AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0680035158.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0680035158.01.T01 MTR_6g078950 88.525 61 7 0 86 146 248 308 1.00e-32 118
MsG0680035158.01.T01 MTR_6g078950 85.507 69 6 1 1 69 1 65 1.05e-31 115
MsG0680035158.01.T01 MTR_3g006280 78.182 55 12 0 92 146 738 792 1.60e-23 95.9
MsG0680035158.01.T01 MTR_3g006280 54.118 85 29 2 72 146 614 698 4.73e-19 82.8
MsG0680035158.01.T01 MTR_3g006280 58.108 74 27 1 73 146 958 1027 2.67e-18 80.9
MsG0680035158.01.T01 MTR_3g006280 56.757 74 28 1 73 146 911 980 3.82e-18 80.5
MsG0680035158.01.T01 MTR_3g006280 72.549 51 14 0 96 146 836 886 9.47e-18 79.3
MsG0680035158.01.T01 MTR_3g006280 58.108 74 27 1 73 146 1099 1168 9.47e-18 79.3
MsG0680035158.01.T01 MTR_3g006280 46.535 101 46 2 50 146 837 933 1.78e-15 72.8
MsG0680035158.01.T01 MTR_3g006280 50.562 89 30 3 69 146 1036 1121 1.86e-14 69.7
MsG0680035158.01.T01 MTR_3g006280 50.000 74 33 1 73 146 1146 1215 4.19e-14 68.6
MsG0680035158.01.T01 MTR_6g077640 56.322 87 31 2 67 146 725 811 2.74e-23 95.1
MsG0680035158.01.T01 MTR_6g077640 46.154 91 37 3 68 146 627 717 2.72e-16 75.1
MsG0680035158.01.T01 MTR_6g077640 67.273 55 18 0 92 146 833 887 4.91e-16 74.3
MsG0680035158.01.T01 MTR_6g077640 50.667 75 33 1 72 146 864 934 7.70e-15 70.9
MsG0680035158.01.T01 MTR_6g079140 56.322 87 31 2 67 146 727 813 2.74e-23 95.1
MsG0680035158.01.T01 MTR_6g079140 67.273 55 18 0 92 146 853 907 4.92e-16 74.3
MsG0680035158.01.T01 MTR_6g079140 45.161 93 37 3 68 146 627 719 5.07e-16 74.3
MsG0680035158.01.T01 MTR_6g079140 50.667 75 33 1 72 146 884 954 7.72e-15 70.9
MsG0680035158.01.T01 MTR_8g032830 56.471 85 27 2 72 146 623 707 7.88e-23 93.6
MsG0680035158.01.T01 MTR_6g078890 46.465 99 36 2 58 146 667 758 2.40e-22 92.4
MsG0680035158.01.T01 MTR_6g078890 58.904 73 29 1 74 146 875 946 1.52e-19 84.3
MsG0680035158.01.T01 MTR_6g078890 53.165 79 33 1 68 146 731 805 2.44e-17 77.8
MsG0680035158.01.T01 MTR_6g078890 46.914 81 33 1 76 146 819 899 2.01e-14 69.7
MsG0680035158.01.T01 MTR_6g078890 45.652 92 34 3 69 146 622 711 9.73e-13 64.7
MsG0680035158.01.T01 MTR_6g078875 52.083 96 35 2 58 146 37 128 1.22e-21 85.1
MsG0680035158.01.T01 MTR_6g078875 50.617 81 30 2 76 146 1 81 5.36e-14 65.5
MsG0680035158.01.T01 MTR_6g079090 55.682 88 27 2 69 146 648 733 3.69e-21 89.0
MsG0680035158.01.T01 MTR_6g079090 51.515 99 40 3 52 146 827 921 7.92e-20 85.1
MsG0680035158.01.T01 MTR_6g079090 50.617 81 30 1 76 146 700 780 6.39e-18 79.7
MsG0680035158.01.T01 MTR_6g079090 48.101 79 37 1 68 146 753 827 3.50e-14 68.9
MsG0680035158.01.T01 MTR_6g079090 42.424 99 49 2 52 146 874 968 3.60e-14 68.9
MsG0680035158.01.T01 MTR_6g079090 47.297 74 35 1 73 146 805 874 5.06e-13 65.5
MsG0680035158.01.T01 MTR_6g078980 54.545 88 28 2 69 146 40 125 5.58e-21 86.3
MsG0680035158.01.T01 MTR_6g078980 56.164 73 31 1 74 146 7 78 8.06e-18 77.8
MsG0680035158.01.T01 MTR_6g079000 68.519 54 17 0 93 146 680 733 4.58e-19 82.8
MsG0680035158.01.T01 MTR_6g079000 59.211 76 24 2 74 146 1226 1297 2.13e-18 80.9
MsG0680035158.01.T01 MTR_6g079000 47.000 100 45 2 51 146 1155 1250 4.48e-17 77.4
MsG0680035158.01.T01 MTR_6g079000 44.340 106 39 3 51 146 826 921 1.36e-16 75.9
MsG0680035158.01.T01 MTR_6g079000 53.947 76 28 2 74 146 1132 1203 2.43e-16 75.1
MsG0680035158.01.T01 MTR_6g079000 45.283 106 38 3 51 146 873 968 1.38e-15 73.2
MsG0680035158.01.T01 MTR_6g079000 45.000 100 47 2 51 146 1249 1344 1.41e-15 72.8
MsG0680035158.01.T01 MTR_6g079000 54.054 74 30 1 73 146 1040 1109 1.64e-15 72.8
MsG0680035158.01.T01 MTR_6g079000 44.340 106 39 3 51 146 1061 1156 2.31e-15 72.4
MsG0680035158.01.T01 MTR_6g079000 52.703 74 31 1 73 146 805 874 3.33e-15 72.0
MsG0680035158.01.T01 MTR_6g079000 50.633 79 35 1 68 146 706 780 5.80e-14 68.2
MsG0680035158.01.T01 MTR_6g079000 47.826 92 34 3 69 146 595 686 1.99e-13 66.6
MsG0680035158.01.T01 MTR_6g079000 47.126 87 36 3 69 146 1306 1391 3.73e-13 65.9
MsG0680035158.01.T01 MTR_6g079000 51.351 74 32 1 73 146 758 827 4.53e-13 65.9
MsG0680035158.01.T01 MTR_6g079000 53.947 76 28 2 74 146 944 1015 4.53e-13 65.9
MsG0680035158.01.T01 MTR_6g079000 54.412 68 27 1 79 146 999 1062 1.14e-12 64.7
MsG0680035158.01.T01 MTR_6g078480 54.255 94 36 3 58 146 698 789 4.75e-19 82.8
MsG0680035158.01.T01 MTR_6g078480 54.430 79 32 1 68 146 762 836 5.17e-18 80.1
MsG0680035158.01.T01 MTR_6g078480 41.237 97 55 2 51 146 788 883 2.11e-12 63.9
MsG0680035158.01.T01 MTR_0012s0290 49.425 87 33 2 69 146 649 733 5.69e-19 82.8
MsG0680035158.01.T01 MTR_0012s0290 55.696 79 31 1 68 146 706 780 2.10e-18 80.9
MsG0680035158.01.T01 MTR_0012s0290 50.000 68 30 1 79 146 764 827 7.39e-12 62.4
MsG0680035158.01.T01 MTR_0012s0290 49.425 87 33 2 69 146 649 733 8.13e-19 82.0
MsG0680035158.01.T01 MTR_0012s0290 55.696 79 31 1 68 146 706 780 2.94e-18 80.5
MsG0680035158.01.T01 MTR_0012s0290 50.000 68 30 1 79 146 764 827 9.75e-12 62.0
MsG0680035158.01.T01 MTR_0012s0290 54.321 81 33 1 66 146 586 662 1.07e-18 82.0
MsG0680035158.01.T01 MTR_0012s0290 50.000 68 30 1 79 146 646 709 7.12e-12 62.4
MsG0680035158.01.T01 MTR_8g087130 41.509 106 50 3 51 146 398 501 3.83e-18 80.1
MsG0680035158.01.T01 MTR_1g019550 56.000 75 29 1 72 146 955 1025 1.83e-16 75.5
MsG0680035158.01.T01 MTR_1g019550 67.273 55 18 0 92 146 1159 1213 8.66e-16 73.6
MsG0680035158.01.T01 MTR_1g019550 47.059 85 32 2 72 146 991 1072 2.64e-14 69.3
MsG0680035158.01.T01 MTR_1g019550 58.182 55 23 0 92 146 924 978 7.65e-14 68.2
MsG0680035158.01.T01 MTR_1g019550 38.679 106 45 2 51 146 1165 1260 1.02e-13 67.8
MsG0680035158.01.T01 MTR_1g019550 38.889 108 46 3 49 146 693 790 1.30e-13 67.4
MsG0680035158.01.T01 MTR_1g019550 58.182 55 23 0 92 146 783 837 1.49e-13 67.0
MsG0680035158.01.T01 MTR_1g019550 48.235 85 34 2 72 146 612 696 1.74e-13 67.0
MsG0680035158.01.T01 MTR_1g019550 40.566 106 43 3 51 146 1024 1119 7.03e-13 65.1
MsG0680035158.01.T01 MTR_1g019550 54.902 51 23 0 96 146 881 931 8.61e-13 65.1
MsG0680035158.01.T01 MTR_1g019550 49.333 75 34 1 72 146 814 884 2.19e-12 63.9
MsG0680035158.01.T01 MTR_1g019550 37.374 99 45 2 58 146 652 743 8.06e-12 62.0
MsG0680035158.01.T01 MTR_1g019550 38.824 85 42 1 72 146 1223 1307 1.73e-11 61.2
MsG0680035158.01.T01 MTR_1g019550 56.000 75 29 1 72 146 922 992 1.90e-16 75.5
MsG0680035158.01.T01 MTR_1g019550 67.273 55 18 0 92 146 1126 1180 9.00e-16 73.6
MsG0680035158.01.T01 MTR_1g019550 47.059 85 32 2 72 146 958 1039 2.77e-14 69.3
MsG0680035158.01.T01 MTR_1g019550 58.182 55 23 0 92 146 891 945 7.86e-14 67.8
MsG0680035158.01.T01 MTR_1g019550 38.679 106 45 2 51 146 1132 1227 1.05e-13 67.4
MsG0680035158.01.T01 MTR_1g019550 38.889 108 46 3 49 146 660 757 1.36e-13 67.4
MsG0680035158.01.T01 MTR_1g019550 58.182 55 23 0 92 146 750 804 1.53e-13 67.0
MsG0680035158.01.T01 MTR_1g019550 48.235 85 34 2 72 146 579 663 1.82e-13 67.0
MsG0680035158.01.T01 MTR_1g019550 40.566 106 43 3 51 146 991 1086 7.16e-13 65.1
MsG0680035158.01.T01 MTR_1g019550 54.902 51 23 0 96 146 848 898 8.94e-13 65.1
MsG0680035158.01.T01 MTR_1g019550 49.333 75 34 1 72 146 781 851 2.23e-12 63.9
MsG0680035158.01.T01 MTR_1g019550 37.374 99 45 2 58 146 619 710 8.29e-12 62.0
MsG0680035158.01.T01 MTR_1g019550 38.824 85 42 1 72 146 1190 1274 1.76e-11 61.2
MsG0680035158.01.T01 MTR_1g019550 56.000 75 29 1 72 146 778 848 2.62e-16 75.1
MsG0680035158.01.T01 MTR_1g019550 67.273 55 18 0 92 146 982 1036 1.21e-15 73.2
MsG0680035158.01.T01 MTR_1g019550 47.059 85 32 2 72 146 814 895 3.83e-14 68.9
MsG0680035158.01.T01 MTR_1g019550 58.182 55 23 0 92 146 747 801 1.03e-13 67.8
MsG0680035158.01.T01 MTR_1g019550 38.679 106 45 2 51 146 988 1083 1.45e-13 67.0
MsG0680035158.01.T01 MTR_1g019550 38.889 108 46 3 49 146 516 613 1.92e-13 67.0
MsG0680035158.01.T01 MTR_1g019550 58.182 55 23 0 92 146 606 660 1.99e-13 66.6
MsG0680035158.01.T01 MTR_1g019550 48.235 85 34 2 72 146 435 519 2.49e-13 66.6
MsG0680035158.01.T01 MTR_1g019550 40.566 106 43 3 51 146 847 942 1.02e-12 64.7
MsG0680035158.01.T01 MTR_1g019550 54.902 51 23 0 96 146 704 754 1.18e-12 64.7
MsG0680035158.01.T01 MTR_1g019550 49.333 75 34 1 72 146 637 707 2.94e-12 63.5
MsG0680035158.01.T01 MTR_1g019550 37.374 99 45 2 58 146 475 566 1.13e-11 61.6
MsG0680035158.01.T01 MTR_1g019550 38.824 85 42 1 72 146 1046 1130 2.35e-11 60.8
MsG0680035158.01.T01 MTR_6g079120 44.444 99 47 2 52 146 723 817 2.87e-16 75.1
MsG0680035158.01.T01 MTR_6g079120 55.882 68 26 1 79 146 707 770 2.97e-15 72.0
MsG0680035158.01.T01 MTR_6g079120 52.000 75 32 1 72 146 631 701 4.37e-15 71.6
MsG0680035158.01.T01 MTR_6g078930 58.824 68 24 1 79 146 1004 1067 7.90e-16 73.6
MsG0680035158.01.T01 MTR_6g078930 67.273 55 16 1 92 146 739 791 9.04e-16 73.6
MsG0680035158.01.T01 MTR_6g078930 58.824 68 24 1 79 146 797 860 2.09e-15 72.4
MsG0680035158.01.T01 MTR_6g078930 57.353 68 25 1 79 146 866 929 2.72e-15 72.0
MsG0680035158.01.T01 MTR_6g078930 44.186 86 38 1 71 146 1051 1136 6.18e-15 71.2
MsG0680035158.01.T01 MTR_6g078930 46.154 91 35 3 69 146 610 699 2.73e-14 69.3
MsG0680035158.01.T01 MTR_6g078930 54.167 72 29 1 75 146 931 998 1.69e-13 67.0
MsG0680035158.01.T01 MTR_6g078480 48.235 85 34 2 72 146 621 705 6.14e-15 71.2
MsG0680035158.01.T01 MTR_0007s0150 35.664 143 60 4 34 146 89 229 3.12e-14 68.9
MsG0680035158.01.T01 MTR_6g075880 44.706 85 37 2 72 146 623 707 5.70e-14 68.2
MsG0680035158.01.T01 MTR_8g075440 41.176 85 40 2 72 146 630 714 8.08e-14 67.8
MsG0680035158.01.T01 MTR_6g077500 44.706 85 37 2 72 146 636 720 1.10e-13 67.4
MsG0680035158.01.T01 MTR_6g072760 45.882 85 36 2 72 146 620 704 1.15e-13 67.4
MsG0680035158.01.T01 MTR_1g060030 40.698 86 41 2 71 146 458 543 8.88e-13 64.7
MsG0680035158.01.T01 MTR_0019s0100 44.444 90 39 3 68 146 633 722 9.88e-13 64.7
MsG0680035158.01.T01 MTR_6g008140 44.186 86 36 2 72 146 630 714 1.97e-12 63.9
MsG0680035158.01.T01 MTR_6g008140 44.186 86 36 2 72 146 806 890 1.99e-12 63.9
MsG0680035158.01.T01 MTR_6g008140 44.186 86 36 2 72 146 491 575 2.20e-12 63.5
MsG0680035158.01.T01 MTR_6g008140 44.186 86 36 2 72 146 524 608 2.29e-12 63.5
MsG0680035158.01.T01 MTR_6g008140 44.186 86 36 2 72 146 476 560 2.44e-12 63.5
MsG0680035158.01.T01 MTR_6g008140 44.186 86 36 2 72 146 491 575 2.54e-12 63.5
MsG0680035158.01.T01 MTR_8g039910 40.000 85 41 2 72 146 639 723 3.63e-12 63.2
MsG0680035158.01.T01 MTR_8g039870 40.000 85 41 2 72 146 639 723 3.63e-12 63.2
MsG0680035158.01.T01 MTR_6g083860 38.824 85 42 2 72 146 633 717 5.18e-12 62.8
MsG0680035158.01.T01 MTR_6g083860 38.824 85 42 2 72 146 621 705 5.27e-12 62.8
MsG0680035158.01.T01 MTR_6g072480 40.000 85 41 1 72 146 630 714 6.24e-12 62.4
MsG0680035158.01.T01 MTR_6g074620 40.000 85 41 2 72 146 630 714 7.99e-12 62.0
MsG0680035158.01.T01 MTR_6g478030 39.535 86 42 2 71 146 633 718 1.03e-11 62.0
MsG0680035158.01.T01 MTR_6g072450 39.286 84 41 2 73 146 616 699 1.37e-11 61.6
MsG0680035158.01.T01 MTR_4g051715 41.176 85 40 2 72 146 593 677 1.60e-11 61.2
MsG0680035158.01.T01 MTR_6g076090 40.230 87 42 2 70 146 627 713 1.71e-11 61.2
MsG0680035158.01.T01 MTR_4g016610 41.176 85 40 2 72 146 613 697 2.22e-11 60.8
MsG0680035158.01.T01 MTR_2g041070 37.647 85 43 2 72 146 617 701 2.31e-11 60.8
MsG0680035158.01.T01 MTR_2g041070 37.647 85 43 2 72 146 617 701 2.32e-11 60.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 31 sgRNAs with CRISPR-Local

Find 136 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTAAAACCATGAATGTTAG+AGG 0.307727 6:-99852670 MsG0680035158.01.T01:CDS
TTCTATGGATTCAGCAGTTA+AGG 0.311898 6:-99855103 None:intergenic
GATTTAAAACTCTCATATTC+CGG 0.344841 6:+99852931 None:intergenic
GGTACAACCTCTAACATTCA+TGG 0.376145 6:+99852663 None:intergenic
TTTGGGAGACCAGTTATATC+AGG 0.390158 6:+99852879 None:intergenic
CAACCTGTGGTAGATGGGTT+TGG 0.397940 6:-99852700 MsG0680035158.01.T01:CDS
TTAGAGGTTGTACCAATCTA+AGG 0.402749 6:-99852654 MsG0680035158.01.T01:CDS
TCCTCAACTGACTTCGGAAC+AGG 0.410181 6:+99854884 None:intergenic
GCACAAATACCTGATATAAC+TGG 0.430179 6:-99852888 MsG0680035158.01.T01:intron
TCCGAAGTCAGTTGAGGATT+CGG 0.442134 6:-99854879 MsG0680035158.01.T01:CDS
CTACTACAGCTACTGCTGTA+AGG 0.498767 6:-99855000 MsG0680035158.01.T01:CDS
TCTATGGATTCAGCAGTTAA+GGG 0.502002 6:-99855102 MsG0680035158.01.T01:CDS
CTGGATCTTTCAGATTGCAC+TGG 0.517090 6:-99852736 MsG0680035158.01.T01:intron
ACCGAATCCTCAACTGACTT+CGG 0.537713 6:+99854878 None:intergenic
AGGTGGAATACTCCTTAGAT+TGG 0.540855 6:+99852642 None:intergenic
TTCAGCAGTTAAGGGACAGA+GGG 0.542139 6:-99855094 MsG0680035158.01.T01:CDS
GAGAGCTGCTACTAAAATCC+CGG 0.550167 6:+99854910 None:intergenic
ACCTGTTCCGAAGTCAGTTG+AGG 0.561081 6:-99854885 MsG0680035158.01.T01:CDS
TACAGCTACTGCTGTAAGGA+AGG 0.562300 6:-99854996 MsG0680035158.01.T01:CDS
GAGTATTCCACCTCTCAAGT+TGG 0.564087 6:-99852632 MsG0680035158.01.T01:CDS
GCTACCAGAAAACCTCGATT+CGG 0.576023 6:+99854848 None:intergenic
TCAGTTGAGGATTCGGTCGG+TGG 0.578229 6:-99854872 MsG0680035158.01.T01:CDS
TCTAGTGAATCCAACTTGAG+AGG 0.600859 6:+99852622 None:intergenic
TCGGTCGGTGGTCCGAATCG+AGG 0.606490 6:-99854860 MsG0680035158.01.T01:CDS
GCAGTTAAGGGACAGAGGGA+AGG 0.606643 6:-99855090 MsG0680035158.01.T01:CDS
AAAGACTATAACAACATGAA+AGG 0.609297 6:+99852590 None:intergenic
AGTGAATCCAACTTGAGAGG+TGG 0.614389 6:+99852625 None:intergenic
TCACCAAACCCATCTACCAC+AGG 0.638494 6:+99852697 None:intergenic
AAGTCAGTTGAGGATTCGGT+CGG 0.654472 6:-99854875 MsG0680035158.01.T01:CDS
GGACAGAGGGAAGGTGACGA+AGG 0.667333 6:-99855081 MsG0680035158.01.T01:intron
ATTCAGCAGTTAAGGGACAG+AGG 0.701219 6:-99855095 MsG0680035158.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATAAACAAAAAAAAAAATTC+AGG + Chr6:99853167-99853186 None:intergenic 10.0%
!! ATATATGAATAATATTAAAC+CGG + Chr6:99854682-99854701 None:intergenic 10.0%
!! TATAAATTAAATTCATACAA+AGG + Chr6:99854069-99854088 None:intergenic 10.0%
!!! TTTACAATAAAAAAGTTTTA+AGG + Chr6:99853056-99853075 None:intergenic 10.0%
!! AAATCAATGAAATGAATATA+TGG + Chr6:99854395-99854414 None:intergenic 15.0%
!! ATTGAAAATTCTTATATGTT+TGG + Chr6:99854829-99854848 None:intergenic 15.0%
!! CAGTCAAAAAAAAAAAAAAA+TGG + Chr6:99853636-99853655 None:intergenic 15.0%
!! TTGAAAATTCTTATATGTTT+GGG + Chr6:99854828-99854847 None:intergenic 15.0%
!!! ATGTTTTTCTATTTTCATTT+TGG - Chr6:99854717-99854736 MsG0680035158.01.T01:intron 15.0%
!! AATAATTTCAATCACAAAAG+AGG - Chr6:99853381-99853400 MsG0680035158.01.T01:intron 20.0%
!! TTTAAAGATCTTTAAATACG+TGG - Chr6:99854332-99854351 MsG0680035158.01.T01:intron 20.0%
!!! AAACTTTTTTTGAACAGATA+TGG + Chr6:99854370-99854389 None:intergenic 20.0%
!!! ATTTGTCCTTTTTTGTTTAT+AGG - Chr6:99854411-99854430 MsG0680035158.01.T01:intron 20.0%
!!! GAAAATGTTCAATTTTCAAA+AGG - Chr6:99852715-99852734 MsG0680035158.01.T01:CDS 20.0%
!!! GTAATTGATTTCTTGATAAT+TGG - Chr6:99853215-99853234 MsG0680035158.01.T01:intron 20.0%
!!! TTTGTCCTTTTTTGTTTATA+GGG - Chr6:99854412-99854431 MsG0680035158.01.T01:intron 20.0%
! AAAGACTATAACAACATGAA+AGG + Chr6:99855100-99855119 None:intergenic 25.0%
! AATGTGAATGACTCTATATT+TGG - Chr6:99853349-99853368 MsG0680035158.01.T01:intron 25.0%
! CAAATAACAATCTTCATCAA+TGG - Chr6:99853315-99853334 MsG0680035158.01.T01:intron 25.0%
! GCTAATTGCAATTGATAAAT+CGG - Chr6:99854864-99854883 MsG0680035158.01.T01:CDS 25.0%
! TAAGACTAATTCAGTCTATT+TGG - Chr6:99852646-99852665 MsG0680035158.01.T01:CDS 25.0%
! TGATCTTATGTGAATAAATC+CGG - Chr6:99854660-99854679 MsG0680035158.01.T01:intron 25.0%
! TTGTTCCCTATAAACAAAAA+AGG + Chr6:99854420-99854439 None:intergenic 25.0%
!! ATTTTCAATTCAAAGTTGTG+AGG - Chr6:99854840-99854859 MsG0680035158.01.T01:intron 25.0%
!! GATTTAAAACTCTCATATTC+CGG + Chr6:99854759-99854778 None:intergenic 25.0%
!! TAAAGAACAGATTGAGATTT+TGG - Chr6:99853543-99853562 MsG0680035158.01.T01:intron 25.0%
!! TTTTCACAAAAGAATGAGTA+AGG + Chr6:99853265-99853284 None:intergenic 25.0%
!!! CTCATTTTTAGTAATGATGT+CGG - Chr6:99854495-99854514 MsG0680035158.01.T01:intron 25.0%
AAAACCAACATAGATCAAAC+TGG - Chr6:99853281-99853300 MsG0680035158.01.T01:intron 30.0%
AATAATGCAGAAAGCCAAAA+GGG + Chr6:99854011-99854030 None:intergenic 30.0%
ATTGCAATTGATAAATCGGT+TGG - Chr6:99854868-99854887 MsG0680035158.01.T01:CDS 30.0%
CTATCATAGTGATAGAAGAA+GGG - Chr6:99852941-99852960 MsG0680035158.01.T01:intron 30.0%
CTTAAAACCATGAATGTTAG+AGG - Chr6:99855017-99855036 MsG0680035158.01.T01:intron 30.0%
CTTGACACTGGAAATATAAA+AGG + Chr6:99853813-99853832 None:intergenic 30.0%
GTTGAATGATAAGCTATTTG+TGG - Chr6:99853908-99853927 MsG0680035158.01.T01:intron 30.0%
TAATAATGCAGAAAGCCAAA+AGG + Chr6:99854012-99854031 None:intergenic 30.0%
TATCATAGTGATAGAAGAAG+GGG - Chr6:99852942-99852961 MsG0680035158.01.T01:intron 30.0%
TCTATCATAGTGATAGAAGA+AGG - Chr6:99852940-99852959 MsG0680035158.01.T01:intron 30.0%
TGTCAAGAATGCATTAGATT+TGG - Chr6:99853826-99853845 MsG0680035158.01.T01:intron 30.0%
TTCTATCACTATGATAGAGA+CGG + Chr6:99852938-99852957 None:intergenic 30.0%
! AAATCATACTTTTCGACTGT+CGG - Chr6:99854449-99854468 MsG0680035158.01.T01:intron 30.0%
! ATTGGTTTCTCCAAACAAAT+AGG - Chr6:99853233-99853252 MsG0680035158.01.T01:intron 30.0%
! CTGATACTCTAAAAGAACAA+AGG + Chr6:99853665-99853684 None:intergenic 30.0%
! TCAAATGGATTTGATGAAGA+TGG + Chr6:99854594-99854613 None:intergenic 30.0%
! TTAATACTAGAGTTCCCTTT+TGG - Chr6:99853994-99854013 MsG0680035158.01.T01:intron 30.0%
!! TTAGAGTATCAGTCTCTTTT+AGG - Chr6:99853673-99853692 MsG0680035158.01.T01:intron 30.0%
!!! GATAAATCGGTTGGTTTTTT+AGG - Chr6:99854877-99854896 MsG0680035158.01.T01:CDS 30.0%
AACGTCGAATCATCATAAGT+TGG + Chr6:99852983-99853002 None:intergenic 35.0%
ACTAATCTTGTCCTCCAAAT+AGG - Chr6:99853514-99853533 MsG0680035158.01.T01:intron 35.0%
ATAAATCCCTTCCACTCAAA+TGG + Chr6:99854609-99854628 None:intergenic 35.0%
ATCAAATCCATTTGAGTGGA+AGG - Chr6:99854599-99854618 MsG0680035158.01.T01:intron 35.0%
ATCTAATGCATTCTTGACAC+TGG + Chr6:99853825-99853844 None:intergenic 35.0%
ATCTTCATCAATGGTGTAAC+TGG - Chr6:99853324-99853343 MsG0680035158.01.T01:intron 35.0%
ATTTCAGCACTCTGAGTATT+TGG + Chr6:99854546-99854565 None:intergenic 35.0%
CTTCATCAAATCCATTTGAG+TGG - Chr6:99854595-99854614 MsG0680035158.01.T01:intron 35.0%
GCACAAATACCTGATATAAC+TGG - Chr6:99854799-99854818 MsG0680035158.01.T01:intron 35.0%
GGAACTCTAGTATTAACAAC+AGG + Chr6:99853990-99854009 None:intergenic 35.0%
TAACTGATGTGACAACACAT+CGG - Chr6:99854250-99854269 MsG0680035158.01.T01:intron 35.0%
TCAAATCCATTTGAGTGGAA+GGG - Chr6:99854600-99854619 MsG0680035158.01.T01:intron 35.0%
TGAAGATGGAAATCTGATGA+AGG + Chr6:99854580-99854599 None:intergenic 35.0%
TGAGTATTTGGAAGCTGTTT+GGG + Chr6:99854534-99854553 None:intergenic 35.0%
TTAGAGGTTGTACCAATCTA+AGG - Chr6:99855033-99855052 MsG0680035158.01.T01:intron 35.0%
TTATACATTGCGCTCAAATC+TGG - Chr6:99854919-99854938 MsG0680035158.01.T01:CDS 35.0%
! AATCATACTTTTCGACTGTC+GGG - Chr6:99854450-99854469 MsG0680035158.01.T01:intron 35.0%
! ATTGCATGGTATTTGTTGGT+TGG - Chr6:99853961-99853980 MsG0680035158.01.T01:intron 35.0%
! GTTCTTTAGCTTCTCCTATT+TGG + Chr6:99853531-99853550 None:intergenic 35.0%
!! TCAAATCTGGAGTTTTCTAC+TGG - Chr6:99854932-99854951 MsG0680035158.01.T01:CDS 35.0%
AAAAGAGGAGCTCTCACAAA+AGG - Chr6:99853396-99853415 MsG0680035158.01.T01:intron 40.0%
AAGGTTCTCGCCTATTTGTT+TGG + Chr6:99853246-99853265 None:intergenic 40.0%
AGGTGGAATACTCCTTAGAT+TGG + Chr6:99855048-99855067 None:intergenic 40.0%
CAACATAGATCAAACTGGTC+TGG - Chr6:99853286-99853305 MsG0680035158.01.T01:intron 40.0%
CAACTGTTGTTGCAAAAACC+GGG - Chr6:99852759-99852778 MsG0680035158.01.T01:intron 40.0%
CAGACCAGTTTGATCTATGT+TGG + Chr6:99853288-99853307 None:intergenic 40.0%
CTGAGTATTTGGAAGCTGTT+TGG + Chr6:99854535-99854554 None:intergenic 40.0%
CTGCATTGCATGGTATTTGT+TGG - Chr6:99853957-99853976 MsG0680035158.01.T01:intron 40.0%
CTTCTCAGCAATGTGATCAA+AGG - Chr6:99853866-99853885 MsG0680035158.01.T01:intron 40.0%
CTTCTGTAGACACTATGTAC+TGG - Chr6:99853605-99853624 MsG0680035158.01.T01:intron 40.0%
GATCAAAGGAGATGAGTGAA+AGG - Chr6:99853880-99853899 MsG0680035158.01.T01:intron 40.0%
GCAACTGTTGTTGCAAAAAC+CGG - Chr6:99852758-99852777 MsG0680035158.01.T01:intron 40.0%
GGATTTATGACAAAGGCAAG+TGG - Chr6:99854621-99854640 MsG0680035158.01.T01:intron 40.0%
GGTACAACCTCTAACATTCA+TGG + Chr6:99855027-99855046 None:intergenic 40.0%
GTGGAAGGGATTTATGACAA+AGG - Chr6:99854614-99854633 MsG0680035158.01.T01:intron 40.0%
TCGTGTACTTAGCAGTTTGA+TGG - Chr6:99853716-99853735 MsG0680035158.01.T01:intron 40.0%
TCTAGTGAATCCAACTTGAG+AGG + Chr6:99855068-99855087 None:intergenic 40.0%
TGACGAAGGTAATCCTACTA+CGG - Chr6:99852620-99852639 MsG0680035158.01.T01:CDS 40.0%
TGTTAATGCTCTGCATTGCA+TGG - Chr6:99853947-99853966 MsG0680035158.01.T01:intron 40.0%
TTTGGGAGACCAGTTATATC+AGG + Chr6:99854811-99854830 None:intergenic 40.0%
! AGTGGATTTAGTCCTGAATC+TGG - Chr6:99852864-99852883 MsG0680035158.01.T01:intron 40.0%
! AGTTTTCAACCTGTGGTAGA+TGG - Chr6:99854981-99855000 MsG0680035158.01.T01:CDS 40.0%
! CTTTAGCTTCTCCTATTTGG+AGG + Chr6:99853528-99853547 None:intergenic 40.0%
! GTTTTCAACCTGTGGTAGAT+GGG - Chr6:99854982-99855001 MsG0680035158.01.T01:CDS 40.0%
! TAAGTTGGAGTGATGAATCC+TGG + Chr6:99852968-99852987 None:intergenic 40.0%
! TCTTGAGAGTTTTCAACCTG+TGG - Chr6:99854974-99854993 MsG0680035158.01.T01:CDS 40.0%
! TGTAGACACTATGTACTGGT+GGG - Chr6:99853609-99853628 MsG0680035158.01.T01:intron 40.0%
!! ATTAGTCTTAGTGCCGTAGT+AGG + Chr6:99852636-99852655 None:intergenic 40.0%
!!! TGGTTTTGTTGCAGAAGTTC+CGG - Chr6:99854737-99854756 MsG0680035158.01.T01:intron 40.0%
ACCTTCTTGCAAATCCAGTC+TGG + Chr6:99853580-99853599 None:intergenic 45.0%
AGACTGGATTTGCAAGAAGG+TGG - Chr6:99853579-99853598 MsG0680035158.01.T01:intron 45.0%
AGATGCGAAGTGTGGAAGTA+AGG + Chr6:99853129-99853148 None:intergenic 45.0%
AGTAGCTGTAGTAGTAGCTG+TGG + Chr6:99852681-99852700 None:intergenic 45.0%
AGTGAATCCAACTTGAGAGG+TGG + Chr6:99855065-99855084 None:intergenic 45.0%
ATCACATTGCTGAGAAGCCT+CGG + Chr6:99853863-99853882 None:intergenic 45.0%
ATTCAGCAGTTAAGGGACAG+AGG - Chr6:99852592-99852611 MsG0680035158.01.T01:CDS 45.0%
CTACTACAGCTACTGCTGTA+AGG - Chr6:99852687-99852706 MsG0680035158.01.T01:CDS 45.0%
CTGGATCTTTCAGATTGCAC+TGG - Chr6:99854951-99854970 MsG0680035158.01.T01:CDS 45.0%
CTGTAGACACTATGTACTGG+TGG - Chr6:99853608-99853627 MsG0680035158.01.T01:intron 45.0%
GAGAGCTGCTACTAAAATCC+CGG + Chr6:99852780-99852799 None:intergenic 45.0%
GAGTATTCCACCTCTCAAGT+TGG - Chr6:99855055-99855074 MsG0680035158.01.T01:intron 45.0%
GATGCGAAGTGTGGAAGTAA+GGG + Chr6:99853128-99853147 None:intergenic 45.0%
GCTACCAGAAAACCTCGATT+CGG + Chr6:99852842-99852861 None:intergenic 45.0%
GTAGCTGTAGTAGTAGCTGT+GGG + Chr6:99852680-99852699 None:intergenic 45.0%
TACAGCTACTGCTGTAAGGA+AGG - Chr6:99852691-99852710 MsG0680035158.01.T01:CDS 45.0%
TCCGAAGTCAGTTGAGGATT+CGG - Chr6:99852808-99852827 MsG0680035158.01.T01:intron 45.0%
TGGAAAAGATTGTGCCAGAC+TGG - Chr6:99853563-99853582 MsG0680035158.01.T01:intron 45.0%
TTCAGCAGTTAAGGGACAGA+GGG - Chr6:99852593-99852612 MsG0680035158.01.T01:CDS 45.0%
! AAGTCAGTTGAGGATTCGGT+CGG - Chr6:99852812-99852831 MsG0680035158.01.T01:intron 45.0%
! ACCGAATCCTCAACTGACTT+CGG + Chr6:99852812-99852831 None:intergenic 45.0%
! TCAAGAGAGCGTGACGAATA+GGG + Chr6:99852902-99852921 None:intergenic 45.0%
ACCAAAGCTGCACCAGATTC+AGG + Chr6:99852879-99852898 None:intergenic 50.0%
ACCTGTTCCGAAGTCAGTTG+AGG - Chr6:99852802-99852821 MsG0680035158.01.T01:intron 50.0%
ATTCGTCACGCTCTCTTGAG+TGG - Chr6:99852903-99852922 MsG0680035158.01.T01:CDS 50.0%
ATTTGGACTCAGTTCGACCG+AGG - Chr6:99853843-99853862 MsG0680035158.01.T01:intron 50.0%
GCCAGACTGGATTTGCAAGA+AGG - Chr6:99853576-99853595 MsG0680035158.01.T01:intron 50.0%
TAGTGATAGAAGAAGGGGCC+AGG - Chr6:99852947-99852966 MsG0680035158.01.T01:intron 50.0%
TCACCAAACCCATCTACCAC+AGG + Chr6:99854993-99855012 None:intergenic 50.0%
TCCTGAATCTGGTGCAGCTT+TGG - Chr6:99852875-99852894 MsG0680035158.01.T01:intron 50.0%
TGTCGATCAGATGCGAAGTG+TGG + Chr6:99853137-99853156 None:intergenic 50.0%
! CAACCTGTGGTAGATGGGTT+TGG - Chr6:99854987-99855006 MsG0680035158.01.T01:CDS 50.0%
! CTCAAGAGAGCGTGACGAAT+AGG + Chr6:99852903-99852922 None:intergenic 50.0%
! TCCTCAACTGACTTCGGAAC+AGG + Chr6:99852806-99852825 None:intergenic 50.0%
! TGGTCCGAATCGAGGTTTTC+TGG - Chr6:99852835-99852854 MsG0680035158.01.T01:intron 50.0%
GCAGTTAAGGGACAGAGGGA+AGG - Chr6:99852597-99852616 MsG0680035158.01.T01:CDS 55.0%
! TCAGTTGAGGATTCGGTCGG+TGG - Chr6:99852815-99852834 MsG0680035158.01.T01:intron 55.0%
!! GAGGTTTTCTGGTAGCGCAG+TGG - Chr6:99852846-99852865 MsG0680035158.01.T01:intron 55.0%
GGACAGAGGGAAGGTGACGA+AGG - Chr6:99852606-99852625 MsG0680035158.01.T01:CDS 60.0%
TCGGTCGGTGGTCCGAATCG+AGG - Chr6:99852827-99852846 MsG0680035158.01.T01:intron 65.0%
Chromosome Type Strat End Strand Name
Chr6 gene 99852588 99855121 99852588 ID=MsG0680035158.01;Name=MsG0680035158.01
Chr6 mRNA 99852588 99855121 99852588 ID=MsG0680035158.01.T01;Parent=MsG0680035158.01;Name=MsG0680035158.01.T01;_AED=0.74;_eAED=0.74;_QI=0|0|0|0.5|1|1|4|0|146
Chr6 exon 99855082 99855121 99855082 ID=MsG0680035158.01.T01:exon:10112;Parent=MsG0680035158.01.T01
Chr6 exon 99854853 99855025 99854853 ID=MsG0680035158.01.T01:exon:10111;Parent=MsG0680035158.01.T01
Chr6 exon 99852889 99852958 99852889 ID=MsG0680035158.01.T01:exon:10110;Parent=MsG0680035158.01.T01
Chr6 exon 99852588 99852745 99852588 ID=MsG0680035158.01.T01:exon:10109;Parent=MsG0680035158.01.T01
Chr6 CDS 99855082 99855121 99855082 ID=MsG0680035158.01.T01:cds;Parent=MsG0680035158.01.T01
Chr6 CDS 99854853 99855025 99854853 ID=MsG0680035158.01.T01:cds;Parent=MsG0680035158.01.T01
Chr6 CDS 99852889 99852958 99852889 ID=MsG0680035158.01.T01:cds;Parent=MsG0680035158.01.T01
Chr6 CDS 99852588 99852745 99852588 ID=MsG0680035158.01.T01:cds;Parent=MsG0680035158.01.T01
Gene Sequence

>MsG0680035158.01.T01

ATGGATTCAGCAGTTAAGGGACAGAGGGAAGGTGACGAAGCTACTACTACAGCTACTGCTGTAAGGAAGGCGAAAATGTTCAATTTTCAAAAGGTCTTCTTGACTCTTATTCGCGCAACTGTTGTTGCAAAAACCGGGATTTTAGTAGCAGCTCTCGAACCTGTTCCGAAGTCAGTTGAGGATTCGGTCGGTGGTCCGAATCGAGGTTTTCTGAAGTTCCGGAATATGAGAGTTTTAAATCTTGATAATAGTGATCTTTTAGCACAAATACCTGATATAACTGATTGCACTGGTCTTGAGAGTTTTCAACCTGTGGTAGATGGGTTTGGTGATAAGCTTAAAACCATGAATGTTAGAGGTTGTACCAATCTAAGGAGTATTCCACCTCTCAAGTTGGATTCACTAGAAACACTTGACCTTTCATGTTGTTATAGTCTTTAG
Protein sequence

>MsG0680035158.01.T01

MDSAVKGQREGDEATTTATAVRKAKMFNFQKVFLTLIRATVVAKTGILVAALEPVPKSVEDSVGGPNRGFLKFRNMRVLNLDNSDLLAQIPDITDCTGLESFQPVVDGFGDKLKTMNVRGCTNLRSIPPLKLDSLETLDLSCCYSL*