AlfalfaGEDB | MsG0680035217.01

M. sativa cultivar ZhongmuNo.1 / MsG0680035217.01

KEGG: -
GO: GO:0005515
PFAM: PF01535 PF12854 PF13041

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0680035217.01.T01	XP_039682971.1	59.876	1129	414	8	30	1135	7	1119	0	1366

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0680035217.01.T01	P0C7Q7	40.278	504	301	0	630	1133	70	573	1.27E-132	419

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0680035217.01.T01	A0A6P5NXP0	54.260	1115	467	6	61	1135	48	1159	0.0	1228

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0680035031.01	MsG0680035217.01	0.841642	4.198665e-58	6.208535e-55
MsG0680035216.01	MsG0680035217.01	0.805828	1.105585e-49	5.908125e-47
MsG0680035217.01	MsG0680035580.01	0.801083	1.064194e-48	5.037181e-46

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0680035217.01.T01	MTR_6g065540	81.633	539	98	1	597	1135	20	557	0.0	897
MsG0680035217.01.T01	MTR_6g065540	76.690	562	123	3	5	566	4	557	0.0	860
MsG0680035217.01.T01	MTR_6g077540	80.874	549	93	3	597	1135	24	570	0.0	888
MsG0680035217.01.T01	MTR_6g077540	75.709	564	129	3	9	566	9	570	0.0	840
MsG0680035217.01.T01	MTR_6g079920	76.554	563	116	3	582	1134	15	571	0.0	871
MsG0680035217.01.T01	MTR_6g079920	73.636	550	138	2	22	565	23	571	0.0	808
MsG0680035217.01.T01	MTR_6g079920	26.667	570	370	4	428	995	49	572	8.29e-63	225
MsG0680035217.01.T01	MTR_6g079920	25.505	545	362	3	235	779	66	566	1.57e-59	216
MsG0680035217.01.T01	MTR_6g079920	29.351	385	272	0	79	463	190	574	7.13e-58	211
MsG0680035217.01.T01	MTR_6g079920	30.518	367	255	0	62	428	208	574	1.38e-50	189

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0680035217.01.T01	AT1G12700	40.278	504	301	0	630	1133	70	573	1.30e-133	419
MsG0680035217.01.T01	AT1G12700	37.200	500	314	0	61	560	70	569	3.22e-121	386
MsG0680035217.01.T01	AT1G12700	25.321	545	390	4	236	776	70	601	3.66e-61	221
MsG0680035217.01.T01	AT1G12700	24.021	562	381	4	413	973	72	588	1.90e-56	207
MsG0680035217.01.T01	AT1G12700	29.714	350	246	0	786	1135	86	435	7.49e-51	191
MsG0680035217.01.T01	AT1G12700	27.628	333	206	1	838	1135	68	400	3.93e-37	149
MsG0680035217.01.T01	AT1G12700	28.358	201	143	1	934	1134	60	259	6.28e-17	86.3
MsG0680035217.01.T01	AT1G12700	40.278	504	301	0	630	1133	86	589	1.59e-133	419
MsG0680035217.01.T01	AT1G12700	37.200	500	314	0	61	560	86	585	4.05e-121	387
MsG0680035217.01.T01	AT1G12700	25.321	545	390	4	236	776	86	617	6.22e-61	221

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Find 198 sgRNAs with CRISPR-Local

Find 579 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AACAACAGTGGAGAAATGAT+TGG	0.486670	6:-100705284	None:intergenic
AACATTGAAGAAGAAGAAGA+AGG	0.548287	6:-100705016	None:intergenic
AACATTGAATACACTCATCA+AGG	0.464775	6:+100712355	MsG0680035217.01.T01:CDS
AACATTGACTACACTCATCA+AGG	0.480737	6:+100705459	MsG0680035217.01.T01:CDS
AACTCGTCGGAGCAATTCAA+GGG	0.605482	6:-100712513	None:intergenic
AAGAACGGTGTGGTAATGTT+TGG	0.387551	6:-100712180	None:intergenic
AATAAGGAATGAAATAGAAA+TGG	0.367312	6:-100712022	None:intergenic
AATCTTACCGAATTCGATGT+TGG	0.497718	6:-100705242	None:intergenic
AATCTTATTGAATTCGATTG+CGG	0.523131	6:-100712138	None:intergenic
AATTACTTACAGTTCTATAT+TGG	0.258088	6:+100706296	MsG0680035217.01.T01:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAATTTACTCCTTTCGAAG+TGG	-	Chr6:100709860-100709879	None:intergenic	30.0%
AAAGCAGGTGACAAAAAATA+TGG	-	Chr6:100708416-100708435	None:intergenic	30.0%
AAATCTCTAAACTCCCAATT+TGG	+	Chr6:100709786-100709805	MsG0680035217.01.T01:intron	30.0%
AAATTGGGAAAAGGGAAAAA+AGG	+	Chr6:100708799-100708818	MsG0680035217.01.T01:intron	30.0%
AACATTGAAGAAGAAGAAGA+AGG	-	Chr6:100705019-100705038	None:intergenic	30.0%
AACATTGAATACACTCATCA+AGG	+	Chr6:100712355-100712374	MsG0680035217.01.T01:CDS	30.0%
AACCAAAGAAAATTGGGAAA+AGG	+	Chr6:100708790-100708809	MsG0680035217.01.T01:intron	30.0%
AATAATGCTGGTATTACACT+TGG	-	Chr6:100711321-100711340	None:intergenic	30.0%
AATAGTGATCTGTAAAGTCT+AGG	+	Chr6:100706957-100706976	MsG0680035217.01.T01:intron	30.0%
AATCTATGTTACTGCTTCAA+AGG	+	Chr6:100708136-100708155	MsG0680035217.01.T01:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
Chr6	gene	100705010	100713606	100705010	ID=MsG0680035217.01;Name=MsG0680035217.01
Chr6	mRNA	100705010	100713606	100705010	ID=MsG0680035217.01.T01;Parent=MsG0680035217.01;Name=MsG0680035217.01.T01;_AED=0.39;_eAED=0.39;_QI=0\|0\|0\|0.66\|1\|1\|3\|0\|1135
Chr6	exon	100705010	100706706	100705010	ID=MsG0680035217.01.T01:exon:20642;Parent=MsG0680035217.01.T01
Chr6	exon	100709469	100709565	100709469	ID=MsG0680035217.01.T01:exon:20643;Parent=MsG0680035217.01.T01
Chr6	exon	100711993	100713606	100711993	ID=MsG0680035217.01.T01:exon:20644;Parent=MsG0680035217.01.T01
Chr6	CDS	100705010	100706706	100705010	ID=MsG0680035217.01.T01:cds;Parent=MsG0680035217.01.T01
Chr6	CDS	100709469	100709565	100709469	ID=MsG0680035217.01.T01:cds;Parent=MsG0680035217.01.T01
Chr6	CDS	100711993	100713606	100711993	ID=MsG0680035217.01.T01:cds;Parent=MsG0680035217.01.T01

Gene Sequence

>MsG0680035217.01.T01

ATGTCTCCTTCTTCTTCTTCTTCAATGTTTCTGGGGTGCTTTGTTGATCGTTTTTCTCTCTCTGTTCCAAAAAAGTTTCATCCTTTTCGATTCCGAAAATACCCCTACTTCATTCCTTCGTTCTGCTTCTCCTCTTCTTCAACCTTATTCCCTCAATTCCATAACAACAATGATGTCGTTGATGCTTCTTTATCCAAGTTCAATCGCTTGCTATCTCAGAATCCCACTCCTCCCAACATCGAATTCGGTAAGATTTTAGGTTGTCTTGTCAAATCCAATCATTTCTCCACTGTTGTTTCCCTTTCTCAAAAAATGGAATTTATAGGAATTAAACCTGACTTAGTCAATTGCAGCATCCTCATCAATTCTTTCTGTCAATTGGGTCACATCCCTTTTGCTTTTTCTGTTTTCGCAAAGATTCTCAAAATGGGTCATCACCCGAATACTATAACATTGACTACACTCATCAAGGGTCTCTGTCTCAAAGGTGACATCCATCAAGCATTGCACTTACATGACAAGCTGGTAGCGCTTGGATTTCGTTTTAACCACGTTAGTTATGGTACCTTGATAAATGGGTTGTGTAAAGCTGGACAAACAAGCGCTGCTTTACAATTGTTGAGACGAGTTGATGGGAAATTGGTGCAACCTGATGTGGTAATGTACAACACCATTATTCATAGCATGTGCAAAGGTAAACTTATTAATGATGCTTTTGATTTATATTCTGAAATGGTTTCTAAGAGAATTTTCCCCGATGTTTTCACTTACAATGCTTTAATTAGTGGATTTTGCATTGTTGGTAAAATGAAAGATGCAATTGGTTTGTTCAATAAAATGACATTGGAAAACATCAACCCTGATGTGTATACCTTTAATATATTGGTTGATGCATTTTGTAAGGAAGGAAGGGTAAAAGAGGCTAAAAATGTGTTAGCTATGATGATGAAGCAAGGCATTAAACCCGATGTTGTTACTTATAACTCTTTAATGGATGGATATTTCCTAGTTAAAGAAGTGAATAAGGCTAAGAGTATATTCAACACTATGGCTCGGGGGGGAGTGAATCCTGATATTCAGAGTTACAGTATCTTGATTAATGGGTTTTGTAAGATTAAAATGGCGAATGAAGCCATGAATCTCTTTGAAGAAATGCATTGCAGAAAAATTATTCCTAATGTGGTAACTTACAATTCCCTTATTGATGGTTTGTGTAAATCGGGGAAAATCTCTTATGCTTTGAAGCTTGTCGATGAGATGCACGATAGAGGTCAACCACCTAATATAATTACTTACAGTTCTATATTGGATGCTTTGTGCAAAAACCATCAGGTTGACAAGGCAATTGCGTTGTTAACAAAGATGAAAGACCACGGTATTCAACCAAATATGTGTACATACACTATTCTTATTGATGGATTGTGTAAAGGTGGAAGACTAGAGGATGCACGGAATATTTTTGAGGATCTTTTGGTCAAAGGCTATAATATTACTGTCAACGCATATACCGTTATGATCCATGGGTTTTGTAGCAAGGGCTTGTTTGATGAAGCATTGGCTTTGTTGTCAAAAATGAAAGACAATAGTTGCTTTCCAAATGCCGTAACTTATGAAATAATCATCCGTTCTCTGTTTGATAACGATGAAAATGATAAGGCGGAGAATCTTCTTCGTGAAATGATTATGAGAGGCCTATTGATCGTTCTCGGTGCTGAGATTGAATCTCAAGTTGAGATATCATCTTGTGTTGTAGATGATCGTTCTCAAACATATATTGTTTGGGGTGGTCGCACGTTTCGTCATTTTCAATTTCTGAAAAACACCCATTTCTATTTCATTCCTTATTCTTCAATTTCAACCACATTCCATAATAACAATGATGTTGATGATGATGCTGTTTCTATGTTCAATCGTTTGCTCCGTAAGAATCCCACTCCACCCGCAATCGAATTCAATAAGATTTTAGGTTCCCTTGTAAAATCCAAACATTACCACACCGTTCTTTCTCTTTTTCAAAAAATGGAATTTAGAGGAATTAAACCTAACTTAGTCAATTGCAACATCCTCATCAATTGTTTCTGTCAAATGGGTCTTATCTCTTTTGCTTTTTCTGTATTCACAAAGATTCTCAAAAGCGGTTACGAGCCAGATACAATAACATTGAATACACTCATCAAGGGTCTCTGTCTCAAAGGTGACATCCATCAAGCATTGCACTTTCATGACAAGCTGGTAGCGCTTGGATTTCGTTTGAACCAAGTTAGTTATGGGACCTTGATTAATGGCTTGTGTAAAGTTGGTGAAACAAGAGCAGCCCTTGAATTGCTCCGACGAGTTGATGGGAAATTGGTTCGGCCTGATGTGGTAATGTACAGTACGATTATTGATAGTATGTGCAAAGTTAAACTTGTTAATGATGCTTTTGATTTATATTCTGAAATGGTTTCTAAGAGAATTTCTCCTGATGTTGTTACTTACAGTGCTTTAATTAGTGGCTTTTGCATTGCTGGTAAAATGAAAGATGCAATTTATTTGTTTAATAAAATGATATTGGAAAACATCAACCCAAATGTGTATACTTTCAATATATTGGTTGATGGTTTTTGTAAGGAAGGAAGGGTGAAAGAAGCTAAAAATGTGTTAGCTATGATGATGAAACAAGGCATTAAACCTGATGTTGTTACTTATAGCGCTTTAATGGATGGATATTGCCTAGTTAAAGAAGTGAATAAGGCTAAGAGTATATTCAACAATATGGTTCAGGAGGGAGTGAATCCTGCTATTCAAAGTTACAATATCTTGATTAATGGGTTTTGCAAGATTAAAAAGGTCGATGTAGCCATGAATCTCTTTGAAGAAATGCATTGTAGAAAACTAATTCCTGATGTGGTAACTTACAGTTCCCTTATTGATGGTTTGTGTAAATCGGGGAAAATCTCTTATGCTTTGAAGCTAGTCGATGAGATGCATGATCGAGGTGTACCACCTGATATAATTACTTACAGTTCTATATTGGATGCTTTATGCAAAAACCATCAGGTTGACAAGGCAATTGCGTTATTAACAAAGTTGAAAGACGAAGGAATTCAGCCAGATATTTGTACATACACAACACTTGTTGATGGACTATGCAAAAATGGAAGACTAGAGGATGCACGCAATATTTTTGAGGATCTTTTGGTCAAAGGCTATAATATAACTGTCAACACATATACCGTTATGATTCAAGGGTTTTGTAACAACGGCTTGTTTGATGAAGCATTGTCTATGTTGTCAAAAATGAAAGACAATAGTTGCATTCCAAACGCCGTAACTTATGAAATAATCATCTGTTCTCTGTTTGATAAAGATGAAAATGATAAGGCGGAGAAACTTCTTCGTGAAATGATTACAAGAGGTCTATTGTAA

Protein sequence

>MsG0680035217.01.T01

MSPSSSSSMFLGCFVDRFSLSVPKKFHPFRFRKYPYFIPSFCFSSSSTLFPQFHNNNDVVDASLSKFNRLLSQNPTPPNIEFGKILGCLVKSNHFSTVVSLSQKMEFIGIKPDLVNCSILINSFCQLGHIPFAFSVFAKILKMGHHPNTITLTTLIKGLCLKGDIHQALHLHDKLVALGFRFNHVSYGTLINGLCKAGQTSAALQLLRRVDGKLVQPDVVMYNTIIHSMCKGKLINDAFDLYSEMVSKRIFPDVFTYNALISGFCIVGKMKDAIGLFNKMTLENINPDVYTFNILVDAFCKEGRVKEAKNVLAMMMKQGIKPDVVTYNSLMDGYFLVKEVNKAKSIFNTMARGGVNPDIQSYSILINGFCKIKMANEAMNLFEEMHCRKIIPNVVTYNSLIDGLCKSGKISYALKLVDEMHDRGQPPNIITYSSILDALCKNHQVDKAIALLTKMKDHGIQPNMCTYTILIDGLCKGGRLEDARNIFEDLLVKGYNITVNAYTVMIHGFCSKGLFDEALALLSKMKDNSCFPNAVTYEIIIRSLFDNDENDKAENLLREMIMRGLLIVLGAEIESQVEISSCVVDDRSQTYIVWGGRTFRHFQFLKNTHFYFIPYSSISTTFHNNNDVDDDAVSMFNRLLRKNPTPPAIEFNKILGSLVKSKHYHTVLSLFQKMEFRGIKPNLVNCNILINCFCQMGLISFAFSVFTKILKSGYEPDTITLNTLIKGLCLKGDIHQALHFHDKLVALGFRLNQVSYGTLINGLCKVGETRAALELLRRVDGKLVRPDVVMYSTIIDSMCKVKLVNDAFDLYSEMVSKRISPDVVTYSALISGFCIAGKMKDAIYLFNKMILENINPNVYTFNILVDGFCKEGRVKEAKNVLAMMMKQGIKPDVVTYSALMDGYCLVKEVNKAKSIFNNMVQEGVNPAIQSYNILINGFCKIKKVDVAMNLFEEMHCRKLIPDVVTYSSLIDGLCKSGKISYALKLVDEMHDRGVPPDIITYSSILDALCKNHQVDKAIALLTKLKDEGIQPDICTYTTLVDGLCKNGRLEDARNIFEDLLVKGYNITVNTYTVMIQGFCNNGLFDEALSMLSKMKDNSCIPNAVTYEIIICSLFDKDENDKAEKLLREMITRGLL*