AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0680033083.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0680033083.01.T01 MTR_8g005940 79.670 182 29 1 12 193 53 226 1.72e-100 297
MsG0680033083.01.T01 MTR_8g446640 59.551 267 53 4 12 231 34 292 7.91e-95 283
MsG0680033083.01.T01 MTR_7g024060 61.943 247 50 4 12 223 53 290 9.05e-95 284
MsG0680033083.01.T01 MTR_6g087820 61.943 247 50 4 12 223 53 290 9.05e-95 284
MsG0680033083.01.T01 MTR_5g081190 61.943 247 50 4 12 223 53 290 9.05e-95 284
MsG0680033083.01.T01 MTR_5g091480 61.943 247 50 4 12 223 53 290 9.05e-95 284
MsG0680033083.01.T01 MTR_5g056290 61.943 247 50 4 12 223 53 290 9.05e-95 284
MsG0680033083.01.T01 MTR_3g031190 61.943 247 50 4 12 223 53 290 9.05e-95 284
MsG0680033083.01.T01 MTR_2g005490 61.943 247 50 4 12 223 53 290 9.05e-95 284
MsG0680033083.01.T01 MTR_2g010570 61.943 247 50 4 12 223 53 290 9.05e-95 284
MsG0680033083.01.T01 MTR_1g023370 75.393 191 14 1 12 169 53 243 9.83e-95 283
MsG0680033083.01.T01 MTR_5g030110 61.538 247 51 4 12 223 53 290 4.48e-94 282
MsG0680033083.01.T01 MTR_2g007410 61.538 247 51 4 12 223 53 290 4.48e-94 282
MsG0680033083.01.T01 MTR_5g045850 78.333 180 13 1 13 166 39 218 4.87e-94 281
MsG0680033083.01.T01 MTR_7g451880 61.538 247 51 4 12 223 54 291 1.13e-93 281
MsG0680033083.01.T01 MTR_4g058660 61.134 247 52 4 12 223 53 290 3.50e-92 277
MsG0680033083.01.T01 MTR_3g015660 74.332 187 15 1 14 167 55 241 1.36e-91 273
MsG0680033083.01.T01 MTR_7g074180 74.468 188 15 1 12 166 53 240 1.85e-91 275
MsG0680033083.01.T01 MTR_2g010270 69.268 205 21 2 12 174 34 238 9.30e-91 273
MsG0680033083.01.T01 MTR_1g105785 38.144 388 158 3 12 319 53 438 1.45e-90 281
MsG0680033083.01.T01 MTR_7g110100 37.662 385 160 3 12 316 53 437 9.63e-86 267
MsG0680033083.01.T01 MTR_1g011490 55.762 269 55 5 12 233 53 304 1.39e-83 255
MsG0680033083.01.T01 MTR_1g082860 69.613 181 13 2 12 159 53 224 7.50e-78 239
MsG0680033083.01.T01 MTR_5g071020 73.077 156 12 1 12 167 38 163 1.71e-73 226
MsG0680033083.01.T01 MTR_7g051400 34.501 371 173 4 12 319 53 416 1.44e-70 228
MsG0680033083.01.T01 MTR_5g012180 60.638 188 15 2 12 170 38 195 4.23e-67 211
MsG0680033083.01.T01 MTR_0105s0080 62.162 185 12 2 12 163 34 193 6.77e-66 207
MsG0680033083.01.T01 MTR_1g110330 65.190 158 13 1 12 169 31 146 3.74e-62 196
MsG0680033083.01.T01 MTR_3g036220 68.217 129 11 1 12 140 38 136 9.27e-53 174
MsG0680033083.01.T01 MTR_7g045450 51.744 172 65 1 12 165 53 224 9.69e-52 171
MsG0680033083.01.T01 MTR_6g073570 51.744 172 65 1 12 165 53 224 9.69e-52 171
MsG0680033083.01.T01 MTR_0048s0080 38.577 267 71 6 98 284 5 258 3.47e-49 167
MsG0680033083.01.T01 MTR_5g019960 44.920 187 70 2 12 165 59 245 1.53e-48 163
MsG0680033083.01.T01 MTR_3g452170 33.449 287 111 3 12 218 53 339 2.74e-46 162
MsG0680033083.01.T01 MTR_4g032565 48.299 147 76 0 170 316 35 181 6.73e-45 154
MsG0680033083.01.T01 MTR_4g032585 43.931 173 97 0 144 316 9 181 3.69e-44 152
MsG0680033083.01.T01 MTR_2g435900 69.027 113 5 1 28 140 1 83 5.59e-44 147
MsG0680033083.01.T01 MTR_3g449160 66.372 113 8 1 28 140 1 83 1.04e-42 143
MsG0680033083.01.T01 MTR_4g060433 53.175 126 59 0 137 262 2 127 2.21e-39 138
MsG0680033083.01.T01 MTR_8g104590 64.583 96 31 1 158 253 12 104 7.10e-38 133
MsG0680033083.01.T01 MTR_7g039300 46.835 158 60 1 8 165 80 213 2.16e-36 131
MsG0680033083.01.T01 MTR_1g115520 48.322 149 43 2 168 316 7 121 4.09e-36 127
MsG0680033083.01.T01 MTR_3g007260 45.255 137 50 1 4 140 30 141 5.51e-34 123
MsG0680033083.01.T01 MTR_1g052715 36.702 188 85 2 13 166 13 200 7.77e-34 127
MsG0680033083.01.T01 MTR_1g492690 32.258 217 100 4 139 319 27 232 3.34e-31 120
MsG0680033083.01.T01 MTR_3g068135 48.031 127 62 2 98 222 6 130 1.50e-29 112
MsG0680033083.01.T01 MTR_6g465570 44.167 120 67 0 12 131 49 168 3.95e-28 107
MsG0680033083.01.T01 MTR_8g465040 44.538 119 66 0 12 130 53 171 2.24e-27 105
MsG0680033083.01.T01 MTR_8g064300 42.991 107 61 0 209 315 115 221 5.28e-26 105
MsG0680033083.01.T01 MTR_1g051235 44.167 120 66 1 12 130 53 172 6.64e-26 101
MsG0680033083.01.T01 MTR_3g046650 27.599 279 111 6 12 279 4 202 6.49e-25 100
MsG0680033083.01.T01 MTR_7g096440 35.659 129 83 0 12 140 6 134 2.50e-24 100
MsG0680033083.01.T01 MTR_2g019040 50.893 112 22 1 111 189 4 115 2.54e-24 99.4
MsG0680033083.01.T01 MTR_7g070110 59.494 79 32 0 12 90 37 115 6.89e-24 95.1
MsG0680033083.01.T01 MTR_5g057125 31.364 220 85 4 140 312 11 211 8.14e-24 99.4
MsG0680033083.01.T01 MTR_7g051840 35.294 119 74 1 12 130 10 125 4.43e-22 90.1
MsG0680033083.01.T01 MTR_5g093790 36.765 136 77 2 180 315 169 295 6.03e-22 95.5
MsG0680033083.01.T01 MTR_3g108500 45.349 86 42 1 216 301 20 100 1.36e-20 89.7
MsG0680033083.01.T01 MTR_6g024030 42.308 104 27 1 99 169 60 163 2.89e-18 82.8
MsG0680033083.01.T01 MTR_2g048560 31.034 145 99 1 169 312 290 434 2.39e-17 82.8
MsG0680033083.01.T01 MTR_1g062890 25.781 256 168 6 12 250 71 321 7.91e-15 74.7
MsG0680033083.01.T01 MTR_4g017450 39.759 83 50 0 12 94 52 134 2.14e-13 67.0
MsG0680033083.01.T01 MTR_3g056270 31.690 142 89 4 170 308 449 585 2.55e-13 70.9
MsG0680033083.01.T01 MTR_3g056270 29.771 131 90 2 12 141 53 182 3.62e-11 64.3
MsG0680033083.01.T01 MTR_4g036240 31.690 142 89 4 170 308 290 426 3.19e-13 70.5
MsG0680033083.01.T01 MTR_6g445520 28.947 152 105 3 158 308 145 294 3.89e-13 70.1
MsG0680033083.01.T01 MTR_5g078250 30.769 143 96 3 170 311 290 430 8.20e-13 69.3
MsG0680033083.01.T01 MTR_6g069460 77.778 36 8 0 12 47 87 122 7.74e-12 62.8
MsG0680033083.01.T01 MTR_2g048550 26.797 153 110 2 167 318 288 439 1.34e-11 65.5
MsG0680033083.01.T01 MTR_4g085760 32.031 128 83 2 13 139 57 181 2.98e-11 64.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0680033083.01.T01 AT1G52950 21.809 376 200 10 12 295 52 425 7.78e-17 81.6
MsG0680033083.01.T01 AT2G05642 23.490 149 104 2 170 308 271 419 1.01e-11 65.9

Find 69 sgRNAs with CRISPR-Local

Find 363 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTGTGTGAATTTACCTTATA+AGG 0.176423 6:+56094453 None:intergenic
CCACTTGCATTGCTCTCTTT+GGG 0.202399 6:-56093983 MsG0680033083.01.T01:CDS
ACCACTTGCATTGCTCTCTT+TGG 0.221388 6:-56093984 MsG0680033083.01.T01:CDS
GGAGTTGCTAATGCCTTTAA+TGG 0.246567 6:-56093762 MsG0680033083.01.T01:CDS
ATCATCAGATGCCTTCTTTA+CGG 0.268383 6:+56092550 None:intergenic
GCACATTACGCCCAATAAAC+TGG 0.284869 6:+56092808 None:intergenic
CGCCAGGTGACCCAGTTTAT+TGG 0.287098 6:-56092819 MsG0680033083.01.T01:CDS
ACTATATATGAGATCGAAAC+TGG 0.309046 6:-56093089 MsG0680033083.01.T01:CDS
TATCAGCTTAGTCCCATTAA+AGG 0.310808 6:+56093749 None:intergenic
GGGACTAAGCTGATACTTAA+TGG 0.325838 6:-56093741 MsG0680033083.01.T01:CDS
TAATTGAAAGAGGTGATATA+AGG 0.328150 6:-56094168 MsG0680033083.01.T01:CDS
CGCCGCAGCTAGAAAAGATT+TGG 0.333860 6:-56094553 MsG0680033083.01.T01:CDS
TACGTAATTTCAGATGTTAT+TGG 0.335367 6:-56094196 MsG0680033083.01.T01:intron
GGTTATTGATCTCACTTTAG+AGG 0.347534 6:-56094116 MsG0680033083.01.T01:CDS
AAGATTTGGTGGCAAGGTTC+AGG 0.355625 6:-56094539 MsG0680033083.01.T01:CDS
GCCAGGTGACCCAGTTTATT+GGG 0.358263 6:-56092818 MsG0680033083.01.T01:CDS
GTCATGTACGCAGCGACTTC+AGG 0.370144 6:+56093711 None:intergenic
TATGTTTATGTATGATTTGA+AGG 0.377439 6:-56092507 MsG0680033083.01.T01:CDS
GAAGAAAGAATTTCATTGAA+TGG 0.394547 6:+56094348 None:intergenic
ATGCACCCAGTGTGCTTCAT+TGG 0.403027 6:-56093045 MsG0680033083.01.T01:CDS
ATGCTTACCGGGAAACTTCC+CGG 0.415902 6:+56098926 None:intergenic
TGACCTACCGGGAAGTTTCC+CGG 0.433832 6:-56098933 MsG0680033083.01.T01:intron
GAGTTGCTAATGCCTTTAAT+GGG 0.439194 6:-56093761 MsG0680033083.01.T01:CDS
GGTGGCAAGGTTCAGGTCCA+TGG 0.442231 6:-56094532 MsG0680033083.01.T01:CDS
AGATCGAAACTGGGGTTGAT+TGG 0.454298 6:-56093079 MsG0680033083.01.T01:CDS
CACTTGCATTGCTCTCTTTG+GGG 0.462664 6:-56093982 MsG0680033083.01.T01:intron
TACTAGGATGGGTGACCTAC+CGG 0.465420 6:-56098945 None:intergenic
TTCAGGTCCATGGTTGAAGA+AGG 0.473259 6:-56094522 MsG0680033083.01.T01:CDS
AACTGTCGAGAAAGTGTCTA+CGG 0.480466 6:-56094325 MsG0680033083.01.T01:CDS
AATTGAAAGAGGTGATATAA+GGG 0.489125 6:-56094167 MsG0680033083.01.T01:CDS
AAAAGGATGGAAGGAAAAGC+AGG 0.493666 6:-56094138 MsG0680033083.01.T01:CDS
GCCCAATAAACTGGGTCACC+TGG 0.499906 6:+56092817 None:intergenic
TCAAAATTATGCCGTAAAGA+AGG 0.503745 6:-56092561 MsG0680033083.01.T01:CDS
GATAGCAGGCGAGTGTACTT+TGG 0.506539 6:+56094395 None:intergenic
ATCAGCACATTAAAATCAGC+AGG 0.507382 6:+56092641 None:intergenic
CACATTACGCCCAATAAACT+GGG 0.508234 6:+56092809 None:intergenic
TTCAAGGTTGAGGTTGGTGA+AGG 0.523411 6:-56092602 MsG0680033083.01.T01:CDS
TGATATAAGGGAAACTGAAA+AGG 0.524272 6:-56094155 MsG0680033083.01.T01:CDS
CGCAGCTAGAAAAGATTTGG+TGG 0.528205 6:-56094550 MsG0680033083.01.T01:CDS
ATAAGGGAAACTGAAAAGGA+TGG 0.532230 6:-56094151 MsG0680033083.01.T01:CDS
AGTTTCGATCTCATATATAG+TGG 0.533358 6:+56093091 None:intergenic
ATTGGTCATGTAATTGAAAG+AGG 0.535259 6:-56094178 MsG0680033083.01.T01:CDS
GAAGTCGCTGCGTACATGAC+AGG 0.535366 6:-56093708 MsG0680033083.01.T01:intron
AAAACGTTCATAGGGATAGC+AGG 0.542724 6:+56094381 None:intergenic
CAGGTCCATGGTTGAAGAAG+GGG 0.549020 6:-56094520 MsG0680033083.01.T01:CDS
TCAGGTCCATGGTTGAAGAA+GGG 0.552024 6:-56094521 MsG0680033083.01.T01:CDS
CTATATATGAGATCGAAACT+GGG 0.554941 6:-56093088 MsG0680033083.01.T01:CDS
CGCAAGTGTAAAACATGCAA+GGG 0.557114 6:-56092993 MsG0680033083.01.T01:CDS
ACGGAGCACTCCATTGTCAA+TGG 0.570174 6:+56093019 None:intergenic
TCATTGGCCACCATTGACAA+TGG 0.573704 6:-56093029 MsG0680033083.01.T01:CDS
TCGCAAGTGTAAAACATGCA+AGG 0.581007 6:-56092994 MsG0680033083.01.T01:CDS
GGGAAACTGAAAAGGATGGA+AGG 0.581802 6:-56094147 MsG0680033083.01.T01:CDS
ACTAGGATGGGTGACCTACC+GGG 0.587138 6:-56098944 None:intergenic
CATGCAAGGGTGCAGTCCCA+AGG 0.605354 6:-56092980 MsG0680033083.01.T01:intron
CTAGAAAAGATTTGGTGGCA+AGG 0.606708 6:-56094545 MsG0680033083.01.T01:CDS
GTCATCGTGATGGACGACAC+AGG 0.607107 6:-56092867 MsG0680033083.01.T01:CDS
CTTGATCAATGAACGTGATG+AGG 0.616661 6:-56092781 MsG0680033083.01.T01:intron
TAAGCTGCATGTCATCGTGA+TGG 0.618873 6:-56092877 MsG0680033083.01.T01:CDS
CCCAAAGAGAGCAATGCAAG+TGG 0.621311 6:+56093983 None:intergenic
TCATCGTGATGGACGACACA+GGG 0.632753 6:-56092866 MsG0680033083.01.T01:CDS
ACTGTCGAGAAAGTGTCTAC+GGG 0.633200 6:-56094324 MsG0680033083.01.T01:intron
GGTGGCCAATGAAGCACACT+GGG 0.638388 6:+56093040 None:intergenic
TGGTGGCCAATGAAGCACAC+TGG 0.649161 6:+56093039 None:intergenic
AAGAAGGCATCTGATGATGT+TGG 0.653044 6:-56092545 MsG0680033083.01.T01:CDS
TTACCGGGAAACTTCCCGGT+AGG 0.653286 6:+56098930 None:intergenic
AGGTCCATGGTTGAAGAAGG+GGG 0.671399 6:-56094519 MsG0680033083.01.T01:CDS
GAGCACTCCATTGTCAATGG+TGG 0.672337 6:+56093022 None:intergenic
AAAGGATGGAAGGAAAAGCA+GGG 0.682942 6:-56094137 MsG0680033083.01.T01:CDS
TATATATGAGATCGAAACTG+GGG 0.703261 6:-56093087 MsG0680033083.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AATATAATTTTAAATTAAAT+TGG + Chr6:56093039-56093058 None:intergenic 0.0%
!! AATATAATACCAAAATAAAA+AGG + Chr6:56092691-56092710 None:intergenic 10.0%
!! ATAAATATGAAATATTTGTA+GGG + Chr6:56095909-56095928 None:intergenic 10.0%
!! ATAACATATAAAAATGTAAA+TGG + Chr6:56097753-56097772 None:intergenic 10.0%
!! ATATAATACCAAAATAAAAA+GGG + Chr6:56092690-56092709 None:intergenic 10.0%
!! TAAATATGAAATAGTTATTT+CGG + Chr6:56096060-56096079 None:intergenic 10.0%
!! TAAATTCATTATATACAAAT+AGG - Chr6:56094386-56094405 MsG0680033083.01.T01:CDS 10.0%
!!! AATTAACAAAATATTTTCTA+TGG - Chr6:56092748-56092767 MsG0680033083.01.T01:intron 10.0%
!!! AATTTTATCATATTATTTGA+AGG - Chr6:56093632-56093651 MsG0680033083.01.T01:intron 10.0%
!!! TTTTATATGTTATAGAATAA+AGG - Chr6:56097760-56097779 MsG0680033083.01.T01:intron 10.0%
!! AAAAAAAGCGAAAAAAATAT+GGG - Chr6:56092848-56092867 MsG0680033083.01.T01:CDS 15.0%
!! AAATGCTATTAAAATTAAGT+AGG - Chr6:56092615-56092634 MsG0680033083.01.T01:CDS 15.0%
!! AATGCTATTAAAATTAAGTA+GGG - Chr6:56092616-56092635 MsG0680033083.01.T01:CDS 15.0%
!! AATTAAATTGGAACTATTAA+AGG + Chr6:56093027-56093046 None:intergenic 15.0%
!! AATTACTTATTTAGACTTAA+AGG + Chr6:56093395-56093414 None:intergenic 15.0%
!! AATTTATTGTATGGTTAAAT+TGG + Chr6:56093990-56094009 None:intergenic 15.0%
!! ATTGTCCAATTATTATTAAT+AGG - Chr6:56097983-56098002 MsG0680033083.01.T01:intron 15.0%
!! CAAAATAATGAAACAAAATT+AGG + Chr6:56096433-56096452 None:intergenic 15.0%
!! GATAAATATGAAATATTTGT+AGG + Chr6:56095910-56095929 None:intergenic 15.0%
!! TAAAAAATATGATGCAAAAT+TGG - Chr6:56094671-56094690 MsG0680033083.01.T01:intron 15.0%
!! TAAATATGAAATAGTTGTTT+CGG + Chr6:56095597-56095616 None:intergenic 15.0%
!! TAAATATGAAATATGATCAA+TGG + Chr6:56095791-56095810 None:intergenic 15.0%
!! TATATAATTGTATAAATGTG+TGG - Chr6:56098684-56098703 MsG0680033083.01.T01:intron 15.0%
!! TATGATGTATTTATAGAAAA+AGG + Chr6:56096520-56096539 None:intergenic 15.0%
!! TGTAACCTATTAATAATAAT+TGG + Chr6:56097991-56098010 None:intergenic 15.0%
!! TGTACTATCAAAAAAAATTA+AGG - Chr6:56095400-56095419 MsG0680033083.01.T01:intron 15.0%
!! TTGATTTAAATCATCTTATT+TGG + Chr6:56095161-56095180 None:intergenic 15.0%
!!! AAATTAGATTTTTTTAGAGA+AGG + Chr6:56093150-56093169 None:intergenic 15.0%
!!! AAATTTTCTATAGAATTTGA+AGG - Chr6:56094078-56094097 MsG0680033083.01.T01:intron 15.0%
!!! ATAATTAACCCTTTTTATTT+TGG - Chr6:56092679-56092698 MsG0680033083.01.T01:intron 15.0%
!!! CATTTTTCATTCTAATAAAA+GGG + Chr6:56098080-56098099 None:intergenic 15.0%
!!! CTTATTAATTATTTTGATTG+TGG - Chr6:56093875-56093894 MsG0680033083.01.T01:intron 15.0%
!!! GAAATTTTTAGATGTATTTT+TGG - Chr6:56098236-56098255 MsG0680033083.01.T01:intron 15.0%
!!! GTCATTAAATGTTTTAATTT+GGG + Chr6:56095356-56095375 None:intergenic 15.0%
!!! TAATTTGTGAATTCTTAAAA+AGG + Chr6:56095214-56095233 None:intergenic 15.0%
!!! TATTTTCATGAATTTCAATA+TGG + Chr6:56094173-56094192 None:intergenic 15.0%
!!! TGTCATTAAATGTTTTAATT+TGG + Chr6:56095357-56095376 None:intergenic 15.0%
!!! TGTTGAATTTTTGAAAAATT+AGG - Chr6:56097639-56097658 MsG0680033083.01.T01:intron 15.0%
!!! TTTTATAACCATCTTTAATT+TGG + Chr6:56094017-56094036 None:intergenic 15.0%
!! AAAAAAGTTTAAAGAGAAGT+TGG + Chr6:56093290-56093309 None:intergenic 20.0%
!! AAATATTTACAGATTTGTCA+AGG - Chr6:56098306-56098325 MsG0680033083.01.T01:intron 20.0%
!! AACTACAATATCAATATAGT+AGG + Chr6:56097527-56097546 None:intergenic 20.0%
!! AATTACTTCCAAATTAAAGA+TGG - Chr6:56094006-56094025 MsG0680033083.01.T01:intron 20.0%
!! ACAAATTCAATCAATGATTT+GGG - Chr6:56093566-56093585 MsG0680033083.01.T01:intron 20.0%
!! AGTATGTCAATATTAATTTC+AGG - Chr6:56096367-56096386 MsG0680033083.01.T01:intron 20.0%
!! CAAAAAAAGCGAAAAAAATA+TGG - Chr6:56092847-56092866 MsG0680033083.01.T01:CDS 20.0%
!! CATGAAAATAAAAAAAGTCT+TGG - Chr6:56094183-56094202 MsG0680033083.01.T01:CDS 20.0%
!! GATATAGTTGATTATTTGAT+AGG - Chr6:56098529-56098548 MsG0680033083.01.T01:intron 20.0%
!! GCAAATATTTATAATAGAGA+TGG - Chr6:56095422-56095441 MsG0680033083.01.T01:intron 20.0%
!! TACAAATTCAATCAATGATT+TGG - Chr6:56093565-56093584 MsG0680033083.01.T01:intron 20.0%
!! TATGTTTATGTATGATTTGA+AGG - Chr6:56098924-56098943 MsG0680033083.01.T01:intron 20.0%
!! TATTACCAAAATATCAATTC+AGG + Chr6:56097411-56097430 None:intergenic 20.0%
!! TCTAAAAAACGAGATTATAA+TGG + Chr6:56094840-56094859 None:intergenic 20.0%
!! TTATTTAGACTTAAAGGAAA+GGG + Chr6:56093389-56093408 None:intergenic 20.0%
!! TTTGGAAGTAATTTATTGTA+TGG + Chr6:56093999-56094018 None:intergenic 20.0%
!!! AATAGTTGTTTCAGAAAAAT+AGG + Chr6:56095939-56095958 None:intergenic 20.0%
!!! AATTCTTAAAAAGGTGTATA+AGG + Chr6:56095205-56095224 None:intergenic 20.0%
!!! ACATTTTATTATTTTTGAGC+AGG - Chr6:56098747-56098766 MsG0680033083.01.T01:intron 20.0%
!!! AGTTAATAATGCTTGTTATT+AGG - Chr6:56093094-56093113 MsG0680033083.01.T01:CDS 20.0%
!!! ATAGTTGTTTCAGAAAAATA+GGG + Chr6:56095938-56095957 None:intergenic 20.0%
!!! ATTCTTAAAAAGGTGTATAA+GGG + Chr6:56095204-56095223 None:intergenic 20.0%
!!! CATTTTATTATTTTTGAGCA+GGG - Chr6:56098748-56098767 MsG0680033083.01.T01:intron 20.0%
!!! GCATTTTTCATTCTAATAAA+AGG + Chr6:56098081-56098100 None:intergenic 20.0%
!!! GTTCAATATTTTTATGCAAA+AGG - Chr6:56098278-56098297 MsG0680033083.01.T01:intron 20.0%
!!! TCAAAATCAAACTTTTCTTT+TGG + Chr6:56095450-56095469 None:intergenic 20.0%
! AATAAAAACGGGGTATATAT+AGG - Chr6:56094896-56094915 MsG0680033083.01.T01:intron 25.0%
! AATAAAAAGAATGATCATGC+TGG - Chr6:56095246-56095265 MsG0680033083.01.T01:intron 25.0%
! AATATCAATTCAGGAACATA+AGG + Chr6:56097402-56097421 None:intergenic 25.0%
! AATCCTTATCCTAAAATGTT+GGG - Chr6:56096402-56096421 MsG0680033083.01.T01:intron 25.0%
! AATTGAAAGAGGTGATATAA+GGG - Chr6:56097264-56097283 MsG0680033083.01.T01:intron 25.0%
! ATCAAAAAGAACAAAAGTAG+TGG + Chr6:56098592-56098611 None:intergenic 25.0%
! ATGATTTAACTAAGTTGTGT+TGG - Chr6:56095517-56095536 MsG0680033083.01.T01:intron 25.0%
! CAAAAGGTAAAACTTGATAT+AGG + Chr6:56093422-56093441 None:intergenic 25.0%
! CTAATCCTAAAATGTTTGAT+TGG - Chr6:56094694-56094713 MsG0680033083.01.T01:intron 25.0%
! CTTATTTAGACTTAAAGGAA+AGG + Chr6:56093390-56093409 None:intergenic 25.0%
! GAAATCACAAAAAACACAAA+AGG + Chr6:56093438-56093457 None:intergenic 25.0%
! GAAGAAAGAATTTCATTGAA+TGG + Chr6:56097086-56097105 None:intergenic 25.0%
! GTAAAACAGAAGAGATAATA+GGG + Chr6:56096106-56096125 None:intergenic 25.0%
! GTGAGACAATTGAATAAAAA+CGG - Chr6:56094884-56094903 MsG0680033083.01.T01:intron 25.0%
! TAAAGATTGACACATTGATA+AGG + Chr6:56096169-56096188 None:intergenic 25.0%
! TAATCCTTATCCTAAAATGT+TGG - Chr6:56096401-56096420 MsG0680033083.01.T01:intron 25.0%
! TAATTGAAAGAGGTGATATA+AGG - Chr6:56097263-56097282 MsG0680033083.01.T01:intron 25.0%
! TACGTAATTTCAGATGTTAT+TGG - Chr6:56097235-56097254 MsG0680033083.01.T01:intron 25.0%
! TATTTAGACTTAAAGGAAAG+GGG + Chr6:56093388-56093407 None:intergenic 25.0%
! TCATAGATGTTATCAAATCT+TGG - Chr6:56094526-56094545 MsG0680033083.01.T01:CDS 25.0%
! TGAGACAATTGAATAAAAAC+GGG - Chr6:56094885-56094904 MsG0680033083.01.T01:intron 25.0%
! TTATCAGGTCAAGATTAAAA+TGG - Chr6:56093236-56093255 MsG0680033083.01.T01:intron 25.0%
! TTGTAACCAAAAATCATTTG+TGG + Chr6:56095085-56095104 None:intergenic 25.0%
! TTGTGTGAATTTACCTTATA+AGG + Chr6:56096981-56097000 None:intergenic 25.0%
!! AATAGTTGTTTCGGAAAAAT+AGG + Chr6:56095588-56095607 None:intergenic 25.0%
!! ATAGTTGTTTCGGAAAAATA+GGG + Chr6:56095587-56095606 None:intergenic 25.0%
!! ATGTCTCTCTAGATATTTTT+AGG + Chr6:56094727-56094746 None:intergenic 25.0%
!! ATGTTAGTACAAATTTTCGT+CGG + Chr6:56098731-56098750 None:intergenic 25.0%
!! ATGTTCCTGAATTGATATTT+TGG - Chr6:56097403-56097422 MsG0680033083.01.T01:intron 25.0%
!! ATTGTTAGTGGATATCTTTA+GGG + Chr6:56097859-56097878 None:intergenic 25.0%
!! TATTGTTAGTGGATATCTTT+AGG + Chr6:56097860-56097879 None:intergenic 25.0%
!! TTAGTTGTTTCGGAAAAATA+GGG + Chr6:56095663-56095682 None:intergenic 25.0%
!! TTTAGTTCCTATTGAAAGAT+CGG - Chr6:56093531-56093550 MsG0680033083.01.T01:intron 25.0%
!! TTTAGTTGTTTCGGAAAAAT+AGG + Chr6:56095664-56095683 None:intergenic 25.0%
!! TTTCAACCACAAATGATTTT+TGG - Chr6:56095076-56095095 MsG0680033083.01.T01:intron 25.0%
!! TTTGAAAAATTAGGTGCTAT+GGG - Chr6:56097648-56097667 MsG0680033083.01.T01:intron 25.0%
!! TTTTAATGAAGGTCCTTATA+AGG - Chr6:56096965-56096984 MsG0680033083.01.T01:intron 25.0%
!!! AATCTCGTTTTTTAGATTGA+TGG - Chr6:56094844-56094863 MsG0680033083.01.T01:intron 25.0%
!!! AGAATAAAGGCAAGTTTTTT+TGG - Chr6:56097773-56097792 MsG0680033083.01.T01:intron 25.0%
!!! ATCTCGTTTTTTAGATTGAT+GGG - Chr6:56094845-56094864 MsG0680033083.01.T01:intron 25.0%
!!! ATTTTTGTTTTTATCATGCG+TGG - Chr6:56098497-56098516 MsG0680033083.01.T01:intron 25.0%
!!! GCTGTGAGTTTTTTTTTTTT+TGG - Chr6:56093686-56093705 MsG0680033083.01.T01:intron 25.0%
!!! GTGAGTTTTTTTTTTTTTGG+TGG - Chr6:56093689-56093708 MsG0680033083.01.T01:intron 25.0%
!!! TTGAAATACTCGCTATTTTT+AGG + Chr6:56096308-56096327 None:intergenic 25.0%
!!! TTGAAATCGATCTTTTTTGA+GGG + Chr6:56092939-56092958 None:intergenic 25.0%
!!! TTTTGAAAAATTAGGTGCTA+TGG - Chr6:56097647-56097666 MsG0680033083.01.T01:intron 25.0%
AAATGTGTGGTCTATATATG+AGG - Chr6:56098697-56098716 MsG0680033083.01.T01:intron 30.0%
AATAAACTACCCATAAACGA+TGG + Chr6:56097826-56097845 None:intergenic 30.0%
AATGCTTGCTTAGATTGAAA+AGG + Chr6:56096557-56096576 None:intergenic 30.0%
ACTATATATGAGATCGAAAC+TGG - Chr6:56098342-56098361 MsG0680033083.01.T01:intron 30.0%
ACTGATAAGCATGGAAAAAT+AGG + Chr6:56096205-56096224 None:intergenic 30.0%
AGAAAAATGGAGGGAAAAAT+GGG + Chr6:56095726-56095745 None:intergenic 30.0%
AGTGTATTCTATGAGTAACT+TGG + Chr6:56094277-56094296 None:intergenic 30.0%
AGTTTCGATCTCATATATAG+TGG + Chr6:56098343-56098362 None:intergenic 30.0%
ATAAACTACCCATAAACGAT+GGG + Chr6:56097825-56097844 None:intergenic 30.0%
ATACTGTGTTTACTAAGGAT+TGG + Chr6:56096352-56096371 None:intergenic 30.0%
ATATCAATATAGTAGGTGTG+TGG + Chr6:56097520-56097539 None:intergenic 30.0%
ATTCCTAAAGCAATGCTTAT+AGG + Chr6:56097182-56097201 None:intergenic 30.0%
ATTGGTCATGTAATTGAAAG+AGG - Chr6:56097253-56097272 MsG0680033083.01.T01:intron 30.0%
CATCAGAAAACTATTGTTAG+TGG + Chr6:56097871-56097890 None:intergenic 30.0%
CGTAAAACAGAAGAGATAAT+AGG + Chr6:56096107-56096126 None:intergenic 30.0%
CTATATATGAGATCGAAACT+GGG - Chr6:56098343-56098362 MsG0680033083.01.T01:intron 30.0%
CTGTTGTATGCTAATAACTT+GGG - Chr6:56093662-56093681 MsG0680033083.01.T01:intron 30.0%
GAATCATATCTAGATAGAAC+GGG - Chr6:56094420-56094439 MsG0680033083.01.T01:CDS 30.0%
GACAATGCATAATATATGCA+AGG + Chr6:56093737-56093756 None:intergenic 30.0%
GACTTCTCTGCATAAAAAAT+AGG + Chr6:56096254-56096273 None:intergenic 30.0%
GAGACAATTGAATAAAAACG+GGG - Chr6:56094886-56094905 MsG0680033083.01.T01:intron 30.0%
GATCAATGGCTAAAATTGAA+TGG + Chr6:56095777-56095796 None:intergenic 30.0%
GATCTAATGGCTTAGAAAAA+TGG + Chr6:56095739-56095758 None:intergenic 30.0%
GGAATCATATCTAGATAGAA+CGG - Chr6:56094419-56094438 MsG0680033083.01.T01:CDS 30.0%
GTGTATAAGGGATACAAAAT+CGG + Chr6:56095192-56095211 None:intergenic 30.0%
GTGTATTCTATGAGTAACTT+GGG + Chr6:56094276-56094295 None:intergenic 30.0%
TAATGGCTTAGAAAAATGGA+GGG + Chr6:56095735-56095754 None:intergenic 30.0%
TAGAAAAATGGAGGGAAAAA+TGG + Chr6:56095727-56095746 None:intergenic 30.0%
TATATATGAGATCGAAACTG+GGG - Chr6:56098344-56098363 MsG0680033083.01.T01:intron 30.0%
TCAAAATTATGCCGTAAAGA+AGG - Chr6:56098870-56098889 MsG0680033083.01.T01:intron 30.0%
TCATGCTTTCAATTGTCATT+CGG + Chr6:56098185-56098204 None:intergenic 30.0%
TCGTTTATGGGTAGTTTATT+TGG - Chr6:56097826-56097845 MsG0680033083.01.T01:intron 30.0%
TCTTTACTTCCGAAACAAAT+TGG - Chr6:56096080-56096099 MsG0680033083.01.T01:intron 30.0%
TGAACTCAAAAACGTTCATA+GGG + Chr6:56097061-56097080 None:intergenic 30.0%
TGATATAAGGGAAACTGAAA+AGG - Chr6:56097276-56097295 MsG0680033083.01.T01:intron 30.0%
TTCATGAAAATGATGCTAGT+GGG + Chr6:56096717-56096736 None:intergenic 30.0%
TTGAACTCAAAAACGTTCAT+AGG + Chr6:56097062-56097081 None:intergenic 30.0%
TTGACATACTGTGTTTACTA+AGG + Chr6:56096357-56096376 None:intergenic 30.0%
TTGTTCGAATCATTCATGTT+TGG + Chr6:56094475-56094494 None:intergenic 30.0%
TTTACAGATTTGTCAAGGTT+CGG - Chr6:56098311-56098330 MsG0680033083.01.T01:intron 30.0%
TTTCTTGGAAAGGAAAAAAC+CGG - Chr6:56096580-56096599 MsG0680033083.01.T01:intron 30.0%
! ATAATAGGGCCAATTTGTTT+CGG + Chr6:56096092-56096111 None:intergenic 30.0%
! CACTAACAATAGTTTTCTGA+TGG - Chr6:56097869-56097888 MsG0680033083.01.T01:intron 30.0%
! CATTTTCATGAACATGTTAC+TGG - Chr6:56096725-56096744 MsG0680033083.01.T01:intron 30.0%
! GGATAAACTTTGTTTACCTT+GGG + Chr6:56098470-56098489 None:intergenic 30.0%
! GTAAGCCAATCAAACATTTT+AGG + Chr6:56094702-56094721 None:intergenic 30.0%
! TGACAAGCAAATTCTTTTCA+AGG - Chr6:56098813-56098832 MsG0680033083.01.T01:intron 30.0%
! TTGGTTGTAATTAAGTTGTC+TGG - Chr6:56097792-56097811 MsG0680033083.01.T01:intron 30.0%
! TTTTTCTCCTTCATTCATCA+AGG - Chr6:56093306-56093325 MsG0680033083.01.T01:intron 30.0%
! TTTTTGTGATTTCATCGTCT+AGG - Chr6:56093445-56093464 MsG0680033083.01.T01:intron 30.0%
!! AGTCAATATTGCTTGTTATC+AGG - Chr6:56093221-56093240 MsG0680033083.01.T01:intron 30.0%
!! GCAATTGTACGTTTTAATGA+AGG - Chr6:56096954-56096973 MsG0680033083.01.T01:intron 30.0%
!! TACAAGGTCGCTATTTTATA+GGG - Chr6:56092647-56092666 MsG0680033083.01.T01:CDS 30.0%
!! TTACAAGGTCGCTATTTTAT+AGG - Chr6:56092646-56092665 MsG0680033083.01.T01:CDS 30.0%
!! TTTAATTTGGGCATATGTCA+TGG + Chr6:56095344-56095363 None:intergenic 30.0%
!!! GACAAAATTGTGACCTTTTT+TGG - Chr6:56097482-56097501 MsG0680033083.01.T01:intron 30.0%
!!! GTTGAAATCGATCTTTTTTG+AGG + Chr6:56092940-56092959 None:intergenic 30.0%
!!! TCTCGTTTTTTAGATTGATG+GGG - Chr6:56094846-56094865 MsG0680033083.01.T01:intron 30.0%
!!! TTTTTTTTTTTGGTGGTGTC+CGG - Chr6:56093696-56093715 MsG0680033083.01.T01:intron 30.0%
AAAAATGGAGGGAAAAATGG+GGG + Chr6:56095724-56095743 None:intergenic 35.0%
AAGCATTCTCTTTCTTGGAA+AGG - Chr6:56096570-56096589 MsG0680033083.01.T01:intron 35.0%
AAGTAGGGACTAAACTTACA+AGG - Chr6:56092631-56092650 MsG0680033083.01.T01:CDS 35.0%
ACAAAACGATGCAATACGAT+TGG - Chr6:56094982-56095001 MsG0680033083.01.T01:intron 35.0%
ATAAGGGAAACTGAAAAGGA+TGG - Chr6:56097280-56097299 MsG0680033083.01.T01:intron 35.0%
ATCAGCACATTAAAATCAGC+AGG + Chr6:56098793-56098812 None:intergenic 35.0%
ATCATCAGATGCCTTCTTTA+CGG + Chr6:56098884-56098903 None:intergenic 35.0%
ATTTGGAAGAAATGTGCAAG+TGG - Chr6:56094582-56094601 MsG0680033083.01.T01:intron 35.0%
CAACAACATTAGTAAACAGC+TGG + Chr6:56096834-56096853 None:intergenic 35.0%
CACTATGTGGATATGTGATT+AGG - Chr6:56094110-56094129 MsG0680033083.01.T01:CDS 35.0%
CATCACAAACAAACCAAACA+CGG - Chr6:56094744-56094763 MsG0680033083.01.T01:intron 35.0%
CATGCTAAAAAGACTTGTGT+TGG - Chr6:56092544-56092563 MsG0680033083.01.T01:CDS 35.0%
CATTGACATACTGATAAGCA+TGG + Chr6:56096214-56096233 None:intergenic 35.0%
CCATTAGATCTTGCACATTT+AGG - Chr6:56095749-56095768 MsG0680033083.01.T01:intron 35.0%
CCTAAATGTGCAAGATCTAA+TGG + Chr6:56095752-56095771 None:intergenic 35.0%
CTAATGGCTTAGAAAAATGG+AGG + Chr6:56095736-56095755 None:intergenic 35.0%
CTAATGTTGTTGTCGTCAAT+AGG - Chr6:56096842-56096861 MsG0680033083.01.T01:intron 35.0%
CTATCTAGATATGATTCCCA+TGG + Chr6:56094417-56094436 None:intergenic 35.0%
GAAAAATGGAGGGAAAAATG+GGG + Chr6:56095725-56095744 None:intergenic 35.0%
GAGTTGCTAATGCCTTTAAT+GGG - Chr6:56097670-56097689 MsG0680033083.01.T01:intron 35.0%
GCTGTTGTATGCTAATAACT+TGG - Chr6:56093661-56093680 MsG0680033083.01.T01:intron 35.0%
GGTTATTGATCTCACTTTAG+AGG - Chr6:56097315-56097334 MsG0680033083.01.T01:intron 35.0%
GTTCATGAAAATGATGCTAG+TGG + Chr6:56096718-56096737 None:intergenic 35.0%
GTTGTCATGGTTTCCAAAAA+AGG + Chr6:56097498-56097517 None:intergenic 35.0%
TAAGCAAGCATTCTCTTTCT+TGG - Chr6:56096565-56096584 MsG0680033083.01.T01:intron 35.0%
TATCAGCTTAGTCCCATTAA+AGG + Chr6:56097685-56097704 None:intergenic 35.0%
TATTCTATGAGTAACTTGGG+TGG + Chr6:56094273-56094292 None:intergenic 35.0%
TATTGTGGGTCATACAAAGA+AGG - Chr6:56093907-56093926 MsG0680033083.01.T01:intron 35.0%
TCATGAAAATGATGCTAGTG+GGG + Chr6:56096716-56096735 None:intergenic 35.0%
TCTCTACTTCCGAAACAAAT+TGG - Chr6:56095883-56095902 MsG0680033083.01.T01:intron 35.0%
TGCAAGACACGCATATATTT+AGG - Chr6:56097548-56097567 MsG0680033083.01.T01:intron 35.0%
TGGAGTTTGACTACACTATT+TGG - Chr6:56094565-56094584 MsG0680033083.01.T01:CDS 35.0%
TGTGGAGATCATCATATTGT+GGG - Chr6:56093893-56093912 MsG0680033083.01.T01:intron 35.0%
TTGAAATTTGGCTGACACTT+CGG + Chr6:56098119-56098138 None:intergenic 35.0%
TTGCTTAGATTGAAAAGGTC+TGG + Chr6:56096552-56096571 None:intergenic 35.0%
TTGTGGAGATCATCATATTG+TGG - Chr6:56093892-56093911 MsG0680033083.01.T01:intron 35.0%
! ATGTTTTACACTTGCGACAA+CGG + Chr6:56098434-56098453 None:intergenic 35.0%
! CGCTACTCTTTTATTGACAT+TGG - Chr6:56098052-56098071 MsG0680033083.01.T01:intron 35.0%
! CGGATAAACTTTGTTTACCT+TGG + Chr6:56098471-56098490 None:intergenic 35.0%
! CTACCTATAAGCATTGCTTT+AGG - Chr6:56097176-56097195 MsG0680033083.01.T01:intron 35.0%
! GTTGTAATTAAGTTGTCTGG+AGG - Chr6:56097795-56097814 MsG0680033083.01.T01:intron 35.0%
! TAGGAAATGCCCAACATTTT+AGG + Chr6:56096414-56096433 None:intergenic 35.0%
! TTTGTAGGGCCAATTTGTTT+CGG + Chr6:56095895-56095914 None:intergenic 35.0%
! TTTGTCTGTTTCTTTGTAGC+TGG - Chr6:56097351-56097370 MsG0680033083.01.T01:intron 35.0%
! TTTTGTTCTTTTTGATCGCC+AGG - Chr6:56098596-56098615 MsG0680033083.01.T01:intron 35.0%
!! AAAAGACTTGTGTTGGTTTG+TGG - Chr6:56092551-56092570 MsG0680033083.01.T01:CDS 35.0%
!! AAAGACTTGTGTTGGTTTGT+GGG - Chr6:56092552-56092571 MsG0680033083.01.T01:CDS 35.0%
!! AGGGTTAGCTTTAGTTGTTT+CGG + Chr6:56095673-56095692 None:intergenic 35.0%
!! ATTCTTTTCAAGGTTGAGGT+TGG - Chr6:56098823-56098842 MsG0680033083.01.T01:intron 35.0%
!! GCAAATTCTTTTCAAGGTTG+AGG - Chr6:56098819-56098838 MsG0680033083.01.T01:intron 35.0%
!! TTCAATGACATTTTGACGTG+TGG + Chr6:56095026-56095045 None:intergenic 35.0%
!!! ATGCCCAACATTTTAGGATA+AGG + Chr6:56096408-56096427 None:intergenic 35.0%
!!! TTGGTGTCATGACAATCTTT+TGG - Chr6:56094545-56094564 MsG0680033083.01.T01:CDS 35.0%
!!! TTTTTTTTTTGGTGGTGTCC+GGG - Chr6:56093697-56093716 MsG0680033083.01.T01:intron 35.0%
AAAACGTTCATAGGGATAGC+AGG + Chr6:56097053-56097072 None:intergenic 40.0%
AAAAGGATGGAAGGAAAAGC+AGG - Chr6:56097293-56097312 MsG0680033083.01.T01:intron 40.0%
AAAATGGAGGGAAAAATGGG+GGG + Chr6:56095723-56095742 None:intergenic 40.0%
AAAGGATGGAAGGAAAAGCA+GGG - Chr6:56097294-56097313 MsG0680033083.01.T01:intron 40.0%
AAGCATGATTGAGTCAACTG+AGG - Chr6:56098197-56098216 MsG0680033083.01.T01:intron 40.0%
ACAGATGCCGATCTTTCAAT+AGG + Chr6:56093541-56093560 None:intergenic 40.0%
ACCAGCTTAACTAAGCTCAT+GGG - Chr6:56093760-56093779 MsG0680033083.01.T01:CDS 40.0%
AGAAGATGTGCACACAGAAA+AGG - Chr6:56097925-56097944 MsG0680033083.01.T01:intron 40.0%
AGCTGAGATTGGAGTGTATT+TGG + Chr6:56096619-56096638 None:intergenic 40.0%
AGTCTCAAGTAGCAAGGTAA+GGG + Chr6:56098032-56098051 None:intergenic 40.0%
ATACAAATAGGCGCATCCAT+GGG - Chr6:56094398-56094417 MsG0680033083.01.T01:CDS 40.0%
ATGTAGTTGTGTGTGAGTGT+GGG - Chr6:56095560-56095579 MsG0680033083.01.T01:intron 40.0%
CAAGTCATCTGATAAAGACG+CGG + Chr6:56098151-56098170 None:intergenic 40.0%
CACATTACGCCCAATAAACT+GGG + Chr6:56098625-56098644 None:intergenic 40.0%
CATAATATATGCAAGGTCCG+AGG + Chr6:56093730-56093749 None:intergenic 40.0%
CATGTTACTGGTCGATGAAA+AGG - Chr6:56096737-56096756 MsG0680033083.01.T01:intron 40.0%
CGCAAGTGTAAAACATGCAA+GGG - Chr6:56098438-56098457 MsG0680033083.01.T01:intron 40.0%
CTTGATCAATGAACGTGATG+AGG - Chr6:56098650-56098669 MsG0680033083.01.T01:intron 40.0%
GAAGATGTGCACACAGAAAA+GGG - Chr6:56097926-56097945 MsG0680033083.01.T01:intron 40.0%
GGAGTTGCTAATGCCTTTAA+TGG - Chr6:56097669-56097688 MsG0680033083.01.T01:intron 40.0%
GGGACTAAGCTGATACTTAA+TGG - Chr6:56097690-56097709 MsG0680033083.01.T01:intron 40.0%
GTGTATTTGGCAGACATCAT+TGG + Chr6:56096606-56096625 None:intergenic 40.0%
TAACATCCCAGACTACTTAC+AGG + Chr6:56092591-56092610 None:intergenic 40.0%
TACCAGCTTAACTAAGCTCA+TGG - Chr6:56093759-56093778 MsG0680033083.01.T01:CDS 40.0%
TATACAAATAGGCGCATCCA+TGG - Chr6:56094397-56094416 MsG0680033083.01.T01:CDS 40.0%
TATCGAAATGCTCATGCTTC+CGG + Chr6:56093608-56093627 None:intergenic 40.0%
TCGCAAGTGTAAAACATGCA+AGG - Chr6:56098437-56098456 MsG0680033083.01.T01:intron 40.0%
TCTCCTTCATTCATCAAGGA+GGG - Chr6:56093310-56093329 MsG0680033083.01.T01:intron 40.0%
TGAAATTTGGCTGACACTTC+GGG + Chr6:56098118-56098137 None:intergenic 40.0%
TGAGCTTAGTTAAGCTGGTA+AGG + Chr6:56093759-56093778 None:intergenic 40.0%
TTCTCCTTCATTCATCAAGG+AGG - Chr6:56093309-56093328 MsG0680033083.01.T01:intron 40.0%
! CAACTCACACACACATTTTG+AGG + Chr6:56096662-56096681 None:intergenic 40.0%
! TTGGGTGGTGATGTAAATCT+TGG + Chr6:56094258-56094277 None:intergenic 40.0%
! TTTGATTTCACGTCTTGTCG+CGG - Chr6:56093502-56093521 MsG0680033083.01.T01:intron 40.0%
!! AACTGTCGAGAAAGTGTCTA+CGG - Chr6:56097106-56097125 MsG0680033083.01.T01:intron 40.0%
!! AAGAAGGCATCTGATGATGT+TGG - Chr6:56098886-56098905 MsG0680033083.01.T01:intron 40.0%
!! AAGACTTGTGTTGGTTTGTG+GGG - Chr6:56092553-56092572 MsG0680033083.01.T01:CDS 40.0%
!! CTAGAAAAGATTTGGTGGCA+AGG - Chr6:56096886-56096905 MsG0680033083.01.T01:intron 40.0%
!!! CACCAAATCTTTTCTAGCTG+CGG + Chr6:56096883-56096902 None:intergenic 40.0%
!!! CGTTTTTTAGATTGATGGGG+AGG - Chr6:56094849-56094868 MsG0680033083.01.T01:intron 40.0%
!!! GTGTAGTTTGTCGTTTTGTG+CGG - Chr6:56093477-56093496 MsG0680033083.01.T01:intron 40.0%
!!! TTTTTTTTTGGTGGTGTCCG+GGG - Chr6:56093698-56093717 MsG0680033083.01.T01:intron 40.0%
AAATGGAGGGAAAAATGGGG+GGG + Chr6:56095722-56095741 None:intergenic 45.0%
AACTACCCATAAACGATGGG+AGG + Chr6:56097822-56097841 None:intergenic 45.0%
AAGGTGACGTGTACACTATG+TGG - Chr6:56094097-56094116 MsG0680033083.01.T01:intron 45.0%
AAGGTGCAATACGTGTGAGT+AGG + Chr6:56096501-56096520 None:intergenic 45.0%
AATCATGGACCGTGGTTGTT+CGG + Chr6:56094775-56094794 None:intergenic 45.0%
ACCACTTGCATTGCTCTCTT+TGG - Chr6:56097447-56097466 MsG0680033083.01.T01:intron 45.0%
ATTTGGCAGACATCATTGGC+CGG + Chr6:56096602-56096621 None:intergenic 45.0%
CACTTGCATTGCTCTCTTTG+GGG - Chr6:56097449-56097468 MsG0680033083.01.T01:intron 45.0%
CATGATTGAGTCAACTGAGG+TGG - Chr6:56098200-56098219 MsG0680033083.01.T01:intron 45.0%
CCACTTGCATTGCTCTCTTT+GGG - Chr6:56097448-56097467 MsG0680033083.01.T01:intron 45.0%
CGCAGCTAGAAAAGATTTGG+TGG - Chr6:56096881-56096900 MsG0680033083.01.T01:intron 45.0%
CGGAGCTGTTCGTTGAAATT+TGG + Chr6:56098131-56098150 None:intergenic 45.0%
CTCCTTCATTCATCAAGGAG+GGG - Chr6:56093311-56093330 MsG0680033083.01.T01:intron 45.0%
GAGTCTCAAGTAGCAAGGTA+AGG + Chr6:56098033-56098052 None:intergenic 45.0%
GATGTAGTTGTGTGTGAGTG+TGG - Chr6:56095559-56095578 MsG0680033083.01.T01:intron 45.0%
GCACATTACGCCCAATAAAC+TGG + Chr6:56098626-56098645 None:intergenic 45.0%
GGCAATCCTGTAAGTAGTCT+GGG - Chr6:56092582-56092601 MsG0680033083.01.T01:CDS 45.0%
GGGAAACTGAAAAGGATGGA+AGG - Chr6:56097284-56097303 MsG0680033083.01.T01:intron 45.0%
GTGATTTCATCGTCTAGGTG+CGG - Chr6:56093450-56093469 MsG0680033083.01.T01:intron 45.0%
GTGTGTGAGTTGCTCACATT+TGG - Chr6:56096670-56096689 MsG0680033083.01.T01:intron 45.0%
TAAGCTGCATGTCATCGTGA+TGG - Chr6:56098554-56098573 MsG0680033083.01.T01:intron 45.0%
TACCCCTCCTTGATGAATGA+AGG + Chr6:56093316-56093335 None:intergenic 45.0%
TAGTAGGTGTGTGGTTGTCA+TGG + Chr6:56097511-56097530 None:intergenic 45.0%
TCAGGTCCATGGTTGAAGAA+GGG - Chr6:56096910-56096929 MsG0680033083.01.T01:intron 45.0%
TCATTGGCCACCATTGACAA+TGG - Chr6:56098402-56098421 MsG0680033083.01.T01:intron 45.0%
TCCCATGAGCTTAGTTAAGC+TGG + Chr6:56093764-56093783 None:intergenic 45.0%
TGTAGTTGTGTGTGAGTGTG+GGG - Chr6:56095561-56095580 MsG0680033083.01.T01:intron 45.0%
TTCAGGTCCATGGTTGAAGA+AGG - Chr6:56096909-56096928 MsG0680033083.01.T01:intron 45.0%
TTGTTCGGATTGTCCGTGTT+TGG + Chr6:56094760-56094779 None:intergenic 45.0%
! ACTCCAATCTCAGCTGTTTC+TGG - Chr6:56096624-56096643 MsG0680033083.01.T01:intron 45.0%
! AGATCGAAACTGGGGTTGAT+TGG - Chr6:56098352-56098371 MsG0680033083.01.T01:intron 45.0%
! TCAACCCTCTGAAGGAATCA+TGG + Chr6:56094790-56094809 None:intergenic 45.0%
!! AAGATTTGGTGGCAAGGTTC+AGG - Chr6:56096892-56096911 MsG0680033083.01.T01:intron 45.0%
!! ACTGTCGAGAAAGTGTCTAC+GGG - Chr6:56097107-56097126 MsG0680033083.01.T01:intron 45.0%
!! ATTTTTGAGCAGGGAGCAGT+AGG - Chr6:56098757-56098776 MsG0680033083.01.T01:intron 45.0%
!! TGTTGGTTTGTGGGGTTAGT+CGG - Chr6:56092561-56092580 MsG0680033083.01.T01:CDS 45.0%
!! TTCAAGGTTGAGGTTGGTGA+AGG - Chr6:56098829-56098848 MsG0680033083.01.T01:intron 45.0%
!! TTGGTTGATTCGAGAGAAGC+AGG - Chr6:56096689-56096708 MsG0680033083.01.T01:intron 45.0%
!! ATAAAAACAAAAATTATATT+CGG + Chr6:56098491-56098510 None:intergenic 5.0%
AATGGAGGGAAAAATGGGGG+GGG + Chr6:56095721-56095740 None:intergenic 50.0%
ACGGACAATCCGAACAACCA+CGG - Chr6:56094763-56094782 MsG0680033083.01.T01:intron 50.0%
ACGGTCCATGATTCCTTCAG+AGG - Chr6:56094782-56094801 MsG0680033083.01.T01:intron 50.0%
AGGTCCATGGTTGAAGAAGG+GGG - Chr6:56096912-56096931 MsG0680033083.01.T01:intron 50.0%
ATGCACCCAGTGTGCTTCAT+TGG - Chr6:56098386-56098405 MsG0680033083.01.T01:intron 50.0%
ATGCTTACCGGGAAACTTCC+CGG + Chr6:56092508-56092527 None:intergenic 50.0%
CAGGTCCATGGTTGAAGAAG+GGG - Chr6:56096911-56096930 MsG0680033083.01.T01:intron 50.0%
CCCAAAGAGAGCAATGCAAG+TGG + Chr6:56097451-56097470 None:intergenic 50.0%
CCTCCAGAAACAGCTGAGAT+TGG + Chr6:56096630-56096649 None:intergenic 50.0%
CGCCGCAGCTAGAAAAGATT+TGG - Chr6:56096878-56096897 MsG0680033083.01.T01:intron 50.0%
CGGCAATCCTGTAAGTAGTC+TGG - Chr6:56092581-56092600 MsG0680033083.01.T01:CDS 50.0%
CGGTCCATGATTCCTTCAGA+GGG - Chr6:56094783-56094802 MsG0680033083.01.T01:intron 50.0%
GAGCACTCCATTGTCAATGG+TGG + Chr6:56098412-56098431 None:intergenic 50.0%
GAGGTCCTCCCATCGTTTAT+GGG - Chr6:56097814-56097833 MsG0680033083.01.T01:intron 50.0%
GATAGCAGGCGAGTGTACTT+TGG + Chr6:56097039-56097058 None:intergenic 50.0%
GCCAGGTGACCCAGTTTATT+GGG - Chr6:56098613-56098632 MsG0680033083.01.T01:intron 50.0%
GGGTGTCAACGTTGTAGATC+CGG - Chr6:56093586-56093605 MsG0680033083.01.T01:intron 50.0%
GTAGCGAGTCTCAAGTAGCA+AGG + Chr6:56098038-56098057 None:intergenic 50.0%
GTCCTCACTCACATGCTTAC+CGG + Chr6:56092520-56092539 None:intergenic 50.0%
TCCTCACTCACATGCTTACC+GGG + Chr6:56092519-56092538 None:intergenic 50.0%
TCTGAAGGAATCATGGACCG+TGG + Chr6:56094783-56094802 None:intergenic 50.0%
TGTACCCCCTTCTTCAACCA+TGG + Chr6:56096919-56096938 None:intergenic 50.0%
! ACGGAGCACTCCATTGTCAA+TGG + Chr6:56098415-56098434 None:intergenic 50.0%
!! CCAATCTCAGCTGTTTCTGG+AGG - Chr6:56096627-56096646 MsG0680033083.01.T01:intron 50.0%
!! CTCTGAGATCAACCCTCTGA+AGG + Chr6:56094798-56094817 None:intergenic 50.0%
!! TCATCGTGATGGACGACACA+GGG - Chr6:56098565-56098584 MsG0680033083.01.T01:intron 50.0%
ATGGAGGGAAAAATGGGGGG+GGG + Chr6:56095720-56095739 None:intergenic 55.0%
CGCCAGGTGACCCAGTTTAT+TGG - Chr6:56098612-56098631 MsG0680033083.01.T01:intron 55.0%
GAAGTCGCTGCGTACATGAC+AGG - Chr6:56097723-56097742 MsG0680033083.01.T01:intron 55.0%
GCCCAATAAACTGGGTCACC+TGG + Chr6:56098617-56098636 None:intergenic 55.0%
GGAGGTCCTCCCATCGTTTA+TGG - Chr6:56097813-56097832 MsG0680033083.01.T01:intron 55.0%
GGGGGGGAATATTAGGGCTA+GGG + Chr6:56095692-56095711 None:intergenic 55.0%
GGTGGCCAATGAAGCACACT+GGG + Chr6:56098394-56098413 None:intergenic 55.0%
GTCATGTACGCAGCGACTTC+AGG + Chr6:56097723-56097742 None:intergenic 55.0%
TCCCGGTAAGCATGTGAGTG+AGG - Chr6:56092515-56092534 MsG0680033083.01.T01:CDS 55.0%
TGACCTACCGGGAAGTTTCC+CGG - Chr6:56092498-56092517 MsG0680033083.01.T01:CDS 55.0%
TGGTGGCCAATGAAGCACAC+TGG + Chr6:56098395-56098414 None:intergenic 55.0%
TTACCGGGAAACTTCCCGGT+AGG + Chr6:56092504-56092523 None:intergenic 55.0%
!! GTCATCGTGATGGACGACAC+AGG - Chr6:56098564-56098583 MsG0680033083.01.T01:intron 55.0%
AAGGTCCGAGGTTCGAACCC+CGG + Chr6:56093718-56093737 None:intergenic 60.0%
GGGGGGGGAATATTAGGGCT+AGG + Chr6:56095693-56095712 None:intergenic 60.0%
GGTGGCAAGGTTCAGGTCCA+TGG - Chr6:56096899-56096918 MsG0680033083.01.T01:intron 60.0%
TGGAGGGAAAAATGGGGGGG+GGG + Chr6:56095719-56095738 None:intergenic 60.0%
! CATGCAAGGGTGCAGTCCCA+AGG - Chr6:56098451-56098470 MsG0680033083.01.T01:intron 60.0%
AGGGAAAAATGGGGGGGGGG+GGG + Chr6:56095716-56095735 None:intergenic 65.0%
GAGGGAAAAATGGGGGGGGG+GGG + Chr6:56095717-56095736 None:intergenic 65.0%
GGAGGGAAAAATGGGGGGGG+GGG + Chr6:56095718-56095737 None:intergenic 65.0%
GGGGGGGGGGGGGAATATTA+GGG + Chr6:56095698-56095717 None:intergenic 65.0%
GGTGTCCGGGGTTCGAACCT+CGG - Chr6:56093710-56093729 MsG0680033083.01.T01:CDS 65.0%
AAAAATGGGGGGGGGGGGGG+GGG + Chr6:56095712-56095731 None:intergenic 70.0%
GAAAAATGGGGGGGGGGGGG+GGG + Chr6:56095713-56095732 None:intergenic 70.0%
GGAAAAATGGGGGGGGGGGG+GGG + Chr6:56095714-56095733 None:intergenic 70.0%
GGGAAAAATGGGGGGGGGGG+GGG + Chr6:56095715-56095734 None:intergenic 70.0%
GGGGGGGGGGGGGGAATATT+AGG + Chr6:56095699-56095718 None:intergenic 70.0%
AAAATGGGGGGGGGGGGGGG+GGG + Chr6:56095711-56095730 None:intergenic 75.0%
! AAATGGGGGGGGGGGGGGGG+GGG + Chr6:56095710-56095729 None:intergenic 80.0%
! AATGGGGGGGGGGGGGGGGG+GGG + Chr6:56095709-56095728 None:intergenic 85.0%
! ATGGGGGGGGGGGGGGGGGG+GGG + Chr6:56095708-56095727 None:intergenic 90.0%
Chromosome Type Strat End Strand Name
Chr6 gene 56092493 56098960 56092493 ID=MsG0680033083.01;Name=MsG0680033083.01
Chr6 mRNA 56092493 56098960 56092493 ID=MsG0680033083.01.T01;Parent=MsG0680033083.01;Name=MsG0680033083.01.T01;_AED=0.26;_eAED=0.27;_QI=0|0|0|0.87|0.85|0.87|8|0|319
Chr6 exon 56098934 56098960 56098934 ID=MsG0680033083.01.T01:exon:26809;Parent=MsG0680033083.01.T01
Chr6 exon 56094325 56094589 56094325 ID=MsG0680033083.01.T01:exon:26808;Parent=MsG0680033083.01.T01
Chr6 exon 56094109 56094205 56094109 ID=MsG0680033083.01.T01:exon:26807;Parent=MsG0680033083.01.T01
Chr6 exon 56093983 56094011 56093983 ID=MsG0680033083.01.T01:exon:26806;Parent=MsG0680033083.01.T01
Chr6 exon 56093709 56093792 56093709 ID=MsG0680033083.01.T01:exon:26805;Parent=MsG0680033083.01.T01
Chr6 exon 56092981 56093125 56092981 ID=MsG0680033083.01.T01:exon:26804;Parent=MsG0680033083.01.T01
Chr6 exon 56092782 56092902 56092782 ID=MsG0680033083.01.T01:exon:26803;Parent=MsG0680033083.01.T01
Chr6 exon 56092493 56092684 56092493 ID=MsG0680033083.01.T01:exon:26802;Parent=MsG0680033083.01.T01
Chr6 CDS 56098934 56098960 56098934 ID=MsG0680033083.01.T01:cds;Parent=MsG0680033083.01.T01
Chr6 CDS 56094325 56094589 56094325 ID=MsG0680033083.01.T01:cds;Parent=MsG0680033083.01.T01
Chr6 CDS 56094109 56094205 56094109 ID=MsG0680033083.01.T01:cds;Parent=MsG0680033083.01.T01
Chr6 CDS 56093983 56094011 56093983 ID=MsG0680033083.01.T01:cds;Parent=MsG0680033083.01.T01
Chr6 CDS 56093709 56093792 56093709 ID=MsG0680033083.01.T01:cds;Parent=MsG0680033083.01.T01
Chr6 CDS 56092981 56093125 56092981 ID=MsG0680033083.01.T01:cds;Parent=MsG0680033083.01.T01
Chr6 CDS 56092782 56092902 56092782 ID=MsG0680033083.01.T01:cds;Parent=MsG0680033083.01.T01
Chr6 CDS 56092493 56092684 56092493 ID=MsG0680033083.01.T01:cds;Parent=MsG0680033083.01.T01
Gene Sequence

>MsG0680033083.01.T01

ATGGGTGACCTACCGGGAAGTTTCCCGGATAGACGTATTCACGCCGCAGCTAGAAAAGATTTGGTGGCAAGGTTCAGGTCCATGGTTGAAGAAGGGGGTACATATCAGCTTGAAAATGCAATTGTACGTTTTAATGAAGGTCCTTATAAGGTAAATTCACACAAAGATAAGCTTAGTATGATGCACAATTCAACTTTTACCAAAGTACACTCGCCTGCTATCCCTATGAACGTTTTTGAGTTCAAGCCATTCAATGAAATTCTTTCTTCAACTGTCGAGAAAGTGTCTACGGATGTTATTGGTCATGTAATTGAAAGAGGTGATATAAGGGAAACTGAAAAGGATGGAAGGAAAAGCAGGGTTATTGATCTCACTTTAGAGGATCTTGAAAACAACCACTTGCATTGCTCTCTTTGGGGTGCTATGGGAGTTGCTAATGCCTTTAATGGGACTAAGCTGATACTTAATGGAGATTTGCCTGAAGTCGCTGCGTACATGACAGGTTCGGTGCTTGCCACTATATATGAGATCGAAACTGGGGTTGATTGGTACTTTCGATCATGCACCCAGTGTGCTTCATTGGCCACCATTGACAATGGAGTGCTCCGTTGTCGCAAGTGTAAAACATGCAAGGGTGCAGTCCCAAGGTTTAAGCTGCATGTCATCGTGATGGACGACACAGGGTCCACTACTTTTGTTCTTTTTGATCGCCAGGTGACCCAGTTTATTGGGCGTAATGTGCAAGACTTGATCAATGAACGTGATGAGGGAGCAGTAGGCAATGATTATCCTGCTGATTTTAATGTGCTGATTGACAAGCAAATTCTTTTCAAGGTTGAGGTTGGTGAAGGAAATGTCGTAAAGAAGTATCAAAATTATGCCGTAAAGAAGGCATCTGATGATGTTGGTGTCATTGAGCAGTTTATGTTTATGTATGATTTGAAGGTAGAACATAACTGA
Protein sequence

>MsG0680033083.01.T01

MGDLPGSFPDRRIHAAARKDLVARFRSMVEEGGTYQLENAIVRFNEGPYKVNSHKDKLSMMHNSTFTKVHSPAIPMNVFEFKPFNEILSSTVEKVSTDVIGHVIERGDIRETEKDGRKSRVIDLTLEDLENNHLHCSLWGAMGVANAFNGTKLILNGDLPEVAAYMTGSVLATIYEIETGVDWYFRSCTQCASLATIDNGVLRCRKCKTCKGAVPRFKLHVIVMDDTGSTTFVLFDRQVTQFIGRNVQDLINERDEGAVGNDYPADFNVLIDKQILFKVEVGEGNVVKKYQNYAVKKASDDVGVIEQFMFMYDLKVEHN*