AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0680033075.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0680033075.01.T01 MTR_8g098290 75.000 352 71 4 14 354 34 379 1.64e-167 478
MsG0680033075.01.T01 MTR_8g098290 75.000 352 71 4 14 354 34 379 4.59e-166 479
MsG0680033075.01.T01 MTR_5g010190 57.764 322 122 4 38 351 59 374 1.59e-116 349
MsG0680033075.01.T01 MTR_5g010190 57.764 322 122 4 38 351 59 374 2.36e-115 350
MsG0680033075.01.T01 MTR_8g098260 60.952 315 111 2 46 354 48 356 7.72e-112 357
MsG0680033075.01.T01 MTR_6g464540 50.502 299 89 7 49 346 50 290 5.99e-80 251
MsG0680033075.01.T01 MTR_6g007787 32.593 135 82 3 87 221 50 175 1.57e-13 73.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0680033075.01.T01 AT4G11560 54.682 267 115 1 47 313 99 359 3.05e-93 290
MsG0680033075.01.T01 AT4G11560 54.682 267 115 1 47 313 99 359 4.57e-92 290
MsG0680033075.01.T01 AT2G25120 41.297 293 137 4 28 320 49 306 4.47e-54 185
MsG0680033075.01.T01 AT4G23120 41.887 265 126 7 49 311 29 267 1.02e-50 176
MsG0680033075.01.T01 AT3G43990 43.684 190 102 1 49 238 54 238 9.21e-45 160
MsG0680033075.01.T01 AT3G48060 36.508 126 71 3 96 221 67 183 2.50e-16 82.4
MsG0680033075.01.T01 AT3G48060 36.508 126 71 3 96 221 67 183 2.50e-16 82.4
MsG0680033075.01.T01 AT3G48060 36.508 126 71 3 96 221 68 184 2.59e-16 82.4
MsG0680033075.01.T01 AT3G48050 36.508 126 71 3 96 221 67 183 2.96e-16 82.0
MsG0680033075.01.T01 AT3G48050 36.508 126 71 3 96 221 67 183 2.96e-16 82.0

Find 86 sgRNAs with CRISPR-Local

Find 171 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGTGAACCTGTTAGGGTTTC+CGG 0.183357 6:+55918986 MsG0680033075.01.T01:CDS
TGATCATCAAGCTTCCATTT+TGG 0.220360 6:-55920099 None:intergenic
ACCTGTGAGTTTGGTTATAA+TGG 0.237967 6:-55918850 None:intergenic
GCACAATTCCCTAGTGTTAC+TGG 0.271097 6:-55920568 None:intergenic
GCTAACTGATAAGTACTATA+TGG 0.278995 6:+55920360 MsG0680033075.01.T01:CDS
ACACAAATGAATTGAAATTA+TGG 0.283867 6:+55920335 MsG0680033075.01.T01:CDS
GGAGTTCTGTAGATTGAAAA+AGG 0.297259 6:-55920946 None:intergenic
GAAGGCATTAACAAAAGTTT+AGG 0.313579 6:+55920766 MsG0680033075.01.T01:CDS
CAATGAGTTGGATCCAAATA+TGG 0.319493 6:-55921118 None:intergenic
CTTCTATTAACCTGTGAGTT+TGG 0.327054 6:-55918859 None:intergenic
AACCCAATGGTGAACCTGTT+AGG 0.352184 6:+55918978 MsG0680033075.01.T01:CDS
TTCTCTAGAGCAACTACAAC+CGG 0.354366 6:-55920999 None:intergenic
ACCTTGATAATTGCAACATA+TGG 0.358350 6:-55919289 None:intergenic
CACTTTCTGCACAATAAATC+CGG 0.375147 6:-55920308 None:intergenic
GACACCAAACAATCCCAAAA+TGG 0.388982 6:+55920085 MsG0680033075.01.T01:CDS
TGATCAGGAAGGTCTGATTA+AGG 0.389736 6:+55920474 MsG0680033075.01.T01:CDS
CCTGTTAGGGTTTCCGGAAA+AGG 0.401434 6:+55918992 MsG0680033075.01.T01:CDS
ATCTGGAAGTTGTTTGTGTA+TGG 0.401990 6:-55920272 None:intergenic
TCAAAATAGTCTCCATTCTC+TGG 0.402820 6:+55920543 MsG0680033075.01.T01:CDS
TTCTTCGTCTTCTTCTTCAC+TGG 0.405788 6:-55918936 None:intergenic
ACTTTGTCTTTAGATTCATT+TGG 0.419159 6:-55920793 None:intergenic
GCGATGAGGCTCAAAGGAAT+TGG 0.431972 6:-55920593 None:intergenic
ACCCTAACAGGTTCACCATT+GGG 0.432881 6:-55918980 None:intergenic
ACCCAATGGTGAACCTGTTA+GGG 0.436541 6:+55918979 MsG0680033075.01.T01:CDS
GTCAAGTGATGAGGCGGAGA+AGG 0.441796 6:+55918895 MsG0680033075.01.T01:CDS
TTTCAGTCCTTCGATCTCCT+TGG 0.441799 6:+55919034 MsG0680033075.01.T01:CDS
CTGGCCAGATGTTGCTGTCC+CGG 0.444473 6:+55920980 MsG0680033075.01.T01:CDS
CTAACTGATAAGTACTATAT+GGG 0.448432 6:+55920361 MsG0680033075.01.T01:CDS
GTGTTACTGGTTCCAGAGAA+TGG 0.464490 6:-55920555 None:intergenic
GGTTCATCGGTCTCGATGTC+AGG 0.469686 6:-55920445 None:intergenic
ACTAAGTGGGGTCGGCTACA+TGG 0.470126 6:+55921064 MsG0680033075.01.T01:CDS
GTGAGTTTGGTTATAATGGA+TGG 0.471974 6:-55918846 None:intergenic
CGATGAACCTGCTACTGATC+AGG 0.473067 6:+55920459 MsG0680033075.01.T01:CDS
CCGGGATGTTGCTTACGATC+TGG 0.473615 6:-55920289 None:intergenic
ATTCTGCAGGAACTTCATCT+TGG 0.491335 6:-55920216 None:intergenic
ATCTGGCCAGGCAAAAGACT+TGG 0.493073 6:-55920967 None:intergenic
CTGCAGGAACTTCATCTTGG+TGG 0.495652 6:-55920213 None:intergenic
AACCCTAACAGGTTCACCAT+TGG 0.497694 6:-55918981 None:intergenic
ATTCATATACGAGTGTGTAT+TGG 0.501448 6:-55919060 None:intergenic
CCACTTAGTGGGATAAGGCT+TGG 0.501997 6:-55921050 None:intergenic
CGGGACAGCAACATCTGGCC+AGG 0.502301 6:-55920979 None:intergenic
ACAACCGGGACAGCAACATC+TGG 0.502564 6:-55920984 None:intergenic
GCCATATGTTGCAATTATCA+AGG 0.503425 6:+55919288 MsG0680033075.01.T01:CDS
CGACCCCACTTAGTGGGATA+AGG 0.504780 6:-55921055 None:intergenic
AGATTTAGAGGTCAATGAGT+TGG 0.506040 6:-55921130 None:intergenic
ATGTAGCCGACCCCACTTAG+TGG 0.509347 6:-55921062 None:intergenic
AATGGAAGCTTGATGATCAC+AGG 0.509765 6:+55920103 MsG0680033075.01.T01:CDS
GATAGGAGAAACTTAAAGAA+TGG 0.512473 6:+55920496 MsG0680033075.01.T01:CDS
TGAGTTTGGTTATAATGGAT+GGG 0.513488 6:-55918845 None:intergenic
GGCGGAGAAGGAGGAAGATA+AGG 0.529797 6:+55918907 MsG0680033075.01.T01:CDS
TGTACTTCAAGAAGTACCTT+CGG 0.544644 6:-55920817 None:intergenic
AAGTGATGAGGCGGAGAAGG+AGG 0.551251 6:+55918898 MsG0680033075.01.T01:CDS
AGACCTTCCTGATCAGTAGC+AGG 0.553622 6:-55920466 None:intergenic
CCAAGCCTTATCCCACTAAG+TGG 0.555227 6:+55921050 MsG0680033075.01.T01:CDS
TCTGATGCTATCAACAATGA+AGG 0.561050 6:+55920748 MsG0680033075.01.T01:CDS
CGACAAACCCTTGTCACGAT+GGG 0.562197 6:-55920650 None:intergenic
CAAGCCTTATCCCACTAAGT+GGG 0.565284 6:+55921051 MsG0680033075.01.T01:CDS
AGGAAGGTCTGATTAAGGAT+AGG 0.574826 6:+55920479 MsG0680033075.01.T01:CDS
TAATATGCGATGAGGCTCAA+AGG 0.579823 6:-55920599 None:intergenic
CTGATCAGTAGCAGGTTCAT+CGG 0.585277 6:-55920458 None:intergenic
CGAGTGTGTATTGGTCTCCA+AGG 0.587230 6:-55919051 None:intergenic
AGGAGATACCCATCGTGACA+AGG 0.593342 6:+55920642 MsG0680033075.01.T01:CDS
TTATGCATAACAGATTCTGC+AGG 0.595610 6:-55920229 None:intergenic
TCTCTGGAACCAGTAACACT+AGG 0.596217 6:+55920559 MsG0680033075.01.T01:CDS
TCCATTATAACCAAACTCAC+AGG 0.598608 6:+55918849 MsG0680033075.01.T01:CDS
CTCTGGAACCAGTAACACTA+GGG 0.598631 6:+55920560 MsG0680033075.01.T01:CDS
ACTTTCTGCACAATAAATCC+GGG 0.599657 6:-55920307 None:intergenic
GCTTGATGATCACAGGGCAG+TGG 0.605443 6:+55920110 MsG0680033075.01.T01:CDS
ATCTAAAGACAAAGTTCCGA+AGG 0.608846 6:+55920801 MsG0680033075.01.T01:CDS
CTTATCCCACTAAGTGGGGT+CGG 0.608874 6:+55921056 MsG0680033075.01.T01:CDS
CCAGATCGTAAGCAACATCC+CGG 0.610707 6:+55920289 MsG0680033075.01.T01:CDS
GTTGAAGAAGCTAAACCCAA+TGG 0.614967 6:+55918965 MsG0680033075.01.T01:CDS
TCTGGAAGTTGTTTGTGTAT+GGG 0.615838 6:-55920271 None:intergenic
TCGACAAACCCTTGTCACGA+TGG 0.616965 6:-55920651 None:intergenic
TCTCTAGAGCAACTACAACC+GGG 0.622627 6:-55920998 None:intergenic
TGTAGCCGACCCCACTTAGT+GGG 0.623805 6:-55921061 None:intergenic
GATGAAGTCAAGTGATGAGG+CGG 0.641900 6:+55918889 MsG0680033075.01.T01:CDS
TTGGTCTCCAAGGAGATCGA+AGG 0.643471 6:-55919041 None:intergenic
AAATTCACTAATATGCGATG+AGG 0.643725 6:-55920607 None:intergenic
GGAGATACCCATCGTGACAA+GGG 0.650994 6:+55920643 MsG0680033075.01.T01:CDS
AAAGATGAAGTCAAGTGATG+AGG 0.654157 6:+55918886 MsG0680033075.01.T01:CDS
ATCTGTTATGCATAAATGTG+TGG 0.655343 6:+55920237 MsG0680033075.01.T01:CDS
ATGGAAGCTTGATGATCACA+GGG 0.656842 6:+55920104 MsG0680033075.01.T01:CDS
CATTGTTGATAGCATCAGAA+CGG 0.659542 6:-55920744 None:intergenic
AAGCCTTATCCCACTAAGTG+GGG 0.671687 6:+55921052 MsG0680033075.01.T01:CDS
GAACCTGCTACTGATCAGGA+AGG 0.702165 6:+55920463 MsG0680033075.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAAAAAAAAAAAAAGAGG+AGG - Chr6:55919101-55919120 None:intergenic 15.0%
!! AAAAGTTTAAGAACTAAATT+TGG - Chr6:55919162-55919181 None:intergenic 15.0%
!! GGAAAAAAAAAAAAAAAAAG+AGG - Chr6:55919104-55919123 None:intergenic 15.0%
!! TGTTATAAACTTATAATGAT+AGG + Chr6:55920004-55920023 MsG0680033075.01.T01:intron 15.0%
!!! TTTTTTAATTTTTCTCTCAT+CGG - Chr6:55920710-55920729 None:intergenic 15.0%
!! ACACAAATGAATTGAAATTA+TGG + Chr6:55920335-55920354 MsG0680033075.01.T01:CDS 20.0%
!! ATCATAAGTTAAAAAGCTTA+AGG - Chr6:55920912-55920931 None:intergenic 20.0%
!! CTAAAAAAAAAAAAACAGAC+AGG - Chr6:55919644-55919663 None:intergenic 20.0%
!! GATATATTGTTAGTGTATAA+AGG + Chr6:55919482-55919501 MsG0680033075.01.T01:intron 20.0%
!! GATGAGAGAAAAATTAAAAA+AGG + Chr6:55920709-55920728 MsG0680033075.01.T01:CDS 20.0%
!!! CTGTCTGTTTTTTTTTTTTT+AGG + Chr6:55919642-55919661 MsG0680033075.01.T01:intron 20.0%
!!! TGTGTGATTTTTAATTATCA+TGG - Chr6:55919841-55919860 None:intergenic 20.0%
! ACTTTGTCTTTAGATTCATT+TGG - Chr6:55920796-55920815 None:intergenic 25.0%
! ATCAGAAAATAGAAAAGAGA+AGG - Chr6:55920041-55920060 None:intergenic 25.0%
! CAAAAAACTCATCAATGTTT+AGG + Chr6:55920415-55920434 MsG0680033075.01.T01:CDS 25.0%
! CTAAACTGAAAATAACAAGA+AGG - Chr6:55919701-55919720 None:intergenic 25.0%
! CTAACTGATAAGTACTATAT+GGG + Chr6:55920361-55920380 MsG0680033075.01.T01:CDS 25.0%
! GTTCTATCAAAAACCATATT+TGG + Chr6:55921105-55921124 MsG0680033075.01.T01:CDS 25.0%
! TCAGAAAATAGAAAAGAGAA+GGG - Chr6:55920040-55920059 None:intergenic 25.0%
! TTATTAATGGGATGATATTG+TGG + Chr6:55919571-55919590 MsG0680033075.01.T01:intron 25.0%
!! ACTTAAAGAATGGTGTTTTA+AGG + Chr6:55920506-55920525 MsG0680033075.01.T01:CDS 25.0%
!! CTACAACTTATTGTTATTCT+TGG + Chr6:55919203-55919222 MsG0680033075.01.T01:intron 25.0%
!! TTATATACTAGAAGTGCATA+TGG + Chr6:55919367-55919386 MsG0680033075.01.T01:intron 25.0%
!!! ACTTTTGTTTTTTGTTCTCT+AGG + Chr6:55919802-55919821 MsG0680033075.01.T01:intron 25.0%
!!! CTTAAAGAATGGTGTTTTAA+GGG + Chr6:55920507-55920526 MsG0680033075.01.T01:CDS 25.0%
AAATTCACTAATATGCGATG+AGG - Chr6:55920610-55920629 None:intergenic 30.0%
AGAAAATAGAAAAGAGAAGG+GGG - Chr6:55920038-55920057 None:intergenic 30.0%
AGTTAAAAAGCTTAAGGAAG+AGG - Chr6:55920906-55920925 None:intergenic 30.0%
ATCTGTTATGCATAAATGTG+TGG + Chr6:55920237-55920256 MsG0680033075.01.T01:CDS 30.0%
ATCTTGTTCTGTTTATGTGT+TGG + Chr6:55919770-55919789 MsG0680033075.01.T01:intron 30.0%
ATTCATATACGAGTGTGTAT+TGG - Chr6:55919063-55919082 None:intergenic 30.0%
CAGAAAATAGAAAAGAGAAG+GGG - Chr6:55920039-55920058 None:intergenic 30.0%
CCAAATGAAGCAGAAAAAAA+GGG + Chr6:55920142-55920161 MsG0680033075.01.T01:CDS 30.0%
GATAGGAGAAACTTAAAGAA+TGG + Chr6:55920496-55920515 MsG0680033075.01.T01:CDS 30.0%
GCTAACTGATAAGTACTATA+TGG + Chr6:55920360-55920379 MsG0680033075.01.T01:CDS 30.0%
GTTAAAAAGCTTAAGGAAGA+GGG - Chr6:55920905-55920924 None:intergenic 30.0%
TCCAAATGAAGCAGAAAAAA+AGG + Chr6:55920141-55920160 MsG0680033075.01.T01:CDS 30.0%
TCCCATTAATAAATCAACCA+CGG - Chr6:55919563-55919582 None:intergenic 30.0%
! ACCTTGATAATTGCAACATA+TGG - Chr6:55919292-55919311 None:intergenic 30.0%
! TTATTTTCAGTTTAGCAGTC+CGG + Chr6:55919706-55919725 MsG0680033075.01.T01:intron 30.0%
! TTTTATGTCTCTTCCTTTTC+CGG - Chr6:55919008-55919027 None:intergenic 30.0%
!! GAAGGCATTAACAAAAGTTT+AGG + Chr6:55920766-55920785 MsG0680033075.01.T01:CDS 30.0%
!! TGAGTTTGGTTATAATGGAT+GGG - Chr6:55918848-55918867 None:intergenic 30.0%
!! TTTCTTGGCTTTTGATAACA+AGG + Chr6:55919917-55919936 MsG0680033075.01.T01:intron 30.0%
AAAGATGAAGTCAAGTGATG+AGG + Chr6:55918886-55918905 MsG0680033075.01.T01:CDS 35.0%
AATGAAGCAGAAAAAAAGGG+AGG + Chr6:55920145-55920164 MsG0680033075.01.T01:CDS 35.0%
ACATCGAAAGCCAAAATAAC+CGG - Chr6:55919728-55919747 None:intergenic 35.0%
ACCTGTGAGTTTGGTTATAA+TGG - Chr6:55918853-55918872 None:intergenic 35.0%
ACGTGTTGTATTTGGCATAT+CGG + Chr6:55919884-55919903 MsG0680033075.01.T01:intron 35.0%
ACTTTCTGCACAATAAATCC+GGG - Chr6:55920310-55920329 None:intergenic 35.0%
ATCTAAAGACAAAGTTCCGA+AGG + Chr6:55920801-55920820 MsG0680033075.01.T01:CDS 35.0%
ATCTGGAAGTTGTTTGTGTA+TGG - Chr6:55920275-55920294 None:intergenic 35.0%
ATGATATTGTGGACAAGATC+AGG + Chr6:55919582-55919601 MsG0680033075.01.T01:intron 35.0%
CACTTTCTGCACAATAAATC+CGG - Chr6:55920311-55920330 None:intergenic 35.0%
CCCATTAATAAATCAACCAC+GGG - Chr6:55919562-55919581 None:intergenic 35.0%
CCTGACAAAAAAAACATCTC+TGG - Chr6:55920066-55920085 None:intergenic 35.0%
CTTCTATTAACCTGTGAGTT+TGG - Chr6:55918862-55918881 None:intergenic 35.0%
GAATATGCACGTGTTGTATT+TGG + Chr6:55919876-55919895 MsG0680033075.01.T01:intron 35.0%
GCCATATGTTGCAATTATCA+AGG + Chr6:55919288-55919307 MsG0680033075.01.T01:CDS 35.0%
GGAGTTCTGTAGATTGAAAA+AGG - Chr6:55920949-55920968 None:intergenic 35.0%
TCAAAATAGTCTCCATTCTC+TGG + Chr6:55920543-55920562 MsG0680033075.01.T01:CDS 35.0%
TCCATTATAACCAAACTCAC+AGG + Chr6:55918849-55918868 MsG0680033075.01.T01:CDS 35.0%
TCTGATGCTATCAACAATGA+AGG + Chr6:55920748-55920767 MsG0680033075.01.T01:CDS 35.0%
TCTGGAAGTTGTTTGTGTAT+GGG - Chr6:55920274-55920293 None:intergenic 35.0%
TTATCAAAAGCCAAGAAACG+AGG - Chr6:55919915-55919934 None:intergenic 35.0%
TTATGCATAACAGATTCTGC+AGG - Chr6:55920232-55920251 None:intergenic 35.0%
TTCGCATGTTGTCACTATTT+GGG + Chr6:55919132-55919151 MsG0680033075.01.T01:intron 35.0%
TTGTTCTGTTTATGTGTTGG+TGG + Chr6:55919773-55919792 MsG0680033075.01.T01:intron 35.0%
TTTCGCATGTTGTCACTATT+TGG + Chr6:55919131-55919150 MsG0680033075.01.T01:intron 35.0%
! AGGTTTTGCCTCTATTTGTT+TGG + Chr6:55919662-55919681 MsG0680033075.01.T01:intron 35.0%
! CAATGAGTTGGATCCAAATA+TGG - Chr6:55921121-55921140 None:intergenic 35.0%
! CCCGTGGTTGATTTATTAAT+GGG + Chr6:55919559-55919578 MsG0680033075.01.T01:intron 35.0%
! GATCATCAAGCTTCCATTTT+GGG - Chr6:55920101-55920120 None:intergenic 35.0%
! GGCTTTTGATATTTAACCTC+AGG - Chr6:55919271-55919290 None:intergenic 35.0%
! GTGAGTTTGGTTATAATGGA+TGG - Chr6:55918849-55918868 None:intergenic 35.0%
! TGATCATCAAGCTTCCATTT+TGG - Chr6:55920102-55920121 None:intergenic 35.0%
!! CATTGTTGATAGCATCAGAA+CGG - Chr6:55920747-55920766 None:intergenic 35.0%
!! TGTACTTCAAGAAGTACCTT+CGG - Chr6:55920820-55920839 None:intergenic 35.0%
!!! AAAGAATGGTGTTTTAAGGG+AGG + Chr6:55920510-55920529 MsG0680033075.01.T01:CDS 35.0%
!!! CCAGAGATGTTTTTTTTGTC+AGG + Chr6:55920063-55920082 MsG0680033075.01.T01:intron 35.0%
!!! CCCTTTTTTTCTGCTTCATT+TGG - Chr6:55920145-55920164 None:intergenic 35.0%
!!! GGTTATAATGGATGGGTTTT+TGG - Chr6:55918841-55918860 None:intergenic 35.0%
!!! GTGAATTTTAAAGCGCTAAC+AGG + Chr6:55920622-55920641 MsG0680033075.01.T01:CDS 35.0%
ACCTCAGGAAAAAGAATCAC+AGG - Chr6:55919256-55919275 None:intergenic 40.0%
AGGAAGGTCTGATTAAGGAT+AGG + Chr6:55920479-55920498 MsG0680033075.01.T01:CDS 40.0%
ATACAACACGTGCATATTCC+AGG - Chr6:55919875-55919894 None:intergenic 40.0%
ATTCTGCAGGAACTTCATCT+TGG - Chr6:55920219-55920238 None:intergenic 40.0%
CCTCAGGAAAAAGAATCACA+GGG - Chr6:55919255-55919274 None:intergenic 40.0%
CGTGTTGTATTTGGCATATC+GGG + Chr6:55919885-55919904 MsG0680033075.01.T01:intron 40.0%
GACAACATGCGAAAAGCAAA+AGG - Chr6:55919125-55919144 None:intergenic 40.0%
GACACCAAACAATCCCAAAA+TGG + Chr6:55920085-55920104 MsG0680033075.01.T01:CDS 40.0%
GCACAACACCAAACAAATAG+AGG - Chr6:55919673-55919692 None:intergenic 40.0%
GTTGAAGAAGCTAAACCCAA+TGG + Chr6:55918965-55918984 MsG0680033075.01.T01:CDS 40.0%
TAATATGCGATGAGGCTCAA+AGG - Chr6:55920602-55920621 None:intergenic 40.0%
TACAACACGTGCATATTCCA+GGG - Chr6:55919874-55919893 None:intergenic 40.0%
TCACACCAAAAAAACACCCA+AGG - Chr6:55919751-55919770 None:intergenic 40.0%
TGATCAGGAAGGTCTGATTA+AGG + Chr6:55920474-55920493 MsG0680033075.01.T01:CDS 40.0%
TGTGATTGTGATCTCTTGTG+CGG + Chr6:55920844-55920863 MsG0680033075.01.T01:intron 40.0%
TTCTTCGTCTTCTTCTTCAC+TGG - Chr6:55918939-55918958 None:intergenic 40.0%
! AATGGAAGCTTGATGATCAC+AGG + Chr6:55920103-55920122 MsG0680033075.01.T01:CDS 40.0%
! ATGGAAGCTTGATGATCACA+GGG + Chr6:55920104-55920123 MsG0680033075.01.T01:CDS 40.0%
! GCCCGTGGTTGATTTATTAA+TGG + Chr6:55919558-55919577 MsG0680033075.01.T01:intron 40.0%
! GTTTAGCAGTCCGGTTATTT+TGG + Chr6:55919715-55919734 MsG0680033075.01.T01:intron 40.0%
!! AGTGTATAAAGGTGTTGTCG+TGG + Chr6:55919493-55919512 MsG0680033075.01.T01:intron 40.0%
!! TTCTCTAGAGCAACTACAAC+CGG - Chr6:55921002-55921021 None:intergenic 40.0%
!!! ATTTTGGCTTTCGATGTCCT+TGG + Chr6:55919731-55919750 MsG0680033075.01.T01:intron 40.0%
!!! GATGTCCTTGGGTGTTTTTT+TGG + Chr6:55919743-55919762 MsG0680033075.01.T01:intron 40.0%
!!! GCTTCCATTTTGGGATTGTT+TGG - Chr6:55920092-55920111 None:intergenic 40.0%
!!! TTTTGGCTTTCGATGTCCTT+GGG + Chr6:55919732-55919751 MsG0680033075.01.T01:intron 40.0%
AAAAAAAGGGAGGTGGTAGC+TGG + Chr6:55920155-55920174 MsG0680033075.01.T01:CDS 45.0%
AACCCAATGGTGAACCTGTT+AGG + Chr6:55918978-55918997 MsG0680033075.01.T01:CDS 45.0%
AACCCTAACAGGTTCACCAT+TGG - Chr6:55918984-55919003 None:intergenic 45.0%
ACCCAATGGTGAACCTGTTA+GGG + Chr6:55918979-55918998 MsG0680033075.01.T01:CDS 45.0%
ACCCTAACAGGTTCACCATT+GGG - Chr6:55918983-55919002 None:intergenic 45.0%
CTGATCAGTAGCAGGTTCAT+CGG - Chr6:55920461-55920480 None:intergenic 45.0%
GAAGCAGAAAAAAAGGGAGG+TGG + Chr6:55920148-55920167 MsG0680033075.01.T01:CDS 45.0%
GATGAAGTCAAGTGATGAGG+CGG + Chr6:55918889-55918908 MsG0680033075.01.T01:CDS 45.0%
GCACAATTCCCTAGTGTTAC+TGG - Chr6:55920571-55920590 None:intergenic 45.0%
GTGTTACCTACACTTTCTGC+AGG + Chr6:55919225-55919244 MsG0680033075.01.T01:intron 45.0%
TCACACAAGTTAGCAATCCC+TGG + Chr6:55919854-55919873 MsG0680033075.01.T01:intron 45.0%
TTACCTACACTTTCTGCAGG+AGG + Chr6:55919228-55919247 MsG0680033075.01.T01:intron 45.0%
TTTCAGTCCTTCGATCTCCT+TGG + Chr6:55919034-55919053 MsG0680033075.01.T01:CDS 45.0%
! AAGCCTTATCCCACTAAGTG+GGG + Chr6:55921052-55921071 MsG0680033075.01.T01:CDS 45.0%
! AGAACTCCAAGTCTTTTGCC+TGG + Chr6:55920961-55920980 MsG0680033075.01.T01:CDS 45.0%
! CAAGCCTTATCCCACTAAGT+GGG + Chr6:55921051-55921070 MsG0680033075.01.T01:CDS 45.0%
! CCCTGTGATTCTTTTTCCTG+AGG + Chr6:55919252-55919271 MsG0680033075.01.T01:CDS 45.0%
!! CTCTGGAACCAGTAACACTA+GGG + Chr6:55920560-55920579 MsG0680033075.01.T01:CDS 45.0%
!! GTGTTACTGGTTCCAGAGAA+TGG - Chr6:55920558-55920577 None:intergenic 45.0%
!! TCTCTAGAGCAACTACAACC+GGG - Chr6:55921001-55921020 None:intergenic 45.0%
!! TCTCTGGAACCAGTAACACT+AGG + Chr6:55920559-55920578 MsG0680033075.01.T01:CDS 45.0%
!!! TATATAATTTATTCTAAAAA+AGG - Chr6:55919354-55919373 None:intergenic 5.0%
AGACCTTCCTGATCAGTAGC+AGG - Chr6:55920469-55920488 None:intergenic 50.0%
AGGAGATACCCATCGTGACA+AGG + Chr6:55920642-55920661 MsG0680033075.01.T01:CDS 50.0%
ATCTGGCCAGGCAAAAGACT+TGG - Chr6:55920970-55920989 None:intergenic 50.0%
CCACTTAGTGGGATAAGGCT+TGG - Chr6:55921053-55921072 None:intergenic 50.0%
CCAGATCGTAAGCAACATCC+CGG + Chr6:55920289-55920308 MsG0680033075.01.T01:CDS 50.0%
CCTGTTAGGGTTTCCGGAAA+AGG + Chr6:55918992-55919011 MsG0680033075.01.T01:CDS 50.0%
CGACAAACCCTTGTCACGAT+GGG - Chr6:55920653-55920672 None:intergenic 50.0%
CGATGAACCTGCTACTGATC+AGG + Chr6:55920459-55920478 MsG0680033075.01.T01:CDS 50.0%
CTGCAGGAACTTCATCTTGG+TGG - Chr6:55920216-55920235 None:intergenic 50.0%
CTTATCCCACTAAGTGGGGT+CGG + Chr6:55921056-55921075 MsG0680033075.01.T01:CDS 50.0%
GAACCTGCTACTGATCAGGA+AGG + Chr6:55920463-55920482 MsG0680033075.01.T01:CDS 50.0%
GCGATGAGGCTCAAAGGAAT+TGG - Chr6:55920596-55920615 None:intergenic 50.0%
GGAGATACCCATCGTGACAA+GGG + Chr6:55920643-55920662 MsG0680033075.01.T01:CDS 50.0%
GGTGAACCTGTTAGGGTTTC+CGG + Chr6:55918986-55919005 MsG0680033075.01.T01:CDS 50.0%
GTGGACAAGATCAGGCAGAT+GGG + Chr6:55919590-55919609 MsG0680033075.01.T01:intron 50.0%
TCGACAAACCCTTGTCACGA+TGG - Chr6:55920654-55920673 None:intergenic 50.0%
TGTGGACAAGATCAGGCAGA+TGG + Chr6:55919589-55919608 MsG0680033075.01.T01:intron 50.0%
TTGGTCTCCAAGGAGATCGA+AGG - Chr6:55919044-55919063 None:intergenic 50.0%
! ATCGGGTTGTCCTCGTTTCT+TGG + Chr6:55919902-55919921 MsG0680033075.01.T01:intron 50.0%
! CCAAGCCTTATCCCACTAAG+TGG + Chr6:55921050-55921069 MsG0680033075.01.T01:CDS 50.0%
! CCTTTTCCGGAAACCCTAAC+AGG - Chr6:55918995-55919014 None:intergenic 50.0%
! CGAGTGTGTATTGGTCTCCA+AGG - Chr6:55919054-55919073 None:intergenic 50.0%
!! GATTTTCGAGAATTCGCCCG+TGG + Chr6:55919543-55919562 MsG0680033075.01.T01:intron 50.0%
AAGTGATGAGGCGGAGAAGG+AGG + Chr6:55918898-55918917 MsG0680033075.01.T01:CDS 55.0%
ACAACCGGGACAGCAACATC+TGG - Chr6:55920987-55921006 None:intergenic 55.0%
ACTAAGTGGGGTCGGCTACA+TGG + Chr6:55921064-55921083 MsG0680033075.01.T01:CDS 55.0%
ATGTAGCCGACCCCACTTAG+TGG - Chr6:55921065-55921084 None:intergenic 55.0%
CAAGATCAGGCAGATGGGCA+AGG + Chr6:55919595-55919614 MsG0680033075.01.T01:intron 55.0%
CGACCCCACTTAGTGGGATA+AGG - Chr6:55921058-55921077 None:intergenic 55.0%
GGCGGAGAAGGAGGAAGATA+AGG + Chr6:55918907-55918926 MsG0680033075.01.T01:CDS 55.0%
GGTTCATCGGTCTCGATGTC+AGG - Chr6:55920448-55920467 None:intergenic 55.0%
GTCAAGTGATGAGGCGGAGA+AGG + Chr6:55918895-55918914 MsG0680033075.01.T01:CDS 55.0%
TGTAGCCGACCCCACTTAGT+GGG - Chr6:55921064-55921083 None:intergenic 55.0%
! CCGGGATGTTGCTTACGATC+TGG - Chr6:55920292-55920311 None:intergenic 55.0%
! GCTTGATGATCACAGGGCAG+TGG + Chr6:55920110-55920129 MsG0680033075.01.T01:CDS 55.0%
! GGTCCTCCTGCAGAAAGTGT+AGG - Chr6:55919234-55919253 None:intergenic 55.0%
AGATGGGCAAGGTGCAGCTG+CGG + Chr6:55919606-55919625 MsG0680033075.01.T01:intron 60.0%
CTGGCCAGATGTTGCTGTCC+CGG + Chr6:55920980-55920999 MsG0680033075.01.T01:CDS 60.0%
CGGGACAGCAACATCTGGCC+AGG - Chr6:55920982-55921001 None:intergenic 65.0%
TGGGCAAGGTGCAGCTGCGG+CGG + Chr6:55919609-55919628 MsG0680033075.01.T01:intron 70.0%
Chromosome Type Strat End Strand Name
Chr6 gene 55918830 55921141 55918830 ID=MsG0680033075.01;Name=MsG0680033075.01
Chr6 mRNA 55918830 55921141 55918830 ID=MsG0680033075.01.T01;Parent=MsG0680033075.01;Name=MsG0680033075.01.T01;_AED=0.30;_eAED=0.34;_QI=0|0|0|1|0|0|4|0|441
Chr6 exon 55918830 55919072 55918830 ID=MsG0680033075.01.T01:exon:16984;Parent=MsG0680033075.01.T01
Chr6 exon 55919247 55919309 55919247 ID=MsG0680033075.01.T01:exon:16983;Parent=MsG0680033075.01.T01
Chr6 exon 55920067 55920860 55920067 ID=MsG0680033075.01.T01:exon:16982;Parent=MsG0680033075.01.T01
Chr6 exon 55920916 55921141 55920916 ID=MsG0680033075.01.T01:exon:16981;Parent=MsG0680033075.01.T01
Chr6 CDS 55918830 55919072 55918830 ID=MsG0680033075.01.T01:cds;Parent=MsG0680033075.01.T01
Chr6 CDS 55919247 55919309 55919247 ID=MsG0680033075.01.T01:cds;Parent=MsG0680033075.01.T01
Chr6 CDS 55920067 55920860 55920067 ID=MsG0680033075.01.T01:cds;Parent=MsG0680033075.01.T01
Chr6 CDS 55920916 55921141 55920916 ID=MsG0680033075.01.T01:cds;Parent=MsG0680033075.01.T01
Gene Sequence

>MsG0680033075.01.T01

TTGTTATTCCAAAAACCCATCCATTATAACCAAACTCACAGGTTAATAGAAGAAGAAAAGATGAAGTCAAGTGATGAGGCGGAGAAGGAGGAAGATAAGGAACTGTCCAGTGAAGAAGAAGACGAAGAATCGCAAGTTGAAGAAGCTAAACCCAATGGTGAACCTGTTAGGGTTTCCGGAAAAGGAAGAGACATAAAAATGCATTTTCAGTCCTTCGATCTCCTTGGAGACCAATACACACTCGAGGACCCTGTGATTCTTTTTCCTGAGGTTAAATATCAAAAGCCATATGTTGCAATTATCAAGAGATGTTTTTTTTGTCAGGACACCAAACAATCCCAAAATGGAAGCTTGATGATCACAGGGCAGTGGTTCTATCTTCCAAATGAAGCAGAAAAAAAGGGAGGTGGTAGCTGGAAATCGAGTGACAACAGAGAGTTGTTTTATAGTTTCCACCAAGATGAAGTTCCTGCAGAATCTGTTATGCATAAATGTGTGGTGCATTTTGTTCCCATACACAAACAACTTCCAGATCGTAAGCAACATCCCGGATTTATTGTGCAGAAAGTGTATGACACAAATGAATTGAAATTATGGAAGCTAACTGATAAGTACTATATGGGCAATAATCAACAAGAAATTGATGAGCTTGTTCAAAAAACTCATCAATGTTTAGGTGAACTACCTGACATCGAGACCGATGAACCTGCTACTGATCAGGAAGGTCTGATTAAGGATAGGAGAAACTTAAAGAATGGTGTTTTAAGGGAGGATGAAACATCTCAAAATAGTCTCCATTCTCTGGAACCAGTAACACTAGGGAATTGTGCAACCAATTCCTTTGAGCCTCATCGCATATTAGTGAATTTTAAAGCGCTAACAGGAGATACCCATCGTGACAAGGGTTTGTCGATGTTGCTTCAAAATGTTCAATACTTGTTTGATACCGATGAGAGAAAAATTAAAAAAGGCAAATGTTGTGACCGTTCTGATGCTATCAACAATGAAGGCATTAACAAAAGTTTAGGAATACCAAATGAATCTAAAGACAAAGTTCCGAAGGTACTTCTTGAAGTACACATTTGTGATTGTGATCTCTTCTTTTTAACTTATGATGAATTCATCTGTTACCTTTTTCAATCTACAGAACTCCAAGTCTTTTGCCTGGCCAGATGTTGCTGTCCCGGTTGTAGTTGCTCTAGAGAAAGCTACATACAAACAACAACAACAACAACCAAGCCTTATCCCACTAAGTGGGGTCGGCTACATGGATCAAATGACGCTATAGTGTTCTATCAAAAACCATATTTGGATCCAACTCATTGA
Protein sequence

>MsG0680033075.01.T01

LLFQKPIHYNQTHRLIEEEKMKSSDEAEKEEDKELSSEEEDEESQVEEAKPNGEPVRVSGKGRDIKMHFQSFDLLGDQYTLEDPVILFPEVKYQKPYVAIIKRCFFCQDTKQSQNGSLMITGQWFYLPNEAEKKGGGSWKSSDNRELFYSFHQDEVPAESVMHKCVVHFVPIHKQLPDRKQHPGFIVQKVYDTNELKLWKLTDKYYMGNNQQEIDELVQKTHQCLGELPDIETDEPATDQEGLIKDRRNLKNGVLREDETSQNSLHSLEPVTLGNCATNSFEPHRILVNFKALTGDTHRDKGLSMLLQNVQYLFDTDERKIKKGKCCDRSDAINNEGINKSLGIPNESKDKVPKVLLEVHICDCDLFFLTYDEFICYLFQSTELQVFCLARCCCPGCSCSRESYIQTTTTTTKPYPTKWGRLHGSNDAIVFYQKPYLDPTH*