AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0680033907.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0680033907.01.T01 MTR_6g465150 96.119 438 7 1 1 428 1 438 0.0 860
MsG0680033907.01.T01 MTR_8g028700 50.621 322 145 4 113 420 194 515 2.80e-116 350
MsG0680033907.01.T01 MTR_8g032850 48.125 320 154 3 113 420 581 900 1.05e-107 338
MsG0680033907.01.T01 MTR_8g032850 41.429 210 104 5 115 307 233 440 4.52e-40 153
MsG0680033907.01.T01 MTR_2g101410 26.991 226 126 8 149 335 187 412 5.82e-11 64.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0680033907.01.T01 AT4G25440 62.212 434 138 4 1 420 3 424 0.0 568
MsG0680033907.01.T01 AT4G25440 62.212 434 138 4 1 420 3 424 0.0 568
MsG0680033907.01.T01 AT4G25440 62.212 434 138 4 1 420 3 424 0.0 568
MsG0680033907.01.T01 AT5G51980 60.491 448 140 7 1 424 1 435 0.0 560
MsG0680033907.01.T01 AT5G51980 60.491 448 140 7 1 424 1 435 0.0 560
MsG0680033907.01.T01 AT5G40880 49.057 318 150 3 111 416 119 436 6.62e-108 326
MsG0680033907.01.T01 AT5G40880 49.057 318 150 3 111 416 148 465 1.44e-107 326
MsG0680033907.01.T01 AT5G49200 47.022 319 154 4 113 416 94 412 8.00e-101 307
MsG0680033907.01.T01 AT1G24530 28.095 210 118 6 129 328 215 401 4.16e-11 65.1
MsG0680033907.01.T01 AT2G26060 24.784 347 183 16 118 421 41 352 5.28e-11 64.3

Find 153 sgRNAs with CRISPR-Local

Find 337 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTGAAAGAGTTTGTACTTAT+TGG 0.102120 6:+76012157 MsG0680033907.01.T01:CDS
TCTTCTTACCTTAACAAAAT+TGG 0.119333 6:-76013563 None:intergenic
CTCCAATTCAAACTCTAATT+AGG 0.122844 6:+76011587 MsG0680033907.01.T01:five_prime_UTR
CCACAAATTTCAATTCAATT+AGG 0.184198 6:+76011614 MsG0680033907.01.T01:five_prime_UTR
GCTTTCAATTTGAAGAAATT+AGG 0.189862 6:-76011712 None:intergenic
TCACCAATTTCAATTCAATT+AGG 0.213109 6:+76011641 MsG0680033907.01.T01:five_prime_UTR
CCCACTTTAGTGCACGTTAT+TGG 0.220045 6:-76015994 None:intergenic
GAGCCAGCTGCATCACTTAA+AGG 0.244802 6:+76014201 MsG0680033907.01.T01:CDS
CACAAATTTCAATTCAATTA+GGG 0.247518 6:+76011615 MsG0680033907.01.T01:five_prime_UTR
TGGTGATGTCTGTTCTTTGC+TGG 0.250109 6:+76014453 MsG0680033907.01.T01:CDS
TCCAATTCAAACTCTAATTA+GGG 0.265455 6:+76011588 MsG0680033907.01.T01:five_prime_UTR
AACCCTAATTGAATTGAAAT+TGG 0.267102 6:-76011644 None:intergenic
CACCAATTTCAATTCAATTA+GGG 0.278707 6:+76011642 MsG0680033907.01.T01:five_prime_UTR
AAACTGCTAAAACAATTAAT+TGG 0.289037 6:-76016035 None:intergenic
CTTTCAATTTGAAGAAATTA+GGG 0.291733 6:-76011711 None:intergenic
AGTGAATTGCCTACTTCTAA+TGG 0.301502 6:+76011964 MsG0680033907.01.T01:CDS
CTTGCAGGATGGAGCTATAT+TGG 0.302277 6:+76014146 MsG0680033907.01.T01:intron
CGGGGTGGTGTAGGTGGTGG+TGG 0.306577 6:+76012111 MsG0680033907.01.T01:CDS
ATATAACATCAAATAATTTC+AGG 0.312844 6:+76016435 MsG0680033907.01.T01:three_prime_UTR
CTTCTTACCTTAACAAAATT+GGG 0.313002 6:-76013562 None:intergenic
TTATTGGATGTGGCCGGTTC+AGG 0.316183 6:-76015978 None:intergenic
CGGGCTTATGCTGATAATTC+GGG 0.320112 6:+76012006 MsG0680033907.01.T01:CDS
ACGGGCTTATGCTGATAATT+CGG 0.326315 6:+76012005 MsG0680033907.01.T01:CDS
GGAGCTAATAGACTTTATTC+TGG 0.326721 6:+76014255 MsG0680033907.01.T01:CDS
GAATATGTAATCTATGTTTA+CGG 0.345237 6:+76016272 MsG0680033907.01.T01:three_prime_UTR
TCCAATAACGTGCACTAAAG+TGG 0.346128 6:+76015993 MsG0680033907.01.T01:exon
TGTCTAATGAACAAGATATA+AGG 0.355225 6:-76014484 None:intergenic
GCTGTACGCTGCAGAGGATC+CGG 0.362045 6:+76016235 MsG0680033907.01.T01:three_prime_UTR
ACCCTAATTAGAGTTTGAAT+TGG 0.364058 6:-76011589 None:intergenic
GTTGCAAGAGCATAGAAGTA+TGG 0.364087 6:-76015263 None:intergenic
CCTAATTGAATTGAAATTTG+TGG 0.366189 6:-76011614 None:intergenic
CACTCTTGGAATGTTGGTGA+TGG 0.368628 6:+76012222 MsG0680033907.01.T01:CDS
CCGGGGAGAAGTGGCGGACG+TGG 0.376025 6:+76012075 MsG0680033907.01.T01:CDS
TAGGGCTTGAGAAGTTGAAT+TGG 0.377061 6:-76011693 None:intergenic
TCAGCATAAGCCCGTTTAGA+AGG 0.378915 6:-76011997 None:intergenic
AGGGAATTCAGTGTGAAGTA+TGG 0.381919 6:+76016092 MsG0680033907.01.T01:three_prime_UTR
GGTTCGGATAAGCTTTATAC+TGG 0.382445 6:+76013250 MsG0680033907.01.T01:CDS
GGTGTAAGTTTCTTCACTCT+TGG 0.386356 6:+76012208 MsG0680033907.01.T01:CDS
TAGACTTTATTCTGGTTCAA+TGG 0.390656 6:+76014263 MsG0680033907.01.T01:CDS
AATATTATAATTAGCATGCC+TGG 0.391192 6:-76016341 None:intergenic
GCCAAGTGAGAGTGTGGAAT+TGG 0.392307 6:+76015952 MsG0680033907.01.T01:CDS
TCAAATAATTTCAGGTTACT+TGG 0.394531 6:+76016443 MsG0680033907.01.T01:three_prime_UTR
CTTCAAATTGGAATCTGAAT+CGG 0.398719 6:-76011764 None:intergenic
TAAATCTCGGCCGCAGAACT+TGG 0.399435 6:-76016203 None:intergenic
GGTGGTGTAGGTGGTGGTGG+TGG 0.401605 6:+76012114 MsG0680033907.01.T01:CDS
GGCGGACGTGGTCGCGGTGG+GGG 0.407365 6:+76012087 MsG0680033907.01.T01:CDS
TCTGCAGCCATTCATGCATT+AGG 0.407699 6:+76016174 MsG0680033907.01.T01:three_prime_UTR
GGACGGGGTGGTGTAGGTGG+TGG 0.411022 6:+76012108 MsG0680033907.01.T01:CDS
TGCTACGGAAAGTGGAAATC+TGG 0.412766 6:+76014604 MsG0680033907.01.T01:CDS
GTGGCGGACGTGGTCGCGGT+GGG 0.414195 6:+76012085 MsG0680033907.01.T01:CDS
GTAAACACTGCAAGGTTTCA+AGG 0.414343 6:-76014406 None:intergenic
ATTAATGATATGCTCTTTGC+TGG 0.418363 6:+76013795 MsG0680033907.01.T01:CDS
ATTCAAGGGAATTGTAGTTA+TGG 0.419571 6:+76012180 MsG0680033907.01.T01:CDS
AATATGTAATCTATGTTTAC+GGG 0.421532 6:+76016273 MsG0680033907.01.T01:three_prime_UTR
TCTTTGTTGACTCAGCTTGA+AGG 0.427109 6:+76012249 MsG0680033907.01.T01:CDS
GGAATTGTAGTTATGGAGAT+AGG 0.434741 6:+76012187 MsG0680033907.01.T01:CDS
GGTGATGTCTGTTCTTTGCT+GGG 0.435801 6:+76014454 MsG0680033907.01.T01:CDS
TTCTTCACTGGTGATGGAAC+CGG 0.439518 6:+76015930 MsG0680033907.01.T01:CDS
TTTCTTCACTCTTGGAATGT+TGG 0.440764 6:+76012216 MsG0680033907.01.T01:CDS
GTGAATTGCCTACTTCTAAT+GGG 0.444534 6:+76011965 MsG0680033907.01.T01:CDS
AGGTAAGATATTCAACAAAC+AGG 0.445583 6:+76015872 MsG0680033907.01.T01:CDS
AATTGCTATGCCCTCTGGTT+CGG 0.446239 6:+76013234 MsG0680033907.01.T01:CDS
TAGGGTATAATCACCCTTTG+TGG 0.446419 6:+76015217 MsG0680033907.01.T01:intron
GGAATGGTGCTCCTTCTAAA+CGG 0.446924 6:+76011986 MsG0680033907.01.T01:CDS
GGCAATTCACTATGCAGAAA+AGG 0.455554 6:-76011952 None:intergenic
GTTTGTACTTATTGGATTCA+AGG 0.456346 6:+76012165 MsG0680033907.01.T01:CDS
AGAAGTGGCGGACGTGGTCG+CGG 0.458634 6:+76012081 MsG0680033907.01.T01:CDS
ATAAATGCTAGGAGGGATCC+TGG 0.459670 6:+76016130 MsG0680033907.01.T01:three_prime_UTR
TTCATTAGACAAAACAGTAA+AGG 0.464680 6:+76014496 MsG0680033907.01.T01:CDS
CGTGTTTACAATCGTCTTGG+TGG 0.467498 6:+76011853 MsG0680033907.01.T01:CDS
TCAATGGAGATAAGTCTAGA+TGG 0.468495 6:+76013741 MsG0680033907.01.T01:CDS
TTAGTGCACGTTATTGGATG+TGG 0.476010 6:-76015988 None:intergenic
TTGAATGAACAGGTTGTAAG+TGG 0.476227 6:+76013211 MsG0680033907.01.T01:intron
GAATGGTGCTCCTTCTAAAC+GGG 0.477698 6:+76011987 MsG0680033907.01.T01:CDS
TGTATAGCTGTGATCAATCT+TGG 0.477996 6:+76013487 MsG0680033907.01.T01:CDS
ACTCTTGGAATGTTGGTGAT+GGG 0.480654 6:+76012223 MsG0680033907.01.T01:CDS
AGTGGAATTGCTATGCCCTC+TGG 0.484501 6:+76013229 MsG0680033907.01.T01:CDS
CGGCCGAGATTTAACTGAGC+AGG 0.488453 6:+76016213 MsG0680033907.01.T01:three_prime_UTR
TTTGTACTTATTGGATTCAA+GGG 0.491174 6:+76012166 MsG0680033907.01.T01:CDS
AGCATATTCTTCACTGGTGA+TGG 0.496351 6:+76015924 MsG0680033907.01.T01:CDS
GGTGTTGTTTCGTTAGTTGT+TGG 0.496526 6:+76014234 MsG0680033907.01.T01:CDS
CGAGCAATTCAGACTGGTCC+TGG 0.502735 6:+76015900 MsG0680033907.01.T01:CDS
AGTGGCGGACGTGGTCGCGG+TGG 0.507974 6:+76012084 MsG0680033907.01.T01:CDS
TGGACGGCTGAAGAGAATCC+AGG 0.510666 6:-76016148 None:intergenic
ATTCCACACTCTCACTTGGC+CGG 0.510834 6:-76015949 None:intergenic
CCTGGTAGCATATTCTTCAC+TGG 0.512028 6:+76015918 MsG0680033907.01.T01:CDS
GTGTGGTATGCTACGGAAAG+TGG 0.514044 6:+76014596 MsG0680033907.01.T01:CDS
TGCATCATGCATCCCACAAA+GGG 0.514045 6:-76015230 None:intergenic
AGGGTATAATCACCCTTTGT+GGG 0.517484 6:+76015218 MsG0680033907.01.T01:intron
CTGTACGCTGCAGAGGATCC+GGG 0.518751 6:+76016236 MsG0680033907.01.T01:three_prime_UTR
GATTGCACCTAATGCATGAA+TGG 0.520684 6:-76016181 None:intergenic
GAGGAGAATAAATGCTAGGA+GGG 0.523492 6:+76016123 MsG0680033907.01.T01:three_prime_UTR
TGGCGGACGTGGTCGCGGTG+GGG 0.526609 6:+76012086 MsG0680033907.01.T01:CDS
GTATGATCAGTGAAGGTCCC+TGG 0.528209 6:+76013524 MsG0680033907.01.T01:CDS
TCCAATTCCACACTCTCACT+TGG 0.529171 6:-76015953 None:intergenic
AAGCGTGTTTACAATCGTCT+TGG 0.534374 6:+76011850 MsG0680033907.01.T01:CDS
ATATCTATATACGCATGAAA+AGG 0.534720 6:-76016412 None:intergenic
AGTGCATAAACTTGTCCGAC+AGG 0.541835 6:-76013765 None:intergenic
TTGGAACACGCAAAATTCAA+TGG 0.543770 6:+76013725 MsG0680033907.01.T01:CDS
TTTGTTTCTATGGATTTCGA+CGG 0.545744 6:+76011820 MsG0680033907.01.T01:exon
GTGGAATTGGATACCTGAAC+CGG 0.547100 6:+76015965 MsG0680033907.01.T01:CDS
TGCACGTTATTGGATGTGGC+CGG 0.547273 6:-76015984 None:intergenic
GCATGAATGGCTGCAGAGGA+TGG 0.548744 6:-76016168 None:intergenic
ATTCTTTGAATCACCACCGT+TGG 0.549048 6:-76011878 None:intergenic
TCAGCTTGAAGGACATAAGA+AGG 0.550026 6:+76012260 MsG0680033907.01.T01:CDS
ACTGACAGAGCACACGGCTG+TGG 0.553338 6:+76014433 MsG0680033907.01.T01:CDS
AATCGTCTTGGTGGGTCCAA+CGG 0.554468 6:+76011862 MsG0680033907.01.T01:CDS
ATATTATAATTAGCATGCCT+GGG 0.558329 6:-76016340 None:intergenic
TATGCTCTTTGCTGGTACGC+AGG 0.562187 6:+76013803 MsG0680033907.01.T01:CDS
GGATCCGGGCCAGAACGAAA+AGG 0.563439 6:+76016250 MsG0680033907.01.T01:three_prime_UTR
TTGCAAGAGCATAGAAGTAT+GGG 0.564028 6:-76015262 None:intergenic
CCAATAACGTGCACTAAAGT+GGG 0.567143 6:+76015994 MsG0680033907.01.T01:exon
GCACCATTCCCATTAGAAGT+AGG 0.568465 6:-76011973 None:intergenic
GTGTTTACAATCGTCTTGGT+GGG 0.570120 6:+76011854 MsG0680033907.01.T01:CDS
TTGTTCAGATTTGCAGAGAG+AGG 0.570280 6:+76015852 MsG0680033907.01.T01:intron
GTTTCTATGGATTTCGACGG+TGG 0.572025 6:+76011823 MsG0680033907.01.T01:exon
CCACGTCCGCCACTTCTCCC+CGG 0.573971 6:-76012075 None:intergenic
AACTAACGAAACAACACCAC+GGG 0.575189 6:-76014229 None:intergenic
ATCAATCTTGGCGGTGAAGT+AGG 0.580144 6:+76013499 MsG0680033907.01.T01:CDS
TATGCAGGTGTGGTATGCTA+CGG 0.582090 6:+76014589 MsG0680033907.01.T01:intron
ATAAAGCTTATCCGAACCAG+AGG 0.585965 6:-76013245 None:intergenic
CAGAGAGGAGAATAAATGCT+AGG 0.587050 6:+76016119 MsG0680033907.01.T01:three_prime_UTR
TTGCCTACTTCTAATGGGAA+TGG 0.590538 6:+76011970 MsG0680033907.01.T01:CDS
CAGTGTCTGTAAACACTGCA+AGG 0.596655 6:-76014414 None:intergenic
TGCAGCTGGCTCGAAACAGT+TGG 0.597581 6:-76014190 None:intergenic
CAGCCTGCTCAGTTAAATCT+CGG 0.598274 6:-76016216 None:intergenic
TGACCTTTAAGTGATGCAGC+TGG 0.606030 6:-76014204 None:intergenic
GAGCAGGCTGTACGCTGCAG+AGG 0.610543 6:+76016229 MsG0680033907.01.T01:three_prime_UTR
GAACCGGCCAAGTGAGAGTG+TGG 0.613681 6:+76015946 MsG0680033907.01.T01:CDS
CCAGTGAAGAATATGCTACC+AGG 0.618179 6:-76015918 None:intergenic
AGGATGGAGCTATATTGGTA+TGG 0.618970 6:+76014151 MsG0680033907.01.T01:intron
TCACTATGCAGAAAAGGACA+TGG 0.619738 6:-76011946 None:intergenic
CGTCTTGGTGGGTCCAACGG+TGG 0.620014 6:+76011865 MsG0680033907.01.T01:CDS
GAATGGCTGCAGAGGATGGA+CGG 0.625373 6:-76016164 None:intergenic
GTGCATCATGCATCCCACAA+AGG 0.625754 6:-76015231 None:intergenic
AGAGGAGAATAAATGCTAGG+AGG 0.628296 6:+76016122 MsG0680033907.01.T01:three_prime_UTR
ATAAGTCTAGATGGCCCTGT+CGG 0.630869 6:+76013750 MsG0680033907.01.T01:CDS
GTAGGTTGTATGATCAGTGA+AGG 0.632803 6:+76013517 MsG0680033907.01.T01:CDS
TAATGCATGAATGGCTGCAG+AGG 0.635890 6:-76016172 None:intergenic
GAGGTGCGAGCAATTCAGAC+TGG 0.636091 6:+76015894 MsG0680033907.01.T01:CDS
CTTACGATGGCAGATCATAG+AGG 0.639029 6:-76015300 None:intergenic
GGGCTTATGCTGATAATTCG+GGG 0.639405 6:+76012007 MsG0680033907.01.T01:CDS
GTGCATAAACTTGTCCGACA+GGG 0.646937 6:-76013764 None:intergenic
ATAGCTGTGATCAATCTTGG+CGG 0.647484 6:+76013490 MsG0680033907.01.T01:CDS
ACAGACACTGACAGAGCACA+CGG 0.654604 6:+76014427 MsG0680033907.01.T01:CDS
GTGAAGTATGGATTGCAGAG+AGG 0.660692 6:+76016104 MsG0680033907.01.T01:three_prime_UTR
TAAGATATTCAACAAACAGG+AGG 0.665359 6:+76015875 MsG0680033907.01.T01:CDS
TCACTTAAAGGTCATACCCG+TGG 0.682929 6:+76014213 MsG0680033907.01.T01:CDS
TGTGGGATGCATGATGCACA+AGG 0.684145 6:+76015235 MsG0680033907.01.T01:CDS
TAAAGCTTATCCGAACCAGA+GGG 0.687572 6:-76013244 None:intergenic
ATAACGTGCACTAAAGTGGG+AGG 0.693100 6:+76015997 MsG0680033907.01.T01:exon
TAGGTGCAATCCAAGTTCTG+CGG 0.693548 6:+76016193 MsG0680033907.01.T01:three_prime_UTR
CAACTAACGAAACAACACCA+CGG 0.703335 6:-76014230 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATATTTATAATTTTGAATTC+TGG + Chr6:76012434-76012453 MsG0680033907.01.T01:intron 10.0%
!!! GAAGATTATTATTTTTAAAT+AGG + Chr6:76014900-76014919 MsG0680033907.01.T01:intron 10.0%
!!! TTTAAGTTATTAATATACTA+TGG + Chr6:76012783-76012802 MsG0680033907.01.T01:intron 10.0%
!! ATATAACATCAAATAATTTC+AGG + Chr6:76016435-76016454 MsG0680033907.01.T01:three_prime_UTR 15.0%
!! TGTAAAAATAAAAATCTTTC+TGG - Chr6:76015080-76015099 None:intergenic 15.0%
!!! AATATTCTTTTTAAGCAAAA+TGG + Chr6:76014331-76014350 MsG0680033907.01.T01:intron 15.0%
!!! CTTATATATAACTATACTTT+TGG + Chr6:76012623-76012642 MsG0680033907.01.T01:intron 15.0%
!!! GTATTGTCTTTTTTTTAATA+TGG + Chr6:76015025-76015044 MsG0680033907.01.T01:intron 15.0%
!! AAACTGCTAAAACAATTAAT+TGG - Chr6:76016038-76016057 None:intergenic 20.0%
!! AAAGTTATTCATGGAAAAAA+TGG + Chr6:76015421-76015440 MsG0680033907.01.T01:intron 20.0%
!! AAATCATAACAATCAAAACA+AGG - Chr6:76014570-76014589 None:intergenic 20.0%
!! AATATGTAATCTATGTTTAC+GGG + Chr6:76016273-76016292 MsG0680033907.01.T01:three_prime_UTR 20.0%
!! AATCATAACAATCAAAACAA+GGG - Chr6:76014569-76014588 None:intergenic 20.0%
!! ATAAAAAAATACGTTGACAA+TGG - Chr6:76013843-76013862 None:intergenic 20.0%
!! ATATTAAGCATTAAGCATAT+AGG - Chr6:76013079-76013098 None:intergenic 20.0%
!! CACAAATTTCAATTCAATTA+GGG + Chr6:76011615-76011634 MsG0680033907.01.T01:five_prime_UTR 20.0%
!! CTTCAACTCTAATTTATTTA+AGG + Chr6:76013620-76013639 MsG0680033907.01.T01:intron 20.0%
!! CTTTCAATTTGAAGAAATTA+GGG - Chr6:76011714-76011733 None:intergenic 20.0%
!! GAAATAACAACATTTCTAAT+GGG - Chr6:76014723-76014742 None:intergenic 20.0%
!! GAATATGTAATCTATGTTTA+CGG + Chr6:76016272-76016291 MsG0680033907.01.T01:three_prime_UTR 20.0%
!! TATAAGCATATAAGTACATT+TGG - Chr6:76012609-76012628 None:intergenic 20.0%
!! TATTAAGCATTAAGCATATA+GGG - Chr6:76013078-76013097 None:intergenic 20.0%
!! TGAAATAACAACATTTCTAA+TGG - Chr6:76014724-76014743 None:intergenic 20.0%
!! TTGCAGAAAAAATTACAAAA+AGG - Chr6:76016070-76016089 None:intergenic 20.0%
!! TTGTTACAATTTCTTTCTAT+TGG + Chr6:76013320-76013339 MsG0680033907.01.T01:intron 20.0%
!! TTTATATACCTATTTCAATG+CGG + Chr6:76013882-76013901 MsG0680033907.01.T01:intron 20.0%
!!! AAAAACTTAGTTGATAAAAC+AGG - Chr6:76015760-76015779 None:intergenic 20.0%
!!! AAATTTTCAAACATCTCATA+AGG - Chr6:76014965-76014984 None:intergenic 20.0%
!!! AAGAAAAAATCGAATTTTTG+AGG + Chr6:76011784-76011803 MsG0680033907.01.T01:five_prime_UTR 20.0%
!!! AATTTTCAAACATCTCATAA+GGG - Chr6:76014964-76014983 None:intergenic 20.0%
!!! AGAAAAAATCGAATTTTTGA+GGG + Chr6:76011785-76011804 MsG0680033907.01.T01:five_prime_UTR 20.0%
!!! ATTCGATTTTTTCTTCAAAT+TGG - Chr6:76011779-76011798 None:intergenic 20.0%
!!! GTTGTTATTTCATGATTTTA+GGG + Chr6:76014732-76014751 MsG0680033907.01.T01:intron 20.0%
!!! TAAGCTTTTTTTATAGCAAA+AGG + Chr6:76012874-76012893 MsG0680033907.01.T01:intron 20.0%
!!! TGTTGTTATTTCATGATTTT+AGG + Chr6:76014731-76014750 MsG0680033907.01.T01:intron 20.0%
!!! TTTAATGGAAATTTTATACG+TGG - Chr6:76014766-76014785 None:intergenic 20.0%
! AAAGCTTCATCTCAAAAATT+AGG + Chr6:76011546-76011565 MsG0680033907.01.T01:five_prime_UTR 25.0%
! AACCCTAATTGAATTGAAAT+TGG - Chr6:76011620-76011639 None:intergenic 25.0%
! AAGCTTCATCTCAAAAATTA+GGG + Chr6:76011547-76011566 MsG0680033907.01.T01:five_prime_UTR 25.0%
! AAGTAATGATGAAACTGTAA+GGG + Chr6:76013273-76013292 MsG0680033907.01.T01:intron 25.0%
! AATAAGTTGTTTATCCAAAC+AGG - Chr6:76012810-76012829 None:intergenic 25.0%
! AATATTATAATTAGCATGCC+TGG - Chr6:76016344-76016363 None:intergenic 25.0%
! AATTATTTGAGCTTATCTAC+TGG - Chr6:76013042-76013061 None:intergenic 25.0%
! ATAAGTTGTTTATCCAAACA+GGG - Chr6:76012809-76012828 None:intergenic 25.0%
! ATATCTATATACGCATGAAA+AGG - Chr6:76016415-76016434 None:intergenic 25.0%
! ATATTATAATTAGCATGCCT+GGG - Chr6:76016343-76016362 None:intergenic 25.0%
! ATCATAACAATCAAAACAAG+GGG - Chr6:76014568-76014587 None:intergenic 25.0%
! ATTAAGCATTAAGCATATAG+GGG - Chr6:76013077-76013096 None:intergenic 25.0%
! CACCAATTTCAATTCAATTA+GGG + Chr6:76011642-76011661 MsG0680033907.01.T01:five_prime_UTR 25.0%
! CCACAAATTTCAATTCAATT+AGG + Chr6:76011614-76011633 MsG0680033907.01.T01:five_prime_UTR 25.0%
! CCTAATTGAATTGAAATTTG+TGG - Chr6:76011617-76011636 None:intergenic 25.0%
! CTTCTTACCTTAACAAAATT+GGG - Chr6:76013565-76013584 None:intergenic 25.0%
! GAAATAGAAAACAGATAGAA+AGG - Chr6:76013369-76013388 None:intergenic 25.0%
! GCTTTCAATTTGAAGAAATT+AGG - Chr6:76011715-76011734 None:intergenic 25.0%
! GTTCTTTAATAGAAGCAATA+GGG + Chr6:76015620-76015639 MsG0680033907.01.T01:intron 25.0%
! TAGCAATTCTATAACATATC+CGG - Chr6:76012477-76012496 None:intergenic 25.0%
! TATATTTCCTAAGATCCTAA+AGG - Chr6:76014041-76014060 None:intergenic 25.0%
! TCAATTGTCAAATGTTAAAG+AGG + Chr6:76012689-76012708 MsG0680033907.01.T01:intron 25.0%
! TCACCAATTTCAATTCAATT+AGG + Chr6:76011641-76011660 MsG0680033907.01.T01:five_prime_UTR 25.0%
! TCATACACGTAATTAATTTC+CGG - Chr6:76013147-76013166 None:intergenic 25.0%
! TCCAATTCAAACTCTAATTA+GGG + Chr6:76011588-76011607 MsG0680033907.01.T01:five_prime_UTR 25.0%
! TCTTCTTACCTTAACAAAAT+TGG - Chr6:76013566-76013585 None:intergenic 25.0%
! TGTCTAATGAACAAGATATA+AGG - Chr6:76014487-76014506 None:intergenic 25.0%
! TGTTCTTTAATAGAAGCAAT+AGG + Chr6:76015619-76015638 MsG0680033907.01.T01:intron 25.0%
! TTACTGTACAAAGTTATTCA+TGG + Chr6:76015412-76015431 MsG0680033907.01.T01:intron 25.0%
! TTCATTAGACAAAACAGTAA+AGG + Chr6:76014496-76014515 MsG0680033907.01.T01:CDS 25.0%
! TTCTACACAAAATGTTGTAT+TGG + Chr6:76015137-76015156 MsG0680033907.01.T01:intron 25.0%
! TTGAAAGAGTTTGTACTTAT+TGG + Chr6:76012157-76012176 MsG0680033907.01.T01:CDS 25.0%
! TTGATTGTTATGATTTATGC+AGG + Chr6:76014574-76014593 MsG0680033907.01.T01:intron 25.0%
! TTTGTACTTATTGGATTCAA+GGG + Chr6:76012166-76012185 MsG0680033907.01.T01:CDS 25.0%
!! AATTTATTTATGTTTTCCCC+TGG + Chr6:76014665-76014684 MsG0680033907.01.T01:intron 25.0%
!! ATTTTCAAACATCTCATAAG+GGG - Chr6:76014963-76014982 None:intergenic 25.0%
!! TGAAGTCATTCTTAACTTTT+TGG + Chr6:76015821-76015840 MsG0680033907.01.T01:intron 25.0%
!! TTTTGTATACAAATCAAGCT+TGG + Chr6:76015388-76015407 MsG0680033907.01.T01:intron 25.0%
!!! AACACAACAATTTAGTTCTT+TGG - Chr6:76013451-76013470 None:intergenic 25.0%
!!! AAGTCGATTTTTTGTTTCTA+TGG + Chr6:76011810-76011829 MsG0680033907.01.T01:exon 25.0%
!!! AATCTTGATAGTGAAATCTA+TGG + Chr6:76012330-76012349 MsG0680033907.01.T01:intron 25.0%
!!! ACTTTTGGTTATGTTTTGAA+TGG + Chr6:76012638-76012657 MsG0680033907.01.T01:intron 25.0%
!!! CTGGTTTTTAGATCATTTAA+TGG - Chr6:76014781-76014800 None:intergenic 25.0%
!!! GTTTGTTTTTCATTATTTGC+AGG + Chr6:76014518-76014537 MsG0680033907.01.T01:intron 25.0%
!!! TCAAATAATTTCAGGTTACT+TGG + Chr6:76016443-76016462 MsG0680033907.01.T01:three_prime_UTR 25.0%
!!! TGTAATTTTTTCTGCAAGAA+GGG + Chr6:76016073-76016092 MsG0680033907.01.T01:three_prime_UTR 25.0%
!!! TGTATTGGTATTTGTTATAG+TGG + Chr6:76015152-76015171 MsG0680033907.01.T01:intron 25.0%
!!! TTGTAATTTTTTCTGCAAGA+AGG + Chr6:76016072-76016091 MsG0680033907.01.T01:three_prime_UTR 25.0%
!!! TTTTGAATTCTGGTTTTGAA+TGG + Chr6:76012444-76012463 MsG0680033907.01.T01:intron 25.0%
!!! TTTTTAAGCAAAATGGAACT+AGG + Chr6:76014338-76014357 MsG0680033907.01.T01:intron 25.0%
AAACTATGGTTTATGCCTTT+AGG + Chr6:76014023-76014042 MsG0680033907.01.T01:intron 30.0%
AATGCCACATTATATTGTGA+AGG - Chr6:76015736-76015755 None:intergenic 30.0%
ACCCTAATTAGAGTTTGAAT+TGG - Chr6:76011592-76011611 None:intergenic 30.0%
AGGTAAGATATTCAACAAAC+AGG + Chr6:76015872-76015891 MsG0680033907.01.T01:CDS 30.0%
ATATGTAACAAGAGCAAGAA+TGG - Chr6:76015337-76015356 None:intergenic 30.0%
ATTAATGATATGCTCTTTGC+TGG + Chr6:76013795-76013814 MsG0680033907.01.T01:CDS 30.0%
ATTCAAGGGAATTGTAGTTA+TGG + Chr6:76012180-76012199 MsG0680033907.01.T01:CDS 30.0%
CACAATACACTATTAGTACA+AGG + Chr6:76015596-76015615 MsG0680033907.01.T01:intron 30.0%
CATACACGTAATTAATTTCC+GGG - Chr6:76013146-76013165 None:intergenic 30.0%
CATTATTTCCGCATTGAAAT+AGG - Chr6:76013893-76013912 None:intergenic 30.0%
CTCCAATTCAAACTCTAATT+AGG + Chr6:76011587-76011606 MsG0680033907.01.T01:five_prime_UTR 30.0%
CTTCAAATTGGAATCTGAAT+CGG - Chr6:76011767-76011786 None:intergenic 30.0%
CTTGCTCTTGTTACATATTA+TGG + Chr6:76015339-76015358 MsG0680033907.01.T01:intron 30.0%
CTTGTACTAATAGTGTATTG+TGG - Chr6:76015598-76015617 None:intergenic 30.0%
GAAGTAATGATGAAACTGTA+AGG + Chr6:76013272-76013291 MsG0680033907.01.T01:intron 30.0%
GTTTGTACTTATTGGATTCA+AGG + Chr6:76012165-76012184 MsG0680033907.01.T01:CDS 30.0%
TAAGATATTCAACAAACAGG+AGG + Chr6:76015875-76015894 MsG0680033907.01.T01:CDS 30.0%
TATGTAACAAGAGCAAGAAT+GGG - Chr6:76015336-76015355 None:intergenic 30.0%
TCATTGAAAATGATCATGCA+GGG - Chr6:76015005-76015024 None:intergenic 30.0%
TGAAGAACTGCAGATTAAAA+TGG - Chr6:76015467-76015486 None:intergenic 30.0%
TGAGAATAGCTAATGAACAA+TGG + Chr6:76012968-76012987 MsG0680033907.01.T01:intron 30.0%
TGATATGAGTTCAGTTCATT+AGG - Chr6:76014804-76014823 None:intergenic 30.0%
TGATCCTTCACAATATAATG+TGG + Chr6:76015729-76015748 MsG0680033907.01.T01:intron 30.0%
TGTCAAAAATGTTCACATAG+TGG + Chr6:76013923-76013942 MsG0680033907.01.T01:intron 30.0%
TTTAATAGAAGCAATAGGGT+TGG + Chr6:76015624-76015643 MsG0680033907.01.T01:intron 30.0%
! ATGTTAGTAAGTGATGGAAT+TGG + Chr6:76012715-76012734 MsG0680033907.01.T01:intron 30.0%
! GAATGTGTTGATCTTATGTA+TGG + Chr6:76014687-76014706 MsG0680033907.01.T01:intron 30.0%
! TTACATATTCCTTTTCGTTC+TGG - Chr6:76016262-76016281 None:intergenic 30.0%
! TTCTTTGGCTTAATCTCAAA+AGG - Chr6:76013436-76013455 None:intergenic 30.0%
!! ATCAGAAAGTGTGTTTTCAA+TGG + Chr6:76011899-76011918 MsG0680033907.01.T01:CDS 30.0%
!! TAGACTTTATTCTGGTTCAA+TGG + Chr6:76014263-76014282 MsG0680033907.01.T01:CDS 30.0%
!! TTTGGTTATGTTTTGAATGG+TGG + Chr6:76012641-76012660 MsG0680033907.01.T01:intron 30.0%
!! TTTGTTTCTATGGATTTCGA+CGG + Chr6:76011820-76011839 MsG0680033907.01.T01:exon 30.0%
!!! TTTTTGGGTAATGAGTTGAT+GGG + Chr6:76013172-76013191 MsG0680033907.01.T01:intron 30.0%
!!! TTTTTTGGGTAATGAGTTGA+TGG + Chr6:76013171-76013190 MsG0680033907.01.T01:intron 30.0%
ACATAAGATCAACACATTCC+AGG - Chr6:76014686-76014705 None:intergenic 35.0%
AGGCAAATGTTAGTAAGTGA+TGG + Chr6:76012709-76012728 MsG0680033907.01.T01:intron 35.0%
AGTGAATTGCCTACTTCTAA+TGG + Chr6:76011964-76011983 MsG0680033907.01.T01:CDS 35.0%
AGTTAAGAATGACTTCACGA+TGG - Chr6:76015818-76015837 None:intergenic 35.0%
ATAAGATCAACACATTCCAG+GGG - Chr6:76014684-76014703 None:intergenic 35.0%
ATCAATGAGAACAACCAAAC+AGG - Chr6:76013697-76013716 None:intergenic 35.0%
ATCGTAACTGATATCCTGTT+TGG + Chr6:76013680-76013699 MsG0680033907.01.T01:intron 35.0%
ATGATGAAACTGTAAGGGTT+TGG + Chr6:76013278-76013297 MsG0680033907.01.T01:intron 35.0%
CATAAGATCAACACATTCCA+GGG - Chr6:76014685-76014704 None:intergenic 35.0%
CTCATTGAAAATGATCATGC+AGG - Chr6:76015006-76015025 None:intergenic 35.0%
GATGTTATGATCTGCTTGTA+GGG + Chr6:76015199-76015218 MsG0680033907.01.T01:intron 35.0%
GATTTATTAAGCGCGTCTAT+TGG + Chr6:76013100-76013119 MsG0680033907.01.T01:intron 35.0%
GGAATTGTAGTTATGGAGAT+AGG + Chr6:76012187-76012206 MsG0680033907.01.T01:CDS 35.0%
GGAGCTAATAGACTTTATTC+TGG + Chr6:76014255-76014274 MsG0680033907.01.T01:CDS 35.0%
GTGAATTGCCTACTTCTAAT+GGG + Chr6:76011965-76011984 MsG0680033907.01.T01:CDS 35.0%
TAATATACTATGGCCCTGTT+TGG + Chr6:76012793-76012812 MsG0680033907.01.T01:intron 35.0%
TCAATGGAGATAAGTCTAGA+TGG + Chr6:76013741-76013760 MsG0680033907.01.T01:CDS 35.0%
TGATGAAACTGTAAGGGTTT+GGG + Chr6:76013279-76013298 MsG0680033907.01.T01:intron 35.0%
TGATGTTATGATCTGCTTGT+AGG + Chr6:76015198-76015217 MsG0680033907.01.T01:intron 35.0%
TGTATAGCTGTGATCAATCT+TGG + Chr6:76013487-76013506 MsG0680033907.01.T01:CDS 35.0%
TGTTATGATTTATGCAGGTG+TGG + Chr6:76014579-76014598 MsG0680033907.01.T01:intron 35.0%
TTGAATGAACAGGTTGTAAG+TGG + Chr6:76013211-76013230 MsG0680033907.01.T01:intron 35.0%
TTGGAACACGCAAAATTCAA+TGG + Chr6:76013725-76013744 MsG0680033907.01.T01:CDS 35.0%
TTTATCAGTGTTGTCAATCG+AGG - Chr6:76015698-76015717 None:intergenic 35.0%
TTTCTTCACTCTTGGAATGT+TGG + Chr6:76012216-76012235 MsG0680033907.01.T01:CDS 35.0%
! CTATCTGGGATTGAAAACTA+TGG + Chr6:76014009-76014028 MsG0680033907.01.T01:intron 35.0%
! GACACTGTCTTTTATATCTC+TGG + Chr6:76015785-76015804 MsG0680033907.01.T01:intron 35.0%
! GTTTTGTCAAATAGCAGCTA+TGG + Chr6:76015530-76015549 MsG0680033907.01.T01:intron 35.0%
! TAGTTTTCAATCCCAGATAG+CGG - Chr6:76014009-76014028 None:intergenic 35.0%
! TGGCATACCCAATTTTGTTA+AGG + Chr6:76013555-76013574 MsG0680033907.01.T01:CDS 35.0%
! TTGCAAGAGCATAGAAGTAT+GGG - Chr6:76015265-76015284 None:intergenic 35.0%
! TTTGGTTTCGTTGAATGAAC+AGG + Chr6:76013201-76013220 MsG0680033907.01.T01:intron 35.0%
!! GTTTATGCCTTTAGGATCTT+AGG + Chr6:76014031-76014050 MsG0680033907.01.T01:intron 35.0%
!! GTTTTAGTGTTAAGTATCCC+AGG + Chr6:76016323-76016342 MsG0680033907.01.T01:three_prime_UTR 35.0%
!! TATTTGTTATAGTGGTGACG+TGG + Chr6:76015160-76015179 MsG0680033907.01.T01:intron 35.0%
!!! ACGTGTATGAGTGCTTTTTT+GGG + Chr6:76013157-76013176 MsG0680033907.01.T01:intron 35.0%
!!! GGTTGTTCTCATTGATTTTC+AGG + Chr6:76013701-76013720 MsG0680033907.01.T01:intron 35.0%
!!! TACGTGTATGAGTGCTTTTT+TGG + Chr6:76013156-76013175 MsG0680033907.01.T01:intron 35.0%
!!! TCTTTTTAGAATGTGAGCTG+TGG + Chr6:76016301-76016320 MsG0680033907.01.T01:three_prime_UTR 35.0%
!!! TGAATTCTGGTTTTGAATGG+TGG + Chr6:76012447-76012466 MsG0680033907.01.T01:intron 35.0%
!!! TGGATCGAGTTTTAATTCGT+GGG + Chr6:76012050-76012069 MsG0680033907.01.T01:CDS 35.0%
!!! TTCTCATTGATTTTCAGGCT+TGG + Chr6:76013706-76013725 MsG0680033907.01.T01:intron 35.0%
AAACAAGTTGCGCCATTCAT+GGG - Chr6:76012539-76012558 None:intergenic 40.0%
AACTAACGAAACAACACCAC+GGG - Chr6:76014232-76014251 None:intergenic 40.0%
AAGCGTGTTTACAATCGTCT+TGG + Chr6:76011850-76011869 MsG0680033907.01.T01:CDS 40.0%
ACGGGCTTATGCTGATAATT+CGG + Chr6:76012005-76012024 MsG0680033907.01.T01:CDS 40.0%
ACGTGTGTACATAAACTCGA+CGG - Chr6:76012371-76012390 None:intergenic 40.0%
AGAGGAGAATAAATGCTAGG+AGG + Chr6:76016122-76016141 MsG0680033907.01.T01:three_prime_UTR 40.0%
AGCATATTCTTCACTGGTGA+TGG + Chr6:76015924-76015943 MsG0680033907.01.T01:CDS 40.0%
AGGATGGAGCTATATTGGTA+TGG + Chr6:76014151-76014170 MsG0680033907.01.T01:intron 40.0%
AGGGAATTCAGTGTGAAGTA+TGG + Chr6:76016092-76016111 MsG0680033907.01.T01:three_prime_UTR 40.0%
AGGGTATAATCACCCTTTGT+GGG + Chr6:76015218-76015237 MsG0680033907.01.T01:intron 40.0%
ATAAAGCTTATCCGAACCAG+AGG - Chr6:76013248-76013267 None:intergenic 40.0%
ATAGCTGTGATCAATCTTGG+CGG + Chr6:76013490-76013509 MsG0680033907.01.T01:CDS 40.0%
ATGAGTTCAGTTCATTAGGC+TGG - Chr6:76014800-76014819 None:intergenic 40.0%
ATTCTTTGAATCACCACCGT+TGG - Chr6:76011881-76011900 None:intergenic 40.0%
CAACTAACGAAACAACACCA+CGG - Chr6:76014233-76014252 None:intergenic 40.0%
CAGAGAGGAGAATAAATGCT+AGG + Chr6:76016119-76016138 MsG0680033907.01.T01:three_prime_UTR 40.0%
CCAATAACGTGCACTAAAGT+GGG + Chr6:76015994-76016013 MsG0680033907.01.T01:exon 40.0%
GAGGAGAATAAATGCTAGGA+GGG + Chr6:76016123-76016142 MsG0680033907.01.T01:three_prime_UTR 40.0%
GATAGTGTGAAACCCATGAA+TGG + Chr6:76012524-76012543 MsG0680033907.01.T01:intron 40.0%
GATTGCACCTAATGCATGAA+TGG - Chr6:76016184-76016203 None:intergenic 40.0%
GGCAATTCACTATGCAGAAA+AGG - Chr6:76011955-76011974 None:intergenic 40.0%
GGGAAATCAACTACTTACGA+TGG - Chr6:76015316-76015335 None:intergenic 40.0%
GGTGTAAGTTTCTTCACTCT+TGG + Chr6:76012208-76012227 MsG0680033907.01.T01:CDS 40.0%
GTAAACACTGCAAGGTTTCA+AGG - Chr6:76014409-76014428 None:intergenic 40.0%
GTAGGTTGTATGATCAGTGA+AGG + Chr6:76013517-76013536 MsG0680033907.01.T01:CDS 40.0%
GTGTTTACAATCGTCTTGGT+GGG + Chr6:76011854-76011873 MsG0680033907.01.T01:CDS 40.0%
TAAACAAGTTGCGCCATTCA+TGG - Chr6:76012540-76012559 None:intergenic 40.0%
TAAAGCTTATCCGAACCAGA+GGG - Chr6:76013247-76013266 None:intergenic 40.0%
TACACCTTCAATTCTCTTGC+AGG + Chr6:76014131-76014150 MsG0680033907.01.T01:intron 40.0%
TAGGGCTTGAGAAGTTGAAT+TGG - Chr6:76011696-76011715 None:intergenic 40.0%
TAGGGTATAATCACCCTTTG+TGG + Chr6:76015217-76015236 MsG0680033907.01.T01:intron 40.0%
TATTAAGCGCGTCTATTGGT+AGG + Chr6:76013104-76013123 MsG0680033907.01.T01:intron 40.0%
TCACTATGCAGAAAAGGACA+TGG - Chr6:76011949-76011968 None:intergenic 40.0%
TCAGCTTGAAGGACATAAGA+AGG + Chr6:76012260-76012279 MsG0680033907.01.T01:CDS 40.0%
TCCAATAACGTGCACTAAAG+TGG + Chr6:76015993-76016012 MsG0680033907.01.T01:exon 40.0%
TCCACACCTGAAAGAAACAA+CGG - Chr6:76014385-76014404 None:intergenic 40.0%
TTAGTGCACGTTATTGGATG+TGG - Chr6:76015991-76016010 None:intergenic 40.0%
TTGCCTACTTCTAATGGGAA+TGG + Chr6:76011970-76011989 MsG0680033907.01.T01:CDS 40.0%
TTGTTCAGATTTGCAGAGAG+AGG + Chr6:76015852-76015871 MsG0680033907.01.T01:intron 40.0%
! ATGGCGCAACTTGTTTATCA+TGG + Chr6:76012543-76012562 MsG0680033907.01.T01:intron 40.0%
! GGTTCGGATAAGCTTTATAC+TGG + Chr6:76013250-76013269 MsG0680033907.01.T01:CDS 40.0%
! GTTGCAAGAGCATAGAAGTA+TGG - Chr6:76015266-76015285 None:intergenic 40.0%
! TCTCCTGGTATTCCAGTTTT+GGG + Chr6:76013967-76013986 MsG0680033907.01.T01:intron 40.0%
!! ACTCTTGGAATGTTGGTGAT+GGG + Chr6:76012223-76012242 MsG0680033907.01.T01:CDS 40.0%
!! ATTCGGGGTTTTCTGGTAAT+CGG + Chr6:76012022-76012041 MsG0680033907.01.T01:CDS 40.0%
!! GGTGTTGTTTCGTTAGTTGT+TGG + Chr6:76014234-76014253 MsG0680033907.01.T01:CDS 40.0%
!! TCTTTGTTGACTCAGCTTGA+AGG + Chr6:76012249-76012268 MsG0680033907.01.T01:CDS 40.0%
!! TTCCATCCGTTGTTTCTTTC+AGG + Chr6:76014376-76014395 MsG0680033907.01.T01:intron 40.0%
!!! GATCGAGTTTTAATTCGTGG+GGG + Chr6:76012052-76012071 MsG0680033907.01.T01:CDS 40.0%
!!! GGATCGAGTTTTAATTCGTG+GGG + Chr6:76012051-76012070 MsG0680033907.01.T01:CDS 40.0%
!!! GGTTTTGAATGGTGGATAAC+CGG + Chr6:76012455-76012474 MsG0680033907.01.T01:intron 40.0%
!!! GTGGATCGAGTTTTAATTCG+TGG + Chr6:76012049-76012068 MsG0680033907.01.T01:CDS 40.0%
!!! TGAGTTGATGGGATGAGTTT+TGG + Chr6:76013183-76013202 MsG0680033907.01.T01:intron 40.0%
AAACTCGACGGCAAACATGT+TGG - Chr6:76012359-76012378 None:intergenic 45.0%
AACCCCAAAACTGGAATACC+AGG - Chr6:76013973-76013992 None:intergenic 45.0%
AATTGCTATGCCCTCTGGTT+CGG + Chr6:76013234-76013253 MsG0680033907.01.T01:CDS 45.0%
AGAATGACTTCACGATGGTC+AGG - Chr6:76015813-76015832 None:intergenic 45.0%
AGTGCATAAACTTGTCCGAC+AGG - Chr6:76013768-76013787 None:intergenic 45.0%
ATAAATGCTAGGAGGGATCC+TGG + Chr6:76016130-76016149 MsG0680033907.01.T01:three_prime_UTR 45.0%
ATAACGTGCACTAAAGTGGG+AGG + Chr6:76015997-76016016 MsG0680033907.01.T01:exon 45.0%
ATAAGTCTAGATGGCCCTGT+CGG + Chr6:76013750-76013769 MsG0680033907.01.T01:CDS 45.0%
ATCAATCTTGGCGGTGAAGT+AGG + Chr6:76013499-76013518 MsG0680033907.01.T01:CDS 45.0%
CAAAACTGGAATACCAGGAG+AGG - Chr6:76013968-76013987 None:intergenic 45.0%
CACCTGAAAGAAACAACGGA+TGG - Chr6:76014381-76014400 None:intergenic 45.0%
CAGCCTGCTCAGTTAAATCT+CGG - Chr6:76016219-76016238 None:intergenic 45.0%
CAGTGTCTGTAAACACTGCA+AGG - Chr6:76014417-76014436 None:intergenic 45.0%
CCAGTGAAGAATATGCTACC+AGG - Chr6:76015921-76015940 None:intergenic 45.0%
CCATCCTGCAAGAGAATTGA+AGG - Chr6:76014138-76014157 None:intergenic 45.0%
CCCACTTTAGTGCACGTTAT+TGG - Chr6:76015997-76016016 None:intergenic 45.0%
CCTGGTAGCATATTCTTCAC+TGG + Chr6:76015918-76015937 MsG0680033907.01.T01:CDS 45.0%
CCTTCAATTCTCTTGCAGGA+TGG + Chr6:76014135-76014154 MsG0680033907.01.T01:intron 45.0%
CGGGCTTATGCTGATAATTC+GGG + Chr6:76012006-76012025 MsG0680033907.01.T01:CDS 45.0%
CGTGTTTACAATCGTCTTGG+TGG + Chr6:76011853-76011872 MsG0680033907.01.T01:CDS 45.0%
CTTACGATGGCAGATCATAG+AGG - Chr6:76015303-76015322 None:intergenic 45.0%
CTTGCAGGATGGAGCTATAT+TGG + Chr6:76014146-76014165 MsG0680033907.01.T01:intron 45.0%
GAATGACTTCACGATGGTCA+GGG - Chr6:76015812-76015831 None:intergenic 45.0%
GAATGGTGCTCCTTCTAAAC+GGG + Chr6:76011987-76012006 MsG0680033907.01.T01:CDS 45.0%
GAGGATAGTGTGAGATGGAA+TGG - Chr6:76013949-76013968 None:intergenic 45.0%
GCACCATTCCCATTAGAAGT+AGG - Chr6:76011976-76011995 None:intergenic 45.0%
GGAATGGTGCTCCTTCTAAA+CGG + Chr6:76011986-76012005 MsG0680033907.01.T01:CDS 45.0%
GGGCTTATGCTGATAATTCG+GGG + Chr6:76012007-76012026 MsG0680033907.01.T01:CDS 45.0%
GGGTTTCACACTATCTAGAC+AGG - Chr6:76012519-76012538 None:intergenic 45.0%
GGTAGCACATTAGCAATACC+CGG + Chr6:76013125-76013144 MsG0680033907.01.T01:intron 45.0%
GGTATGCCAACAAAAAGCCA+GGG - Chr6:76013544-76013563 None:intergenic 45.0%
GGTGATGTCTGTTCTTTGCT+GGG + Chr6:76014454-76014473 MsG0680033907.01.T01:CDS 45.0%
GTGCATAAACTTGTCCGACA+GGG - Chr6:76013767-76013786 None:intergenic 45.0%
GTGGAATTGGATACCTGAAC+CGG + Chr6:76015965-76015984 MsG0680033907.01.T01:CDS 45.0%
GTGTTGTCAATCGAGGATCA+TGG - Chr6:76015691-76015710 None:intergenic 45.0%
GTTACGATACTACGTCTAGC+AGG - Chr6:76013668-76013687 None:intergenic 45.0%
GTTTCTATGGATTTCGACGG+TGG + Chr6:76011823-76011842 MsG0680033907.01.T01:exon 45.0%
TAATGCATGAATGGCTGCAG+AGG - Chr6:76016175-76016194 None:intergenic 45.0%
TAGGTGCAATCCAAGTTCTG+CGG + Chr6:76016193-76016212 MsG0680033907.01.T01:three_prime_UTR 45.0%
TATGCAGGTGTGGTATGCTA+CGG + Chr6:76014589-76014608 MsG0680033907.01.T01:intron 45.0%
TCACTTAAAGGTCATACCCG+TGG + Chr6:76014213-76014232 MsG0680033907.01.T01:CDS 45.0%
TCAGCATAAGCCCGTTTAGA+AGG - Chr6:76012000-76012019 None:intergenic 45.0%
TCATAAGGGGCAAGCAGTAT+TGG - Chr6:76014950-76014969 None:intergenic 45.0%
TCCAATTCCACACTCTCACT+TGG - Chr6:76015956-76015975 None:intergenic 45.0%
TCTGCAGCCATTCATGCATT+AGG + Chr6:76016174-76016193 MsG0680033907.01.T01:three_prime_UTR 45.0%
TGACCTTTAAGTGATGCAGC+TGG - Chr6:76014207-76014226 None:intergenic 45.0%
TGCATCATGCATCCCACAAA+GGG - Chr6:76015233-76015252 None:intergenic 45.0%
TGCTACGGAAAGTGGAAATC+TGG + Chr6:76014604-76014623 MsG0680033907.01.T01:CDS 45.0%
TTGTAACAACCTGTCCAGAC+TGG - Chr6:76013309-76013328 None:intergenic 45.0%
! CACTCTTGGAATGTTGGTGA+TGG + Chr6:76012222-76012241 MsG0680033907.01.T01:CDS 45.0%
! CTCCTGGTATTCCAGTTTTG+GGG + Chr6:76013968-76013987 MsG0680033907.01.T01:intron 45.0%
! CTCTCCTGGTATTCCAGTTT+TGG + Chr6:76013966-76013985 MsG0680033907.01.T01:intron 45.0%
! GCTGATAATTCGGGGTTTTC+TGG + Chr6:76012015-76012034 MsG0680033907.01.T01:CDS 45.0%
! GTGAAGTATGGATTGCAGAG+AGG + Chr6:76016104-76016123 MsG0680033907.01.T01:three_prime_UTR 45.0%
! GTGTGTTTTCAATGGCAAGC+AGG + Chr6:76011907-76011926 MsG0680033907.01.T01:CDS 45.0%
! TATTCCTTTTCGTTCTGGCC+CGG - Chr6:76016257-76016276 None:intergenic 45.0%
! TGGTGATGTCTGTTCTTTGC+TGG + Chr6:76014453-76014472 MsG0680033907.01.T01:CDS 45.0%
!! TCCGTTGTTTCTTTCAGGTG+TGG + Chr6:76014381-76014400 MsG0680033907.01.T01:intron 45.0%
!! TTCTTCACTGGTGATGGAAC+CGG + Chr6:76015930-76015949 MsG0680033907.01.T01:CDS 45.0%
ACAGACACTGACAGAGCACA+CGG + Chr6:76014427-76014446 MsG0680033907.01.T01:CDS 50.0%
AGTGGAATTGCTATGCCCTC+TGG + Chr6:76013229-76013248 MsG0680033907.01.T01:CDS 50.0%
ATTCCACACTCTCACTTGGC+CGG - Chr6:76015952-76015971 None:intergenic 50.0%
CAGGAGAGGATAGTGTGAGA+TGG - Chr6:76013954-76013973 None:intergenic 50.0%
CATCTCACACTATCCTCTCC+TGG + Chr6:76013952-76013971 MsG0680033907.01.T01:intron 50.0%
GAGCCAGCTGCATCACTTAA+AGG + Chr6:76014201-76014220 MsG0680033907.01.T01:CDS 50.0%
GGGTATGCCAACAAAAAGCC+AGG - Chr6:76013545-76013564 None:intergenic 50.0%
GTATGATCAGTGAAGGTCCC+TGG + Chr6:76013524-76013543 MsG0680033907.01.T01:CDS 50.0%
GTGCATCATGCATCCCACAA+AGG - Chr6:76015234-76015253 None:intergenic 50.0%
GTGTGGTATGCTACGGAAAG+TGG + Chr6:76014596-76014615 MsG0680033907.01.T01:CDS 50.0%
TAAATCTCGGCCGCAGAACT+TGG - Chr6:76016206-76016225 None:intergenic 50.0%
TATGCTCTTTGCTGGTACGC+AGG + Chr6:76013803-76013822 MsG0680033907.01.T01:CDS 50.0%
TGCACGTTATTGGATGTGGC+CGG - Chr6:76015987-76016006 None:intergenic 50.0%
TGTGGGATGCATGATGCACA+AGG + Chr6:76015235-76015254 MsG0680033907.01.T01:CDS 50.0%
! AATCGTCTTGGTGGGTCCAA+CGG + Chr6:76011862-76011881 MsG0680033907.01.T01:CDS 50.0%
! GCCAAGTGAGAGTGTGGAAT+TGG + Chr6:76015952-76015971 MsG0680033907.01.T01:CDS 50.0%
! TTATTGGATGTGGCCGGTTC+AGG - Chr6:76015981-76016000 None:intergenic 50.0%
!! GAAGGTCCCTGGCTTTTTGT+TGG + Chr6:76013535-76013554 MsG0680033907.01.T01:CDS 50.0%
!! TTTTCTGGTAATCGGCGTGG+TGG + Chr6:76012030-76012049 MsG0680033907.01.T01:CDS 50.0%
!!! AGTTTTAATTCGTGGGGGCC+GGG + Chr6:76012057-76012076 MsG0680033907.01.T01:CDS 50.0%
!!! GAGTTTTAATTCGTGGGGGC+CGG + Chr6:76012056-76012075 MsG0680033907.01.T01:CDS 50.0%
CGGCCGAGATTTAACTGAGC+AGG + Chr6:76016213-76016232 MsG0680033907.01.T01:three_prime_UTR 55.0%
GAATGGCTGCAGAGGATGGA+CGG - Chr6:76016167-76016186 None:intergenic 55.0%
GAGGTGCGAGCAATTCAGAC+TGG + Chr6:76015894-76015913 MsG0680033907.01.T01:CDS 55.0%
GCATGAATGGCTGCAGAGGA+TGG - Chr6:76016171-76016190 None:intergenic 55.0%
TGGACGGCTGAAGAGAATCC+AGG - Chr6:76016151-76016170 None:intergenic 55.0%
! CGAGCAATTCAGACTGGTCC+TGG + Chr6:76015900-76015919 MsG0680033907.01.T01:CDS 55.0%
! GGCAGCTCTAACCCCAAAAC+TGG - Chr6:76013982-76014001 None:intergenic 55.0%
! TCAATCCCAGATAGCGGCAC+TGG - Chr6:76014003-76014022 None:intergenic 55.0%
!! GGGTTTTCTGGTAATCGGCG+TGG + Chr6:76012027-76012046 MsG0680033907.01.T01:CDS 55.0%
!! TGCAGCTGGCTCGAAACAGT+TGG - Chr6:76014193-76014212 None:intergenic 55.0%
!!! GTTTTAATTCGTGGGGGCCG+GGG + Chr6:76012058-76012077 MsG0680033907.01.T01:CDS 55.0%
ACTGACAGAGCACACGGCTG+TGG + Chr6:76014433-76014452 MsG0680033907.01.T01:CDS 60.0%
CTGTACGCTGCAGAGGATCC+GGG + Chr6:76016236-76016255 MsG0680033907.01.T01:three_prime_UTR 60.0%
GAACCGGCCAAGTGAGAGTG+TGG + Chr6:76015946-76015965 MsG0680033907.01.T01:CDS 60.0%
GCTGTACGCTGCAGAGGATC+CGG + Chr6:76016235-76016254 MsG0680033907.01.T01:three_prime_UTR 60.0%
GGATCCGGGCCAGAACGAAA+AGG + Chr6:76016250-76016269 MsG0680033907.01.T01:three_prime_UTR 60.0%
TTGGGACTGCCAGTCTGGAC+AGG + Chr6:76013297-76013316 MsG0680033907.01.T01:intron 60.0%
! AGCTGCCAGTGCCGCTATCT+GGG + Chr6:76013995-76014014 MsG0680033907.01.T01:intron 60.0%
! AGGGTTTGGGACTGCCAGTC+TGG + Chr6:76013292-76013311 MsG0680033907.01.T01:intron 60.0%
!! GTAGGTGGTGGTGGTGGTAG+AGG + Chr6:76012120-76012139 MsG0680033907.01.T01:CDS 60.0%
GAGCAGGCTGTACGCTGCAG+AGG + Chr6:76016229-76016248 MsG0680033907.01.T01:three_prime_UTR 65.0%
! CGTCTTGGTGGGTCCAACGG+TGG + Chr6:76011865-76011884 MsG0680033907.01.T01:CDS 65.0%
! GAGCTGCCAGTGCCGCTATC+TGG + Chr6:76013994-76014013 MsG0680033907.01.T01:intron 65.0%
!! AGAAGTGGCGGACGTGGTCG+CGG + Chr6:76012081-76012100 MsG0680033907.01.T01:CDS 65.0%
!! GGTGGTGTAGGTGGTGGTGG+TGG + Chr6:76012114-76012133 MsG0680033907.01.T01:CDS 65.0%
CCACGTCCGCCACTTCTCCC+CGG - Chr6:76012078-76012097 None:intergenic 70.0%
GGACGGGGTGGTGTAGGTGG+TGG + Chr6:76012108-76012127 MsG0680033907.01.T01:CDS 70.0%
! CGGGGTGGTGTAGGTGGTGG+TGG + Chr6:76012111-76012130 MsG0680033907.01.T01:CDS 70.0%
ACGTGGTCGCGGTGGGGGAC+GGG + Chr6:76012092-76012111 MsG0680033907.01.T01:CDS 75.0%
GACGTGGTCGCGGTGGGGGA+CGG + Chr6:76012091-76012110 MsG0680033907.01.T01:CDS 75.0%
GGGGGACGGGGTGGTGTAGG+TGG + Chr6:76012105-76012124 MsG0680033907.01.T01:CDS 75.0%
GGTGGGGGACGGGGTGGTGT+AGG + Chr6:76012102-76012121 MsG0680033907.01.T01:CDS 75.0%
TCGTGGGGGCCGGGGAGAAG+TGG + Chr6:76012066-76012085 MsG0680033907.01.T01:CDS 75.0%
TGGGGGCCGGGGAGAAGTGG+CGG + Chr6:76012069-76012088 MsG0680033907.01.T01:CDS 75.0%
! TGGCGGACGTGGTCGCGGTG+GGG + Chr6:76012086-76012105 MsG0680033907.01.T01:CDS 75.0%
!! AGTGGCGGACGTGGTCGCGG+TGG + Chr6:76012084-76012103 MsG0680033907.01.T01:CDS 75.0%
!! CCGGGGAGAAGTGGCGGACG+TGG + Chr6:76012075-76012094 MsG0680033907.01.T01:CDS 75.0%
!! GTGGCGGACGTGGTCGCGGT+GGG + Chr6:76012085-76012104 MsG0680033907.01.T01:CDS 75.0%
! CGTGGTCGCGGTGGGGGACG+GGG + Chr6:76012093-76012112 MsG0680033907.01.T01:CDS 80.0%
! GGCGGACGTGGTCGCGGTGG+GGG + Chr6:76012087-76012106 MsG0680033907.01.T01:CDS 80.0%
! GGTCGCGGTGGGGGACGGGG+TGG + Chr6:76012096-76012115 MsG0680033907.01.T01:CDS 85.0%
Chromosome Type Strat End Strand Name
Chr6 gene 76011532 76016525 76011532 ID=MsG0680033907.01;Name=MsG0680033907.01
Chr6 mRNA 76011532 76016525 76011532 ID=MsG0680033907.01.T01;Parent=MsG0680033907.01;Name=MsG0680033907.01.T01;_AED=0.46;_eAED=0.46;_QI=297|0.87|0.88|1|1|1|9|515|428
Chr6 exon 76015860 76016525 76015860 ID=MsG0680033907.01.T01:exon:34408;Parent=MsG0680033907.01.T01
Chr6 exon 76015220 76015317 76015220 ID=MsG0680033907.01.T01:exon:34407;Parent=MsG0680033907.01.T01
Chr6 exon 76014596 76014655 76014596 ID=MsG0680033907.01.T01:exon:34406;Parent=MsG0680033907.01.T01
Chr6 exon 76014398 76014517 76014398 ID=MsG0680033907.01.T01:exon:34405;Parent=MsG0680033907.01.T01
Chr6 exon 76014153 76014299 76014153 ID=MsG0680033907.01.T01:exon:34404;Parent=MsG0680033907.01.T01
Chr6 exon 76013723 76013824 76013723 ID=MsG0680033907.01.T01:exon:34403;Parent=MsG0680033907.01.T01
Chr6 exon 76013487 76013576 76013487 ID=MsG0680033907.01.T01:exon:34402;Parent=MsG0680033907.01.T01
Chr6 exon 76013223 76013288 76013223 ID=MsG0680033907.01.T01:exon:34401;Parent=MsG0680033907.01.T01
Chr6 exon 76011532 76012281 76011532 ID=MsG0680033907.01.T01:exon:34400;Parent=MsG0680033907.01.T01
Chr6 five_prime_UTR 76011532 76011828 76011532 ID=MsG0680033907.01.T01:five_prime_utr;Parent=MsG0680033907.01.T01
Chr6 CDS 76011829 76012281 76011829 ID=MsG0680033907.01.T01:cds;Parent=MsG0680033907.01.T01
Chr6 CDS 76013223 76013288 76013223 ID=MsG0680033907.01.T01:cds;Parent=MsG0680033907.01.T01
Chr6 CDS 76013487 76013576 76013487 ID=MsG0680033907.01.T01:cds;Parent=MsG0680033907.01.T01
Chr6 CDS 76013723 76013824 76013723 ID=MsG0680033907.01.T01:cds;Parent=MsG0680033907.01.T01
Chr6 CDS 76014153 76014299 76014153 ID=MsG0680033907.01.T01:cds;Parent=MsG0680033907.01.T01
Chr6 CDS 76014398 76014517 76014398 ID=MsG0680033907.01.T01:cds;Parent=MsG0680033907.01.T01
Chr6 CDS 76014596 76014655 76014596 ID=MsG0680033907.01.T01:cds;Parent=MsG0680033907.01.T01
Chr6 CDS 76015220 76015317 76015220 ID=MsG0680033907.01.T01:cds;Parent=MsG0680033907.01.T01
Chr6 CDS 76015860 76016010 76015860 ID=MsG0680033907.01.T01:cds;Parent=MsG0680033907.01.T01
Chr6 three_prime_UTR 76016011 76016525 76016011 ID=MsG0680033907.01.T01:three_prime_utr;Parent=MsG0680033907.01.T01
Gene Sequence

>MsG0680033907.01.T01

ATGGATTTCGACGGTGGTAATAAGCGTGTTTACAATCGTCTTGGTGGGTCCAACGGTGGTGATTCAAAGAATCAGAAAGTGTGTTTTCAATGGCAAGCAGGAAAGTGTAATCGTTATCCATGTCCTTTTCTGCATAGTGAATTGCCTACTTCTAATGGGAATGGTGCTCCTTCTAAACGGGCTTATGCTGATAATTCGGGGTTTTCTGGTAATCGGCGTGGTGGATCGAGTTTTAATTCGTGGGGGCCGGGGAGAAGTGGCGGACGTGGTCGCGGTGGGGGACGGGGTGGTGTAGGTGGTGGTGGTGGTAGAGGAGTTGTTGTGAATGTTGAAAGAGTTTGTACTTATTGGATTCAAGGGAATTGTAGTTATGGAGATAGGTGTAAGTTTCTTCACTCTTGGAATGTTGGTGATGGGTTTTCTTTGTTGACTCAGCTTGAAGGACATAAGAAGGTTGTAAGTGGAATTGCTATGCCCTCTGGTTCGGATAAGCTTTATACTGGAAGTAATGATGAAACTTGTATAGCTGTGATCAATCTTGGCGGTGAAGTAGGTTGTATGATCAGTGAAGGTCCCTGGCTTTTTGTTGGCATACCCAATTTTGTTAAGGCTTGGAACACGCAAAATTCAATGGAGATAAGTCTAGATGGCCCTGTCGGACAAGTTTATGCACTTGTTGTGATTAATGATATGCTCTTTGCTGGTACGCAGGATGGAGCTATATTGGTATGGAAATTCAATGTTGCTGCCAACTGTTTCGAGCCAGCTGCATCACTTAAAGGTCATACCCGTGGTGTTGTTTCGTTAGTTGTTGGAGCTAATAGACTTTATTCTGGTTCAATGGACAATACAGTCAGAGTGTGGAACCTTGAAACCTTGCAGTGTTTACAGACACTGACAGAGCACACGGCTGTGGTGATGTCTGTTCTTTGCTGGGATCAGTTCCTTATATCTTGTTCATTAGACAAAACAGTAAAGGTGTGGTATGCTACGGAAAGTGGAAATCTGGAAGTGACATATACTCACACTGAAGAACATGGTATAATCACCCTTTGTGGGATGCATGATGCACAAGGCAAGCCCATACTTCTATGCTCTTGCAACGATAACACTGTTCGCCTCTATGATCTGCCATCATTTGCAGAGAGAGGTAAGATATTCAACAAACAGGAGGTGCGAGCAATTCAGACTGGTCCTGGTAGCATATTCTTCACTGGTGATGGAACCGGCCAAGTGAGAGTGTGGAATTGGATACCTGAACCGGCCACATCCAATAACGTGCACTAA
Protein sequence

>MsG0680033907.01.T01

MDFDGGNKRVYNRLGGSNGGDSKNQKVCFQWQAGKCNRYPCPFLHSELPTSNGNGAPSKRAYADNSGFSGNRRGGSSFNSWGPGRSGGRGRGGGRGGVGGGGGRGVVVNVERVCTYWIQGNCSYGDRCKFLHSWNVGDGFSLLTQLEGHKKVVSGIAMPSGSDKLYTGSNDETCIAVINLGGEVGCMISEGPWLFVGIPNFVKAWNTQNSMEISLDGPVGQVYALVVINDMLFAGTQDGAILVWKFNVAANCFEPAASLKGHTRGVVSLVVGANRLYSGSMDNTVRVWNLETLQCLQTLTEHTAVVMSVLCWDQFLISCSLDKTVKVWYATESGNLEVTYTHTEEHGIITLCGMHDAQGKPILLCSCNDNTVRLYDLPSFAERGKIFNKQEVRAIQTGPGSIFFTGDGTGQVRVWNWIPEPATSNNVH*