Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsG0680034294.01.T01 | XP_027187878.1 | 73.256 | 172 | 46 | 0 | 1 | 172 | 193 | 364 | 2.02E-89 | 275 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsG0680034294.01.T01 | B9SCB6 | 52.071 | 169 | 81 | 0 | 1 | 169 | 381 | 549 | 4.20E-60 | 198 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsG0680034294.01.T01 | A0A1S2Y0Q7 | 73.256 | 172 | 46 | 0 | 1 | 172 | 385 | 556 | 4.93e-88 | 277 |
MsG0680034294.01.T01 | A0A3Q7XM77 | 73.256 | 172 | 46 | 0 | 1 | 172 | 193 | 364 | 9.64e-90 | 275 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MsG0680034294.01 | MsG0680034326.01 | 0.800240 | 1.581049e-48 | 7.324894e-46 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsG0680034294.01.T01 | MTR_7g057340 | 66.279 | 172 | 58 | 0 | 1 | 172 | 1 | 172 | 2.93e-87 | 253 |
MsG0680034294.01.T01 | MTR_4g048460 | 69.186 | 172 | 53 | 0 | 1 | 172 | 390 | 561 | 5.41e-83 | 255 |
MsG0680034294.01.T01 | MTR_7g057390 | 63.953 | 172 | 59 | 1 | 1 | 172 | 1 | 169 | 2.12e-80 | 236 |
MsG0680034294.01.T01 | MTR_6g039440 | 65.116 | 172 | 60 | 0 | 1 | 172 | 382 | 553 | 2.79e-78 | 243 |
MsG0680034294.01.T01 | MTR_3g464190 | 63.953 | 172 | 62 | 0 | 1 | 172 | 386 | 557 | 4.12e-77 | 240 |
MsG0680034294.01.T01 | MTR_5g073260 | 63.529 | 170 | 62 | 0 | 1 | 170 | 381 | 550 | 1.29e-75 | 236 |
MsG0680034294.01.T01 | MTR_6g008560 | 61.047 | 172 | 67 | 0 | 1 | 172 | 230 | 401 | 2.40e-75 | 231 |
MsG0680034294.01.T01 | MTR_5g062230 | 64.535 | 172 | 61 | 0 | 1 | 172 | 382 | 553 | 1.52e-74 | 233 |
MsG0680034294.01.T01 | MTR_5g094620 | 62.209 | 172 | 65 | 0 | 1 | 172 | 366 | 537 | 3.48e-74 | 232 |
MsG0680034294.01.T01 | MTR_5g073200 | 61.176 | 170 | 66 | 0 | 1 | 170 | 378 | 547 | 1.04e-73 | 231 |
MsG0680034294.01.T01 | MTR_6g008560 | 61.047 | 172 | 67 | 0 | 1 | 172 | 386 | 557 | 2.03e-73 | 230 |
MsG0680034294.01.T01 | MTR_4g081460 | 55.030 | 169 | 76 | 0 | 1 | 169 | 391 | 559 | 5.73e-62 | 201 |
MsG0680034294.01.T01 | MTR_3g015080 | 48.256 | 172 | 51 | 2 | 1 | 172 | 1 | 134 | 1.74e-50 | 159 |
MsG0680034294.01.T01 | MTR_2g081980 | 42.690 | 171 | 95 | 3 | 3 | 172 | 389 | 557 | 4.51e-41 | 145 |
MsG0680034294.01.T01 | MTR_8g007515 | 38.150 | 173 | 104 | 3 | 1 | 172 | 386 | 556 | 2.74e-37 | 135 |
MsG0680034294.01.T01 | MTR_2g082050 | 38.012 | 171 | 103 | 3 | 1 | 170 | 289 | 457 | 3.87e-37 | 133 |
MsG0680034294.01.T01 | MTR_2g082010 | 38.150 | 173 | 104 | 3 | 1 | 172 | 398 | 568 | 1.66e-36 | 132 |
MsG0680034294.01.T01 | MTR_2g082060 | 37.572 | 173 | 94 | 4 | 1 | 172 | 394 | 553 | 8.84e-31 | 117 |
MsG0680034294.01.T01 | MTR_4g048460 | 69.333 | 75 | 23 | 0 | 1 | 75 | 390 | 464 | 1.66e-29 | 112 |
MsG0680034294.01.T01 | MTR_4g019550 | 36.129 | 155 | 94 | 3 | 19 | 172 | 408 | 558 | 1.50e-24 | 99.4 |
MsG0680034294.01.T01 | MTR_4g092020 | 30.636 | 173 | 115 | 2 | 1 | 170 | 399 | 569 | 3.88e-21 | 89.7 |
MsG0680034294.01.T01 | MTR_7g010710 | 29.341 | 167 | 118 | 0 | 3 | 169 | 386 | 552 | 5.08e-18 | 80.9 |
MsG0680034294.01.T01 | MTR_3g063120 | 27.647 | 170 | 117 | 4 | 1 | 166 | 321 | 488 | 1.79e-16 | 76.3 |
MsG0680034294.01.T01 | MTR_6g065040 | 28.205 | 156 | 104 | 3 | 1 | 150 | 243 | 396 | 5.75e-16 | 74.7 |
MsG0680034294.01.T01 | MTR_4g045810 | 25.294 | 170 | 127 | 0 | 1 | 170 | 410 | 579 | 8.44e-16 | 74.3 |
MsG0680034294.01.T01 | MTR_3g052120 | 30.000 | 170 | 113 | 4 | 1 | 166 | 345 | 512 | 1.27e-15 | 73.9 |
MsG0680034294.01.T01 | MTR_4g092010 | 26.036 | 169 | 117 | 3 | 1 | 164 | 391 | 556 | 1.43e-15 | 73.9 |
MsG0680034294.01.T01 | MTR_3g465090 | 27.922 | 154 | 107 | 3 | 1 | 150 | 345 | 498 | 3.09e-15 | 72.8 |
MsG0680034294.01.T01 | MTR_3g063140 | 28.205 | 156 | 104 | 3 | 1 | 150 | 345 | 498 | 4.89e-15 | 72.0 |
MsG0680034294.01.T01 | MTR_2g089130 | 25.490 | 153 | 112 | 2 | 1 | 152 | 395 | 546 | 7.57e-15 | 71.6 |
MsG0680034294.01.T01 | MTR_3g063170 | 28.477 | 151 | 100 | 3 | 1 | 145 | 345 | 493 | 9.14e-15 | 71.2 |
MsG0680034294.01.T01 | MTR_6g064980 | 27.329 | 161 | 109 | 3 | 1 | 155 | 345 | 503 | 1.51e-14 | 70.9 |
MsG0680034294.01.T01 | MTR_2g065450 | 25.595 | 168 | 124 | 1 | 3 | 170 | 422 | 588 | 4.59e-13 | 66.6 |
MsG0680034294.01.T01 | MTR_2g010960 | 27.168 | 173 | 113 | 5 | 1 | 163 | 349 | 518 | 5.19e-13 | 66.2 |
MsG0680034294.01.T01 | MTR_2g064425 | 25.000 | 168 | 125 | 1 | 3 | 170 | 418 | 584 | 8.29e-11 | 60.1 |
MsG0680034294.01.T01 | MTR_2g064425 | 25.000 | 168 | 125 | 1 | 3 | 170 | 403 | 569 | 9.42e-11 | 59.7 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsG0680034294.01.T01 | AT5G23960 | 40.698 | 172 | 101 | 1 | 1 | 172 | 377 | 547 | 6.07e-42 | 147 |
MsG0680034294.01.T01 | AT5G23960 | 40.698 | 172 | 101 | 1 | 1 | 172 | 375 | 545 | 6.51e-42 | 147 |
MsG0680034294.01.T01 | AT4G13300 | 32.353 | 170 | 114 | 1 | 4 | 172 | 385 | 554 | 1.03e-29 | 114 |
MsG0680034294.01.T01 | AT5G48110 | 31.361 | 169 | 113 | 3 | 4 | 172 | 174 | 339 | 1.78e-29 | 110 |
MsG0680034294.01.T01 | AT1G70080 | 34.104 | 173 | 113 | 1 | 1 | 172 | 439 | 611 | 2.59e-29 | 113 |
MsG0680034294.01.T01 | AT4G13280 | 31.953 | 169 | 114 | 1 | 5 | 172 | 386 | 554 | 8.25e-29 | 111 |
MsG0680034294.01.T01 | AT4G20200 | 31.953 | 169 | 113 | 2 | 5 | 172 | 437 | 604 | 2.33e-28 | 110 |
MsG0680034294.01.T01 | AT3G32030 | 30.058 | 173 | 120 | 1 | 1 | 172 | 432 | 604 | 5.78e-28 | 109 |
MsG0680034294.01.T01 | AT3G29410 | 30.539 | 167 | 116 | 0 | 4 | 170 | 330 | 496 | 5.80e-28 | 108 |
MsG0680034294.01.T01 | AT3G29410 | 30.178 | 169 | 118 | 0 | 4 | 172 | 435 | 603 | 8.44e-28 | 108 |
MsG0680034294.01.T01 | AT5G44630 | 31.928 | 166 | 113 | 0 | 5 | 170 | 390 | 555 | 2.51e-27 | 107 |
MsG0680034294.01.T01 | AT1G61680 | 34.969 | 163 | 105 | 1 | 1 | 162 | 400 | 562 | 4.08e-27 | 106 |
MsG0680034294.01.T01 | AT1G61680 | 34.969 | 163 | 105 | 1 | 1 | 162 | 407 | 569 | 4.32e-27 | 106 |
MsG0680034294.01.T01 | AT3G14520 | 29.762 | 168 | 117 | 1 | 6 | 172 | 437 | 604 | 2.10e-26 | 104 |
MsG0680034294.01.T01 | AT1G33750 | 28.402 | 169 | 121 | 0 | 4 | 172 | 435 | 603 | 2.70e-25 | 101 |
MsG0680034294.01.T01 | AT3G14490 | 33.529 | 170 | 111 | 2 | 4 | 172 | 433 | 601 | 5.26e-25 | 100 |
MsG0680034294.01.T01 | AT4G20210 | 27.811 | 169 | 122 | 0 | 4 | 172 | 432 | 600 | 1.02e-24 | 100 |
MsG0680034294.01.T01 | AT1G31950 | 28.824 | 170 | 120 | 1 | 4 | 172 | 437 | 606 | 2.20e-24 | 99.0 |
MsG0680034294.01.T01 | AT1G31950 | 28.824 | 170 | 120 | 1 | 4 | 172 | 438 | 607 | 2.41e-24 | 99.0 |
MsG0680034294.01.T01 | AT3G14540 | 28.571 | 168 | 119 | 1 | 6 | 172 | 434 | 601 | 3.70e-24 | 98.6 |
MsG0680034294.01.T01 | AT1G48800 | 26.667 | 165 | 121 | 0 | 4 | 168 | 438 | 602 | 1.65e-22 | 94.0 |
MsG0680034294.01.T01 | AT4G13280 | 34.351 | 131 | 85 | 1 | 43 | 172 | 394 | 524 | 9.40e-22 | 91.7 |
MsG0680034294.01.T01 | AT3G29190 | 27.647 | 170 | 115 | 2 | 5 | 170 | 434 | 599 | 9.65e-22 | 91.7 |
MsG0680034294.01.T01 | AT4G15870 | 27.976 | 168 | 120 | 1 | 6 | 172 | 431 | 598 | 1.36e-21 | 91.3 |
MsG0680034294.01.T01 | AT4G20230 | 28.313 | 166 | 118 | 1 | 4 | 168 | 448 | 613 | 1.38e-21 | 91.3 |
MsG0680034294.01.T01 | AT4G20230 | 28.313 | 166 | 118 | 1 | 4 | 168 | 436 | 601 | 1.41e-21 | 91.3 |
MsG0680034294.01.T01 | AT2G23230 | 28.485 | 165 | 117 | 1 | 4 | 167 | 431 | 595 | 1.35e-19 | 85.5 |
MsG0680034294.01.T01 | AT2G23230 | 28.485 | 165 | 117 | 1 | 4 | 167 | 426 | 590 | 1.50e-19 | 85.1 |
MsG0680034294.01.T01 | AT3G29110 | 28.743 | 167 | 119 | 0 | 4 | 170 | 429 | 595 | 2.99e-19 | 84.3 |
MsG0680034294.01.T01 | AT1G66020 | 27.811 | 169 | 122 | 0 | 4 | 172 | 430 | 598 | 1.19e-18 | 82.8 |
MsG0680034294.01.T01 | AT1G48820 | 25.153 | 163 | 121 | 1 | 4 | 165 | 395 | 557 | 9.53e-18 | 80.1 |
MsG0680034294.01.T01 | AT4G16730 | 24.855 | 173 | 127 | 2 | 1 | 170 | 319 | 491 | 1.27e-13 | 68.2 |
MsG0680034294.01.T01 | AT4G16730 | 24.855 | 173 | 127 | 2 | 1 | 170 | 365 | 537 | 1.45e-13 | 68.2 |
MsG0680034294.01.T01 | AT3G25810 | 25.281 | 178 | 127 | 3 | 1 | 172 | 420 | 597 | 1.48e-13 | 68.2 |
MsG0680034294.01.T01 | AT4G16740 | 26.590 | 173 | 122 | 4 | 1 | 172 | 396 | 564 | 9.64e-11 | 59.7 |
Find 32 sgRNAs with CRISPR-Local
Find 32 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CTGCTATACATTGCAGGCTT+AGG | 0.276774 | 6:-85210896 | MsG0680034294.01.T01:CDS |
AAACAGTTTGAGCAGAAAAT+AGG | 0.306839 | 6:-85210747 | MsG0680034294.01.T01:intron |
TGAGGGAATATGATTTGAAT+AGG | 0.340079 | 6:-85210695 | MsG0680034294.01.T01:CDS |
ATGCTGCTGCTATACATTGC+AGG | 0.354080 | 6:-85210902 | MsG0680034294.01.T01:CDS |
AGGACATGTTTCTTCGTACT+TGG | 0.357426 | 6:-85210727 | MsG0680034294.01.T01:CDS |
CGTACTTGGAATGTTATATG+AGG | 0.388936 | 6:-85210713 | MsG0680034294.01.T01:CDS |
AATAAATACTCAAATTTCTA+CGG | 0.417455 | 6:+85210461 | None:intergenic |
TGCATGTACTCCTCTGTTGT+TGG | 0.418606 | 6:+85211041 | None:intergenic |
AAAAGAAAATTGACAACGCT+TGG | 0.444020 | 6:-85210650 | MsG0680034294.01.T01:CDS |
TGCTATACATTGCAGGCTTA+GGG | 0.448464 | 6:-85210895 | MsG0680034294.01.T01:CDS |
TACGACTTCTTACATTGGAA+TGG | 0.454510 | 6:-85210982 | MsG0680034294.01.T01:CDS |
ATAGTTAGCATTCAGCCATC+TGG | 0.458951 | 6:+85211067 | None:intergenic |
ACGACTTCTTACATTGGAAT+GGG | 0.460983 | 6:-85210981 | MsG0680034294.01.T01:CDS |
GAGGGAATATGATTTGAATA+GGG | 0.475500 | 6:-85210694 | MsG0680034294.01.T01:CDS |
ATAAATACTCAAATTTCTAC+GGG | 0.477038 | 6:+85210462 | None:intergenic |
CGCTTGGAAAGATATAAATC+AGG | 0.490061 | 6:-85210634 | MsG0680034294.01.T01:CDS |
TTGAGAACACACGTAAGAAT+AGG | 0.491590 | 6:+85210582 | None:intergenic |
CGACAAAAGACATCTTTGAC+TGG | 0.519009 | 6:-85210950 | MsG0680034294.01.T01:CDS |
TAAGAAGTCGTAGCCAACAC+TGG | 0.522936 | 6:+85210993 | None:intergenic |
ATAGGTAACGGAACTTCAGT+TGG | 0.529746 | 6:+85210600 | None:intergenic |
CTTATATGAGTGAGGCCAGA+TGG | 0.549142 | 6:-85211082 | None:intergenic |
GTACTTGGAATGTTATATGA+GGG | 0.567173 | 6:-85210712 | MsG0680034294.01.T01:CDS |
ATCAAGTGGTTACCCAGTGT+TGG | 0.570889 | 6:-85211006 | MsG0680034294.01.T01:CDS |
TTGGCTACGACTTCTTACAT+TGG | 0.586299 | 6:-85210987 | MsG0680034294.01.T01:CDS |
CACATATCAACAATATCAAG+TGG | 0.594145 | 6:-85211020 | MsG0680034294.01.T01:CDS |
GATAACTACACACACTCTGA+CGG | 0.610210 | 6:-85210522 | MsG0680034294.01.T01:CDS |
AAGAAGTCGTAGCCAACACT+GGG | 0.613680 | 6:+85210994 | None:intergenic |
GACAAAAGACATCTTTGACT+GGG | 0.626667 | 6:-85210949 | MsG0680034294.01.T01:CDS |
AATCCAAGCTTATATGAGTG+AGG | 0.644710 | 6:-85211090 | None:intergenic |
GGATGAAATTGTGTCAAGCG+AGG | 0.675331 | 6:-85210874 | MsG0680034294.01.T01:intron |
ACACACGTAAGAATAGGTAA+CGG | 0.686084 | 6:+85210588 | None:intergenic |
TAACTATATACCAACAACAG+AGG | 0.703519 | 6:-85211051 | MsG0680034294.01.T01:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
AAAAGAAAATTGACAACGCT+TGG | - | Chr6:85210897-85210916 | MsG0680034294.01.T01:CDS | 30.0% | |
AAACAGTTTGAGCAGAAAAT+AGG | - | Chr6:85210800-85210819 | MsG0680034294.01.T01:intron | 30.0% | |
CACATATCAACAATATCAAG+TGG | - | Chr6:85210527-85210546 | MsG0680034294.01.T01:CDS | 30.0% | |
GAGGGAATATGATTTGAATA+GGG | - | Chr6:85210853-85210872 | MsG0680034294.01.T01:intron | 30.0% | |
GTACTTGGAATGTTATATGA+GGG | - | Chr6:85210835-85210854 | MsG0680034294.01.T01:intron | 30.0% | |
TAACTATATACCAACAACAG+AGG | - | Chr6:85210496-85210515 | MsG0680034294.01.T01:CDS | 30.0% | |
TGAGGGAATATGATTTGAAT+AGG | - | Chr6:85210852-85210871 | MsG0680034294.01.T01:intron | 30.0% | |
! | TTTCTTTTGGCATTCTTGAA+TGG | + | Chr6:85210885-85210904 | None:intergenic | 30.0% |
!! | AAGCGTTGTCAATTTTCTTT+TGG | + | Chr6:85210898-85210917 | None:intergenic | 30.0% |
ACACACGTAAGAATAGGTAA+CGG | + | Chr6:85210962-85210981 | None:intergenic | 35.0% | |
ACGACTTCTTACATTGGAAT+GGG | - | Chr6:85210566-85210585 | MsG0680034294.01.T01:CDS | 35.0% | |
CGCTTGGAAAGATATAAATC+AGG | - | Chr6:85210913-85210932 | MsG0680034294.01.T01:CDS | 35.0% | |
CGTACTTGGAATGTTATATG+AGG | - | Chr6:85210834-85210853 | MsG0680034294.01.T01:intron | 35.0% | |
GACAAAAGACATCTTTGACT+GGG | - | Chr6:85210598-85210617 | MsG0680034294.01.T01:CDS | 35.0% | |
TACGACTTCTTACATTGGAA+TGG | - | Chr6:85210565-85210584 | MsG0680034294.01.T01:CDS | 35.0% | |
TTGAGAACACACGTAAGAAT+AGG | + | Chr6:85210968-85210987 | None:intergenic | 35.0% | |
! | GCAGCAGCATTAACAATTTT+TGG | + | Chr6:85210635-85210654 | None:intergenic | 35.0% |
!! | CAATCTCTCACGTTTTATTG+AGG | - | Chr6:85210985-85211004 | MsG0680034294.01.T01:CDS | 35.0% |
AGGACATGTTTCTTCGTACT+TGG | - | Chr6:85210820-85210839 | MsG0680034294.01.T01:intron | 40.0% | |
ATAGTTAGCATTCAGCCATC+TGG | + | Chr6:85210483-85210502 | None:intergenic | 40.0% | |
CGACAAAAGACATCTTTGAC+TGG | - | Chr6:85210597-85210616 | MsG0680034294.01.T01:CDS | 40.0% | |
GATAACTACACACACTCTGA+CGG | - | Chr6:85211025-85211044 | MsG0680034294.01.T01:CDS | 40.0% | |
TGCTATACATTGCAGGCTTA+GGG | - | Chr6:85210652-85210671 | MsG0680034294.01.T01:CDS | 40.0% | |
TTGGCTACGACTTCTTACAT+TGG | - | Chr6:85210560-85210579 | MsG0680034294.01.T01:CDS | 40.0% | |
!! | ATAGGTAACGGAACTTCAGT+TGG | + | Chr6:85210950-85210969 | None:intergenic | 40.0% |
AAGAAGTCGTAGCCAACACT+GGG | + | Chr6:85210556-85210575 | None:intergenic | 45.0% | |
ATCAAGTGGTTACCCAGTGT+TGG | - | Chr6:85210541-85210560 | MsG0680034294.01.T01:CDS | 45.0% | |
ATGCTGCTGCTATACATTGC+AGG | - | Chr6:85210645-85210664 | MsG0680034294.01.T01:CDS | 45.0% | |
CTGCTATACATTGCAGGCTT+AGG | - | Chr6:85210651-85210670 | MsG0680034294.01.T01:CDS | 45.0% | |
GGATGAAATTGTGTCAAGCG+AGG | - | Chr6:85210673-85210692 | MsG0680034294.01.T01:CDS | 45.0% | |
TAAGAAGTCGTAGCCAACAC+TGG | + | Chr6:85210557-85210576 | None:intergenic | 45.0% | |
TGCATGTACTCCTCTGTTGT+TGG | + | Chr6:85210509-85210528 | None:intergenic | 45.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
Chr6 | gene | 85210470 | 85211099 | 85210470 | ID=MsG0680034294.01;Name=MsG0680034294.01 |
Chr6 | mRNA | 85210470 | 85211099 | 85210470 | ID=MsG0680034294.01.T01;Parent=MsG0680034294.01;Name=MsG0680034294.01.T01;_AED=0.38;_eAED=0.38;_QI=0|0|0|1|1|1|2|0|172 |
Chr6 | exon | 85210875 | 85211099 | 85210875 | ID=MsG0680034294.01.T01:exon:17747;Parent=MsG0680034294.01.T01 |
Chr6 | exon | 85210470 | 85210763 | 85210470 | ID=MsG0680034294.01.T01:exon:17746;Parent=MsG0680034294.01.T01 |
Chr6 | CDS | 85210875 | 85211099 | 85210875 | ID=MsG0680034294.01.T01:cds;Parent=MsG0680034294.01.T01 |
Chr6 | CDS | 85210470 | 85210763 | 85210470 | ID=MsG0680034294.01.T01:cds;Parent=MsG0680034294.01.T01 |
Gene Sequence |
Protein sequence |