Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0680033758.01.T01 | ABN06084.1 | 56.604 | 159 | 38 | 2 | 7 | 134 | 16 | 174 | 5.13E-49 | 181 |
| MsG0680033758.01.T01 | ABN06084.1 | 60.741 | 135 | 53 | 0 | 158 | 292 | 385 | 519 | 2.68E-39 | 155 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0680033758.01.T01 | P93295 | 39.56 | 91 | 54 | 1 | 4 | 93 | 35 | 125 | 3.73E-17 | 80.1 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0680033758.01.T01 | A2Q2E7 | 56.604 | 159 | 38 | 2 | 7 | 134 | 16 | 174 | 2.45e-49 | 181 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0180004847.01 | MsG0680033758.01 | 0.806298 | 8.803477e-50 | 4.761278e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0680033758.01.T01 | MTR_0093s0070 | 56.329 | 158 | 26 | 1 | 121 | 235 | 47 | 204 | 8.18e-52 | 169 |
| MsG0680033758.01.T01 | MTR_8g098925 | 85.106 | 94 | 14 | 0 | 158 | 251 | 69 | 162 | 8.76e-51 | 165 |
| MsG0680033758.01.T01 | MTR_7g451250 | 46.405 | 153 | 33 | 1 | 18 | 121 | 1 | 153 | 7.71e-39 | 135 |
| MsG0680033758.01.T01 | MTR_1g069475 | 35.897 | 234 | 129 | 5 | 5 | 235 | 30 | 245 | 1.56e-35 | 128 |
| MsG0680033758.01.T01 | MTR_6g089560 | 45.033 | 151 | 58 | 2 | 142 | 292 | 107 | 232 | 4.66e-35 | 127 |
| MsG0680033758.01.T01 | MTR_7g063280 | 37.195 | 164 | 87 | 2 | 97 | 256 | 23 | 174 | 2.83e-34 | 123 |
| MsG0680033758.01.T01 | MTR_4g094272 | 39.362 | 188 | 65 | 6 | 14 | 201 | 2 | 140 | 1.04e-33 | 120 |
| MsG0680033758.01.T01 | MTR_5g037920 | 52.893 | 121 | 55 | 2 | 158 | 277 | 102 | 221 | 4.65e-33 | 121 |
| MsG0680033758.01.T01 | MTR_0015s0120 | 35.745 | 235 | 107 | 8 | 32 | 227 | 137 | 366 | 3.04e-32 | 122 |
| MsG0680033758.01.T01 | MTR_2g088140 | 84.615 | 65 | 10 | 0 | 217 | 281 | 51 | 115 | 1.02e-30 | 112 |
| MsG0680033758.01.T01 | MTR_2g027020 | 43.885 | 139 | 66 | 4 | 158 | 291 | 30 | 161 | 1.58e-29 | 111 |
| MsG0680033758.01.T01 | MTR_1g046130 | 50.515 | 97 | 48 | 0 | 2 | 98 | 10 | 106 | 1.30e-28 | 113 |
| MsG0680033758.01.T01 | MTR_5g022720 | 70.270 | 74 | 22 | 0 | 201 | 274 | 1 | 74 | 1.82e-28 | 110 |
| MsG0680033758.01.T01 | MTR_5g065870 | 32.270 | 282 | 70 | 8 | 11 | 292 | 1 | 161 | 8.21e-28 | 105 |
| MsG0680033758.01.T01 | MTR_2g079840 | 44.853 | 136 | 53 | 3 | 25 | 160 | 1 | 114 | 9.11e-28 | 109 |
| MsG0680033758.01.T01 | MTR_7g013520 | 45.185 | 135 | 49 | 1 | 158 | 292 | 74 | 183 | 6.97e-27 | 103 |
| MsG0680033758.01.T01 | MTR_5g075610 | 48.000 | 100 | 50 | 1 | 160 | 259 | 1 | 98 | 7.02e-27 | 101 |
| MsG0680033758.01.T01 | MTR_1g088650 | 49.524 | 105 | 53 | 0 | 153 | 257 | 85 | 189 | 2.77e-26 | 102 |
| MsG0680033758.01.T01 | MTR_8g463110 | 78.333 | 60 | 13 | 0 | 39 | 98 | 594 | 653 | 4.39e-26 | 108 |
| MsG0680033758.01.T01 | MTR_8g006720 | 39.744 | 156 | 72 | 3 | 2 | 157 | 76 | 209 | 1.11e-25 | 103 |
| MsG0680033758.01.T01 | MTR_1g017840 | 59.740 | 77 | 31 | 0 | 158 | 234 | 82 | 158 | 1.66e-24 | 97.1 |
| MsG0680033758.01.T01 | MTR_4g064590 | 43.802 | 121 | 62 | 2 | 174 | 292 | 46 | 162 | 1.15e-23 | 94.7 |
| MsG0680033758.01.T01 | MTR_1g079820 | 31.285 | 179 | 101 | 4 | 44 | 219 | 48 | 207 | 1.72e-23 | 95.9 |
| MsG0680033758.01.T01 | MTR_6g034915 | 34.320 | 169 | 89 | 2 | 129 | 292 | 25 | 176 | 9.79e-23 | 92.8 |
| MsG0680033758.01.T01 | MTR_4g029360 | 52.747 | 91 | 43 | 0 | 164 | 254 | 137 | 227 | 1.04e-22 | 94.0 |
| MsG0680033758.01.T01 | MTR_2g055490 | 41.791 | 134 | 45 | 1 | 159 | 292 | 12 | 112 | 1.69e-22 | 90.1 |
| MsG0680033758.01.T01 | MTR_4g415270 | 64.516 | 62 | 22 | 0 | 37 | 98 | 1 | 62 | 1.02e-21 | 91.7 |
| MsG0680033758.01.T01 | MTR_8g059135 | 43.956 | 91 | 51 | 0 | 158 | 248 | 32 | 122 | 7.11e-21 | 86.3 |
| MsG0680033758.01.T01 | MTR_1g096730 | 51.282 | 78 | 38 | 0 | 10 | 87 | 40 | 117 | 2.04e-20 | 86.7 |
| MsG0680033758.01.T01 | MTR_5g083510 | 48.913 | 92 | 43 | 1 | 201 | 292 | 5 | 92 | 7.10e-20 | 82.8 |
| MsG0680033758.01.T01 | MTR_2g059470 | 46.154 | 78 | 42 | 0 | 158 | 235 | 4 | 81 | 2.54e-19 | 80.9 |
| MsG0680033758.01.T01 | MTR_4g008270 | 46.250 | 80 | 43 | 0 | 158 | 237 | 14 | 93 | 2.91e-19 | 81.3 |
| MsG0680033758.01.T01 | MTR_6g453270 | 43.956 | 91 | 48 | 1 | 142 | 232 | 291 | 378 | 2.49e-18 | 84.7 |
| MsG0680033758.01.T01 | MTR_0607s0040 | 37.168 | 113 | 48 | 1 | 25 | 114 | 1 | 113 | 5.00e-18 | 80.9 |
| MsG0680033758.01.T01 | MTR_6g016265 | 43.373 | 83 | 47 | 0 | 158 | 240 | 43 | 125 | 8.44e-18 | 78.2 |
| MsG0680033758.01.T01 | MTR_8g099580 | 42.553 | 94 | 51 | 1 | 142 | 235 | 197 | 287 | 7.69e-17 | 79.3 |
| MsG0680033758.01.T01 | MTR_7g446150 | 60.000 | 55 | 22 | 0 | 37 | 91 | 1 | 55 | 1.59e-16 | 74.7 |
| MsG0680033758.01.T01 | MTR_1g074240 | 46.970 | 66 | 35 | 0 | 158 | 223 | 4 | 69 | 4.93e-16 | 72.0 |
| MsG0680033758.01.T01 | MTR_1g034430 | 39.759 | 83 | 50 | 0 | 158 | 240 | 99 | 181 | 1.87e-15 | 73.2 |
| MsG0680033758.01.T01 | MTR_1g103580 | 48.000 | 75 | 39 | 0 | 217 | 291 | 171 | 245 | 2.03e-15 | 75.1 |
| MsG0680033758.01.T01 | MTR_3g116210 | 39.080 | 87 | 53 | 0 | 159 | 245 | 102 | 188 | 2.93e-15 | 72.8 |
| MsG0680033758.01.T01 | MTR_1g062840 | 44.000 | 75 | 42 | 0 | 175 | 249 | 1 | 75 | 6.64e-15 | 69.3 |
| MsG0680033758.01.T01 | MTR_6g060050 | 43.878 | 98 | 50 | 2 | 195 | 289 | 54 | 149 | 6.96e-15 | 70.9 |
| MsG0680033758.01.T01 | MTR_8g031080 | 36.496 | 137 | 61 | 3 | 153 | 289 | 288 | 398 | 9.06e-15 | 74.3 |
| MsG0680033758.01.T01 | MTR_1g045560 | 36.697 | 109 | 53 | 2 | 160 | 268 | 1 | 93 | 1.30e-14 | 68.6 |
| MsG0680033758.01.T01 | MTR_5g083200 | 39.080 | 87 | 53 | 0 | 164 | 250 | 108 | 194 | 3.10e-14 | 70.5 |
| MsG0680033758.01.T01 | MTR_0002s1220 | 39.080 | 87 | 53 | 0 | 164 | 250 | 108 | 194 | 3.10e-14 | 70.5 |
| MsG0680033758.01.T01 | MTR_5g085210 | 34.483 | 116 | 60 | 1 | 158 | 273 | 123 | 222 | 4.19e-14 | 70.5 |
| MsG0680033758.01.T01 | MTR_6g045427 | 55.357 | 56 | 25 | 0 | 186 | 241 | 177 | 232 | 4.96e-14 | 70.5 |
| MsG0680033758.01.T01 | MTR_5g069700 | 48.438 | 64 | 33 | 0 | 177 | 240 | 4 | 67 | 5.14e-14 | 66.6 |
| MsG0680033758.01.T01 | MTR_5g036320 | 47.692 | 65 | 34 | 0 | 153 | 217 | 78 | 142 | 8.17e-14 | 67.8 |
| MsG0680033758.01.T01 | MTR_3g111390 | 37.931 | 87 | 54 | 0 | 164 | 250 | 108 | 194 | 1.13e-13 | 68.6 |
| MsG0680033758.01.T01 | MTR_1g070820 | 37.931 | 87 | 54 | 0 | 164 | 250 | 108 | 194 | 1.13e-13 | 68.6 |
| MsG0680033758.01.T01 | MTR_1g045340 | 37.931 | 87 | 54 | 0 | 164 | 250 | 94 | 180 | 1.19e-13 | 68.2 |
| MsG0680033758.01.T01 | MTR_8g031800 | 40.789 | 76 | 45 | 0 | 154 | 229 | 31 | 106 | 1.31e-13 | 66.2 |
| MsG0680033758.01.T01 | MTR_8g036690 | 39.773 | 88 | 35 | 2 | 184 | 271 | 1 | 70 | 1.60e-13 | 65.1 |
| MsG0680033758.01.T01 | MTR_5g070140 | 35.165 | 91 | 40 | 2 | 8 | 98 | 1 | 72 | 1.81e-13 | 67.4 |
| MsG0680033758.01.T01 | MTR_7g053400 | 28.177 | 181 | 77 | 6 | 96 | 268 | 120 | 255 | 2.32e-13 | 68.9 |
| MsG0680033758.01.T01 | MTR_8g028785 | 43.038 | 79 | 45 | 0 | 183 | 261 | 287 | 365 | 2.45e-13 | 70.1 |
| MsG0680033758.01.T01 | MTR_1g074090 | 43.478 | 69 | 39 | 0 | 151 | 219 | 78 | 146 | 2.54e-13 | 66.6 |
| MsG0680033758.01.T01 | MTR_5g430460 | 28.736 | 174 | 76 | 4 | 60 | 185 | 76 | 249 | 3.64e-13 | 68.2 |
| MsG0680033758.01.T01 | MTR_5g034450 | 45.161 | 62 | 34 | 0 | 152 | 213 | 47 | 108 | 3.95e-13 | 65.1 |
| MsG0680033758.01.T01 | MTR_1g050488 | 45.161 | 62 | 34 | 0 | 159 | 220 | 103 | 164 | 3.95e-13 | 66.6 |
| MsG0680033758.01.T01 | MTR_6g033225 | 48.214 | 56 | 29 | 0 | 164 | 219 | 80 | 135 | 4.27e-13 | 65.9 |
| MsG0680033758.01.T01 | MTR_3g010950 | 32.143 | 140 | 65 | 2 | 153 | 292 | 25 | 134 | 6.19e-13 | 65.1 |
| MsG0680033758.01.T01 | MTR_5g049680 | 43.750 | 64 | 36 | 0 | 154 | 217 | 31 | 94 | 1.14e-12 | 63.5 |
| MsG0680033758.01.T01 | MTR_2g017550 | 58.824 | 51 | 21 | 0 | 157 | 207 | 111 | 161 | 1.16e-12 | 65.1 |
| MsG0680033758.01.T01 | MTR_1g022215 | 50.980 | 51 | 25 | 0 | 158 | 208 | 18 | 68 | 1.23e-12 | 63.2 |
| MsG0680033758.01.T01 | MTR_6g023630 | 59.259 | 54 | 20 | 2 | 168 | 220 | 3 | 55 | 1.26e-12 | 62.8 |
| MsG0680033758.01.T01 | MTR_6g016355 | 43.056 | 72 | 38 | 1 | 142 | 213 | 107 | 175 | 2.07e-12 | 64.7 |
| MsG0680033758.01.T01 | MTR_4g128080 | 47.692 | 65 | 34 | 0 | 205 | 269 | 5 | 69 | 2.47e-12 | 61.6 |
| MsG0680033758.01.T01 | MTR_2g011740 | 53.191 | 47 | 22 | 0 | 37 | 83 | 1 | 47 | 3.12e-12 | 62.4 |
| MsG0680033758.01.T01 | MTR_2g047100 | 39.583 | 96 | 43 | 1 | 158 | 253 | 22 | 102 | 3.72e-12 | 62.0 |
| MsG0680033758.01.T01 | MTR_8g088220 | 39.437 | 71 | 43 | 0 | 164 | 234 | 4 | 74 | 5.38e-12 | 60.8 |
| MsG0680033758.01.T01 | MTR_6g046670 | 65.306 | 49 | 17 | 0 | 159 | 207 | 128 | 176 | 1.64e-11 | 62.8 |
| MsG0680033758.01.T01 | MTR_8g028790 | 62.500 | 40 | 15 | 0 | 8 | 47 | 74 | 113 | 4.20e-11 | 59.3 |
| MsG0680033758.01.T01 | MTR_1g081930 | 35.632 | 87 | 56 | 0 | 159 | 245 | 43 | 129 | 4.76e-11 | 59.7 |
| MsG0680033758.01.T01 | MTR_8g022750 | 41.429 | 70 | 41 | 0 | 183 | 252 | 217 | 286 | 8.51e-11 | 62.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0680033758.01.T01 | AT4G29090 | 51.111 | 90 | 44 | 0 | 6 | 95 | 37 | 126 | 3.26e-25 | 105 |
Find 57 sgRNAs with CRISPR-Local
Find 131 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TAGTTACTTGACAGCAAATT+TGG | 0.171188 | 6:+72877665 | MsG0680033758.01.T01:CDS |
| TCCAATGGATACCCCGATTA+TGG | 0.189445 | 6:-72877479 | None:intergenic |
| ATCAATCTGACGATGGTTAA+AGG | 0.274109 | 6:-72878924 | None:intergenic |
| ATGTACACAATAATAAATAT+TGG | 0.298406 | 6:-72879089 | None:intergenic |
| GAGGCAGCTCACACCCTTAC+TGG | 0.303626 | 6:+72879043 | MsG0680033758.01.T01:CDS |
| TTTGGCGTGCAACCGGTCTT+TGG | 0.334816 | 6:+72878283 | MsG0680033758.01.T01:CDS |
| ACTCTAAGGTCGAGTTTAAC+AGG | 0.344267 | 6:+72879008 | MsG0680033758.01.T01:CDS |
| TGGTGAATGACAGGTTAATA+TGG | 0.348311 | 6:+72877971 | MsG0680033758.01.T01:intron |
| CAATTTGTAAGCACTCTTGA+TGG | 0.350614 | 6:-72878019 | None:intergenic |
| CACAAACTTCTCAAACTCTA+AGG | 0.397546 | 6:+72878994 | MsG0680033758.01.T01:CDS |
| CAAATTGTGTATGGAAGAAT+TGG | 0.398945 | 6:+72878035 | MsG0680033758.01.T01:CDS |
| GTGCAGGTTTGGCGTGCAAC+CGG | 0.399063 | 6:+72878276 | MsG0680033758.01.T01:intron |
| CCAATGGATACCCCGATTAT+GGG | 0.402952 | 6:-72877478 | None:intergenic |
| TGTACACAATAATAAATATT+GGG | 0.407662 | 6:-72879088 | None:intergenic |
| ATACTAGAGACAAGTGAATC+AGG | 0.414666 | 6:-72877615 | None:intergenic |
| CATCTCACTTAGCCATTGTA+AGG | 0.416334 | 6:-72878852 | None:intergenic |
| AGTTACTTGACAGCAAATTT+GGG | 0.432439 | 6:+72877666 | MsG0680033758.01.T01:CDS |
| CGCGCTTCATAGTACGCGGT+GGG | 0.433601 | 6:+72877727 | MsG0680033758.01.T01:CDS |
| TGCAACCGGTCTTTGGAATA+CGG | 0.441524 | 6:+72878290 | MsG0680033758.01.T01:CDS |
| GGGGTATCCATTGGATGTCT+TGG | 0.445454 | 6:+72877487 | MsG0680033758.01.T01:CDS |
| CCCATAATCGGGGTATCCAT+TGG | 0.451770 | 6:+72877478 | MsG0680033758.01.T01:CDS |
| TCTTTGGAATACGGTTCATA+AGG | 0.471021 | 6:+72878299 | MsG0680033758.01.T01:CDS |
| GGGTATCCATTGGATGTCTT+GGG | 0.477185 | 6:+72877488 | MsG0680033758.01.T01:CDS |
| GTCACAATCCTAGCTATGTA+TGG | 0.479119 | 6:+72877688 | MsG0680033758.01.T01:CDS |
| CACTTAGCCATTGTAAGGCA+TGG | 0.491027 | 6:-72878847 | None:intergenic |
| AGGCAGCTCACACCCTTACT+GGG | 0.493764 | 6:+72879044 | MsG0680033758.01.T01:CDS |
| CGCTTCATAGTACGCGGTGG+GGG | 0.494280 | 6:+72877729 | MsG0680033758.01.T01:CDS |
| GAGTGCTTACAAATTGTGTA+TGG | 0.495758 | 6:+72878026 | MsG0680033758.01.T01:CDS |
| TTGATGTAGCAATTCGAAGA+TGG | 0.502293 | 6:-72878352 | None:intergenic |
| ATATGGAAAGCTGAAAAGAA+TGG | 0.506334 | 6:+72877988 | MsG0680033758.01.T01:CDS |
| ATTTGCTGTCAAGTAACTAC+AGG | 0.511488 | 6:-72877661 | None:intergenic |
| ACTTGTCTCTAGTATTTACA+AGG | 0.523498 | 6:+72877623 | MsG0680033758.01.T01:CDS |
| CTATGTTAGGGAAACAAGGT+TGG | 0.525791 | 6:+72877577 | MsG0680033758.01.T01:CDS |
| ATAATGTGGCAACCCCAGTA+AGG | 0.531535 | 6:-72879057 | None:intergenic |
| CTGGCTATGTTAGGGAAACA+AGG | 0.541370 | 6:+72877573 | MsG0680033758.01.T01:CDS |
| TAACAGGAGACAAGCAAATG+AGG | 0.544050 | 6:+72879024 | MsG0680033758.01.T01:CDS |
| AGTTTGTGTTGAAGAGACTC+TGG | 0.545436 | 6:-72878979 | None:intergenic |
| CTTTGAATCCAATACCGCCA+TGG | 0.549566 | 6:-72877533 | None:intergenic |
| TGACAACGTCAATTTCATGT+TGG | 0.558815 | 6:+72878880 | MsG0680033758.01.T01:CDS |
| ATGAACCGTATTCCAAAGAC+CGG | 0.563965 | 6:-72878295 | None:intergenic |
| GCTTCTCCCAAGACATCCAA+TGG | 0.576760 | 6:-72877494 | None:intergenic |
| CCTATGTGTTCTGTTGTCGT+AGG | 0.583174 | 6:+72878806 | MsG0680033758.01.T01:CDS |
| TGACGAAGGAACATTTGTAC+TGG | 0.584544 | 6:+72878763 | MsG0680033758.01.T01:CDS |
| GCTTATTCCATGCCTTACAA+TGG | 0.586368 | 6:+72878840 | MsG0680033758.01.T01:CDS |
| GTTGTCGTAGGAGAAGCTCT+AGG | 0.593528 | 6:+72878818 | MsG0680033758.01.T01:CDS |
| TCTGGTATGCTGAAATCACT+TGG | 0.595135 | 6:-72878961 | None:intergenic |
| GCGCGCTTCATAGTACGCGG+TGG | 0.600850 | 6:+72877726 | MsG0680033758.01.T01:CDS |
| GCTTCATAGTACGCGGTGGG+GGG | 0.601929 | 6:+72877730 | MsG0680033758.01.T01:CDS |
| ATTGGGACTAGCTGATAATG+TGG | 0.608869 | 6:-72879071 | None:intergenic |
| GCGCTTCATAGTACGCGGTG+GGG | 0.613250 | 6:+72877728 | MsG0680033758.01.T01:CDS |
| TTGTAACATCAATCTGACGA+TGG | 0.624297 | 6:-72878931 | None:intergenic |
| TAATGTGGCAACCCCAGTAA+GGG | 0.630156 | 6:-72879056 | None:intergenic |
| GCTGTCAAGTAACTACAGGA+AGG | 0.646161 | 6:-72877657 | None:intergenic |
| CCTACGACAACAGAACACAT+AGG | 0.680243 | 6:-72878806 | None:intergenic |
| GGCAGCTCACACCCTTACTG+GGG | 0.699815 | 6:+72879045 | MsG0680033758.01.T01:CDS |
| AAGGCGCGCTTCATAGTACG+CGG | 0.700085 | 6:+72877723 | MsG0680033758.01.T01:CDS |
| ATATGTGTCTGTGATGACGA+AGG | 0.780956 | 6:+72878749 | MsG0680033758.01.T01:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATGTACACAATAATAAATAT+TGG | - | Chr6:72879092-72879111 | None:intergenic | 15.0% |
| !! | CAAAAATAAAGAATTTACTT+TGG | + | Chr6:72878121-72878140 | MsG0680033758.01.T01:intron | 15.0% |
| !! | TGTACACAATAATAAATATT+GGG | - | Chr6:72879091-72879110 | None:intergenic | 15.0% |
| !!! | CAAAGTAAATTCTTTATTTT+TGG | - | Chr6:72878123-72878142 | None:intergenic | 15.0% |
| !!! | AGTAAATTCTTTATTTTTGG+CGG | - | Chr6:72878120-72878139 | None:intergenic | 20.0% |
| ! | TATCTATACTTAATGAACCA+TGG | + | Chr6:72877773-72877792 | MsG0680033758.01.T01:intron | 25.0% |
| !!! | TAATGTTGATGCTTTGTTTT+CGG | + | Chr6:72878700-72878719 | MsG0680033758.01.T01:intron | 25.0% |
| !!! | TGTATGGAAAAGTATTTTGA+AGG | + | Chr6:72877704-72877723 | MsG0680033758.01.T01:CDS | 25.0% |
| AAATTTGATGAATTACCTCC+TGG | - | Chr6:72877900-72877919 | None:intergenic | 30.0% | |
| ACTTGTCTCTAGTATTTACA+AGG | + | Chr6:72877623-72877642 | MsG0680033758.01.T01:CDS | 30.0% | |
| AGTTACTTGACAGCAAATTT+GGG | + | Chr6:72877666-72877685 | MsG0680033758.01.T01:CDS | 30.0% | |
| ATATGGAAAGCTGAAAAGAA+TGG | + | Chr6:72877988-72878007 | MsG0680033758.01.T01:CDS | 30.0% | |
| CAAATTGTGTATGGAAGAAT+TGG | + | Chr6:72878035-72878054 | MsG0680033758.01.T01:CDS | 30.0% | |
| CATCAACATTACATTTCAGA+AGG | - | Chr6:72878691-72878710 | None:intergenic | 30.0% | |
| CGTATAGACAAACATATTGT+CGG | + | Chr6:72877811-72877830 | MsG0680033758.01.T01:intron | 30.0% | |
| GTATAGACAAACATATTGTC+GGG | + | Chr6:72877812-72877831 | MsG0680033758.01.T01:intron | 30.0% | |
| TAGTTACTTGACAGCAAATT+TGG | + | Chr6:72877665-72877684 | MsG0680033758.01.T01:CDS | 30.0% | |
| TATAGACAAACATATTGTCG+GGG | + | Chr6:72877813-72877832 | MsG0680033758.01.T01:intron | 30.0% | |
| TGAGATTTCTATGCTTCTAA+AGG | - | Chr6:72878422-72878441 | None:intergenic | 30.0% | |
| ! | AGCATAGAAATCTCAAGTTT+TGG | + | Chr6:72878427-72878446 | MsG0680033758.01.T01:intron | 30.0% |
| ! | ATACTTTTCCATACATAGCT+AGG | - | Chr6:72877699-72877718 | None:intergenic | 30.0% |
| ! | CTTTTAATCTGGCTATGTTA+GGG | + | Chr6:72877565-72877584 | MsG0680033758.01.T01:CDS | 30.0% |
| !! | AGATTTGACTGCTTTTAATC+TGG | + | Chr6:72877554-72877573 | MsG0680033758.01.T01:CDS | 30.0% |
| AATGAACCATGGTTGTTGAA+TGG | + | Chr6:72877784-72877803 | MsG0680033758.01.T01:intron | 35.0% | |
| ATAAGTTGTGTGAGTTGTGA+TGG | + | Chr6:72878207-72878226 | MsG0680033758.01.T01:intron | 35.0% | |
| ATACTAGAGACAAGTGAATC+AGG | - | Chr6:72877618-72877637 | None:intergenic | 35.0% | |
| ATCAATCTGACGATGGTTAA+AGG | - | Chr6:72878927-72878946 | None:intergenic | 35.0% | |
| ATCACAACTCACACAACTTA+TGG | - | Chr6:72878208-72878227 | None:intergenic | 35.0% | |
| ATTGTGTATGGAAGAATTGG+TGG | + | Chr6:72878038-72878057 | MsG0680033758.01.T01:intron | 35.0% | |
| CAATTTGTAAGCACTCTTGA+TGG | - | Chr6:72878022-72878041 | None:intergenic | 35.0% | |
| CACAAACTTCTCAAACTCTA+AGG | + | Chr6:72878994-72879013 | MsG0680033758.01.T01:CDS | 35.0% | |
| CCAATACCTGTTCTGTTTAA+TGG | - | Chr6:72878728-72878747 | None:intergenic | 35.0% | |
| CCATTAAACAGAACAGGTAT+TGG | + | Chr6:72878725-72878744 | MsG0680033758.01.T01:intron | 35.0% | |
| CTGTCAATGCATAAAAACCA+TGG | + | Chr6:72877516-72877535 | MsG0680033758.01.T01:CDS | 35.0% | |
| GAGTGCTTACAAATTGTGTA+TGG | + | Chr6:72878026-72878045 | MsG0680033758.01.T01:CDS | 35.0% | |
| TACAATGAGTGATATGGCTT+CGG | + | Chr6:72878644-72878663 | MsG0680033758.01.T01:intron | 35.0% | |
| TCAATGCATAAAAACCATGG+CGG | + | Chr6:72877519-72877538 | MsG0680033758.01.T01:CDS | 35.0% | |
| TCACAACTCACACAACTTAT+GGG | - | Chr6:72878207-72878226 | None:intergenic | 35.0% | |
| TGACAACGTCAATTTCATGT+TGG | + | Chr6:72878880-72878899 | MsG0680033758.01.T01:CDS | 35.0% | |
| TGGTGAATGACAGGTTAATA+TGG | + | Chr6:72877971-72877990 | MsG0680033758.01.T01:intron | 35.0% | |
| TTCTGCTACAATGAGTGATA+TGG | + | Chr6:72878638-72878657 | MsG0680033758.01.T01:intron | 35.0% | |
| TTGATGTAGCAATTCGAAGA+TGG | - | Chr6:72878355-72878374 | None:intergenic | 35.0% | |
| TTGTAACATCAATCTGACGA+TGG | - | Chr6:72878934-72878953 | None:intergenic | 35.0% | |
| TTTATCTTGAAGTCGAACTC+CGG | - | Chr6:72878172-72878191 | None:intergenic | 35.0% | |
| ! | GCTTTTAATCTGGCTATGTT+AGG | + | Chr6:72877564-72877583 | MsG0680033758.01.T01:CDS | 35.0% |
| !! | ATTTGCTGTCAAGTAACTAC+AGG | - | Chr6:72877664-72877683 | None:intergenic | 35.0% |
| !! | TCTTTGGAATACGGTTCATA+AGG | + | Chr6:72878299-72878318 | MsG0680033758.01.T01:CDS | 35.0% |
| ACAACACCGATAAGACAAAG+TGG | + | Chr6:72878594-72878613 | MsG0680033758.01.T01:intron | 40.0% | |
| AGTTTGTGTTGAAGAGACTC+TGG | - | Chr6:72878982-72879001 | None:intergenic | 40.0% | |
| ATATGAGCAAGATCCTCATG+TGG | - | Chr6:72878234-72878253 | None:intergenic | 40.0% | |
| ATGAACCGTATTCCAAAGAC+CGG | - | Chr6:72878298-72878317 | None:intergenic | 40.0% | |
| CAAATACCAGACCATTATCC+CGG | - | Chr6:72878084-72878103 | None:intergenic | 40.0% | |
| CATAAAAACCATGGCGGTAT+TGG | + | Chr6:72877525-72877544 | MsG0680033758.01.T01:CDS | 40.0% | |
| CATCTCACTTAGCCATTGTA+AGG | - | Chr6:72878855-72878874 | None:intergenic | 40.0% | |
| CCTGAACCACTTTGTCTTAT+CGG | - | Chr6:72878603-72878622 | None:intergenic | 40.0% | |
| CTATGTTAGGGAAACAAGGT+TGG | + | Chr6:72877577-72877596 | MsG0680033758.01.T01:CDS | 40.0% | |
| GCTTATTCCATGCCTTACAA+TGG | + | Chr6:72878840-72878859 | MsG0680033758.01.T01:CDS | 40.0% | |
| GGAGTTCGACTTCAAGATAA+AGG | + | Chr6:72878171-72878190 | MsG0680033758.01.T01:intron | 40.0% | |
| GTCACAATCCTAGCTATGTA+TGG | + | Chr6:72877688-72877707 | MsG0680033758.01.T01:CDS | 40.0% | |
| TAACAGGAGACAAGCAAATG+AGG | + | Chr6:72879024-72879043 | MsG0680033758.01.T01:CDS | 40.0% | |
| TATGAGCAAGATCCTCATGT+GGG | - | Chr6:72878233-72878252 | None:intergenic | 40.0% | |
| TCGGATCCATTAAACAGAAC+AGG | + | Chr6:72878719-72878738 | MsG0680033758.01.T01:intron | 40.0% | |
| TCTGGTATGCTGAAATCACT+TGG | - | Chr6:72878964-72878983 | None:intergenic | 40.0% | |
| TGACGAAGGAACATTTGTAC+TGG | + | Chr6:72878763-72878782 | MsG0680033758.01.T01:CDS | 40.0% | |
| TTCACCACCTGATCAAGTAA+CGG | - | Chr6:72877958-72877977 | None:intergenic | 40.0% | |
| ! | ATATGTGTCTGTGATGACGA+AGG | + | Chr6:72878749-72878768 | MsG0680033758.01.T01:CDS | 40.0% |
| ! | TATGCTTCTAAAGGCTCCAT+AGG | - | Chr6:72878413-72878432 | None:intergenic | 40.0% |
| !! | ACTCTAAGGTCGAGTTTAAC+AGG | + | Chr6:72879008-72879027 | MsG0680033758.01.T01:CDS | 40.0% |
| !! | ATTGGGACTAGCTGATAATG+TGG | - | Chr6:72879074-72879093 | None:intergenic | 40.0% |
| !! | TTGTCTTATCGGTGTTGTTG+TGG | - | Chr6:72878592-72878611 | None:intergenic | 40.0% |
| AACACCGTTACTTGATCAGG+TGG | + | Chr6:72877951-72877970 | MsG0680033758.01.T01:intron | 45.0% | |
| AACGATTTGCAGCTGTCCTA+TGG | + | Chr6:72878394-72878413 | MsG0680033758.01.T01:intron | 45.0% | |
| ATAATGTGGCAACCCCAGTA+AGG | - | Chr6:72879060-72879079 | None:intergenic | 45.0% | |
| CACTTAGCCATTGTAAGGCA+TGG | - | Chr6:72878850-72878869 | None:intergenic | 45.0% | |
| CCAATGGATACCCCGATTAT+GGG | - | Chr6:72877481-72877500 | None:intergenic | 45.0% | |
| CCGATAAGACAAAGTGGTTC+AGG | + | Chr6:72878600-72878619 | MsG0680033758.01.T01:intron | 45.0% | |
| CCTACGACAACAGAACACAT+AGG | - | Chr6:72878809-72878828 | None:intergenic | 45.0% | |
| CCTATGTGTTCTGTTGTCGT+AGG | + | Chr6:72878806-72878825 | MsG0680033758.01.T01:CDS | 45.0% | |
| CGATCGAGCTTGTCACATTA+TGG | + | Chr6:72878482-72878501 | MsG0680033758.01.T01:intron | 45.0% | |
| CGATCTCCATTCAACAACCA+TGG | - | Chr6:72877793-72877812 | None:intergenic | 45.0% | |
| CGGTGTTCGAAGAATAGAGT+CGG | - | Chr6:72877938-72877957 | None:intergenic | 45.0% | |
| CTAATGAGTACCTCGTCGAA+AGG | + | Chr6:72877868-72877887 | MsG0680033758.01.T01:intron | 45.0% | |
| CTGGCTATGTTAGGGAAACA+AGG | + | Chr6:72877573-72877592 | MsG0680033758.01.T01:CDS | 45.0% | |
| CTTTGAATCCAATACCGCCA+TGG | - | Chr6:72877536-72877555 | None:intergenic | 45.0% | |
| GCTGTCAAGTAACTACAGGA+AGG | - | Chr6:72877660-72877679 | None:intergenic | 45.0% | |
| GGGTATCCATTGGATGTCTT+GGG | + | Chr6:72877488-72877507 | MsG0680033758.01.T01:CDS | 45.0% | |
| TAATGTGGCAACCCCAGTAA+GGG | - | Chr6:72879059-72879078 | None:intergenic | 45.0% | |
| TACTTTGGCGAATGTGTCGT+GGG | + | Chr6:72878136-72878155 | MsG0680033758.01.T01:intron | 45.0% | |
| TCCAATGGATACCCCGATTA+TGG | - | Chr6:72877482-72877501 | None:intergenic | 45.0% | |
| TCGAACACCGTTACTTGATC+AGG | + | Chr6:72877948-72877967 | MsG0680033758.01.T01:intron | 45.0% | |
| TCGAGCTTGTCACATTATGG+AGG | + | Chr6:72878485-72878504 | MsG0680033758.01.T01:intron | 45.0% | |
| TGGATGTTTCTCACCTTCAG+AGG | + | Chr6:72878058-72878077 | MsG0680033758.01.T01:intron | 45.0% | |
| TTACTTTGGCGAATGTGTCG+TGG | + | Chr6:72878135-72878154 | MsG0680033758.01.T01:intron | 45.0% | |
| TTGATCAGGTGGTGAATGAC+AGG | + | Chr6:72877962-72877981 | MsG0680033758.01.T01:intron | 45.0% | |
| ! | CGAATGTCCTTTTACTGTGC+AGG | + | Chr6:72878260-72878279 | MsG0680033758.01.T01:intron | 45.0% |
| ! | GTCCTTTTACTGTGCAGGTT+TGG | + | Chr6:72878265-72878284 | MsG0680033758.01.T01:intron | 45.0% |
| !! | GTGTTGTTACGACTAGCTTC+TGG | - | Chr6:72878537-72878556 | None:intergenic | 45.0% |
| !! | TGCAACCGGTCTTTGGAATA+CGG | + | Chr6:72878290-72878309 | MsG0680033758.01.T01:CDS | 45.0% |
| CGCCAAACCTGCACAGTAAA+AGG | - | Chr6:72878270-72878289 | None:intergenic | 50.0% | |
| GCTTCTCCCAAGACATCCAA+TGG | - | Chr6:72877497-72877516 | None:intergenic | 50.0% | |
| GTTGTCGTAGGAGAAGCTCT+AGG | + | Chr6:72878818-72878837 | MsG0680033758.01.T01:CDS | 50.0% | |
| TGAGTGATATGGCTTCGGTC+AGG | + | Chr6:72878649-72878668 | MsG0680033758.01.T01:intron | 50.0% | |
| TGTCGTGGGTGCTTACATAC+CGG | + | Chr6:72878150-72878169 | MsG0680033758.01.T01:intron | 50.0% | |
| TGTTTCTCACCTTCAGAGGC+CGG | + | Chr6:72878062-72878081 | MsG0680033758.01.T01:intron | 50.0% | |
| ! | CCCATAATCGGGGTATCCAT+TGG | + | Chr6:72877478-72877497 | MsG0680033758.01.T01:CDS | 50.0% |
| ! | GGGGTATCCATTGGATGTCT+TGG | + | Chr6:72877487-72877506 | MsG0680033758.01.T01:CDS | 50.0% |
| AAGGCGCGCTTCATAGTACG+CGG | + | Chr6:72877723-72877742 | MsG0680033758.01.T01:CDS | 55.0% | |
| ACCATTATCCCGGCCTCTGA+AGG | - | Chr6:72878074-72878093 | None:intergenic | 55.0% | |
| ACCTTCAGAGGCCGGGATAA+TGG | + | Chr6:72878070-72878089 | MsG0680033758.01.T01:intron | 55.0% | |
| AGGCAGCTCACACCCTTACT+GGG | + | Chr6:72879044-72879063 | MsG0680033758.01.T01:CDS | 55.0% | |
| GAGTTGTGATGGCCCACATG+AGG | + | Chr6:72878218-72878237 | MsG0680033758.01.T01:intron | 55.0% | |
| GTGATATGGCTTCGGTCAGG+TGG | + | Chr6:72878652-72878671 | MsG0680033758.01.T01:intron | 55.0% | |
| GTTTCTCACCTTCAGAGGCC+GGG | + | Chr6:72878063-72878082 | MsG0680033758.01.T01:intron | 55.0% | |
| TGAGTACCTCGTCGAAAGGC+TGG | + | Chr6:72877872-72877891 | MsG0680033758.01.T01:intron | 55.0% | |
| TTTGGCGTGCAACCGGTCTT+TGG | + | Chr6:72878283-72878302 | MsG0680033758.01.T01:CDS | 55.0% | |
| CGCGCTTCATAGTACGCGGT+GGG | + | Chr6:72877727-72877746 | MsG0680033758.01.T01:CDS | 60.0% | |
| CGCTTCATAGTACGCGGTGG+GGG | + | Chr6:72877729-72877748 | MsG0680033758.01.T01:CDS | 60.0% | |
| GAGGCAGCTCACACCCTTAC+TGG | + | Chr6:72879043-72879062 | MsG0680033758.01.T01:CDS | 60.0% | |
| GCGCTTCATAGTACGCGGTG+GGG | + | Chr6:72877728-72877747 | MsG0680033758.01.T01:CDS | 60.0% | |
| GCTTCATAGTACGCGGTGGG+GGG | + | Chr6:72877730-72877749 | MsG0680033758.01.T01:CDS | 60.0% | |
| GGCAGCTCACACCCTTACTG+GGG | + | Chr6:72879045-72879064 | MsG0680033758.01.T01:CDS | 60.0% | |
| GTGCAGGTTTGGCGTGCAAC+CGG | + | Chr6:72878276-72878295 | MsG0680033758.01.T01:intron | 60.0% | |
| TGGCTTCGGTCAGGTGGCAA+CGG | + | Chr6:72878658-72878677 | MsG0680033758.01.T01:intron | 60.0% | |
| ! | CAGAGGCCGGGATAATGGTC+TGG | + | Chr6:72878075-72878094 | MsG0680033758.01.T01:intron | 60.0% |
| CTCGTCGAAAGGCTGGAGCC+AGG | + | Chr6:72877879-72877898 | MsG0680033758.01.T01:intron | 65.0% | |
| CTGGCTCCAGCCTTTCGACG+AGG | - | Chr6:72877881-72877900 | None:intergenic | 65.0% | |
| GCGCGCTTCATAGTACGCGG+TGG | + | Chr6:72877726-72877745 | MsG0680033758.01.T01:CDS | 65.0% | |
| GTCGAAAGGCTGGAGCCAGG+AGG | + | Chr6:72877882-72877901 | MsG0680033758.01.T01:intron | 65.0% | |
| GGTCAGGTGGCAACGGCACG+AGG | + | Chr6:72878665-72878684 | MsG0680033758.01.T01:intron | 70.0% | |
| ! | TAGTACGCGGTGGGGGGCGT+TGG | + | Chr6:72877736-72877755 | MsG0680033758.01.T01:CDS | 70.0% |
| !! | GCGGTGGGGGGCGTTGGTAC+TGG | + | Chr6:72877742-72877761 | MsG0680033758.01.T01:intron | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr6 | gene | 72877471 | 72879150 | 72877471 | ID=MsG0680033758.01;Name=MsG0680033758.01 |
| Chr6 | mRNA | 72877471 | 72879150 | 72877471 | ID=MsG0680033758.01.T01;Parent=MsG0680033758.01;Name=MsG0680033758.01.T01;_AED=0.40;_eAED=0.40;_QI=0|0|0|1|1|1|4|0|292 |
| Chr6 | exon | 72877471 | 72877757 | 72877471 | ID=MsG0680033758.01.T01:exon:3927;Parent=MsG0680033758.01.T01 |
| Chr6 | exon | 72877984 | 72878056 | 72877984 | ID=MsG0680033758.01.T01:exon:3926;Parent=MsG0680033758.01.T01 |
| Chr6 | exon | 72878282 | 72878390 | 72878282 | ID=MsG0680033758.01.T01:exon:3925;Parent=MsG0680033758.01.T01 |
| Chr6 | exon | 72878741 | 72879150 | 72878741 | ID=MsG0680033758.01.T01:exon:3924;Parent=MsG0680033758.01.T01 |
| Chr6 | CDS | 72877471 | 72877757 | 72877471 | ID=MsG0680033758.01.T01:cds;Parent=MsG0680033758.01.T01 |
| Chr6 | CDS | 72877984 | 72878056 | 72877984 | ID=MsG0680033758.01.T01:cds;Parent=MsG0680033758.01.T01 |
| Chr6 | CDS | 72878282 | 72878390 | 72878282 | ID=MsG0680033758.01.T01:cds;Parent=MsG0680033758.01.T01 |
| Chr6 | CDS | 72878741 | 72879150 | 72878741 | ID=MsG0680033758.01.T01:cds;Parent=MsG0680033758.01.T01 |
| Gene Sequence |
| Protein sequence |
