Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0680034326.01.T01 | XP_004517081.1 | 56.667 | 270 | 58 | 4 | 10 | 220 | 287 | 556 | 3.97E-96 | 301 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0680034326.01.T01 | B9SCB6 | 42.164 | 268 | 96 | 3 | 10 | 218 | 283 | 550 | 4.20E-67 | 218 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0680034326.01.T01 | A0A1S2Z8R2 | 56.667 | 270 | 58 | 4 | 10 | 220 | 287 | 556 | 1.90e-96 | 301 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0180001008.01 | MsG0680034326.01 | 0.800836 | 1.195605e-48 | 5.623623e-46 |
| MsG0680034293.01 | MsG0680034326.01 | 0.831764 | 1.387547e-55 | 1.520552e-52 |
| MsG0680034294.01 | MsG0680034326.01 | 0.800240 | 1.581049e-48 | 7.324894e-46 |
| MsG0680034295.01 | MsG0680034326.01 | 0.832280 | 1.034164e-55 | 1.150385e-52 |
| MsG0680034298.01 | MsG0680034326.01 | 0.890487 | 9.424263e-74 | 7.938042e-70 |
| MsG0680034299.01 | MsG0680034326.01 | 0.814304 | 1.649776e-51 | 1.103018e-48 |
| MsG0680034306.01 | MsG0680034326.01 | 0.829928 | 3.912359e-55 | 4.061784e-52 |
| MsG0680034307.01 | MsG0680034326.01 | 0.830924 | 2.232505e-55 | 2.386113e-52 |
| MsG0680034312.01 | MsG0680034326.01 | 0.809090 | 2.247351e-50 | 1.307285e-47 |
| MsG0680034321.01 | MsG0680034326.01 | 0.870881 | 1.043894e-66 | 4.127296e-63 |
| MsG0680034325.01 | MsG0680034326.01 | 0.849989 | 2.269157e-60 | 4.379861e-57 |
| MsG0680034326.01 | MsG0680034328.01 | 0.915053 | 9.285719e-85 | 2.381427e-80 |
| MsG0680034326.01 | MsG0680034329.01 | 0.918736 | 1.078098e-86 | 3.335855e-82 |
| MsG0680034326.01 | MsG0680034348.01 | 0.874920 | 4.630394e-68 | 2.122350e-64 |
| MsG0680034326.01 | MsG0680034351.01 | 0.808608 | 2.849157e-50 | 1.636235e-47 |
| MsG0680034326.01 | MsG0680034352.01 | 0.809567 | 1.775491e-50 | 1.046055e-47 |
| MsG0680034326.01 | MsG0680034354.01 | 0.827477 | 1.531221e-54 | 1.479964e-51 |
| MsG0680034326.01 | MsG0680034356.01 | 0.818567 | 1.832361e-52 | 1.376441e-49 |
| MsG0680034326.01 | MsG0680034357.01 | 0.801924 | 7.156450e-49 | 3.459973e-46 |
| MsG0680034326.01 | MsG0680034366.01 | 0.879920 | 8.397579e-70 | 4.638822e-66 |
| MsG0680034326.01 | MsG0680034367.01 | 0.888885 | 3.967804e-73 | 3.130531e-69 |
| MsG0680034326.01 | MsG0680034369.01 | 0.808317 | 3.286916e-50 | 1.873471e-47 |
| MsG0680034326.01 | MsG0780039855.01 | 0.800415 | 1.456607e-48 | 6.778692e-46 |
| MsG0680034326.01 | MsG0780040498.01 | 0.815248 | 1.018818e-51 | 6.987261e-49 |
| MsG0680034326.01 | MsG0880046273.01 | 0.825004 | 5.937022e-54 | 5.345484e-51 |
| MsG0380016299.01 | MsG0680034326.01 | 0.817753 | 2.800552e-52 | 2.057275e-49 |
| MsG0280009232.01 | MsG0680034326.01 | 0.814242 | 1.702130e-51 | 1.136087e-48 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0680034326.01.T01 | MTR_6g039440 | 52.593 | 270 | 69 | 2 | 10 | 220 | 284 | 553 | 5.75e-91 | 278 |
| MsG0680034326.01.T01 | MTR_3g464190 | 50.370 | 270 | 75 | 2 | 10 | 220 | 288 | 557 | 5.57e-86 | 265 |
| MsG0680034326.01.T01 | MTR_7g057340 | 66.667 | 168 | 56 | 0 | 53 | 220 | 5 | 172 | 9.89e-86 | 251 |
| MsG0680034326.01.T01 | MTR_4g048460 | 70.238 | 168 | 50 | 0 | 53 | 220 | 394 | 561 | 3.74e-82 | 255 |
| MsG0680034326.01.T01 | MTR_4g048460 | 63.934 | 61 | 21 | 1 | 10 | 70 | 292 | 351 | 8.75e-16 | 75.9 |
| MsG0680034326.01.T01 | MTR_5g062230 | 50.741 | 270 | 74 | 3 | 10 | 220 | 284 | 553 | 5.72e-81 | 252 |
| MsG0680034326.01.T01 | MTR_7g057390 | 64.286 | 168 | 57 | 1 | 53 | 220 | 5 | 169 | 5.51e-79 | 234 |
| MsG0680034326.01.T01 | MTR_6g008560 | 46.296 | 270 | 86 | 3 | 10 | 220 | 132 | 401 | 4.25e-77 | 237 |
| MsG0680034326.01.T01 | MTR_5g073260 | 47.940 | 267 | 80 | 3 | 11 | 218 | 284 | 550 | 3.96e-76 | 239 |
| MsG0680034326.01.T01 | MTR_5g094620 | 47.407 | 270 | 83 | 4 | 10 | 220 | 268 | 537 | 4.11e-76 | 239 |
| MsG0680034326.01.T01 | MTR_6g008560 | 46.296 | 270 | 86 | 3 | 10 | 220 | 288 | 557 | 5.35e-75 | 236 |
| MsG0680034326.01.T01 | MTR_5g073200 | 61.446 | 166 | 64 | 0 | 53 | 218 | 382 | 547 | 4.29e-72 | 229 |
| MsG0680034326.01.T01 | MTR_5g073200 | 76.087 | 46 | 11 | 0 | 9 | 54 | 279 | 324 | 1.01e-11 | 63.9 |
| MsG0680034326.01.T01 | MTR_4g081460 | 54.598 | 174 | 77 | 1 | 47 | 220 | 391 | 562 | 5.83e-62 | 202 |
| MsG0680034326.01.T01 | MTR_4g081460 | 71.111 | 45 | 13 | 0 | 10 | 54 | 293 | 337 | 7.99e-15 | 73.2 |
| MsG0680034326.01.T01 | MTR_2g081980 | 35.531 | 273 | 112 | 6 | 10 | 220 | 287 | 557 | 4.65e-48 | 166 |
| MsG0680034326.01.T01 | MTR_3g015080 | 47.619 | 168 | 50 | 2 | 53 | 220 | 5 | 134 | 1.46e-47 | 153 |
| MsG0680034326.01.T01 | MTR_2g082010 | 33.704 | 270 | 116 | 6 | 12 | 220 | 301 | 568 | 2.58e-44 | 155 |
| MsG0680034326.01.T01 | MTR_2g082050 | 38.922 | 167 | 99 | 3 | 53 | 218 | 293 | 457 | 2.47e-37 | 135 |
| MsG0680034326.01.T01 | MTR_8g007515 | 39.053 | 169 | 100 | 3 | 53 | 220 | 390 | 556 | 4.35e-37 | 136 |
| MsG0680034326.01.T01 | MTR_8g007515 | 60.000 | 45 | 18 | 0 | 10 | 54 | 286 | 330 | 9.63e-11 | 61.2 |
| MsG0680034326.01.T01 | MTR_4g019550 | 32.342 | 269 | 120 | 5 | 10 | 220 | 294 | 558 | 4.49e-37 | 136 |
| MsG0680034326.01.T01 | MTR_2g082060 | 38.462 | 169 | 90 | 4 | 53 | 220 | 398 | 553 | 1.52e-30 | 118 |
| MsG0680034326.01.T01 | MTR_2g082060 | 60.000 | 45 | 18 | 0 | 10 | 54 | 295 | 339 | 1.40e-13 | 69.3 |
| MsG0680034326.01.T01 | MTR_4g048460 | 70.423 | 71 | 21 | 0 | 53 | 123 | 394 | 464 | 1.71e-27 | 108 |
| MsG0680034326.01.T01 | MTR_4g048460 | 63.934 | 61 | 21 | 1 | 10 | 70 | 292 | 351 | 8.16e-16 | 75.9 |
| MsG0680034326.01.T01 | MTR_4g092020 | 30.178 | 169 | 113 | 2 | 53 | 218 | 403 | 569 | 9.29e-20 | 87.4 |
| MsG0680034326.01.T01 | MTR_7g010710 | 27.835 | 194 | 134 | 2 | 24 | 217 | 365 | 552 | 1.07e-17 | 81.6 |
| MsG0680034326.01.T01 | MTR_4g045810 | 25.989 | 177 | 130 | 1 | 42 | 218 | 404 | 579 | 6.00e-16 | 76.3 |
| MsG0680034326.01.T01 | MTR_4g045810 | 55.000 | 60 | 26 | 1 | 10 | 69 | 312 | 370 | 2.37e-13 | 68.9 |
| MsG0680034326.01.T01 | MTR_3g063120 | 26.506 | 166 | 116 | 4 | 53 | 214 | 325 | 488 | 1.23e-14 | 72.4 |
| MsG0680034326.01.T01 | MTR_4g092010 | 25.455 | 165 | 115 | 3 | 53 | 212 | 395 | 556 | 2.39e-14 | 71.6 |
| MsG0680034326.01.T01 | MTR_3g052120 | 29.518 | 166 | 111 | 4 | 53 | 214 | 349 | 512 | 2.67e-14 | 71.6 |
| MsG0680034326.01.T01 | MTR_2g089130 | 25.000 | 160 | 116 | 3 | 44 | 200 | 388 | 546 | 3.47e-14 | 71.2 |
| MsG0680034326.01.T01 | MTR_6g065040 | 26.752 | 157 | 107 | 3 | 53 | 203 | 247 | 401 | 6.72e-14 | 70.1 |
| MsG0680034326.01.T01 | MTR_7g050990 | 64.444 | 45 | 16 | 0 | 10 | 54 | 106 | 150 | 1.63e-13 | 69.3 |
| MsG0680034326.01.T01 | MTR_3g465090 | 26.667 | 150 | 106 | 3 | 53 | 198 | 349 | 498 | 2.21e-13 | 68.9 |
| MsG0680034326.01.T01 | MTR_3g063140 | 26.974 | 152 | 103 | 3 | 53 | 198 | 349 | 498 | 4.21e-13 | 68.2 |
| MsG0680034326.01.T01 | MTR_3g063170 | 27.211 | 147 | 99 | 3 | 53 | 193 | 349 | 493 | 9.66e-13 | 67.0 |
| MsG0680034326.01.T01 | MTR_6g064980 | 26.115 | 157 | 108 | 3 | 53 | 203 | 349 | 503 | 1.29e-12 | 66.6 |
| MsG0680034326.01.T01 | MTR_2g010960 | 27.219 | 169 | 110 | 5 | 53 | 211 | 353 | 518 | 2.94e-12 | 65.5 |
| MsG0680034326.01.T01 | MTR_2g089120 | 24.157 | 178 | 126 | 5 | 25 | 200 | 377 | 547 | 5.70e-12 | 64.7 |
| MsG0680034326.01.T01 | MTR_2g065450 | 24.699 | 166 | 124 | 1 | 53 | 218 | 424 | 588 | 2.68e-11 | 62.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0680034326.01.T01 | AT5G23960 | 32.721 | 272 | 121 | 6 | 10 | 220 | 277 | 547 | 1.28e-40 | 145 |
| MsG0680034326.01.T01 | AT5G23960 | 40.476 | 168 | 99 | 1 | 53 | 220 | 379 | 545 | 3.35e-40 | 144 |
| MsG0680034326.01.T01 | AT3G14520 | 26.259 | 278 | 145 | 3 | 3 | 220 | 327 | 604 | 1.15e-31 | 121 |
| MsG0680034326.01.T01 | AT4G20200 | 31.606 | 193 | 127 | 3 | 32 | 220 | 413 | 604 | 3.14e-31 | 120 |
| MsG0680034326.01.T01 | AT5G48110 | 32.796 | 186 | 118 | 5 | 38 | 220 | 158 | 339 | 7.80e-31 | 116 |
| MsG0680034326.01.T01 | AT4G13300 | 31.522 | 184 | 122 | 2 | 41 | 220 | 371 | 554 | 2.43e-30 | 117 |
| MsG0680034326.01.T01 | AT3G29410 | 25.993 | 277 | 146 | 3 | 3 | 220 | 222 | 498 | 4.10e-30 | 116 |
| MsG0680034326.01.T01 | AT3G29410 | 25.993 | 277 | 146 | 3 | 3 | 220 | 327 | 603 | 8.96e-30 | 116 |
| MsG0680034326.01.T01 | AT3G14540 | 26.619 | 278 | 144 | 3 | 3 | 220 | 324 | 601 | 1.01e-29 | 116 |
| MsG0680034326.01.T01 | AT1G70080 | 30.258 | 271 | 129 | 6 | 10 | 220 | 341 | 611 | 2.53e-29 | 115 |
| MsG0680034326.01.T01 | AT3G32030 | 30.811 | 185 | 124 | 2 | 40 | 220 | 420 | 604 | 5.01e-29 | 114 |
| MsG0680034326.01.T01 | AT4G13280 | 30.366 | 191 | 129 | 2 | 34 | 220 | 364 | 554 | 1.23e-28 | 112 |
| MsG0680034326.01.T01 | AT4G13280 | 29.317 | 249 | 144 | 5 | 3 | 220 | 277 | 524 | 3.01e-28 | 111 |
| MsG0680034326.01.T01 | AT5G44630 | 31.928 | 166 | 113 | 0 | 53 | 218 | 390 | 555 | 1.51e-27 | 109 |
| MsG0680034326.01.T01 | AT4G15870 | 25.097 | 259 | 146 | 2 | 10 | 220 | 340 | 598 | 2.73e-27 | 109 |
| MsG0680034326.01.T01 | AT1G33750 | 28.804 | 184 | 128 | 1 | 40 | 220 | 420 | 603 | 2.81e-27 | 109 |
| MsG0680034326.01.T01 | AT3G14490 | 28.413 | 271 | 133 | 4 | 10 | 220 | 332 | 601 | 6.51e-27 | 108 |
| MsG0680034326.01.T01 | AT4G20210 | 26.842 | 190 | 136 | 1 | 34 | 220 | 411 | 600 | 5.32e-26 | 105 |
| MsG0680034326.01.T01 | AT1G31950 | 27.895 | 190 | 133 | 2 | 35 | 220 | 418 | 607 | 1.19e-25 | 104 |
| MsG0680034326.01.T01 | AT1G31950 | 27.895 | 190 | 133 | 2 | 35 | 220 | 417 | 606 | 1.32e-25 | 104 |
| MsG0680034326.01.T01 | AT1G61680 | 34.591 | 159 | 103 | 1 | 53 | 210 | 411 | 569 | 2.03e-25 | 103 |
| MsG0680034326.01.T01 | AT1G61680 | 34.591 | 159 | 103 | 1 | 53 | 210 | 404 | 562 | 2.10e-25 | 103 |
| MsG0680034326.01.T01 | AT1G48820 | 24.000 | 250 | 144 | 2 | 10 | 213 | 308 | 557 | 4.99e-24 | 99.8 |
| MsG0680034326.01.T01 | AT3G29190 | 27.320 | 194 | 130 | 3 | 34 | 220 | 412 | 601 | 5.86e-24 | 99.8 |
| MsG0680034326.01.T01 | AT4G20230 | 27.807 | 187 | 131 | 2 | 34 | 216 | 427 | 613 | 4.95e-23 | 97.1 |
| MsG0680034326.01.T01 | AT4G20230 | 27.807 | 187 | 131 | 2 | 34 | 216 | 415 | 601 | 5.29e-23 | 97.1 |
| MsG0680034326.01.T01 | AT1G48800 | 25.269 | 186 | 136 | 1 | 34 | 216 | 417 | 602 | 1.26e-22 | 95.9 |
| MsG0680034326.01.T01 | AT1G66020 | 23.162 | 272 | 149 | 2 | 9 | 220 | 327 | 598 | 4.66e-21 | 91.3 |
| MsG0680034326.01.T01 | AT2G23230 | 28.834 | 163 | 115 | 1 | 54 | 215 | 433 | 595 | 1.37e-19 | 87.0 |
| MsG0680034326.01.T01 | AT3G29110 | 27.660 | 188 | 133 | 1 | 34 | 218 | 408 | 595 | 1.43e-19 | 87.0 |
| MsG0680034326.01.T01 | AT2G23230 | 28.834 | 163 | 115 | 1 | 54 | 215 | 428 | 590 | 1.55e-19 | 87.0 |
| MsG0680034326.01.T01 | AT2G24210 | 23.913 | 276 | 147 | 5 | 8 | 220 | 315 | 590 | 9.73e-17 | 79.0 |
| MsG0680034326.01.T01 | AT4G16730 | 25.444 | 169 | 123 | 2 | 53 | 218 | 369 | 537 | 1.49e-13 | 69.3 |
| MsG0680034326.01.T01 | AT4G16730 | 25.146 | 171 | 125 | 2 | 53 | 220 | 323 | 493 | 1.72e-13 | 69.3 |
| MsG0680034326.01.T01 | AT3G25810 | 25.287 | 174 | 124 | 3 | 53 | 220 | 424 | 597 | 5.09e-13 | 67.8 |
Find 36 sgRNAs with CRISPR-Local
Find 85 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTTCCTTGCTTGAGAATATT+GGG | 0.241792 | 6:+85736678 | None:intergenic |
| CTGCTATACATTGCAGGCTT+AGG | 0.276774 | 6:-85735201 | MsG0680034326.01.T01:CDS |
| GTCATCAATGTATGATAAAA+TGG | 0.310334 | 6:+85736636 | None:intergenic |
| TGAGGGAATATGATTTGAAT+AGG | 0.340079 | 6:-85734999 | MsG0680034326.01.T01:CDS |
| GAGTAGTAGAATGTTGCTTT+TGG | 0.347068 | 6:-85736722 | None:intergenic |
| ATGCTGCTGCTATACATTGC+AGG | 0.354080 | 6:-85735207 | MsG0680034326.01.T01:CDS |
| AGGACATGTTTCTTCGTACT+TGG | 0.361077 | 6:-85735031 | MsG0680034326.01.T01:CDS |
| AATATTGGGGCTCAAATATA+CGG | 0.387528 | 6:+85736692 | None:intergenic |
| CGTACTTGGAATGTTATATG+AGG | 0.388936 | 6:-85735017 | MsG0680034326.01.T01:CDS |
| AATAAATACTCAAATTTCTA+CGG | 0.417455 | 6:+85734765 | None:intergenic |
| TGCATGTACTCCTCTGTTGT+TGG | 0.418606 | 6:+85735346 | None:intergenic |
| AAAAGAAAATTGACAACGCT+TGG | 0.444020 | 6:-85734954 | MsG0680034326.01.T01:CDS |
| TGCTATACATTGCAGGCTTA+GGG | 0.448464 | 6:-85735200 | MsG0680034326.01.T01:CDS |
| TACGACTTCTTACATTGGAA+TGG | 0.454510 | 6:-85735287 | MsG0680034326.01.T01:CDS |
| ACGACTTCTTACATTGGAAT+GGG | 0.460983 | 6:-85735286 | MsG0680034326.01.T01:CDS |
| GATGACACATATGATGCATA+TGG | 0.467097 | 6:-85736619 | MsG0680034326.01.T01:CDS |
| GAGGGAATATGATTTGAATA+GGG | 0.475500 | 6:-85734998 | MsG0680034326.01.T01:CDS |
| ATAAATACTCAAATTTCTAC+GGG | 0.477038 | 6:+85734766 | None:intergenic |
| CGCTTGGAAAGATATAAATC+AGG | 0.490061 | 6:-85734938 | MsG0680034326.01.T01:CDS |
| TTGAGAACACACGTAAGAAT+AGG | 0.491590 | 6:+85734886 | None:intergenic |
| CAACAAAAGACATCTTTGAC+TGG | 0.510706 | 6:-85735255 | MsG0680034326.01.T01:CDS |
| TAAGAAGTCGTAGCCAACAC+TGG | 0.522936 | 6:+85735298 | None:intergenic |
| ATAGGTAACGGAACTTCAGT+TGG | 0.529746 | 6:+85734904 | None:intergenic |
| TTCCTTGCTTGAGAATATTG+GGG | 0.534381 | 6:+85736679 | None:intergenic |
| AAACAGTTTGAGCAGAAAAG+AGG | 0.539017 | 6:-85735051 | MsG0680034326.01.T01:intron |
| AGCCCCAATATTCTCAAGCA+AGG | 0.547455 | 6:-85736681 | MsG0680034326.01.T01:CDS |
| GTACTTGGAATGTTATATGA+GGG | 0.567173 | 6:-85735016 | MsG0680034326.01.T01:CDS |
| ATCAAGTGGTTACCCAGTGT+TGG | 0.570889 | 6:-85735311 | MsG0680034326.01.T01:CDS |
| TTGGCTACGACTTCTTACAT+TGG | 0.586299 | 6:-85735292 | MsG0680034326.01.T01:CDS |
| CACATATCAACAATATCAAG+TGG | 0.594145 | 6:-85735325 | MsG0680034326.01.T01:CDS |
| GATAACTACACACACTCTGA+CGG | 0.610210 | 6:-85734826 | MsG0680034326.01.T01:CDS |
| AACAAAAGACATCTTTGACT+GGG | 0.611831 | 6:-85735254 | MsG0680034326.01.T01:CDS |
| AAGAAGTCGTAGCCAACACT+GGG | 0.613680 | 6:+85735299 | None:intergenic |
| GGATGAAATTGTGTCAAGCG+AGG | 0.675331 | 6:-85735179 | MsG0680034326.01.T01:intron |
| ACACACGTAAGAATAGGTAA+CGG | 0.686084 | 6:+85734892 | None:intergenic |
| TAACTATATACCAACAACAG+AGG | 0.703519 | 6:-85735356 | MsG0680034326.01.T01:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATATAAAATAAACGTTAAT+AGG | + | Chr6:85736046-85736065 | None:intergenic | 10.0% |
| !!! | ATTTCATTTTAAATTTTGTA+TGG | - | Chr6:85735441-85735460 | MsG0680034326.01.T01:intron | 10.0% |
| !! | TTAACAACATTTAATTACAT+AGG | - | Chr6:85736004-85736023 | MsG0680034326.01.T01:intron | 15.0% |
| !! | TTGTAGAATTAATATTACAA+AGG | + | Chr6:85735922-85735941 | None:intergenic | 15.0% |
| !!! | AAACATTTTTACATCATTTT+AGG | - | Chr6:85735542-85735561 | MsG0680034326.01.T01:intron | 15.0% |
| !!! | TTTAATTACATAGGATTTTT+TGG | - | Chr6:85736013-85736032 | MsG0680034326.01.T01:intron | 15.0% |
| !! | ATATCTTGACATTTAATTAG+TGG | - | Chr6:85735947-85735966 | MsG0680034326.01.T01:intron | 20.0% |
| !! | TGTAAAAAACTTATTATCCA+TGG | - | Chr6:85735681-85735700 | MsG0680034326.01.T01:intron | 20.0% |
| !!! | AAATTTTGTATGGTTATCAA+AGG | - | Chr6:85735451-85735470 | MsG0680034326.01.T01:intron | 20.0% |
| !!! | AATCAAAATGATTTTTAGGT+GGG | - | Chr6:85735183-85735202 | MsG0680034326.01.T01:CDS | 20.0% |
| !!! | AATTTTGTATGGTTATCAAA+GGG | - | Chr6:85735452-85735471 | MsG0680034326.01.T01:intron | 20.0% |
| !!! | ATTGTTTTATCTCTAAAGTT+TGG | + | Chr6:85734982-85735001 | None:intergenic | 20.0% |
| ! | AAGAAAAATGTATCATCATG+AGG | - | Chr6:85735757-85735776 | MsG0680034326.01.T01:intron | 25.0% |
| ! | ATGAAATCTTTGTTCAATTG+TGG | + | Chr6:85735428-85735447 | None:intergenic | 25.0% |
| ! | ATTATGGTGATACTTTATCA+TGG | + | Chr6:85735573-85735592 | None:intergenic | 25.0% |
| ! | GTCATCAATGTATGATAAAA+TGG | + | Chr6:85734853-85734872 | None:intergenic | 25.0% |
| ! | TGCAAAAAACTTATTATCCA+TGG | - | Chr6:85735836-85735855 | MsG0680034326.01.T01:intron | 25.0% |
| !! | TCATGAAGATACATTTTTCT+TGG | + | Chr6:85735603-85735622 | None:intergenic | 25.0% |
| !! | TGAATTAGAACTTTTTACTC+AGG | - | Chr6:85734899-85734918 | MsG0680034326.01.T01:CDS | 25.0% |
| !! | TGGCAATCAAAATGATTTTT+AGG | - | Chr6:85735179-85735198 | MsG0680034326.01.T01:intron | 25.0% |
| !! | TTCTTTTAACAATAGAGCAA+TGG | - | Chr6:85735150-85735169 | MsG0680034326.01.T01:intron | 25.0% |
| !!! | AACTCTTACTTCTTTTAAGA+AGG | + | Chr6:85735328-85735347 | None:intergenic | 25.0% |
| !!! | ACTCTTACTTCTTTTAAGAA+GGG | + | Chr6:85735327-85735346 | None:intergenic | 25.0% |
| !!! | CAATCAAAATGATTTTTAGG+TGG | - | Chr6:85735182-85735201 | MsG0680034326.01.T01:CDS | 25.0% |
| !!! | TATCCATGGTTTTATTAACT+CGG | - | Chr6:85735695-85735714 | MsG0680034326.01.T01:intron | 25.0% |
| AAAAGAAAATTGACAACGCT+TGG | - | Chr6:85736532-85736551 | MsG0680034326.01.T01:intron | 30.0% | |
| AACAAAAGACATCTTTGACT+GGG | - | Chr6:85736232-85736251 | MsG0680034326.01.T01:intron | 30.0% | |
| AATATTGGGGCTCAAATATA+CGG | + | Chr6:85734797-85734816 | None:intergenic | 30.0% | |
| CAATAGAGCAATGGTTAATA+TGG | - | Chr6:85735159-85735178 | MsG0680034326.01.T01:intron | 30.0% | |
| CACATATCAACAATATCAAG+TGG | - | Chr6:85736161-85736180 | MsG0680034326.01.T01:intron | 30.0% | |
| GAGGGAATATGATTTGAATA+GGG | - | Chr6:85736488-85736507 | MsG0680034326.01.T01:intron | 30.0% | |
| GTACTTGGAATGTTATATGA+GGG | - | Chr6:85736470-85736489 | MsG0680034326.01.T01:intron | 30.0% | |
| TAACTATATACCAACAACAG+AGG | - | Chr6:85736130-85736149 | MsG0680034326.01.T01:intron | 30.0% | |
| TGAGGGAATATGATTTGAAT+AGG | - | Chr6:85736487-85736506 | MsG0680034326.01.T01:intron | 30.0% | |
| TTTCCTTGCTTGAGAATATT+GGG | + | Chr6:85734811-85734830 | None:intergenic | 30.0% | |
| ! | AAAGTATCACCATAATGACT+TGG | - | Chr6:85735577-85735596 | MsG0680034326.01.T01:intron | 30.0% |
| ! | GTTGCTTTATAAATCACTCT+TGG | - | Chr6:85735243-85735262 | MsG0680034326.01.T01:CDS | 30.0% |
| ! | TTTCTTTTGGCATTCTTGAA+TGG | + | Chr6:85736520-85736539 | None:intergenic | 30.0% |
| ! | TTTTCCTTGCTTGAGAATAT+TGG | + | Chr6:85734812-85734831 | None:intergenic | 30.0% |
| ! | TTTTTACTCAGGCAATTGAA+AGG | - | Chr6:85734910-85734929 | MsG0680034326.01.T01:CDS | 30.0% |
| !! | AAGCGTTGTCAATTTTCTTT+TGG | + | Chr6:85736533-85736552 | None:intergenic | 30.0% |
| AAACAGTTTGAGCAGAAAAG+AGG | - | Chr6:85736435-85736454 | MsG0680034326.01.T01:intron | 35.0% | |
| AATCCAAGCTTATATGAGTG+AGG | - | Chr6:85736091-85736110 | MsG0680034326.01.T01:intron | 35.0% | |
| AATGTACCCATCTTCAATCT+TGG | - | Chr6:85735063-85735082 | MsG0680034326.01.T01:intron | 35.0% | |
| ACACACGTAAGAATAGGTAA+CGG | + | Chr6:85736597-85736616 | None:intergenic | 35.0% | |
| ACGACTTCTTACATTGGAAT+GGG | - | Chr6:85736200-85736219 | MsG0680034326.01.T01:intron | 35.0% | |
| CAACAAAAGACATCTTTGAC+TGG | - | Chr6:85736231-85736250 | MsG0680034326.01.T01:intron | 35.0% | |
| CGCTTGGAAAGATATAAATC+AGG | - | Chr6:85736548-85736567 | MsG0680034326.01.T01:intron | 35.0% | |
| CGTACTTGGAATGTTATATG+AGG | - | Chr6:85736469-85736488 | MsG0680034326.01.T01:intron | 35.0% | |
| GAACCGAGTTAATAAAACCA+TGG | + | Chr6:85735701-85735720 | None:intergenic | 35.0% | |
| GAACTGAGTTCATATAACCA+TGG | + | Chr6:85735856-85735875 | None:intergenic | 35.0% | |
| GAGCAAGAAATGAAGAAAGA+AGG | - | Chr6:85735283-85735302 | MsG0680034326.01.T01:CDS | 35.0% | |
| GATGACACATATGATGCATA+TGG | - | Chr6:85734867-85734886 | MsG0680034326.01.T01:CDS | 35.0% | |
| TAAAGCAACTTCGTGTAATC+CGG | + | Chr6:85735232-85735251 | None:intergenic | 35.0% | |
| TACGACTTCTTACATTGGAA+TGG | - | Chr6:85736199-85736218 | MsG0680034326.01.T01:intron | 35.0% | |
| TAGCAACCAAGATTGAAGAT+GGG | + | Chr6:85735072-85735091 | None:intergenic | 35.0% | |
| TAGGTGGGATATTAATTGCT+TGG | - | Chr6:85735198-85735217 | MsG0680034326.01.T01:CDS | 35.0% | |
| TGGTTATCAAAGGGAAGTTT+AGG | - | Chr6:85735461-85735480 | MsG0680034326.01.T01:intron | 35.0% | |
| TTAGCAACCAAGATTGAAGA+TGG | + | Chr6:85735073-85735092 | None:intergenic | 35.0% | |
| TTCCTTGCTTGAGAATATTG+GGG | + | Chr6:85734810-85734829 | None:intergenic | 35.0% | |
| TTGAGAACACACGTAAGAAT+AGG | + | Chr6:85736603-85736622 | None:intergenic | 35.0% | |
| ! | CTAGTCATCAAGTTTAGAGT+TGG | - | Chr6:85735020-85735039 | MsG0680034326.01.T01:CDS | 35.0% |
| ! | GCAGCAGCATTAACAATTTT+TGG | + | Chr6:85736269-85736288 | None:intergenic | 35.0% |
| ! | TTTTCTTGGCCAAGTCATTA+TGG | + | Chr6:85735589-85735608 | None:intergenic | 35.0% |
| !! | ACTTCTTTTAAGAAGGGTCA+AGG | + | Chr6:85735321-85735340 | None:intergenic | 35.0% |
| !! | CTTCTTTTAAGAAGGGTCAA+GGG | + | Chr6:85735320-85735339 | None:intergenic | 35.0% |
| AGGACATGTTTCTTCGTACT+TGG | - | Chr6:85736455-85736474 | MsG0680034326.01.T01:intron | 40.0% | |
| ATAGTTAGCATTCAGCCATC+TGG | + | Chr6:85736117-85736136 | None:intergenic | 40.0% | |
| GATAACTACACACACTCTGA+CGG | - | Chr6:85736660-85736679 | MsG0680034326.01.T01:CDS | 40.0% | |
| GTGGGATATTAATTGCTTGG+AGG | - | Chr6:85735201-85735220 | MsG0680034326.01.T01:CDS | 40.0% | |
| TAATTGCTTGGAGGATCTTC+CGG | - | Chr6:85735210-85735229 | MsG0680034326.01.T01:CDS | 40.0% | |
| TGCTATACATTGCAGGCTTA+GGG | - | Chr6:85736286-85736305 | MsG0680034326.01.T01:intron | 40.0% | |
| TTGGCTACGACTTCTTACAT+TGG | - | Chr6:85736194-85736213 | MsG0680034326.01.T01:intron | 40.0% | |
| !! | ATAGGTAACGGAACTTCAGT+TGG | + | Chr6:85736585-85736604 | None:intergenic | 40.0% |
| !! | CAATCTCTCGCGTTTTATTG+AGG | - | Chr6:85736620-85736639 | MsG0680034326.01.T01:CDS | 40.0% |
| AAGAAGTCGTAGCCAACACT+GGG | + | Chr6:85736190-85736209 | None:intergenic | 45.0% | |
| AGCCCCAATATTCTCAAGCA+AGG | - | Chr6:85734805-85734824 | MsG0680034326.01.T01:CDS | 45.0% | |
| ATCAAGTGGTTACCCAGTGT+TGG | - | Chr6:85736175-85736194 | MsG0680034326.01.T01:intron | 45.0% | |
| ATGCTGCTGCTATACATTGC+AGG | - | Chr6:85736279-85736298 | MsG0680034326.01.T01:intron | 45.0% | |
| CTGCTATACATTGCAGGCTT+AGG | - | Chr6:85736285-85736304 | MsG0680034326.01.T01:intron | 45.0% | |
| CTTATATGAGTGAGGCCAGA+TGG | - | Chr6:85736099-85736118 | MsG0680034326.01.T01:intron | 45.0% | |
| GGATGAAATTGTGTCAAGCG+AGG | - | Chr6:85736307-85736326 | MsG0680034326.01.T01:intron | 45.0% | |
| TAAGAAGTCGTAGCCAACAC+TGG | + | Chr6:85736191-85736210 | None:intergenic | 45.0% | |
| TGCATGTACTCCTCTGTTGT+TGG | + | Chr6:85736143-85736162 | None:intergenic | 45.0% | |
| TGGCCTCACTCATATAAGCT+TGG | + | Chr6:85736097-85736116 | None:intergenic | 45.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr6 | gene | 85734774 | 85736734 | 85734774 | ID=MsG0680034326.01;Name=MsG0680034326.01 |
| Chr6 | mRNA | 85734774 | 85736734 | 85734774 | ID=MsG0680034326.01.T01;Parent=MsG0680034326.01;Name=MsG0680034326.01.T01;_AED=0.34;_eAED=0.34;_QI=0|0|0|1|1|1|3|0|220 |
| Chr6 | exon | 85736577 | 85736734 | 85736577 | ID=MsG0680034326.01.T01:exon:12985;Parent=MsG0680034326.01.T01 |
| Chr6 | exon | 85735180 | 85735390 | 85735180 | ID=MsG0680034326.01.T01:exon:12984;Parent=MsG0680034326.01.T01 |
| Chr6 | exon | 85734774 | 85735067 | 85734774 | ID=MsG0680034326.01.T01:exon:12983;Parent=MsG0680034326.01.T01 |
| Chr6 | CDS | 85736577 | 85736734 | 85736577 | ID=MsG0680034326.01.T01:cds;Parent=MsG0680034326.01.T01 |
| Chr6 | CDS | 85735180 | 85735390 | 85735180 | ID=MsG0680034326.01.T01:cds;Parent=MsG0680034326.01.T01 |
| Chr6 | CDS | 85734774 | 85735067 | 85734774 | ID=MsG0680034326.01.T01:cds;Parent=MsG0680034326.01.T01 |
| Gene Sequence |
| Protein sequence |
