88	297
MsG0280011273.01.T01	MTR_2g438140	46.045	354	175	5	414	761	280	623	1.75e-86	293
MsG0280011273.01.T01	MTR_1g028390	40.091	439	226	9	422	838	331	754	9.37e-85	291
MsG0280011273.01.T01	MTR_7g096060	39.101	445	240	7	420	838	240	679	5.41e-82	281

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0280011273.01.T01	AT3G16290	64.041	876	283	12	7	865	3	863	0.0	1070
MsG0280011273.01.T01	AT5G42270	40.959	459	233	7	420	845	247	700	5.78e-96	320
MsG0280011273.01.T01	AT2G30950	41.630	454	221	7	414	833	222	665	3.45e-94	315
MsG0280011273.01.T01	AT1G50250	39.869	459	238	7	420	845	259	712	3.57e-94	315
MsG0280011273.01.T01	AT2G30950	41.630	454	221	7	414	833	218	661	4.30e-94	314
MsG0280011273.01.T01	AT2G30950	41.630	454	221	7	414	833	218	661	4.30e-94	314
MsG0280011273.01.T01	AT2G30950	41.630	454	221	7	414	833	218	661	4.30e-94	314
MsG0280011273.01.T01	AT5G15250	40.440	455	226	7	414	833	215	659	1.90e-91	307
MsG0280011273.01.T01	AT1G06430	39.868	454	229	7	414	833	211	654	2.15e-91	306
MsG0280011273.01.T01	AT1G06430	39.868	454	229	7	414	833	211	654	2.15e-91	306

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Find 243 sgRNAs with CRISPR-Local

Find 530 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACTTGAAGTAACCACCA+TGG	0.678888	2:-81819110	None:intergenic
AAAATCTTTATCCCCAAACC+CGG	0.584127	2:+81813617	MsG0280011273.01.T01:CDS
AAAATGGCGATTAATGGAAT+TGG	0.362031	2:+81812127	MsG0280011273.01.T01:CDS
AAAGCAGTGTTGTTTGGTTC+AGG	0.328897	2:-81818633	None:intergenic
AAAGCTGTGGCTGGTGAGGC+AGG	0.404076	2:+81812884	MsG0280011273.01.T01:CDS
AAAGGAGTTTATGAAATCTG+GGG	0.701973	2:+81812369	MsG0280011273.01.T01:CDS
AAAGTTGCTTGTCGAAGTTA+TGG	0.482445	2:+81818964	MsG0280011273.01.T01:CDS
AACAAGGCAATGTGACGACA+TGG	0.621738	2:-81811192	None:intergenic
AACAATGTCTTCTTTGGTTA+AGG	0.317332	2:-81816731	None:intergenic
AACAGTAATATGATCAAAGA+GGG	0.576704	2:-81815570	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAATGGCGATTAATGGAAT+TGG	+	Chr2:81812127-81812146	MsG0280011273.01.T01:CDS	30.0%
AAAGGAGTTTATGAAATCTG+GGG	+	Chr2:81812369-81812388	MsG0280011273.01.T01:CDS	30.0%
AACAATGTCTTCTTTGGTTA+AGG	-	Chr2:81816734-81816753	None:intergenic	30.0%
AACTACTAATATCATGCAGT+CGG	+	Chr2:81815543-81815562	MsG0280011273.01.T01:intron	30.0%
AAGACAATTACTGTACATCA+CGG	-	Chr2:81813971-81813990	None:intergenic	30.0%
AAGGATAAAATGGCGATTAA+TGG	+	Chr2:81812121-81812140	MsG0280011273.01.T01:CDS	30.0%
AAGGCTATCCTATATTCTTA+TGG	+	Chr2:81814505-81814524	MsG0280011273.01.T01:intron	30.0%
AATACAGCATAGTTATGAAC+TGG	+	Chr2:81815876-81815895	MsG0280011273.01.T01:intron	30.0%
ACAAAGGAGTTTATGAAATC+TGG	+	Chr2:81812367-81812386	MsG0280011273.01.T01:CDS	30.0%
AGAAGAAGGATTATGAAGAT+AGG	+	Chr2:81812203-81812222	MsG0280011273.01.T01:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
Chr2	gene	81811194	81819180	81811194	ID=MsG0280011273.01;Name=MsG0280011273.01
Chr2	mRNA	81811194	81819180	81811194	ID=MsG0280011273.01.T01;Parent=MsG0280011273.01;Name=MsG0280011273.01.T01;_AED=0.47;_eAED=0.47;_QI=0\|0\|0\|1\|1\|1\|13\|0\|1023
Chr2	exon	81811194	81812562	81811194	ID=MsG0280011273.01.T01:exon:12201;Parent=MsG0280011273.01.T01
Chr2	exon	81812834	81813006	81812834	ID=MsG0280011273.01.T01:exon:12202;Parent=MsG0280011273.01.T01
Chr2	exon	81813306	81813407	81813306	ID=MsG0280011273.01.T01:exon:12203;Parent=MsG0280011273.01.T01
Chr2	exon	81813503	81813667	81813503	ID=MsG0280011273.01.T01:exon:12204;Parent=MsG0280011273.01.T01
Chr2	exon	81813818	81813958	81813818	ID=MsG0280011273.01.T01:exon:12205;Parent=MsG0280011273.01.T01
Chr2	exon	81814942	81815100	81814942	ID=MsG0280011273.01.T01:exon:12206;Parent=MsG0280011273.01.T01
Chr2	exon	81815240	81815325	81815240	ID=MsG0280011273.01.T01:exon:12207;Parent=MsG0280011273.01.T01
Chr2	exon	81815562	81815640	81815562	ID=MsG0280011273.01.T01:exon:12208;Parent=MsG0280011273.01.T01
Chr2	exon	81816104	81816193	81816104	ID=MsG0280011273.01.T01:exon:12209;Parent=MsG0280011273.01.T01
Chr2	exon	81816471	81816527	81816471	ID=MsG0280011273.01.T01:exon:12210;Parent=MsG0280011273.01.T01
Chr2	exon	81816670	81816847	81816670	ID=MsG0280011273.01.T01:exon:12211;Parent=MsG0280011273.01.T01
Chr2	exon	81818622	81818705	81818622	ID=MsG0280011273.01.T01:exon:12212;Parent=MsG0280011273.01.T01
Chr2	exon	81818792	81819180	81818792	ID=MsG0280011273.01.T01:exon:12213;Parent=MsG0280011273.01.T01
Chr2	CDS	81811194	81812562	81811194	ID=MsG0280011273.01.T01:cds;Parent=MsG0280011273.01.T01
Chr2	CDS	81812834	81813006	81812834	ID=MsG0280011273.01.T01:cds;Parent=MsG0280011273.01.T01
Chr2	CDS	81813306	81813407	81813306	ID=MsG0280011273.01.T01:cds;Parent=MsG0280011273.01.T01
Chr2	CDS	81813503	81813667	81813503	ID=MsG0280011273.01.T01:cds;Parent=MsG0280011273.01.T01
Chr2	CDS	81813818	81813958	81813818	ID=MsG0280011273.01.T01:cds;Parent=MsG0280011273.01.T01
Chr2	CDS	81814942	81815100	81814942	ID=MsG0280011273.01.T01:cds;Parent=MsG0280011273.01.T01
Chr2	CDS	81815240	81815325	81815240	ID=MsG0280011273.01.T01:cds;Parent=MsG0280011273.01.T01
Chr2	CDS	81815562	81815640	81815562	ID=MsG0280011273.01.T01:cds;Parent=MsG0280011273.01.T01
Chr2	CDS	81816104	81816193	81816104	ID=MsG0280011273.01.T01:cds;Parent=MsG0280011273.01.T01
Chr2	CDS	81816471	81816527	81816471	ID=MsG0280011273.01.T01:cds;Parent=MsG0280011273.01.T01
Chr2	CDS	81816670	81816847	81816670	ID=MsG0280011273.01.T01:cds;Parent=MsG0280011273.01.T01
Chr2	CDS	81818622	81818705	81818622	ID=MsG0280011273.01.T01:cds;Parent=MsG0280011273.01.T01
Chr2	CDS	81818792	81819180	81818792	ID=MsG0280011273.01.T01:cds;Parent=MsG0280011273.01.T01

Gene Sequence

>MsG0280011273.01.T01

ATGTCGTCACATTGCCTTGTTCATTTTCCACCTTCATCTTCATCATCAAAATTCCTAAACCCAAAATTCAAAAAATTCCCAAAACCCTCCAAATTCCGTTCAATCTCATCACAAATTCAAACCCCAGAATCTGAAAATGACGAAAAAAACCAAAAAAATCTCAACTTTAACAACCTCAATTTCCTCAAACTCACCGTAACCCTCACTGTTATCTCCGCTGCACTTCCGCAACCCGCCACTGCCTTCGCCGCCGCTGGAAAAAAACGAGCACCCAGAAAAGCTTCATCCAAAAAGGTTGAAGCTTTGTCAATAGAGGAGGTGAAATCATGGATTGAAGGATTACCCATTGTTTCAGAACGCATACCTTATACTGAAATAGCTGAATTGAAGAATTTGGGTATGCTCAAACATATAGTGAAACCTAGTGCCGTGGAATTGAGGGAACGTGCTGTTGCAGTATTGGTTGTTTTGGAGGATTCTAGAGTGTTGAGAACAGTGTTGCCAAATGTTGAAAGTGATAGAAAATTTTGGGGTTTATGGGATGAGTTAAAGATTGAGAATTTCTGTGTGAATGCATATTCACCACCTGTTAAGGTTCCAGAGATGCCGCTTTCGGTATTGGCAAGGATTTGGTTGTCTCTGCCATTTCACAAGCCTTTGGTTGAGTTTGTTAATAGGTTTCAGCCGAAGAAAAAGTCGAAGAAGGAGTTGGAGTTGAGGGAAGCTAGGATGCAGTTGCAGAGGCAGAAGAAAGAAGAAGTGGTGAAGAAGATGAAAGAGAGGGAGATGATTGAGAGGAATGAGAGGAATAAGAAGAGAGAAGCGGAGAATGAAAAGAGAATGAGAAGGAGGAAAGAGTATAAGGAAAAAATGGTTGAAGTTAAGGCCAATGCGTTTTTTAATGCTACTTTTTGGACTCGTATGGCGAAGGATAAAATGGCGATTAATGGAATTGGAGTGCTTTTTTTCGTGATTTTTTACAGGACTGTGGTGGTTAGCTATAAGAAGCAGAAGAAGGATTATGAAGATAGGATTAAGATTCAGAAAGCTGATGCGGAAGAGAGAAGGAAGATGAAGGAGATGGAAGCCGAGATGGGGTGGAGTGAAGCTGGCGGTGATGAGGATGAGAGTGAGCTGGTGAAAGAAGGAGAGGAGAATCCTTATTTGAAAATGACAAAGGAGTTTATGAAATCTGGGGCACGGGTTCGAAGAGCACAAAATAGAAGGCTTCCTCAGTATCTTGAGAGAGGCGTGGATGTGAAGTTTACTGATGTTGCTGGTCTCGGTAAAATACGACTTGAACTTGAGGAGATTGTCAAGTTCTTCACTCATGGAGAGATGTACCGAAGGAGAGGAGTGAAAATCCCAGGTGGCATACTTCTTTGTGGCCCCCCTGGAGTGGGAAAGACATTGCTGGCAAAAGCTGTGGCTGGTGAGGCAGGAGTTAATTTCTTCTCTATCTCTGCTTCACAGTTTGTCGAAATATACGTTGGTGTTGGGGCTTCTCGTGTTCGATCACTTTACCAAGAAGCCAGAGAAAATGCTCCTTCTGTTGTCTTCATTGATGAGCTGGATGCTGTAGGAAGGAAGCGTGGCTTGATTAAAGGTTCAGGTGGACAGGAACGTGATGCTACTCTTAATCAGCTCCTGGTGTGCTTAGATGGATTTGAAGGAAGAGGGGAGGTGATCACTATTGCCTCCACAAATCGACCAGACATTCTGGATCCAGCACTTGTAAGACCTGGCCGGTTTGATCGGAAAATCTTTATCCCCAAACCCGGTTTCATTGGCCGCATTGAAATTCTAAAGGTCCATGCTCGTAAAAAGCCAATTGCTGAAGATGTAGACTATGAAATTGTTGCTAGTATGACTGATGGAATGGTTGGTGCGGAGCTAGCTAACATAGTTGAGGTTGCTGCTATCAATATGATGCGGGACTCAAGAACTGAGGTTACCACCGATGACTTATTACAGGCTGCTCAAATGGAAGAGAGAGGAATGCTAGATAGAAAGGAGCGAAGCAAAGAGAAATGGGAACAAGTAGCTATAAATGAAGCTGCAATGGCCGTTGCGGCTATGAACTTGCCTAATTTTGACAATATCGAATATATCACAATTGCTCCTAGAGCTGGTAGGGAATTGGGATATGTTCGGACGATGCTGGAGTCCATAAAATTTAATGATGGAATGCTCACTCGGCAATCCCTCTTTGATCATATTACTGTTCAACTCGCACCCCGTGCAGCTGATGAAATGTGGTTTGGGAAAGATCAGTTGAGTACGATATGGGCTGAAACTGCAGACAATGCTAGGGTTGCAGCAAGAATGTATATGATTGGCGGGCTTTCTGATAAGTATCGCGGAGAAATTGATTTGGAAGCAATGAAGATTCTCAACCTTTGCTATGAACGCGCAAAAGAGATCCTGCAGCAAAATAAAACACTGATGGATACATTGGTGAATGAACTTGTTGAGAAGAAAACCTTAACCAAAGAAGACATTGTTCGTCTTGTACAATTGCATGGCCACGCAAAACCAATTCCTATTAGCGTACTTGACATAAGGGATGCCAAACGTAAAGAACTACAAGAAATAGCTAGTTGGCATGAACCTGAACCAAACAACACTGCTTTTTACACTCAATGGGCTGAAAGAAACCGATTCCAAATCGGAGATTCTCTCGTTTTTGAGTACGAGAATGATTCAGTTCTTACTGTGGAGAAGTTTGATTACTTCAATTGTGATGCAAGTCAACCTATCACTACTTTTACCAATGGAAAGAGCACTCTTAATCTTGACAGATCTGGACCTTTCTACTTTATAAGTGGAACTGATGAGCATTGCAGTCATGGTCAAAAGTTGCTTGTCGAAGTTATGGCGCCACATCCAATTCCAGCATCTCCACCAACCTCGATTTCGAATCCACCAGAAGGTTCATCACCGATCATGGCTCCTGCAAATTCACCTTATTCTTCTGATTCCATAGAGGCTTCATCCTCCTCCATGGTGGTTACTTCAAGTTTTATGTTAACTTTGGTCACATTCGGAATTGTGATGATGTTAGCACTCTAG

Protein sequence

>MsG0280011273.01.T01

MSSHCLVHFPPSSSSSKFLNPKFKKFPKPSKFRSISSQIQTPESENDEKNQKNLNFNNLNFLKLTVTLTVISAALPQPATAFAAAGKKRAPRKASSKKVEALSIEEVKSWIEGLPIVSERIPYTEIAELKNLGMLKHIVKPSAVELRERAVAVLVVLEDSRVLRTVLPNVESDRKFWGLWDELKIENFCVNAYSPPVKVPEMPLSVLARIWLSLPFHKPLVEFVNRFQPKKKSKKELELREARMQLQRQKKEEVVKKMKEREMIERNERNKKREAENEKRMRRRKEYKEKMVEVKANAFFNATFWTRMAKDKMAINGIGVLFFVIFYRTVVVSYKKQKKDYEDRIKIQKADAEERRKMKEMEAEMGWSEAGGDEDESELVKEGEENPYLKMTKEFMKSGARVRRAQNRRLPQYLERGVDVKFTDVAGLGKIRLELEEIVKFFTHGEMYRRRGVKIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFVEIYVGVGASRVRSLYQEARENAPSVVFIDELDAVGRKRGLIKGSGGQERDATLNQLLVCLDGFEGRGEVITIASTNRPDILDPALVRPGRFDRKIFIPKPGFIGRIEILKVHARKKPIAEDVDYEIVASMTDGMVGAELANIVEVAAINMMRDSRTEVTTDDLLQAAQMEERGMLDRKERSKEKWEQVAINEAAMAVAAMNLPNFDNIEYITIAPRAGRELGYVRTMLESIKFNDGMLTRQSLFDHITVQLAPRAADEMWFGKDQLSTIWAETADNARVAARMYMIGGLSDKYRGEIDLEAMKILNLCYERAKEILQQNKTLMDTLVNELVEKKTLTKEDIVRLVQLHGHAKPIPISVLDIRDAKRKELQEIASWHEPEPNNTAFYTQWAERNRFQIGDSLVFEYENDSVLTVEKFDYFNCDASQPITTFTNGKSTLNLDRSGPFYFISGTDEHCSHGQKLLVEVMAPHPIPASPPTSISNPPEGSSPIMAPANSPYSSDSIEASSSSMVVTSSFMLTLVTFGIVMMLAL*