AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0680032801.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0680032801.01.T01 MTR_8g098290 64.550 378 73 7 26 344 70 445 9.65e-159 452
MsG0680032801.01.T01 MTR_8g098290 66.761 352 60 4 26 320 70 421 4.56e-156 450
MsG0680032801.01.T01 MTR_8g098260 56.410 351 97 3 26 320 48 398 2.00e-109 347
MsG0680032801.01.T01 MTR_5g010190 49.861 359 122 5 18 318 59 417 1.50e-108 325
MsG0680032801.01.T01 MTR_5g010190 49.861 359 122 5 18 318 59 417 2.32e-107 326
MsG0680032801.01.T01 MTR_6g464540 43.658 339 79 7 29 320 50 323 2.10e-74 234
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0680032801.01.T01 AT4G11560 46.945 311 128 3 38 320 134 435 1.82e-87 271
MsG0680032801.01.T01 AT4G11560 46.926 309 127 3 40 320 136 435 2.61e-86 271
MsG0680032801.01.T01 AT4G23120 37.785 307 109 11 38 315 62 315 8.03e-44 154
MsG0680032801.01.T01 AT2G25120 35.410 305 112 6 38 315 99 345 2.10e-43 154
MsG0680032801.01.T01 AT3G43990 42.073 164 57 4 19 144 33 196 3.17e-28 113
MsG0680032801.01.T01 AT3G48060 40.789 76 44 1 52 127 67 141 2.61e-11 65.5
MsG0680032801.01.T01 AT3G48060 40.789 76 44 1 52 127 67 141 2.61e-11 65.5
MsG0680032801.01.T01 AT3G48060 40.789 76 44 1 52 127 68 142 2.61e-11 65.5
MsG0680032801.01.T01 AT3G48050 40.789 76 44 1 52 127 67 141 2.71e-11 65.5
MsG0680032801.01.T01 AT3G48050 40.789 76 44 1 52 127 67 141 2.71e-11 65.5

Find 64 sgRNAs with CRISPR-Local

Find 161 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCACAATTCCCTAGTGTTAT+TGG 0.204834 6:+49903121 None:intergenic
TGATCATCAAGCTTCCATTT+TGG 0.224274 6:+49903580 None:intergenic
TTTCTTCATGTTTCTCTCAT+TGG 0.246088 6:+49902982 None:intergenic
AAACATTTAACAATCCTTAC+TGG 0.290809 6:+49902600 None:intergenic
AACAAAAGCTACGGCAGTTT+TGG 0.301302 6:-49902653 MsG0680032801.01.T01:CDS
GAAGGCATTAACAAAAGTTT+AGG 0.313579 6:-49902923 MsG0680032801.01.T01:CDS
TTCTCTAGAGCAACAATAAC+CGG 0.315935 6:+49902717 None:intergenic
AACCCATTGGTGAACCTGTT+AGG 0.325935 6:-49904727 MsG0680032801.01.T01:CDS
GGTTCATCGGTCTCGATATC+AGG 0.370055 6:+49903244 None:intergenic
GACATCACACTATCCCAAAA+TGG 0.378411 6:-49903594 MsG0680032801.01.T01:CDS
CGATCAGGAAGGTCTGATTA+AGG 0.380889 6:-49903215 MsG0680032801.01.T01:CDS
ATCTGGAAGTTGTTTGTGTA+TGG 0.401990 6:+49903407 None:intergenic
GTGTTATTGGTTCCAGAGAA+TGG 0.409536 6:+49903134 None:intergenic
TCGAAATAGTCTCCATTCTC+TGG 0.411878 6:-49903146 MsG0680032801.01.T01:CDS
ACTTTGTCTTTAGATTCATA+TGG 0.415781 6:+49902896 None:intergenic
ACCCATTGGTGAACCTGTTA+GGG 0.418504 6:-49904726 MsG0680032801.01.T01:intron
TTCTTCGTCTTCTTCTTCAC+TGG 0.423272 6:+49904769 None:intergenic
GTCAAGTGATGAGGCGGAGA+AGG 0.441796 6:-49904810 MsG0680032801.01.T01:CDS
TTGGTATTTAATCTCAAGGT+TGG 0.445366 6:-49902634 MsG0680032801.01.T01:CDS
ACCCTAACAGGTTCACCAAT+GGG 0.460362 6:+49904725 None:intergenic
CCAGATCGTAAGCAACATCC+TGG 0.464572 6:-49903390 MsG0680032801.01.T01:CDS
CGATGAACCTGCTACCGATC+AGG 0.478725 6:-49903230 MsG0680032801.01.T01:CDS
CCAGGATGTTGCTTACGATC+TGG 0.481989 6:+49903390 None:intergenic
ACCTTGATAATTGCAACATA+CGG 0.483692 6:+49904427 None:intergenic
CTGGCCAGATGTTGCTGTCC+CGG 0.488917 6:-49902736 MsG0680032801.01.T01:CDS
ACCTCAGGCAAAAGAAGCAC+AGG 0.490058 6:+49904463 None:intergenic
ATTCTGCAGGAACTTCATCT+TGG 0.491335 6:+49903463 None:intergenic
CTGCAGGAACTTCATCTTGG+TGG 0.495652 6:+49903466 None:intergenic
ATAACCGGGACAGCAACATC+TGG 0.512094 6:+49902732 None:intergenic
GCCGTATGTTGCAATTATCA+AGG 0.523913 6:-49904428 MsG0680032801.01.T01:intron
AGACCTTCCTGATCGGTAGC+AGG 0.527053 6:+49903223 None:intergenic
GGCGGAGAAGGAGGAAGATA+AGG 0.529797 6:-49904798 MsG0680032801.01.T01:CDS
TCTGATGCTATCAGCAATGA+AGG 0.533175 6:-49902941 MsG0680032801.01.T01:CDS
ATCTGGCCAGACAAAAGACT+TGG 0.549513 6:+49902749 None:intergenic
AAGTGATGAGGCGGAGAAGG+AGG 0.551251 6:-49904807 MsG0680032801.01.T01:CDS
GTTGAAGAAGCTAAACCCAT+TGG 0.559350 6:-49904740 MsG0680032801.01.T01:CDS
CGACAAACCCTTGTCACGAT+GGG 0.562197 6:+49903039 None:intergenic
TCTCTGGAACCAATAACACT+AGG 0.567321 6:-49903130 MsG0680032801.01.T01:CDS
TAAAATTCACTAATATGCGA+TGG 0.571172 6:+49903080 None:intergenic
CTGATCGGTAGCAGGTTCAT+CGG 0.574816 6:+49903231 None:intergenic
AGGAAGGTCTGATTAAGGAT+AGG 0.574826 6:-49903210 MsG0680032801.01.T01:CDS
CTCTGGAACCAATAACACTA+GGG 0.575359 6:-49903129 MsG0680032801.01.T01:CDS
GCTTGATGATCACATGGCAG+TGG 0.576046 6:-49903569 MsG0680032801.01.T01:CDS
AACCCTAACAGGTTCACCAA+TGG 0.581846 6:+49904724 None:intergenic
AGAAGTACAAACAAAAGCTA+CGG 0.591456 6:-49902662 MsG0680032801.01.T01:CDS
CTTAATCAGACCTTCCTGAT+CGG 0.591796 6:+49903216 None:intergenic
AGGAGATACCCATCGTGACA+AGG 0.593342 6:-49903047 MsG0680032801.01.T01:CDS
TTATGCATAACAGATTCTGC+AGG 0.595610 6:+49903450 None:intergenic
CAGATCGTAAGCAACATCCT+GGG 0.603869 6:-49903389 MsG0680032801.01.T01:CDS
ATCTAAAGACAAAGTTCCGA+AGG 0.608846 6:-49902888 MsG0680032801.01.T01:intron
TAATATGCGATGGTGCTCAA+AGG 0.610864 6:+49903090 None:intergenic
TCTGGAAGTTGTTTGTGTAT+GGG 0.615838 6:+49903408 None:intergenic
TCGACAAACCCTTGTCACGA+TGG 0.616965 6:+49903038 None:intergenic
TCTCTAGAGCAACAATAACC+GGG 0.623322 6:+49902718 None:intergenic
GATGAAGTCAAGTGATGAGG+CGG 0.641900 6:-49904816 MsG0680032801.01.T01:CDS
GGAGATACCCATCGTGACAA+GGG 0.650994 6:-49903046 MsG0680032801.01.T01:CDS
ATGGAAGCTTGATGATCACA+TGG 0.652519 6:-49903575 MsG0680032801.01.T01:CDS
AAAGATGAAGTCAAGTGATG+AGG 0.654157 6:-49904819 None:intergenic
ATCTGTTATGCATAAATGTG+TGG 0.655343 6:-49903442 MsG0680032801.01.T01:CDS
CCTCAGGCAAAAGAAGCACA+GGG 0.680303 6:+49904464 None:intergenic
CATTGCTGATAGCATCAGAA+CGG 0.681897 6:+49902945 None:intergenic
ACTTTCTGCACAATAAACCC+AGG 0.690438 6:+49903372 None:intergenic
GAACCTGCTACCGATCAGGA+AGG 0.704604 6:-49903226 MsG0680032801.01.T01:CDS
AACATGAAGAAAGACAAATG+TGG 0.712043 6:-49902971 MsG0680032801.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATTATTAGTAGATTTAACA+AGG + Chr6:49902994-49903013 None:intergenic 15.0%
!! TGTTATAAACATATAATGAT+AGG - Chr6:49903716-49903735 MsG0680032801.01.T01:intron 15.0%
!! ATGTACAAATTATCAACAAA+GGG + Chr6:49903086-49903105 None:intergenic 20.0%
!! GATATATTATTAGTGTATGA+AGG - Chr6:49903158-49903177 MsG0680032801.01.T01:CDS 20.0%
!! TATATAACAACTCGAAAATT+TGG + Chr6:49903658-49903677 None:intergenic 20.0%
!!! ACTTAAAGAATGATGTTTTA+AGG - Chr6:49904207-49904226 MsG0680032801.01.T01:intron 20.0%
!!! CTATAACTTATTGTTATTCT+TGG - Chr6:49902877-49902896 MsG0680032801.01.T01:intron 20.0%
!!! CTTAAAGAATGATGTTTTAA+GGG - Chr6:49904208-49904227 MsG0680032801.01.T01:intron 20.0%
! AAAAGTTTGAGAACTGAATT+TGG + Chr6:49902838-49902857 None:intergenic 25.0%
! AAACATTTAACAATCCTTAC+TGG + Chr6:49904793-49904812 None:intergenic 25.0%
! ACACAAATGAATTGAAACTA+TGG - Chr6:49904046-49904065 MsG0680032801.01.T01:intron 25.0%
! ACCTAAAAAAAAAAACAGAC+AGG + Chr6:49903320-49903339 None:intergenic 25.0%
! ACTTTGTCTTTAGATTCATA+TGG + Chr6:49904497-49904516 None:intergenic 25.0%
! ATATTAATGGGATGATATTG+TGG - Chr6:49903247-49903266 MsG0680032801.01.T01:CDS 25.0%
! ATCAGAAAATAGAAAAGAGA+AGG + Chr6:49903753-49903772 None:intergenic 25.0%
! ATCATAAGTTAAAAACCTCA+AGG + Chr6:49904586-49904605 None:intergenic 25.0%
! ATTCATATACAAGTGTGTAT+TGG + Chr6:49902748-49902767 None:intergenic 25.0%
! CATGTACAAATTATCAACAA+AGG + Chr6:49903087-49903106 None:intergenic 25.0%
! CTAAACTGAAAATAACAAGA+AGG + Chr6:49903380-49903399 None:intergenic 25.0%
! TAAAATTCACTAATATGCGA+TGG + Chr6:49904313-49904332 None:intergenic 25.0%
! TCAGAAAATAGAAAAGAGAA+GGG + Chr6:49903752-49903771 None:intergenic 25.0%
! TTATCAAAAGCCAAAAAATG+AGG + Chr6:49903627-49903646 None:intergenic 25.0%
!! TTATATACTAGAAGTGCATA+TGG - Chr6:49903043-49903062 MsG0680032801.01.T01:CDS 25.0%
!!! AGTTTTGGTATTTAATCTCA+AGG - Chr6:49904752-49904771 MsG0680032801.01.T01:CDS 25.0%
!!! ATTTATTTCTCTTTTCCTTG+AGG - Chr6:49904568-49904587 MsG0680032801.01.T01:intron 25.0%
!!! TCCTGTCTGTTTTTTTTTTT+AGG - Chr6:49903316-49903335 MsG0680032801.01.T01:intron 25.0%
!!! TTTTTTGGCTTTTGATAACA+AGG - Chr6:49903629-49903648 MsG0680032801.01.T01:intron 25.0%
AAAGCAAAACGAAACAAAAG+AGG + Chr6:49902789-49902808 None:intergenic 30.0%
AACATGAAGAAAGACAAATG+TGG - Chr6:49904419-49904438 MsG0680032801.01.T01:intron 30.0%
AAGAGATCACAATCACAAAT+GGG + Chr6:49904542-49904561 None:intergenic 30.0%
AGAAAATAGAAAAGAGAAGG+GGG + Chr6:49903750-49903769 None:intergenic 30.0%
ATCTGTTATGCATAAATGTG+TGG - Chr6:49903948-49903967 MsG0680032801.01.T01:intron 30.0%
CAAAAAACTCGTCAATGTTT+GGG - Chr6:49904116-49904135 MsG0680032801.01.T01:intron 30.0%
CAGAAAATAGAAAAGAGAAG+GGG + Chr6:49903751-49903770 None:intergenic 30.0%
CTAACTGATAAGGACTATAT+GGG - Chr6:49904072-49904091 MsG0680032801.01.T01:intron 30.0%
CTGAAGATTGAAAAAGGTAA+AGG + Chr6:49904617-49904636 None:intergenic 30.0%
TCAAAAAACTCGTCAATGTT+TGG - Chr6:49904115-49904134 MsG0680032801.01.T01:intron 30.0%
TCCCATTAATATATCAACCA+CGG + Chr6:49903239-49903258 None:intergenic 30.0%
TCCTGACAAAAAAAAATCTC+TGG + Chr6:49903778-49903797 None:intergenic 30.0%
TTGGTATTTAATCTCAAGGT+TGG - Chr6:49904756-49904775 MsG0680032801.01.T01:CDS 30.0%
TTTCTTCATGTTTCTCTCAT+TGG + Chr6:49904411-49904430 None:intergenic 30.0%
! ACCTTGATAATTGCAACATA+CGG + Chr6:49902966-49902985 None:intergenic 30.0%
! AGAAGTACAAACAAAAGCTA+CGG - Chr6:49904728-49904747 MsG0680032801.01.T01:CDS 30.0%
! TTATTTTCAGTTTAGCAGTC+CGG - Chr6:49903385-49903404 MsG0680032801.01.T01:CDS 30.0%
! TTTTATGTCTCTTCCTTTTC+CGG + Chr6:49902693-49902712 None:intergenic 30.0%
!! GAAGGCATTAACAAAAGTTT+AGG - Chr6:49904467-49904486 MsG0680032801.01.T01:CDS 30.0%
!!! AAAGAATGATGTTTTAAGGG+AGG - Chr6:49904211-49904230 MsG0680032801.01.T01:intron 30.0%
!!! AGTTTTTTGAACGTTTCTTG+TGG + Chr6:49904105-49904124 None:intergenic 30.0%
!!! ATGTTTTTTAGCGTTGTCTT+TGG - Chr6:49904807-49904826 MsG0680032801.01.T01:CDS 30.0%
!!! TCCAGAGATTTTTTTTTGTC+AGG - Chr6:49903774-49903793 MsG0680032801.01.T01:intron 30.0%
ACAGGGAAGCTAATCTAAAA+AGG + Chr6:49903548-49903567 None:intergenic 35.0%
ACTATGGAAGCTAACTGATA+AGG - Chr6:49904062-49904081 MsG0680032801.01.T01:intron 35.0%
ATCTAAAGACAAAGTTCCGA+AGG - Chr6:49904502-49904521 MsG0680032801.01.T01:intron 35.0%
ATCTGGAAGTTGTTTGTGTA+TGG + Chr6:49903986-49904005 None:intergenic 35.0%
ATGATATTGTGGATGAGATC+AGG - Chr6:49903258-49903277 MsG0680032801.01.T01:CDS 35.0%
CAAGAGATCACAATCACAAA+TGG + Chr6:49904543-49904562 None:intergenic 35.0%
CCAGATGAAGCAGAAAAAAA+GGG - Chr6:49903853-49903872 MsG0680032801.01.T01:intron 35.0%
CCCATTAATATATCAACCAC+GGG + Chr6:49903238-49903257 None:intergenic 35.0%
GAATATGCACGTGTTGTATT+TGG - Chr6:49903588-49903607 MsG0680032801.01.T01:CDS 35.0%
GCTAACTGATAAGGACTATA+TGG - Chr6:49904071-49904090 MsG0680032801.01.T01:intron 35.0%
TCCAGATGAAGCAGAAAAAA+AGG - Chr6:49903852-49903871 MsG0680032801.01.T01:intron 35.0%
TCTGGAAGTTGTTTGTGTAT+GGG + Chr6:49903985-49904004 None:intergenic 35.0%
TTATGCATAACAGATTCTGC+AGG + Chr6:49903943-49903962 None:intergenic 35.0%
TTCGCATGTTGTCACTATTT+GGG - Chr6:49902808-49902827 MsG0680032801.01.T01:intron 35.0%
TTTCGCATGTTGTCACTATT+TGG - Chr6:49902807-49902826 MsG0680032801.01.T01:intron 35.0%
! CCCGTGGTTGATATATTAAT+GGG - Chr6:49903235-49903254 MsG0680032801.01.T01:CDS 35.0%
! GATCATCAAGCTTCCATTTT+GGG + Chr6:49903812-49903831 None:intergenic 35.0%
! GGCTTTTGATATTTAACCTC+AGG + Chr6:49902945-49902964 None:intergenic 35.0%
! TGATCATCAAGCTTCCATTT+TGG + Chr6:49903813-49903832 None:intergenic 35.0%
!! GATTTTCAATAATTTGCCCG+TGG - Chr6:49903219-49903238 MsG0680032801.01.T01:CDS 35.0%
!! GGAGTTCTGAAGATTGAAAA+AGG + Chr6:49904623-49904642 None:intergenic 35.0%
!! TTCTCTAGAGCAACAATAAC+CGG + Chr6:49904676-49904695 None:intergenic 35.0%
!!! GTGAATTTTAAAGCGCTAAC+AGG - Chr6:49904323-49904342 MsG0680032801.01.T01:intron 35.0%
!!! TGGATGTTACTTTTCCAGTA+AGG - Chr6:49904776-49904795 MsG0680032801.01.T01:CDS 35.0%
ACACAGCAGCAAACAAATAG+AGG + Chr6:49903352-49903371 None:intergenic 40.0%
ACACCGAAAGCCAAAATAAC+CGG + Chr6:49903407-49903426 None:intergenic 40.0%
ACGTGTTGTATTTGGCATGT+CGG - Chr6:49903596-49903615 MsG0680032801.01.T01:CDS 40.0%
ACTTTCTGCACAATAAACCC+AGG + Chr6:49904021-49904040 None:intergenic 40.0%
AGGAAGGTCTGATTAAGGAT+AGG - Chr6:49904180-49904199 MsG0680032801.01.T01:intron 40.0%
ATACAACACGTGCATATTCC+AGG + Chr6:49903587-49903606 None:intergenic 40.0%
ATTCTGCAGGAACTTCATCT+TGG + Chr6:49903930-49903949 None:intergenic 40.0%
CACAACAACAAAAAGACCCA+AGG + Chr6:49903430-49903449 None:intergenic 40.0%
CATTGCTGATAGCATCAGAA+CGG + Chr6:49904448-49904467 None:intergenic 40.0%
CTTAATCAGACCTTCCTGAT+CGG + Chr6:49904177-49904196 None:intergenic 40.0%
GACATCACACTATCCCAAAA+TGG - Chr6:49903796-49903815 MsG0680032801.01.T01:intron 40.0%
GATGAAGCAGAAAAAAAGGG+AGG - Chr6:49903856-49903875 MsG0680032801.01.T01:intron 40.0%
GCAAAACGAAACAAAAGAGG+AGG + Chr6:49902786-49902805 None:intergenic 40.0%
GCACAATTCCCTAGTGTTAT+TGG + Chr6:49904272-49904291 None:intergenic 40.0%
GCCGTATGTTGCAATTATCA+AGG - Chr6:49902962-49902981 MsG0680032801.01.T01:CDS 40.0%
GGATTGCCAATAACAAGACA+GGG + Chr6:49903565-49903584 None:intergenic 40.0%
GTTGAAGAAGCTAAACCCAT+TGG - Chr6:49902650-49902669 MsG0680032801.01.T01:CDS 40.0%
TAATATGCGATGGTGCTCAA+AGG + Chr6:49904303-49904322 None:intergenic 40.0%
TACAACACGTGCATATTCCA+GGG + Chr6:49903586-49903605 None:intergenic 40.0%
TCGAAATAGTCTCCATTCTC+TGG - Chr6:49904244-49904263 MsG0680032801.01.T01:intron 40.0%
TCTGATGCTATCAGCAATGA+AGG - Chr6:49904449-49904468 MsG0680032801.01.T01:CDS 40.0%
TGTGATTGTGATCTCTTGTG+TGG - Chr6:49904545-49904564 MsG0680032801.01.T01:intron 40.0%
TTCTTCGTCTTCTTCTTCAC+TGG + Chr6:49902624-49902643 None:intergenic 40.0%
! AACAAAAGCTACGGCAGTTT+TGG - Chr6:49904737-49904756 MsG0680032801.01.T01:CDS 40.0%
! AGAACTCCAAGTCTTTTGTC+TGG - Chr6:49904635-49904654 MsG0680032801.01.T01:intron 40.0%
! ATGGAAGCTTGATGATCACA+TGG - Chr6:49903815-49903834 MsG0680032801.01.T01:intron 40.0%
! GCCCGTGGTTGATATATTAA+TGG - Chr6:49903234-49903253 MsG0680032801.01.T01:CDS 40.0%
! GTTTAGCAGTCCGGTTATTT+TGG - Chr6:49903394-49903413 MsG0680032801.01.T01:CDS 40.0%
! TAGCTTCCCTGTCTTGTTAT+TGG - Chr6:49903556-49903575 MsG0680032801.01.T01:CDS 40.0%
!! AGTGTATGAAGGTGTTGTCA+TGG - Chr6:49903169-49903188 MsG0680032801.01.T01:CDS 40.0%
!! CTCTGGAACCAATAACACTA+GGG - Chr6:49904261-49904280 MsG0680032801.01.T01:intron 40.0%
!! GGTACTTCAAGAAGTACCTT+CGG + Chr6:49904521-49904540 None:intergenic 40.0%
!! GTGTTATTGGTTCCAGAGAA+TGG + Chr6:49904259-49904278 None:intergenic 40.0%
!! TCTCTAGAGCAACAATAACC+GGG + Chr6:49904675-49904694 None:intergenic 40.0%
!! TCTCTGGAACCAATAACACT+AGG - Chr6:49904260-49904279 MsG0680032801.01.T01:intron 40.0%
!!! AGTCCGGTTATTTTGGCTTT+CGG - Chr6:49903401-49903420 MsG0680032801.01.T01:CDS 40.0%
!!! CCCTTTTTTTCTGCTTCATC+TGG + Chr6:49903856-49903875 None:intergenic 40.0%
AAAAAAAGGGAGGTGGTAGC+TGG - Chr6:49903866-49903885 MsG0680032801.01.T01:intron 45.0%
AACCCATTGGTGAACCTGTT+AGG - Chr6:49902663-49902682 MsG0680032801.01.T01:CDS 45.0%
AACCCTAACAGGTTCACCAA+TGG + Chr6:49902669-49902688 None:intergenic 45.0%
ACCCATTGGTGAACCTGTTA+GGG - Chr6:49902664-49902683 MsG0680032801.01.T01:CDS 45.0%
ACCCTAACAGGTTCACCAAT+GGG + Chr6:49902668-49902687 None:intergenic 45.0%
ATCTGGCCAGACAAAAGACT+TGG + Chr6:49904644-49904663 None:intergenic 45.0%
CAGATCGTAAGCAACATCCT+GGG - Chr6:49904001-49904020 MsG0680032801.01.T01:intron 45.0%
CGATCAGGAAGGTCTGATTA+AGG - Chr6:49904175-49904194 MsG0680032801.01.T01:intron 45.0%
CGTGTTGTATTTGGCATGTC+GGG - Chr6:49903597-49903616 MsG0680032801.01.T01:CDS 45.0%
GAAGCAGAAAAAAAGGGAGG+TGG - Chr6:49903859-49903878 MsG0680032801.01.T01:intron 45.0%
GGGATTGCCAATAACAAGAC+AGG + Chr6:49903566-49903585 None:intergenic 45.0%
GTGTTACCTACTCTTTCTGC+AGG - Chr6:49902899-49902918 MsG0680032801.01.T01:CDS 45.0%
TTACCTACTCTTTCTGCAGG+AGG - Chr6:49902902-49902921 MsG0680032801.01.T01:CDS 45.0%
TTTCAGTCCTTCGATCTCCT+TGG - Chr6:49902719-49902738 MsG0680032801.01.T01:CDS 45.0%
! CAAGTGTGTATTGGTCTCCA+AGG + Chr6:49902739-49902758 None:intergenic 45.0%
!! GTCTTGTTATTGGCAATCCC+TGG - Chr6:49903566-49903585 MsG0680032801.01.T01:CDS 45.0%
!!! ATTTTGGCTTTCGGTGTCCT+TGG - Chr6:49903410-49903429 MsG0680032801.01.T01:CDS 45.0%
!!! GTCGGGTTGTCCTCATTTTT+TGG - Chr6:49903614-49903633 MsG0680032801.01.T01:intron 45.0%
!!! TTTTGGCTTTCGGTGTCCTT+GGG - Chr6:49903411-49903430 MsG0680032801.01.T01:CDS 45.0%
!! TATATAATTTATTATGAAAA+AGG + Chr6:49903030-49903049 None:intergenic 5.0%
AGGAGATACCCATCGTGACA+AGG - Chr6:49904343-49904362 MsG0680032801.01.T01:intron 50.0%
ATAACCGGGACAGCAACATC+TGG + Chr6:49904661-49904680 None:intergenic 50.0%
CCAGATCGTAAGCAACATCC+TGG - Chr6:49904000-49904019 MsG0680032801.01.T01:intron 50.0%
CCTGTTAGGGTTTCCGGAAA+AGG - Chr6:49902677-49902696 MsG0680032801.01.T01:CDS 50.0%
CGACAAACCCTTGTCACGAT+GGG + Chr6:49904354-49904373 None:intergenic 50.0%
CTGATCGGTAGCAGGTTCAT+CGG + Chr6:49904162-49904181 None:intergenic 50.0%
CTGCAGGAACTTCATCTTGG+TGG + Chr6:49903927-49903946 None:intergenic 50.0%
GGAGATACCCATCGTGACAA+GGG - Chr6:49904344-49904363 MsG0680032801.01.T01:intron 50.0%
GGTGAACCTGTTAGGGTTTC+CGG - Chr6:49902671-49902690 MsG0680032801.01.T01:CDS 50.0%
GGTTCATCGGTCTCGATATC+AGG + Chr6:49904149-49904168 None:intergenic 50.0%
GTGGATGAGATCAGGCAGAT+GGG - Chr6:49903266-49903285 MsG0680032801.01.T01:CDS 50.0%
TCGACAAACCCTTGTCACGA+TGG + Chr6:49904355-49904374 None:intergenic 50.0%
TGTGGATGAGATCAGGCAGA+TGG - Chr6:49903265-49903284 MsG0680032801.01.T01:CDS 50.0%
TTGGTCTCCAAGGAGATCGA+AGG + Chr6:49902729-49902748 None:intergenic 50.0%
! ACCTCAGGCAAAAGAAGCAC+AGG + Chr6:49902930-49902949 None:intergenic 50.0%
! CCAGGATGTTGCTTACGATC+TGG + Chr6:49904003-49904022 None:intergenic 50.0%
! CCTCAGGCAAAAGAAGCACA+GGG + Chr6:49902929-49902948 None:intergenic 50.0%
! CCTTTTCCGGAAACCCTAAC+AGG + Chr6:49902680-49902699 None:intergenic 50.0%
! GCTTGATGATCACATGGCAG+TGG - Chr6:49903821-49903840 MsG0680032801.01.T01:intron 50.0%
AAGTGATGAGGCGGAGAAGG+AGG - Chr6:49902583-49902602 MsG0680032801.01.T01:CDS 55.0%
AGACCTTCCTGATCGGTAGC+AGG + Chr6:49904170-49904189 None:intergenic 55.0%
CGATGAACCTGCTACCGATC+AGG - Chr6:49904160-49904179 MsG0680032801.01.T01:intron 55.0%
GAACCTGCTACCGATCAGGA+AGG - Chr6:49904164-49904183 MsG0680032801.01.T01:intron 55.0%
GGCGGAGAAGGAGGAAGATA+AGG - Chr6:49902592-49902611 MsG0680032801.01.T01:CDS 55.0%
GGTCCTCCTGCAGAAAGAGT+AGG + Chr6:49902908-49902927 None:intergenic 55.0%
GTCAAGTGATGAGGCGGAGA+AGG - Chr6:49902580-49902599 MsG0680032801.01.T01:CDS 55.0%
! CCCTGTGCTTCTTTTGCCTG+AGG - Chr6:49902926-49902945 MsG0680032801.01.T01:CDS 55.0%
AGATGGGCAACGTGCAGCTG+CGG - Chr6:49903282-49903301 MsG0680032801.01.T01:CDS 60.0%
CTGGCCAGATGTTGCTGTCC+CGG - Chr6:49904654-49904673 MsG0680032801.01.T01:intron 60.0%
TGGGCAACGTGCAGCTGCGG+AGG - Chr6:49903285-49903304 MsG0680032801.01.T01:intron 70.0%
Chromosome Type Strat End Strand Name
Chr6 gene 49902575 49904837 49902575 ID=MsG0680032801.01;Name=MsG0680032801.01
Chr6 mRNA 49902575 49904837 49902575 ID=MsG0680032801.01.T01;Parent=MsG0680032801.01;Name=MsG0680032801.01.T01;_AED=0.35;_eAED=0.36;_QI=0|0.25|0|1|1|1|5|0|344
Chr6 exon 49904727 49904837 49904727 ID=MsG0680032801.01.T01:exon:10674;Parent=MsG0680032801.01.T01
Chr6 exon 49904429 49904491 49904429 ID=MsG0680032801.01.T01:exon:10675;Parent=MsG0680032801.01.T01
Chr6 exon 49903372 49903616 49903372 ID=MsG0680032801.01.T01:exon:10676;Parent=MsG0680032801.01.T01
Chr6 exon 49902889 49903303 49902889 ID=MsG0680032801.01.T01:exon:10677;Parent=MsG0680032801.01.T01
Chr6 exon 49902575 49902775 49902575 ID=MsG0680032801.01.T01:exon:10678;Parent=MsG0680032801.01.T01
Chr6 CDS 49904727 49904837 49904727 ID=MsG0680032801.01.T01:cds;Parent=MsG0680032801.01.T01
Chr6 CDS 49904429 49904491 49904429 ID=MsG0680032801.01.T01:cds;Parent=MsG0680032801.01.T01
Chr6 CDS 49903372 49903616 49903372 ID=MsG0680032801.01.T01:cds;Parent=MsG0680032801.01.T01
Chr6 CDS 49902889 49903303 49902889 ID=MsG0680032801.01.T01:cds;Parent=MsG0680032801.01.T01
Chr6 CDS 49902575 49902775 49902575 ID=MsG0680032801.01.T01:cds;Parent=MsG0680032801.01.T01
Gene Sequence

>MsG0680032801.01.T01

ATGAAGTCAAGTGATGAGGCGGAGAAGGAGGAAGATAAGGAACTGTCCAGTGAAGAAGAAGACGAAGAATTGCAAGTTGAAGAAGCTAAACCCATTGGTGAACCTGTTAGGGAGGACCCTGTGCTTCTTTTGCCTGAGGTTAAATATCAAAAGCCGTATGTTGCAATTATCAAGGACATCACACTATCCCAAAATGGAAGCTTGATGATCACATGGCAGTGGTTTTATCGTCCAGATGAAGCAGAAAAAAAGGGAGGTGGTAGCTGGAAATCGATTGACAACAGAGAGTTGTTTTATAGTTTCCACCAAGATGAAGTTCCTGCAGAATCTGTTATGCATAAATGTGTGGTGCATTTTGTTCCCATACACAAACAACTTCCAGATCGTAAGCAACATCCTGGGTTTATTGTGCAGAAAGTAAACGTTCAAAAAACTCGTCAATGTTTGGGTGAACTACCTGATATCGAGACCGATGAACCTGCTACCGATCAGGAAGGTCTGATTAAGGATAGGAGAAACTTAAAGAATGATGTTTTAAGGGAGGATGAAACATCTCGAAATAGTCTCCATTCTCTGGAACCAATAACACTAGGGAATTGTGCAACTAATTCCTTTGAGCACCATCGCATATTAGTGAATTTTAAAGCGCTAACAGGAGATACCCATCGTGACAAGGGTTTGTCGATGTTGCTTCAAAATGTTCAATACTTGTTTGATACCAATGAGAGAAACATGAAGAAAGACAAATGTGGTGACCGTTCTGATGCTATCAGCAATGAAGGCATTAACAAAAGTTTAGGAATACCATATGAATCTAAAGACAAAGTTCCGAAGAACTCCAAGTCTTTTGTCTGGCCAGATGTTGCTGTCCCGGTTATTGTTGCTCTAGAGAAAGCTACATACGATACATTTTCATCAGATTATCAGAAGTACAAACAAAAGCTACGGCAGTTTTGGTATTTAATCTCAAGGTTGGATGTTACTTTTCCAGTAAGGATTGTTAAATGTTTTTTAGCGTTGTCTTTGGCACTTTAG

Protein sequence

>MsG0680032801.01.T01

MKSSDEAEKEEDKELSSEEEDEELQVEEAKPIGEPVREDPVLLLPEVKYQKPYVAIIKDITLSQNGSLMITWQWFYRPDEAEKKGGGSWKSIDNRELFYSFHQDEVPAESVMHKCVVHFVPIHKQLPDRKQHPGFIVQKVNVQKTRQCLGELPDIETDEPATDQEGLIKDRRNLKNDVLREDETSRNSLHSLEPITLGNCATNSFEHHRILVNFKALTGDTHRDKGLSMLLQNVQYLFDTNERNMKKDKCGDRSDAISNEGINKSLGIPYESKDKVPKNSKSFVWPDVAVPVIVALEKATYDTFSSDYQKYKQKLRQFWYLISRLDVTFPVRIVKCFLALSLAL*