AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0180004016.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180004016.01.T01 MTR_1g073000 100.000 187 0 0 1 187 1 187 1.51e-137 382
MsG0180004016.01.T01 MTR_8g089990 65.550 209 58 5 1 203 1 201 6.07e-91 265
MsG0180004016.01.T01 MTR_4g094260 74.843 159 35 2 35 188 9 167 6.75e-84 247
MsG0180004016.01.T01 MTR_1g069140 61.350 163 56 1 46 201 105 267 1.25e-61 193
MsG0180004016.01.T01 MTR_1g069140 61.350 163 56 1 46 201 114 276 2.35e-61 193
MsG0180004016.01.T01 MTR_1g049070 61.538 104 33 1 89 192 24 120 9.12e-41 136
MsG0180004016.01.T01 MTR_3g028140 36.842 171 96 6 43 203 454 622 3.52e-21 91.3
MsG0180004016.01.T01 MTR_3g028140 38.760 129 72 2 43 164 454 582 4.53e-19 85.1
MsG0180004016.01.T01 MTR_8g037000 36.800 125 68 4 79 197 623 742 2.75e-15 73.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180004016.01.T01 AT5G10350 68.599 207 56 4 1 203 1 202 3.44e-94 273
MsG0180004016.01.T01 AT5G65260 70.048 207 56 4 1 203 1 205 6.68e-94 273
MsG0180004016.01.T01 AT5G10350 68.599 207 56 4 1 203 1 202 9.99e-94 273
MsG0180004016.01.T01 AT5G51120 78.235 170 35 2 35 203 45 213 1.22e-92 270
MsG0180004016.01.T01 AT5G51120 63.285 207 38 2 35 203 45 251 2.94e-84 250
MsG0180004016.01.T01 AT5G51120 81.600 125 22 1 80 203 4 128 7.79e-71 212
MsG0180004016.01.T01 AT5G10350 72.840 81 18 3 127 203 1 81 4.53e-32 112
MsG0180004016.01.T01 AT5G10350 72.840 81 18 3 127 203 1 81 4.53e-32 112
MsG0180004016.01.T01 AT5G10350 72.840 81 18 3 127 203 1 81 4.53e-32 112
MsG0180004016.01.T01 AT5G10350 72.840 81 18 3 127 203 1 81 4.53e-32 112
MsG0180004016.01.T01 AT2G24350 32.857 140 80 6 35 165 254 388 4.18e-11 61.6
MsG0180004016.01.T01 AT2G24350 32.857 140 80 6 35 165 383 517 5.64e-11 61.2
MsG0180004016.01.T01 AT3G12640 30.827 133 81 2 66 187 452 584 9.14e-11 60.8

Find 50 sgRNAs with CRISPR-Local

Find 238 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAGGAAGAGCACGAAGTTTA+TGG 0.241947 1:+71901332 MsG0180004016.01.T01:CDS
ACAATATTGACAGACAAATT+TGG 0.277446 1:+71904263 MsG0180004016.01.T01:CDS
AAATGCTGTTGGACTTCTTC+AGG 0.339186 1:-71904212 None:intergenic
TCTTTCCACCATATGCTTAC+GGG 0.386901 1:+71904564 MsG0180004016.01.T01:CDS
GCAAAACGTACAAATGTTCC+TGG 0.402106 1:+71904476 MsG0180004016.01.T01:CDS
TTCTTTCCACCATATGCTTA+CGG 0.403589 1:+71904563 MsG0180004016.01.T01:CDS
TCTACATAAGCAAATCCTTT+CGG 0.404767 1:-71904290 None:intergenic
CCTAACCTTGGTGGTGTGAT+TGG 0.419662 1:-71901435 None:intergenic
TTCTGTATCTCAAGCTGAAA+AGG 0.437005 1:+71901784 MsG0180004016.01.T01:CDS
CTTCCGTACTGCTTCAATCC+AGG 0.447125 1:-71904494 None:intergenic
AAAGAGATGGGCGCTGTTCA+AGG 0.456481 1:+71901611 MsG0180004016.01.T01:CDS
AGACGATAGAGTAGCGAAGA+TGG 0.465591 1:+71901307 MsG0180004016.01.T01:exon
CTGCTGGTTTCCGCGGTAGG+AGG 0.481689 1:+71904522 MsG0180004016.01.T01:CDS
TCAAGCTGAAAAGGAGGAAG+TGG 0.486267 1:+71901793 MsG0180004016.01.T01:CDS
ATCCATGTCAACCTCTTCAT+CGG 0.493847 1:-71901366 None:intergenic
CTCCTACCGCGGAAACCAGC+AGG 0.495710 1:-71904521 None:intergenic
ATAGCTTACCCGTAAGCATA+TGG 0.502661 1:-71904572 None:intergenic
TCCATGTCAACCTCTTCATC+GGG 0.505267 1:-71901365 None:intergenic
GAACGACAAGGAGAAGAAGA+AGG 0.509991 1:+71901274 MsG0180004016.01.T01:five_prime_UTR
AAGAATGGTGCAGGCATGAA+AGG 0.514431 1:-71904545 None:intergenic
TTAAATGAAACTGAATTGCA+TGG 0.518323 1:+71904350 MsG0180004016.01.T01:CDS
TAAGCATATGGTGGAAAGAA+TGG 0.526698 1:-71904560 None:intergenic
CACAGGACTGAAAATGCTGT+TGG 0.529319 1:-71904223 None:intergenic
TAGAGTAGCGAAGATGGAGC+AGG 0.531579 1:+71901313 MsG0180004016.01.T01:exon
GACAAATTTGGTCAACCGAA+AGG 0.538920 1:+71904275 MsG0180004016.01.T01:CDS
TATGGTGGAAAGAATGGTGC+AGG 0.545682 1:-71904554 None:intergenic
GCATGAAAGGCCTCCTACCG+CGG 0.549694 1:-71904532 None:intergenic
AACCCTAACCCTAACCTTGG+TGG 0.550125 1:-71901444 None:intergenic
GACTCTGTTCACAGTACCAC+AGG 0.550448 1:-71904240 None:intergenic
ATTGCATGGCCGACAGCTGA+AGG 0.563098 1:+71904364 MsG0180004016.01.T01:CDS
CAGTACGGAAGAAGACCTGC+TGG 0.568352 1:+71904506 MsG0180004016.01.T01:CDS
GACCTGCTGGTTTCCGCGGT+AGG 0.570934 1:+71904519 MsG0180004016.01.T01:CDS
AGCTAAGGTTGAGAAAGAGA+TGG 0.576917 1:+71901598 MsG0180004016.01.T01:CDS
GATGCTCGATCGATCTATGT+TGG 0.582767 1:+71901815 MsG0180004016.01.T01:CDS
GCTAAGGTTGAGAAAGAGAT+GGG 0.591216 1:+71901599 MsG0180004016.01.T01:CDS
TTGATGTTCAGCATCTATGT+CGG 0.596596 1:-71901390 None:intergenic
GATAAAATACCTTCAGCTGT+CGG 0.601292 1:-71904373 None:intergenic
TCCCGATGAAGAGGTTGACA+TGG 0.607730 1:+71901364 MsG0180004016.01.T01:CDS
GTTCCTGGATTGAAGCAGTA+CGG 0.610328 1:+71904491 MsG0180004016.01.T01:CDS
TCTTCGCGAAATGCAAGCTA+AGG 0.612879 1:+71901583 MsG0180004016.01.T01:CDS
TGTATCTCAAGCTGAAAAGG+AGG 0.614985 1:+71901787 MsG0180004016.01.T01:CDS
TGAGATACAGAAGACCCAGC+AGG 0.620132 1:-71901773 None:intergenic
AATTGGAGGATATGAAGAAG+AGG 0.623414 1:+71901531 MsG0180004016.01.T01:CDS
AGAAGACCTGCTGGTTTCCG+CGG 0.627211 1:+71904515 MsG0180004016.01.T01:CDS
GCTTACCCGTAAGCATATGG+TGG 0.644904 1:-71904569 None:intergenic
GAAGAGGCTGAAAGAGATCG+AGG 0.648698 1:+71901547 MsG0180004016.01.T01:CDS
TGCTGACATTCCCGATGAAG+AGG 0.653227 1:+71901355 MsG0180004016.01.T01:CDS
CGCATCCAATCACACCACCA+AGG 0.672127 1:+71901430 MsG0180004016.01.T01:CDS
GAGAGAGTGAGAGAACGACA+AGG 0.682441 1:+71901262 MsG0180004016.01.T01:five_prime_UTR
ATAGATGCTGAACATCAAGA+AGG 0.684507 1:+71901395 MsG0180004016.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTATAAACATGTAAATATT+TGG - Chr1:71903688-71903707 None:intergenic 10.0%
!!! AAATGTTGATTTAATTTTTT+TGG + Chr1:71902131-71902150 MsG0180004016.01.T01:intron 10.0%
!!! AAGATAGTTTTTTTAAAAAA+TGG - Chr1:71902648-71902667 None:intergenic 10.0%
!!! AATGTTGATTTAATTTTTTT+GGG + Chr1:71902132-71902151 MsG0180004016.01.T01:intron 10.0%
!! AATTTAATGTTTGGATTATT+GGG + Chr1:71902082-71902101 MsG0180004016.01.T01:intron 15.0%
!! ATAATTCAATTAAAACCAAA+TGG - Chr1:71904436-71904455 None:intergenic 15.0%
!! TGTTTATAATAGAAAAACAT+GGG + Chr1:71903234-71903253 MsG0180004016.01.T01:intron 15.0%
!! TTAAAAAAACTATCTTGAAA+AGG + Chr1:71902652-71902671 MsG0180004016.01.T01:intron 15.0%
!! TTGATCATAAATAAAATCAA+AGG - Chr1:71901859-71901878 None:intergenic 15.0%
!! TTGTTTATAATAGAAAAACA+TGG + Chr1:71903233-71903252 MsG0180004016.01.T01:intron 15.0%
!!! AAATGTTCTAAATTCTAATA+GGG - Chr1:71902394-71902413 None:intergenic 15.0%
!!! ATGTTGATTTAATTTTTTTG+GGG + Chr1:71902133-71902152 MsG0180004016.01.T01:intron 15.0%
!!! ATTTGGTTTTAATTGAATTA+TGG + Chr1:71904435-71904454 MsG0180004016.01.T01:intron 15.0%
!!! TAGATAGATCTAAAATTATA+TGG + Chr1:71903883-71903902 MsG0180004016.01.T01:intron 15.0%
!!! TAGTTTTTTTAAAAAATGGA+AGG - Chr1:71902644-71902663 None:intergenic 15.0%
!!! TTTTAAAAATTTGGATGATA+TGG - Chr1:71903643-71903662 None:intergenic 15.0%
!! AAAGTTTAATAGAGACAAAA+GGG - Chr1:71903170-71903189 None:intergenic 20.0%
!! AAATTAATGAAAAGTGAAAC+AGG - Chr1:71902549-71902568 None:intergenic 20.0%
!! ATAAAGTTTAATAGAGACAA+AGG - Chr1:71903172-71903191 None:intergenic 20.0%
!! CTATTTAACAACACTTAATT+CGG - Chr1:71902893-71902912 None:intergenic 20.0%
!! GAATTTAATGTTTGGATTAT+TGG + Chr1:71902081-71902100 MsG0180004016.01.T01:intron 20.0%
!! TAAAGTTTAATAGAGACAAA+AGG - Chr1:71903171-71903190 None:intergenic 20.0%
!! TAAAGTTTAATAGAGACAAA+GGG - Chr1:71903171-71903190 None:intergenic 20.0%
!! TAGGTTAAGAATTTAATGTT+TGG + Chr1:71902073-71902092 MsG0180004016.01.T01:intron 20.0%
!! TATGAAAGATTATGAAATAG+CGG + Chr1:71902989-71903008 MsG0180004016.01.T01:intron 20.0%
!! TTAAATCTCAAAAACTTCAA+CGG + Chr1:71904133-71904152 MsG0180004016.01.T01:intron 20.0%
!! TTTAAGCACTTAAATTTCAT+GGG + Chr1:71903801-71903820 MsG0180004016.01.T01:intron 20.0%
!!! AAATGTCGATTTTTGTTTTT+TGG + Chr1:71902270-71902289 MsG0180004016.01.T01:intron 20.0%
!!! AATGTCGATTTTTGTTTTTT+GGG + Chr1:71902271-71902290 MsG0180004016.01.T01:intron 20.0%
!!! AATGTTCTAAATTCTAATAG+GGG - Chr1:71902393-71902412 None:intergenic 20.0%
!!! CAAATGTTCTAAATTCTAAT+AGG - Chr1:71902395-71902414 None:intergenic 20.0%
!!! CTATTAGAATTTAGAACATT+TGG + Chr1:71902393-71902412 MsG0180004016.01.T01:intron 20.0%
!!! TAATTTATTTTTAGAGTGTG+TGG + Chr1:71902563-71902582 MsG0180004016.01.T01:intron 20.0%
!!! TAATTTTAGATCTATCTAGA+TGG - Chr1:71903881-71903900 None:intergenic 20.0%
!!! TGTTGATTTAATTTTTTTGG+GGG + Chr1:71902134-71902153 MsG0180004016.01.T01:intron 20.0%
!!! TTTTAAGCACTTAAATTTCA+TGG + Chr1:71903800-71903819 MsG0180004016.01.T01:intron 20.0%
!!! TTTTTGAGATTTAAATGACA+TGG - Chr1:71904127-71904146 None:intergenic 20.0%
! AAAAATGCATTAGATATGTG+AGG - Chr1:71904082-71904101 None:intergenic 25.0%
! AAAATGCATTAGATATGTGA+GGG - Chr1:71904081-71904100 None:intergenic 25.0%
! AATTAAGTCAGATATGTTTC+AGG - Chr1:71903614-71903633 None:intergenic 25.0%
! ACAATATTGACAGACAAATT+TGG + Chr1:71904263-71904282 MsG0180004016.01.T01:CDS 25.0%
! ACACATATATAAACCCAAAT+TGG + Chr1:71903509-71903528 MsG0180004016.01.T01:intron 25.0%
! ACTAAAATAGTTAGAGGAAT+AGG + Chr1:71903829-71903848 MsG0180004016.01.T01:intron 25.0%
! ATTAAAACCAAATGGAAACA+TGG - Chr1:71904428-71904447 None:intergenic 25.0%
! ATTCAGATCTGTTTATCATT+TGG + Chr1:71901705-71901724 MsG0180004016.01.T01:intron 25.0%
! CCATAACATTTACAAATGAT+CGG - Chr1:71903720-71903739 None:intergenic 25.0%
! CTAAAATAGTTAGAGGAATA+GGG + Chr1:71903830-71903849 MsG0180004016.01.T01:intron 25.0%
! GAGTATACTAAAATAGTTAG+AGG + Chr1:71903823-71903842 MsG0180004016.01.T01:intron 25.0%
! TTAAATGAAACTGAATTGCA+TGG + Chr1:71904350-71904369 MsG0180004016.01.T01:CDS 25.0%
!! ATGTTCTAAATTCTAATAGG+GGG - Chr1:71902392-71902411 None:intergenic 25.0%
!! TTATCATTTGGCTCAATTAT+TGG + Chr1:71901717-71901736 MsG0180004016.01.T01:intron 25.0%
!! TTGCTTACAGTTTGAATTTT+AGG + Chr1:71902054-71902073 MsG0180004016.01.T01:intron 25.0%
!!! ACCTGGGTATTTTAAAAATT+TGG - Chr1:71903652-71903671 None:intergenic 25.0%
!!! GCTCTTATTGTTAGTTTTAA+TGG - Chr1:71903557-71903576 None:intergenic 25.0%
!!! TCCAAATTTTTAAAATACCC+AGG + Chr1:71903648-71903667 MsG0180004016.01.T01:intron 25.0%
!!! TGTTTTAGTAAAGTACAAGT+AGG - Chr1:71903147-71903166 None:intergenic 25.0%
!!! TGTTTTGGTAAATAACTAGT+AGG + Chr1:71903257-71903276 MsG0180004016.01.T01:intron 25.0%
!!! TGTTTTGGTTAATAACTAGT+AGG + Chr1:71903411-71903430 MsG0180004016.01.T01:intron 25.0%
AAAACTAAAACTGCCTATTG+GGG - Chr1:71902419-71902438 None:intergenic 30.0%
AAATTTGGATGATATGGATC+TGG - Chr1:71903637-71903656 None:intergenic 30.0%
AGGAAAACAAACTAATGCTA+GGG - Chr1:71902829-71902848 None:intergenic 30.0%
ATATGGCCTATCTGTATTTA+TGG + Chr1:71903900-71903919 MsG0180004016.01.T01:intron 30.0%
CAAAACTAAAACTGCCTATT+GGG - Chr1:71902420-71902439 None:intergenic 30.0%
CCAATTCCAAACAACTTTAT+AGG - Chr1:71902517-71902536 None:intergenic 30.0%
CCGATCATTTGTAAATGTTA+TGG + Chr1:71903717-71903736 MsG0180004016.01.T01:intron 30.0%
GGTAATTTAGAAATTGAGCA+TGG + Chr1:71902734-71902753 MsG0180004016.01.T01:intron 30.0%
GTTGTTAAATAGCAGTATAG+CGG + Chr1:71902901-71902920 MsG0180004016.01.T01:intron 30.0%
TAAGCACCTATAAAGTTGTT+TGG + Chr1:71902508-71902527 MsG0180004016.01.T01:intron 30.0%
TAATGTTTGGATTATTGGGA+TGG + Chr1:71902086-71902105 MsG0180004016.01.T01:intron 30.0%
TACCATAGACAAAAATCTCT+CGG + Chr1:71901230-71901249 MsG0180004016.01.T01:five_prime_UTR 30.0%
TATAAACCCAAATTGGACTT+CGG + Chr1:71903516-71903535 MsG0180004016.01.T01:intron 30.0%
TATGGTAAACTTCTCATAAC+TGG + Chr1:71903735-71903754 MsG0180004016.01.T01:intron 30.0%
TCAAAACTAAAACTGCCTAT+TGG - Chr1:71902421-71902440 None:intergenic 30.0%
TCTACATAAGCAAATCCTTT+CGG - Chr1:71904293-71904312 None:intergenic 30.0%
TCTGATATCATGTCCTTTAA+AGG + Chr1:71902793-71902812 MsG0180004016.01.T01:intron 30.0%
TGAAAACTAAAACTGCTTGT+CGG - Chr1:71902244-71902263 None:intergenic 30.0%
TTAGATCTATCTAGATGGTT+TGG - Chr1:71903876-71903895 None:intergenic 30.0%
! ACTCAATTCTGCAATCTTTT+TGG + Chr1:71902002-71902021 MsG0180004016.01.T01:intron 30.0%
! ACTGGTTTCTAATATGAATC+AGG + Chr1:71904172-71904191 MsG0180004016.01.T01:intron 30.0%
! AGCTTTATATAACTAGCCAT+AGG - Chr1:71902489-71902508 None:intergenic 30.0%
! ATAGAAAAACATGGGTGTTT+TGG + Chr1:71903242-71903261 MsG0180004016.01.T01:intron 30.0%
! CCTATAAAGTTGTTTGGAAT+TGG + Chr1:71902514-71902533 MsG0180004016.01.T01:intron 30.0%
! GACTTTTCAGAAACATGTTA+AGG - Chr1:71902196-71902215 None:intergenic 30.0%
! TGAATTATGGTTTTTCCTTC+AGG + Chr1:71904448-71904467 MsG0180004016.01.T01:intron 30.0%
! TGTTCTAAATTCTAATAGGG+GGG - Chr1:71902391-71902410 None:intergenic 30.0%
!! TTAACATGAATCGATTTTGC+AGG + Chr1:71901508-71901527 MsG0180004016.01.T01:intron 30.0%
!!! TATTTTTAGAGTGTGTGGAA+TGG + Chr1:71902568-71902587 MsG0180004016.01.T01:intron 30.0%
!!! TTTTGATTTTAGATCCTGCT+GGG + Chr1:71901759-71901778 MsG0180004016.01.T01:intron 30.0%
!!! TTTTTGATTTTAGATCCTGC+TGG + Chr1:71901758-71901777 MsG0180004016.01.T01:intron 30.0%
AAAACTAAAACTGCTTGTCG+GGG - Chr1:71902242-71902261 None:intergenic 35.0%
AATCACTCCATGTTTCCATT+TGG + Chr1:71904418-71904437 MsG0180004016.01.T01:intron 35.0%
AATTGGAGGATATGAAGAAG+AGG + Chr1:71901531-71901550 MsG0180004016.01.T01:CDS 35.0%
ATAAGAGCTACTAGACCATT+TGG + Chr1:71903569-71903588 MsG0180004016.01.T01:intron 35.0%
ATAGATGCTGAACATCAAGA+AGG + Chr1:71901395-71901414 MsG0180004016.01.T01:CDS 35.0%
ATTGAAACCGAAGTCCAATT+TGG - Chr1:71903526-71903545 None:intergenic 35.0%
ATTGATTGAACCAAAAACCC+TGG + Chr1:71902452-71902471 MsG0180004016.01.T01:intron 35.0%
ATTGGACTTCGGTTTCAATT+TGG + Chr1:71903527-71903546 MsG0180004016.01.T01:intron 35.0%
CAAAGATGCACCTAAAAACT+CGG - Chr1:71902034-71902053 None:intergenic 35.0%
CATGGACCATAAATACAGAT+AGG - Chr1:71903909-71903928 None:intergenic 35.0%
CATTCAGGTAATCAACCAAA+TGG - Chr1:71903587-71903606 None:intergenic 35.0%
CTATCTGTATTTATGGTCCA+TGG + Chr1:71903907-71903926 MsG0180004016.01.T01:intron 35.0%
GAAAACTAAAACTGCTTGTC+GGG - Chr1:71902243-71902262 None:intergenic 35.0%
GAGGAAAACAAACTAATGCT+AGG - Chr1:71902830-71902849 None:intergenic 35.0%
GATAAAATACCTTCAGCTGT+CGG - Chr1:71904376-71904395 None:intergenic 35.0%
GGGAAACTAAACACCTTTAA+AGG - Chr1:71902809-71902828 None:intergenic 35.0%
TAGAACGTTTAGGTGTATGA+TGG + Chr1:71901954-71901973 MsG0180004016.01.T01:intron 35.0%
TATGTTTCAGGATCACATTC+AGG - Chr1:71903602-71903621 None:intergenic 35.0%
TGGTTTCTTACAAGTTACCT+GGG - Chr1:71903668-71903687 None:intergenic 35.0%
TTCTGTATCTCAAGCTGAAA+AGG + Chr1:71901784-71901803 MsG0180004016.01.T01:CDS 35.0%
TTCTTTCCACCATATGCTTA+CGG + Chr1:71904563-71904582 MsG0180004016.01.T01:CDS 35.0%
TTGAAACCGAAGTCCAATTT+GGG - Chr1:71903525-71903544 None:intergenic 35.0%
TTGATGTTCAGCATCTATGT+CGG - Chr1:71901393-71901412 None:intergenic 35.0%
TTGGTTTCTTACAAGTTACC+TGG - Chr1:71903669-71903688 None:intergenic 35.0%
TTTGGATTATTGGGATGGAT+GGG + Chr1:71902091-71902110 MsG0180004016.01.T01:intron 35.0%
! AAAAGTGAAACAGGCTGTTT+TGG - Chr1:71902540-71902559 None:intergenic 35.0%
! AACTTGCACCTTAGTGTTTT+AGG + Chr1:71903445-71903464 MsG0180004016.01.T01:intron 35.0%
! ACTTGCACCTTAGTGTTTTT+AGG - Chr1:71903112-71903131 None:intergenic 35.0%
! CAATTCTGCAATCTTTTTGG+CGG + Chr1:71902005-71902024 MsG0180004016.01.T01:intron 35.0%
! GGAGTGTTAATTCATCAAAC+TGG + Chr1:71904154-71904173 MsG0180004016.01.T01:intron 35.0%
! GTTTGGCCTAAAGTTTTCTT+TGG - Chr1:71903859-71903878 None:intergenic 35.0%
! TAAGCATATGGTGGAAAGAA+TGG - Chr1:71904563-71904582 None:intergenic 35.0%
! TGTGTGTTCAAGATTGATTC+TGG + Chr1:71904048-71904067 MsG0180004016.01.T01:intron 35.0%
!! AGTTTGTTTTCCTCTTGGAA+GGG + Chr1:71902836-71902855 MsG0180004016.01.T01:intron 35.0%
!! GATCGTTGTTTTCAACTACT+TGG - Chr1:71902344-71902363 None:intergenic 35.0%
!! TGAATCGATTTTGCAGGAAT+TGG + Chr1:71901514-71901533 MsG0180004016.01.T01:intron 35.0%
!! TTTCAACTACTTGGTGCATA+TGG - Chr1:71902335-71902354 None:intergenic 35.0%
!!! ATTGAGCATGGTTTTGTCAA+AGG + Chr1:71902746-71902765 MsG0180004016.01.T01:intron 35.0%
!!! GCATTAGTTTGTTTTCCTCT+TGG + Chr1:71902831-71902850 MsG0180004016.01.T01:intron 35.0%
!!! TAGTTTGTTTTCCTCTTGGA+AGG + Chr1:71902835-71902854 MsG0180004016.01.T01:intron 35.0%
AAATGCTGTTGGACTTCTTC+AGG - Chr1:71904215-71904234 None:intergenic 40.0%
AAGCATTACCATGCAGTACA+GGG - Chr1:71903782-71903801 None:intergenic 40.0%
AGCTAAGGTTGAGAAAGAGA+TGG + Chr1:71901598-71901617 MsG0180004016.01.T01:CDS 40.0%
AGGGTTAACGAATTAGGGTT+TGG + Chr1:71901461-71901480 MsG0180004016.01.T01:intron 40.0%
AGGGTTAGGGTTAACGAATT+AGG + Chr1:71901455-71901474 MsG0180004016.01.T01:intron 40.0%
AGTGCTCAAGTAGAACGTTT+AGG + Chr1:71901944-71901963 MsG0180004016.01.T01:intron 40.0%
ATCCATGTCAACCTCTTCAT+CGG - Chr1:71901369-71901388 None:intergenic 40.0%
GACAAATTTGGTCAACCGAA+AGG + Chr1:71904275-71904294 MsG0180004016.01.T01:CDS 40.0%
GCAAAACGTACAAATGTTCC+TGG + Chr1:71904476-71904495 MsG0180004016.01.T01:CDS 40.0%
GCTAAGGTTGAGAAAGAGAT+GGG + Chr1:71901599-71901618 MsG0180004016.01.T01:CDS 40.0%
GCTATATCACTATCGCATAG+CGG + Chr1:71902925-71902944 MsG0180004016.01.T01:intron 40.0%
GGGAGACCAAAGAAAACTTT+AGG + Chr1:71903850-71903869 MsG0180004016.01.T01:intron 40.0%
GGGTTAACGAATTAGGGTTT+GGG + Chr1:71901462-71901481 MsG0180004016.01.T01:intron 40.0%
GGGTTAGGGTTAACGAATTA+GGG + Chr1:71901456-71901475 MsG0180004016.01.T01:intron 40.0%
GTTTGGATTATTGGGATGGA+TGG + Chr1:71902090-71902109 MsG0180004016.01.T01:intron 40.0%
TAGACAAAAATCTCTCGGTG+CGG + Chr1:71901235-71901254 MsG0180004016.01.T01:five_prime_UTR 40.0%
TCTTTCCACCATATGCTTAC+GGG + Chr1:71904564-71904583 MsG0180004016.01.T01:CDS 40.0%
TGTATCTCAAGCTGAAAAGG+AGG + Chr1:71901787-71901806 MsG0180004016.01.T01:CDS 40.0%
TTAGAACATTTGGCCCCAAT+AGG + Chr1:71902403-71902422 MsG0180004016.01.T01:intron 40.0%
TTATGGTCCATGGCAGAATA+TGG + Chr1:71903917-71903936 MsG0180004016.01.T01:intron 40.0%
TTGGAAGGGACATGTTATCA+GGG + Chr1:71902850-71902869 MsG0180004016.01.T01:intron 40.0%
! AAAGCATTACCATGCAGTAC+AGG - Chr1:71903783-71903802 None:intergenic 40.0%
! CACCGAGAGATTTTTGTCTA+TGG - Chr1:71901235-71901254 None:intergenic 40.0%
! TGTCGTTTGATCCATGTAGT+CGG + Chr1:71903940-71903959 MsG0180004016.01.T01:intron 40.0%
!! ATCGATTTTGCAGGAATTGG+AGG + Chr1:71901517-71901536 MsG0180004016.01.T01:intron 40.0%
!! GGGCTGAATGTTCTAGAAAA+GGG - Chr1:71902222-71902241 None:intergenic 40.0%
!! TACCAAAGCTTTTTCCCACA+AGG - Chr1:71903971-71903990 None:intergenic 40.0%
!! TGCACCTTAGTGTTTTAGGT+GGG + Chr1:71903449-71903468 MsG0180004016.01.T01:intron 40.0%
!! TTGCACCTTAGTGTTTTAGG+TGG + Chr1:71903448-71903467 MsG0180004016.01.T01:intron 40.0%
!!! GCACCTTAGTGTTTTTAGGT+GGG - Chr1:71903108-71903127 None:intergenic 40.0%
!!! TGCACCTTAGTGTTTTTAGG+TGG - Chr1:71903109-71903128 None:intergenic 40.0%
AACGACACCATATTCTGCCA+TGG - Chr1:71903927-71903946 None:intergenic 45.0%
AAGAATGGTGCAGGCATGAA+AGG - Chr1:71904548-71904567 None:intergenic 45.0%
AGACGATAGAGTAGCGAAGA+TGG + Chr1:71901307-71901326 MsG0180004016.01.T01:exon 45.0%
AGTGTGTGGAATGGTTGAGA+TGG + Chr1:71902577-71902596 MsG0180004016.01.T01:intron 45.0%
CAATCACACCACCAAGGTTA+GGG + Chr1:71901436-71901455 MsG0180004016.01.T01:intron 45.0%
CACAGGACTGAAAATGCTGT+TGG - Chr1:71904226-71904245 None:intergenic 45.0%
CACCTTGTGGGAAAAAGCTT+TGG + Chr1:71903966-71903985 MsG0180004016.01.T01:intron 45.0%
CTGCACGTGATTGACCAATA+CGG + Chr1:71902308-71902327 MsG0180004016.01.T01:intron 45.0%
CTTGGAAGGGACATGTTATC+AGG + Chr1:71902849-71902868 MsG0180004016.01.T01:intron 45.0%
GAACGACAAGGAGAAGAAGA+AGG + Chr1:71901274-71901293 MsG0180004016.01.T01:five_prime_UTR 45.0%
GAATGGTTGAGATGGGAAAG+AGG + Chr1:71902585-71902604 MsG0180004016.01.T01:intron 45.0%
GAGATGGGAAAGAGGTTGTA+TGG + Chr1:71902593-71902612 MsG0180004016.01.T01:intron 45.0%
GATAACATGTCCCTTCCAAG+AGG - Chr1:71902849-71902868 None:intergenic 45.0%
GATGCTCGATCGATCTATGT+TGG + Chr1:71901815-71901834 MsG0180004016.01.T01:CDS 45.0%
GCACCCACCTAAAAACACTA+AGG + Chr1:71903102-71903121 MsG0180004016.01.T01:intron 45.0%
GCTGTGCTATAGCATTGTTG+CGG + Chr1:71903017-71903036 MsG0180004016.01.T01:intron 45.0%
GGTGGGTGCAAGTTAACAAA+TGG - Chr1:71903091-71903110 None:intergenic 45.0%
GTACATGTAGCCAGTTGGTT+TGG + Chr1:71902696-71902715 MsG0180004016.01.T01:intron 45.0%
GTGTGTGGAATGGTTGAGAT+GGG + Chr1:71902578-71902597 MsG0180004016.01.T01:intron 45.0%
GTGTGTGTGTGTGTGTGTAT+GGG - Chr1:71903491-71903510 None:intergenic 45.0%
GTGTTGTACATGTAGCCAGT+TGG + Chr1:71902691-71902710 MsG0180004016.01.T01:intron 45.0%
GTTAACCCTAACCCTAACCT+TGG - Chr1:71901450-71901469 None:intergenic 45.0%
GTTCCTGGATTGAAGCAGTA+CGG + Chr1:71904491-71904510 MsG0180004016.01.T01:CDS 45.0%
TCAAGCTGAAAAGGAGGAAG+TGG + Chr1:71901793-71901812 MsG0180004016.01.T01:CDS 45.0%
TCCATGTCAACCTCTTCATC+GGG - Chr1:71901368-71901387 None:intergenic 45.0%
TCTTCGCGAAATGCAAGCTA+AGG + Chr1:71901583-71901602 MsG0180004016.01.T01:CDS 45.0%
TGCACCCACCTAAAACACTA+AGG - Chr1:71903456-71903475 None:intergenic 45.0%
TGCACGTGATTGACCAATAC+GGG + Chr1:71902309-71902328 MsG0180004016.01.T01:intron 45.0%
TGTGTGTGTGTGTGTGTATG+GGG - Chr1:71903490-71903509 None:intergenic 45.0%
TGTGTGTGTGTGTGTGTGTA+TGG - Chr1:71903492-71903511 None:intergenic 45.0%
TTGAACCAAAAACCCTGGCA+TGG + Chr1:71902457-71902476 MsG0180004016.01.T01:intron 45.0%
! CAACAGCATTTTCAGTCCTG+TGG + Chr1:71904224-71904243 MsG0180004016.01.T01:CDS 45.0%
! CAGGAAGAGCACGAAGTTTA+TGG + Chr1:71901332-71901351 MsG0180004016.01.T01:CDS 45.0%
! TACGTTTTGCAGACACCTGA+AGG - Chr1:71904466-71904485 None:intergenic 45.0%
! TATGGTGGAAAGAATGGTGC+AGG - Chr1:71904557-71904576 None:intergenic 45.0%
! TTGGCGGTTTCCGAGTTTTT+AGG + Chr1:71902021-71902040 MsG0180004016.01.T01:intron 45.0%
!! CAAAGCTTTTTCCCACAAGG+TGG - Chr1:71903968-71903987 None:intergenic 45.0%
!! GGGGCTGAATGTTCTAGAAA+AGG - Chr1:71902223-71902242 None:intergenic 45.0%
!! TGTAGCCAGTTGGTTTGGTT+TGG + Chr1:71902701-71902720 MsG0180004016.01.T01:intron 45.0%
!!! TAAACTTTATTTTAATTAAA+AGG + Chr1:71903182-71903201 MsG0180004016.01.T01:intron 5.0%
AACCCTAACCCTAACCTTGG+TGG - Chr1:71901447-71901466 None:intergenic 50.0%
ACAAGGTGGAACCGACTACA+TGG - Chr1:71903954-71903973 None:intergenic 50.0%
ACACCACCAAGGTTAGGGTT+AGG + Chr1:71901441-71901460 MsG0180004016.01.T01:intron 50.0%
ACCAAAAACCCTGGCATGGT+AGG + Chr1:71902461-71902480 MsG0180004016.01.T01:intron 50.0%
ATGCAGTACAGGGCTGATGA+AGG - Chr1:71903772-71903791 None:intergenic 50.0%
CACCACCAAGGTTAGGGTTA+GGG + Chr1:71901442-71901461 MsG0180004016.01.T01:intron 50.0%
CATAGGTACCTACCATGCCA+GGG - Chr1:71902472-71902491 None:intergenic 50.0%
CCAATCACACCACCAAGGTT+AGG + Chr1:71901435-71901454 MsG0180004016.01.T01:intron 50.0%
CTTCCGTACTGCTTCAATCC+AGG - Chr1:71904497-71904516 None:intergenic 50.0%
GAAGAGGCTGAAAGAGATCG+AGG + Chr1:71901547-71901566 MsG0180004016.01.T01:CDS 50.0%
GACTCTGTTCACAGTACCAC+AGG - Chr1:71904243-71904262 None:intergenic 50.0%
GAGAGAGTGAGAGAACGACA+AGG + Chr1:71901262-71901281 MsG0180004016.01.T01:five_prime_UTR 50.0%
GTGTGTGTGTGTGTGTATGG+GGG - Chr1:71903489-71903508 None:intergenic 50.0%
TAGAGTAGCGAAGATGGAGC+AGG + Chr1:71901313-71901332 MsG0180004016.01.T01:exon 50.0%
TCCCGATGAAGAGGTTGACA+TGG + Chr1:71901364-71901383 MsG0180004016.01.T01:CDS 50.0%
TCGCTCCAAACCAAACCAAC+TGG - Chr1:71902709-71902728 None:intergenic 50.0%
TGAGATACAGAAGACCCAGC+AGG - Chr1:71901776-71901795 None:intergenic 50.0%
TGCTGACATTCCCGATGAAG+AGG + Chr1:71901355-71901374 MsG0180004016.01.T01:CDS 50.0%
TGTGTGTGTGTGTGTATGGG+GGG - Chr1:71903488-71903507 None:intergenic 50.0%
TTCATCAGCCCTGTACTGCA+TGG + Chr1:71903771-71903790 MsG0180004016.01.T01:intron 50.0%
TTGGTGCATATGGCCCGTAT+TGG - Chr1:71902325-71902344 None:intergenic 50.0%
! AAAGAGATGGGCGCTGTTCA+AGG + Chr1:71901611-71901630 MsG0180004016.01.T01:CDS 50.0%
! ACCTACCATGCCAGGGTTTT+TGG - Chr1:71902465-71902484 None:intergenic 50.0%
! ATGTAGTCGGTTCCACCTTG+TGG + Chr1:71903953-71903972 MsG0180004016.01.T01:intron 50.0%
! TGTAGTCGGTTCCACCTTGT+GGG + Chr1:71903954-71903973 MsG0180004016.01.T01:intron 50.0%
!! CCTAACCTTGGTGGTGTGAT+TGG - Chr1:71901438-71901457 None:intergenic 50.0%
!! GTTTGGTTTGGAGCGAGTCT+GGG + Chr1:71902713-71902732 MsG0180004016.01.T01:intron 50.0%
ATTGCATGGCCGACAGCTGA+AGG + Chr1:71904364-71904383 MsG0180004016.01.T01:CDS 55.0%
CAGTACGGAAGAAGACCTGC+TGG + Chr1:71904506-71904525 MsG0180004016.01.T01:CDS 55.0%
CCATAGGTACCTACCATGCC+AGG - Chr1:71902473-71902492 None:intergenic 55.0%
CCTGGCATGGTAGGTACCTA+TGG + Chr1:71902470-71902489 MsG0180004016.01.T01:intron 55.0%
CGCATCCAATCACACCACCA+AGG + Chr1:71901430-71901449 MsG0180004016.01.T01:CDS 55.0%
!! AGAAGACCTGCTGGTTTCCG+CGG + Chr1:71904515-71904534 MsG0180004016.01.T01:CDS 55.0%
!! GGTTTGGTTTGGAGCGAGTC+TGG + Chr1:71902712-71902731 MsG0180004016.01.T01:intron 55.0%
GCATGAAAGGCCTCCTACCG+CGG - Chr1:71904535-71904554 None:intergenic 60.0%
CTCCTACCGCGGAAACCAGC+AGG - Chr1:71904524-71904543 None:intergenic 65.0%
!! CTGCTGGTTTCCGCGGTAGG+AGG + Chr1:71904522-71904541 MsG0180004016.01.T01:CDS 65.0%
!! GACCTGCTGGTTTCCGCGGT+AGG + Chr1:71904519-71904538 MsG0180004016.01.T01:CDS 65.0%
Chromosome Type Strat End Strand Name
Chr1 gene 71901225 71904589 71901225 ID=MsG0180004016.01;Name=MsG0180004016.01
Chr1 mRNA 71901225 71904589 71901225 ID=MsG0180004016.01.T01;Parent=MsG0180004016.01;Name=MsG0180004016.01.T01;_AED=0.45;_eAED=0.45;_QI=101|1|0.8|1|1|1|5|0|203
Chr1 exon 71901225 71901451 71901225 ID=MsG0180004016.01.T01:exon:6326;Parent=MsG0180004016.01.T01
Chr1 exon 71901530 71901632 71901530 ID=MsG0180004016.01.T01:exon:6327;Parent=MsG0180004016.01.T01
Chr1 exon 71901771 71901841 71901771 ID=MsG0180004016.01.T01:exon:6328;Parent=MsG0180004016.01.T01
Chr1 exon 71904194 71904385 71904194 ID=MsG0180004016.01.T01:exon:6329;Parent=MsG0180004016.01.T01
Chr1 exon 71904470 71904589 71904470 ID=MsG0180004016.01.T01:exon:6330;Parent=MsG0180004016.01.T01
Chr1 five_prime_UTR 71901225 71901325 71901225 ID=MsG0180004016.01.T01:five_prime_utr;Parent=MsG0180004016.01.T01
Chr1 CDS 71901326 71901451 71901326 ID=MsG0180004016.01.T01:cds;Parent=MsG0180004016.01.T01
Chr1 CDS 71901530 71901632 71901530 ID=MsG0180004016.01.T01:cds;Parent=MsG0180004016.01.T01
Chr1 CDS 71901771 71901841 71901771 ID=MsG0180004016.01.T01:cds;Parent=MsG0180004016.01.T01
Chr1 CDS 71904194 71904385 71904194 ID=MsG0180004016.01.T01:cds;Parent=MsG0180004016.01.T01
Chr1 CDS 71904470 71904589 71904470 ID=MsG0180004016.01.T01:cds;Parent=MsG0180004016.01.T01
Gene Sequence

>MsG0180004016.01.T01

ATGGAGCAGGAAGAGCACGAAGTTTATGGTGCTGACATTCCCGATGAAGAGGTTGACATGGATGCCGACATAGATGCTGAACATCAAGAAGGCGATGAAGAACTCGCATCCAATCACACCACCAAGGAATTGGAGGATATGAAGAAGAGGCTGAAAGAGATCGAGGAAGAAGCTAGTGCTCTTCGCGAAATGCAAGCTAAGGTTGAGAAAGAGATGGGCGCTGTTCAAGATCCTGCTGGGTCTTCTGTATCTCAAGCTGAAAAGGAGGAAGTGGATGCTCGATCGATCTATGTTGGTAATGTTGACTATGCATGCACACCTGAAGAAGTCCAACAGCATTTTCAGTCCTGTGGTACTGTGAACAGAGTCACAATATTGACAGACAAATTTGGTCAACCGAAAGGATTTGCTTATGTAGAATTTGTTGAAGCTGATGCTGTTCAGAATGCTCTCATTTTAAATGAAACTGAATTGCATGGCCGACAGCTGAAGGTGTCTGCAAAACGTACAAATGTTCCTGGATTGAAGCAGTACGGAAGAAGACCTGCTGGTTTCCGCGGTAGGAGGCCTTTCATGCCTGCACCATTCTTTCCACCATATGCTTACGGGTAA

Protein sequence

>MsG0180004016.01.T01

MEQEEHEVYGADIPDEEVDMDADIDAEHQEGDEELASNHTTKELEDMKKRLKEIEEEASALREMQAKVEKEMGAVQDPAGSSVSQAEKEEVDARSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFVEADAVQNALILNETELHGRQLKVSAKRTNVPGLKQYGRRPAGFRGRRPFMPAPFFPPYAYG*