AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0680035239.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0680035239.01.T01 MTR_6g079520 64.232 397 74 8 40 374 38 428 8.25e-140 409
MsG0680035239.01.T01 MTR_8g106980 41.156 294 72 15 44 322 27 234 2.21e-32 126
MsG0680035239.01.T01 MTR_3g065570 49.254 67 31 2 45 111 14 77 9.79e-12 63.5
MsG0680035239.01.T01 MTR_5g078330 34.101 217 85 11 45 238 13 194 2.51e-11 62.8
MsG0680035239.01.T01 MTR_1g080700 44.286 70 36 1 42 111 21 87 9.43e-11 60.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0680035239.01.T01 AT3G18035 40.000 205 80 8 41 216 62 252 1.12e-23 102
MsG0680035239.01.T01 AT3G18035 40.000 205 80 8 41 216 62 252 2.10e-23 100
MsG0680035239.01.T01 AT1G48620 34.393 346 147 19 12 320 47 349 3.37e-18 86.3

Find 142 sgRNAs with CRISPR-Local

Find 299 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTTGAGGGGTTGGGGCTTTC+TGG -0.059819 6:-100940615 None:intergenic
ATGAAATGAAATGAATAATT+AGG 0.172274 6:-100940052 None:intergenic
GGGCTTGGGTTTGAGGGGTT+GGG 0.175798 6:-100940624 None:intergenic
TGGGCTTGGGCTTGGGTTTG+AGG 0.178796 6:-100940631 None:intergenic
TGGGCTTGGGTTTGAGGGGT+TGG 0.221830 6:-100940625 None:intergenic
ACTGCTGGTGGTGTTGTTTC+GGG 0.235709 6:+100941050 MsG0680035239.01.T01:CDS
AACAGCATCACATTCTTTCT+TGG 0.241219 6:-100941218 None:intergenic
AAGACCGGGCCGTCCTAAAA+AGG 0.242861 6:+100940857 MsG0680035239.01.T01:CDS
CAAAGTTGGTGTTGTTATCT+TGG 0.249676 6:-100940651 None:intergenic
TGTTATCTTGGGCTTGGGCT+TGG 0.260943 6:-100940639 None:intergenic
GGCTTGGGTTTGAGGGGTTG+GGG 0.263730 6:-100940623 None:intergenic
TACTGCTGGTGGTGTTGTTT+CGG 0.264432 6:+100941049 MsG0680035239.01.T01:CDS
ATGCTTCTGCTGAGCCTGTT+TGG 0.266446 6:+100940766 MsG0680035239.01.T01:CDS
GTGGTTGAAGAGGTGGTTGT+TGG 0.284981 6:-100940172 None:intergenic
TTGAGGGGTTGGGGCTTTCT+GGG 0.287975 6:-100940614 None:intergenic
GAGCCTGTTTGGGCCGCACT+TGG 0.300045 6:+100940777 MsG0680035239.01.T01:CDS
TGCTTCTGCTGAGCCTGTTT+GGG 0.305256 6:+100940767 MsG0680035239.01.T01:CDS
GTTATCTTGGGCTTGGGCTT+GGG 0.317254 6:-100940638 None:intergenic
AAACTCTCCGGCTGAATCTT+TGG 0.326538 6:-100941005 None:intergenic
CGGCGAAGGGGAACGGTGTT+GGG 0.326905 6:-100940143 None:intergenic
GGAGGTAATGGGGTGGATCT+AGG 0.330096 6:-100940542 None:intergenic
GAGAGTTTCACTCCGGCTTC+TGG 0.331162 6:+100941020 MsG0680035239.01.T01:CDS
AAACCGGACCACCTTGAATT+GGG 0.338864 6:-100940902 None:intergenic
TGGTGTTGTTATCTTGGGCT+TGG 0.348435 6:-100940645 None:intergenic
GAAACCGGACCACCTTGAAT+TGG 0.359913 6:-100940903 None:intergenic
GGGCTTGGGCTTGGGTTTGA+GGG 0.362660 6:-100940630 None:intergenic
GTTGCTGCGGTTGCTGCTAC+TGG 0.366886 6:+100941253 MsG0680035239.01.T01:CDS
CTTCCTTCAAGAACAGTACT+AGG 0.369950 6:-100940828 None:intergenic
ACGGTGTTGGGAGGCGGAGC+TGG 0.371252 6:-100940131 None:intergenic
TGAAATGAAATGAATAATTA+GGG 0.378205 6:-100940051 None:intergenic
TTCACTCCGGCTTCTGGTAC+TGG 0.387627 6:+100941026 MsG0680035239.01.T01:CDS
GCCTGTGTCTGAGCCACAGC+CGG 0.389440 6:-100940735 None:intergenic
GGATTCTGCTGTTGATTCTT+CGG 0.389753 6:-100941101 None:intergenic
TGCACTGTCCCTTCCTGCAC+AGG 0.394599 6:-100941146 None:intergenic
TGGTTGAAGAGGTGGTTGTT+GGG 0.397130 6:-100940171 None:intergenic
AAAGTTGGTGTTGTTATCTT+GGG 0.400094 6:-100940650 None:intergenic
AGCCTGTTTGGGCCGCACTT+GGG 0.400384 6:+100940778 MsG0680035239.01.T01:CDS
GGCTTGGGCTTGGGTTTGAG+GGG 0.403926 6:-100940629 None:intergenic
GGAGGTGGAGAAGGAGGTAA+TGG 0.409587 6:-100940554 None:intergenic
GTTGTTGGGTTCGACGGCGA+AGG 0.411424 6:-100940157 None:intergenic
AGCCCAAGTGCGGCCCAAAC+AGG 0.414618 6:-100940780 None:intergenic
GGAGGAAGTTGTTGTGGTGG+TGG 0.416063 6:-100940191 None:intergenic
GAGGTGGAGAAGGAGGTAAT+GGG 0.421062 6:-100940553 None:intergenic
CACAGCAATTGAAGCATTGA+AGG 0.421633 6:+100940358 MsG0680035239.01.T01:CDS
CTTGGCCTTCCTCTAGATCT+CGG 0.425337 6:-100941200 None:intergenic
GGTGTTGTTATCTTGGGCTT+GGG 0.427338 6:-100940644 None:intergenic
ACGGCGAAGGGGAACGGTGT+TGG 0.433811 6:-100940144 None:intergenic
TGAATCTTTGGTGGACGTCC+TGG 0.435337 6:-100940993 None:intergenic
ACAGTGCAGGCTGGAGTGGA+AGG 0.436715 6:+100941161 MsG0680035239.01.T01:CDS
CAGCCTAGTACTGTTCTTGA+AGG 0.440904 6:+100940825 MsG0680035239.01.T01:CDS
AGAGGCAGAGGACGTGGAAG+AGG 0.449151 6:+100941277 MsG0680035239.01.T01:CDS
GGAAGAAGGTGAAGCGGTGG+GGG 0.451220 6:-100940576 None:intergenic
GTAGCAGCAACCGCAGCAAC+CGG 0.451275 6:-100941250 None:intergenic
TTGTTGGGTTCGACGGCGAA+GGG 0.460390 6:-100940156 None:intergenic
GCGGTTGCTGCTACTGGTAG+AGG 0.462554 6:+100941259 MsG0680035239.01.T01:CDS
TCTGGGCCTACCACGAGGTC+TGG 0.463109 6:-100940597 None:intergenic
GAAGAAGGTGAAGCGGTGGG+GGG 0.463551 6:-100940575 None:intergenic
GTACTAGGCTGAACAGCAAC+AGG 0.465979 6:-100940813 None:intergenic
TGATGCTGTTGCTGCTGTGC+CGG 0.466080 6:+100941231 MsG0680035239.01.T01:CDS
TGATTCTTCGGTGGACGCCC+TGG 0.466306 6:-100941089 None:intergenic
AGGGGAACGGTGTTGGGAGG+CGG 0.466985 6:-100940137 None:intergenic
AATATCTTTCTCTCTCCTCA+TGG 0.468588 6:+100940088 MsG0680035239.01.T01:exon
AGGTGGAGAAGGAGGTAATG+GGG 0.468711 6:-100940552 None:intergenic
AGTCCTCCAGCCCCAATTCA+AGG 0.471673 6:+100940891 MsG0680035239.01.T01:CDS
TGGAAGAAGGTGAAGCGGTG+GGG 0.472072 6:-100940577 None:intergenic
AGGGACAGTGCAGGCTGGAG+TGG 0.474513 6:+100941157 MsG0680035239.01.T01:CDS
AGCCCCAATTCAAGGTGGTC+CGG 0.483344 6:+100940899 MsG0680035239.01.T01:CDS
GGTTCGACGGCGAAGGGGAA+CGG 0.484360 6:-100940150 None:intergenic
CGAGGGAGAGGACGTCCTCC+TGG 0.484542 6:+100940945 MsG0680035239.01.T01:CDS
CTGGAAGAAGGTGAAGCGGT+GGG 0.485145 6:-100940578 None:intergenic
TCCTGCACAGGTGCAGCAAA+TGG 0.486080 6:-100941134 None:intergenic
GAAGGAGGAGGAAGTTGTTG+TGG 0.488282 6:-100940197 None:intergenic
GAGGTGGTTGTTGGGTTCGA+CGG 0.490135 6:-100940163 None:intergenic
GAGAAGATTACCTCAGCATA+AGG 0.493075 6:-100940242 None:intergenic
TGCTGCTGTGCCGGTTGCTG+CGG 0.493146 6:+100941240 MsG0680035239.01.T01:CDS
CCCGGCTGTGGCTCAGACAC+AGG 0.495754 6:+100940734 MsG0680035239.01.T01:CDS
GCTGGTGAAGAGATCGAAGA+TGG 0.498933 6:-100940113 None:intergenic
AGTGCAGGCTGGAGTGGAAG+GGG 0.504264 6:+100941163 MsG0680035239.01.T01:CDS
CAGGAAGGGACAGTGCAGGC+TGG 0.510635 6:+100941152 MsG0680035239.01.T01:CDS
TGTGGTGGTGGTTGAAGAGG+TGG 0.516334 6:-100940179 None:intergenic
CGAAGGGGAACGGTGTTGGG+AGG 0.516386 6:-100940140 None:intergenic
TTGAAGCGTTTGAAATCTGA+AGG 0.518653 6:+100940485 MsG0680035239.01.T01:CDS
ACCATTTGCTGCACCTGTGC+AGG 0.521983 6:+100941133 MsG0680035239.01.T01:CDS
ACTACACCGTCTCGAGGGAG+AGG 0.527619 6:+100940933 MsG0680035239.01.T01:CDS
TCTGGAGCACTAGCAGTAGC+AGG 0.528446 6:-100945302 None:intergenic
CAGTGCAGGCTGGAGTGGAA+GGG 0.528903 6:+100941162 MsG0680035239.01.T01:CDS
ACTGGTAGAGGCAGAGGACG+TGG 0.528960 6:+100941271 MsG0680035239.01.T01:CDS
TGTTGTGGTGGTGGTTGAAG+AGG 0.529773 6:-100940182 None:intergenic
TGAAGGAAGTAAAAGAAGAC+CGG 0.530073 6:+100940842 MsG0680035239.01.T01:CDS
TTTGATTTAGATTTCGAACC+AGG 0.531146 6:-100940963 None:intergenic
GCAGCAAATGGTATCACAGT+TGG 0.531824 6:-100941122 None:intergenic
CTCTCCGGCTGAATCTTTGG+TGG 0.536197 6:-100941002 None:intergenic
GGTGTAGTTGAAACTGAAAC+CGG 0.539320 6:-100940918 None:intergenic
TTGCTGCACCTGTGCAGGAA+GGG 0.539598 6:+100941138 MsG0680035239.01.T01:CDS
TTCTGCTGTTGATTCTTCGG+TGG 0.541541 6:-100941098 None:intergenic
GAAGCATTGAAGGAGAAAGA+TGG 0.544893 6:+100940368 MsG0680035239.01.T01:CDS
TAACAGCAGCAACCCGGCTG+TGG 0.545282 6:+100940722 MsG0680035239.01.T01:intron
GCTTCTGGTACTGGTACTGC+TGG 0.545837 6:+100941035 MsG0680035239.01.T01:CDS
CTACCACGAGGTCTGGAAGA+AGG 0.546069 6:-100940590 None:intergenic
AGAGGACGTGGAAGAGGCCG+CGG 0.547534 6:+100941283 MsG0680035239.01.T01:CDS
GGACCACCTTGAATTGGGGC+TGG 0.547890 6:-100940897 None:intergenic
TGTGCAGGAAGGGACAGTGC+AGG 0.554407 6:+100941148 MsG0680035239.01.T01:CDS
CCTGTGTCTGAGCCACAGCC+GGG 0.555518 6:-100940734 None:intergenic
GCTGCTACTGGTAGAGGCAG+AGG 0.558636 6:+100941265 MsG0680035239.01.T01:CDS
GGAGGAGGAAGTTGTTGTGG+TGG 0.568297 6:-100940194 None:intergenic
CTTGTGACTCCGAGATCTAG+AGG 0.577835 6:+100941191 MsG0680035239.01.T01:CDS
GGTGGTTCGAAGAGAAGACC+AGG 0.580857 6:+100941071 MsG0680035239.01.T01:CDS
AACCGGACCACCTTGAATTG+GGG 0.581438 6:-100940901 None:intergenic
TGTTGGGTTCGACGGCGAAG+GGG 0.581859 6:-100940155 None:intergenic
AAGATTACCTCAGCATAAGG+TGG 0.584771 6:-100940239 None:intergenic
ACGTCCACCAAAGATTCAGC+CGG 0.594972 6:+100940998 MsG0680035239.01.T01:CDS
CTGGTGAAGAGATCGAAGAT+GGG 0.599427 6:-100940112 None:intergenic
GCAGTACCAGTACCAGAAGC+CGG 0.599709 6:-100941032 None:intergenic
AGATTACCTCAGCATAAGGT+GGG 0.606468 6:-100940238 None:intergenic
GTTTCAACTACACCGTCTCG+AGG 0.613598 6:+100940927 MsG0680035239.01.T01:CDS
TCTGGTACTGGTACTGCTGG+TGG 0.615652 6:+100941038 MsG0680035239.01.T01:CDS
TGGTTGAAAGAAGAAGAAGA+AGG 0.616221 6:-100940215 None:intergenic
GGCTTTCTGGGCCTACCACG+AGG 0.617388 6:-100940602 None:intergenic
CCACCTTGAATTGGGGCTGG+AGG 0.618012 6:-100940894 None:intergenic
CTTCTTCCAGACCTCGTGGT+AGG 0.618128 6:+100940591 MsG0680035239.01.T01:CDS
CAACCACCCACCTTATGCTG+AGG 0.618938 6:+100940232 MsG0680035239.01.T01:CDS
GAAGGAAGTAAAAGAAGACC+GGG 0.626433 6:+100940843 MsG0680035239.01.T01:CDS
GAAGCCGGAGTGAAACTCTC+CGG 0.627253 6:-100941017 None:intergenic
TTTGCTGCACCTGTGCAGGA+AGG 0.628210 6:+100941137 MsG0680035239.01.T01:CDS
TGACTCCGAGATCTAGAGGA+AGG 0.631884 6:+100941195 MsG0680035239.01.T01:CDS
TCTGGAAGAAGGTGAAGCGG+TGG 0.632130 6:-100940579 None:intergenic
CTCATCATTAAGCCCAAGTG+CGG 0.636004 6:-100940790 None:intergenic
TCTAAATCAAAGAAGAGACC+AGG 0.636287 6:+100940975 MsG0680035239.01.T01:CDS
TTTCAACTACACCGTCTCGA+GGG 0.640448 6:+100940928 MsG0680035239.01.T01:CDS
ATAATATAACAGCAGCAACC+CGG 0.641229 6:+100940716 MsG0680035239.01.T01:intron
GGACGTCCTCTCCCTCGAGA+CGG 0.643181 6:-100940939 None:intergenic
TCAGCCGGAGAGTTTCACTC+CGG 0.643648 6:+100941013 MsG0680035239.01.T01:CDS
GATTTAGATTTCGAACCAGG+AGG 0.645101 6:-100940960 None:intergenic
TGGAGAAGGAGGTAATGGGG+TGG 0.646924 6:-100940549 None:intergenic
GCTGGTGGTGTTGTTTCGGG+TGG 0.647446 6:+100941053 MsG0680035239.01.T01:CDS
AGGTCTGGAAGAAGGTGAAG+CGG 0.661886 6:-100940582 None:intergenic
AGATCGAAGATGGGTCCATG+AGG 0.667617 6:-100940103 None:intergenic
TCACCTTCTTCCAGACCTCG+TGG 0.668773 6:+100940587 MsG0680035239.01.T01:CDS
CTGTGGCTGAATAACAAAGT+TGG 0.673195 6:-100940665 None:intergenic
TTACCTCAGCATAAGGTGGG+TGG 0.679100 6:-100940235 None:intergenic
GTGGTTCGAAGAGAAGACCA+GGG 0.743548 6:+100941072 MsG0680035239.01.T01:CDS
CCTCCAGCCCCAATTCAAGG+TGG 0.747498 6:+100940894 MsG0680035239.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATAATAATCATAAATCATAT+AGG - Chr6:100944926-100944945 None:intergenic 10.0%
!! TAATAATCATAAATCATATA+GGG - Chr6:100944925-100944944 None:intergenic 10.0%
!!! ATATTTCTATGATTTAAAAT+TGG + Chr6:100943439-100943458 MsG0680035239.01.T01:intron 10.0%
!! ATGAAATGAAATGAATAATT+AGG - Chr6:100940055-100940074 None:intergenic 15.0%
!! TCAAAAACAATTATACAATA+GGG - Chr6:100944957-100944976 None:intergenic 15.0%
!! TGAAATGAAATGAATAATTA+GGG - Chr6:100940054-100940073 None:intergenic 15.0%
!! TTATATAAATTAATCATCTG+TGG + Chr6:100943000-100943019 MsG0680035239.01.T01:intron 15.0%
!! TTCAAAAACAATTATACAAT+AGG - Chr6:100944958-100944977 None:intergenic 15.0%
!!! AAAAATAAGTTTTTTTCTTG+GGG + Chr6:100943874-100943893 MsG0680035239.01.T01:intron 15.0%
!!! AAATATTGTGTTATCATTTT+AGG + Chr6:100943737-100943756 MsG0680035239.01.T01:intron 15.0%
!!! AATATTGTGTTATCATTTTA+GGG + Chr6:100943738-100943757 MsG0680035239.01.T01:intron 15.0%
!!! ACAAAAATAAGTTTTTTTCT+TGG + Chr6:100943872-100943891 MsG0680035239.01.T01:intron 15.0%
!!! ATAATTTTGTTATAATACTC+TGG + Chr6:100942336-100942355 MsG0680035239.01.T01:intron 15.0%
!!! CAAAAATAAGTTTTTTTCTT+GGG + Chr6:100943873-100943892 MsG0680035239.01.T01:intron 15.0%
!! AAAATCTTCAGAAAAGTAAA+AGG - Chr6:100942653-100942672 None:intergenic 20.0%
!! AAACTTGATATAGTATCTTT+AGG - Chr6:100943525-100943544 None:intergenic 20.0%
!! AAATCTTCAGAAAAGTAAAA+GGG - Chr6:100942652-100942671 None:intergenic 20.0%
!! AAATGATGCAAAAAAATATG+TGG - Chr6:100944226-100944245 None:intergenic 20.0%
!! AATGATGCAAAAAAATATGT+GGG - Chr6:100944225-100944244 None:intergenic 20.0%
!! ATAACTTGATATAGTATCTT+AGG - Chr6:100943636-100943655 None:intergenic 20.0%
!! ATTGTATAAAATGATCTTTG+TGG + Chr6:100944280-100944299 MsG0680035239.01.T01:intron 20.0%
!! CTTAAAAAATTCTACTTCTT+AGG - Chr6:100941406-100941425 None:intergenic 20.0%
!! TAATAGTAATAAACTTACAG+TGG - Chr6:100945002-100945021 None:intergenic 20.0%
!! TTTCTGTTTATGTAGTATAT+AGG + Chr6:100942897-100942916 MsG0680035239.01.T01:intron 20.0%
!!! AAAGTTTTCTATTTTGAGTT+TGG + Chr6:100942564-100942583 MsG0680035239.01.T01:intron 20.0%
!!! AACTTTTTTTGAAGGAAAAA+AGG - Chr6:100942937-100942956 None:intergenic 20.0%
!!! AATAGTTACTTTATCATCTT+GGG - Chr6:100944601-100944620 None:intergenic 20.0%
!!! AGACTTATAATTGAACTTTT+TGG + Chr6:100944042-100944061 MsG0680035239.01.T01:intron 20.0%
!!! ATTTTATTGCTCATATTGAT+TGG + Chr6:100945266-100945285 MsG0680035239.01.T01:intron 20.0%
!!! CATGACATTTATTTTCAATT+TGG - Chr6:100945069-100945088 None:intergenic 20.0%
!!! TGAGCAGTATAATTTTAAAA+AGG - Chr6:100942964-100942983 None:intergenic 20.0%
!!! TGATTTTTAGAAACTGTTTT+TGG + Chr6:100943079-100943098 MsG0680035239.01.T01:intron 20.0%
!!! TTCTATATCATATTTTTGTG+CGG + Chr6:100944322-100944341 MsG0680035239.01.T01:intron 20.0%
!!! TTGTTTTCAAGTTTAATGAA+TGG + Chr6:100942502-100942521 MsG0680035239.01.T01:intron 20.0%
!!! TTTAAATTTGTTTTTTTCCC+TGG + Chr6:100944345-100944364 MsG0680035239.01.T01:intron 20.0%
!!! TTTTATGTCTGATTGTTTTA+AGG + Chr6:100943543-100943562 MsG0680035239.01.T01:intron 20.0%
!!! TTTTGATTATGCAAGATTTA+CGG + Chr6:100941502-100941521 MsG0680035239.01.T01:intron 20.0%
!!! TTTTTAATTTGAAGGTGAAT+AGG + Chr6:100943900-100943919 MsG0680035239.01.T01:intron 20.0%
! AAACTAAAAGTTTACTTTGC+AGG + Chr6:100943297-100943316 MsG0680035239.01.T01:intron 25.0%
! AACTCTATGCAAATATATAG+GGG + Chr6:100944518-100944537 MsG0680035239.01.T01:intron 25.0%
! AATAACATCCAAATACATCT+TGG - Chr6:100942809-100942828 None:intergenic 25.0%
! AATAACTTCACTAAATATCC+AGG - Chr6:100944366-100944385 None:intergenic 25.0%
! ACATCTTGGAATTCAATATA+TGG - Chr6:100942795-100942814 None:intergenic 25.0%
! AGAACAGTTTATAAATGCTA+AGG - Chr6:100945237-100945256 None:intergenic 25.0%
! AGAGAAAGATATTCGAAAAA+TGG - Chr6:100940081-100940100 None:intergenic 25.0%
! ATAAATCATATAGGGAAAAC+AGG - Chr6:100944917-100944936 None:intergenic 25.0%
! ATAACTTCACTAAATATCCA+GGG - Chr6:100944365-100944384 None:intergenic 25.0%
! ATTCCGACAATATAATTCAA+AGG - Chr6:100944839-100944858 None:intergenic 25.0%
! ATTGAATTCCAAGATGTATT+TGG + Chr6:100942798-100942817 MsG0680035239.01.T01:intron 25.0%
! GAACTCTATGCAAATATATA+GGG + Chr6:100944517-100944536 MsG0680035239.01.T01:intron 25.0%
! GAGAAAGATATTCGAAAAAT+GGG - Chr6:100940080-100940099 None:intergenic 25.0%
! GGATTATACAAAATACTAAC+AGG + Chr6:100943574-100943593 MsG0680035239.01.T01:intron 25.0%
! GTAGATTCGCTATATTAATT+TGG + Chr6:100944549-100944568 MsG0680035239.01.T01:intron 25.0%
! TAAATCATATAGGGAAAACA+GGG - Chr6:100944916-100944935 None:intergenic 25.0%
! TAGAAAGCAAAACAAATAAG+AGG - Chr6:100944174-100944193 None:intergenic 25.0%
! TATTAATGAGTTATTGCAGT+TGG + Chr6:100943119-100943138 MsG0680035239.01.T01:intron 25.0%
! TCAAGTTTAATGAATGGTTT+CGG + Chr6:100942508-100942527 MsG0680035239.01.T01:intron 25.0%
! TTATTATGTGTGACTGTTTA+AGG + Chr6:100943652-100943671 MsG0680035239.01.T01:intron 25.0%
! TTGCCTTTGAATTATATTGT+CGG + Chr6:100944833-100944852 MsG0680035239.01.T01:intron 25.0%
!! AACTTGTATGCATTTTATAC+AGG - Chr6:100943467-100943486 None:intergenic 25.0%
!! CAATAGTTACTTTATCATCT+TGG - Chr6:100944602-100944621 None:intergenic 25.0%
!! TATAATTGAACTTTTTGGAC+TGG + Chr6:100944047-100944066 MsG0680035239.01.T01:intron 25.0%
!! TCTGAAGATTTTTCCTTTTT+GGG + Chr6:100942661-100942680 MsG0680035239.01.T01:intron 25.0%
!! TGAAGTATAATGAATGGTTT+TGG + Chr6:100942370-100942389 MsG0680035239.01.T01:intron 25.0%
!! TGAATTTTGCAATCTGAAAA+TGG + Chr6:100943348-100943367 MsG0680035239.01.T01:intron 25.0%
!! TTTTGATGAGATTCTGAATT+TGG - Chr6:100940449-100940468 None:intergenic 25.0%
!!! AAAAAAACAGTCGATTTTTC+TGG + Chr6:100943383-100943402 MsG0680035239.01.T01:intron 25.0%
!!! AAGGAGTTAACTTTTTTTGA+AGG - Chr6:100942945-100942964 None:intergenic 25.0%
!!! AGTCTATCATATCATTTTTG+TGG + Chr6:100944467-100944486 MsG0680035239.01.T01:intron 25.0%
!!! GATTGTTTTAAGGTGAATAT+TGG + Chr6:100943553-100943572 MsG0680035239.01.T01:intron 25.0%
!!! GTCTATCATATCATTTTTGT+GGG + Chr6:100944468-100944487 MsG0680035239.01.T01:intron 25.0%
!!! GTTGATTTTTAGATGATTAG+TGG + Chr6:100941479-100941498 MsG0680035239.01.T01:intron 25.0%
!!! TGGGGTAATTTTTAATTTGA+AGG + Chr6:100943892-100943911 MsG0680035239.01.T01:intron 25.0%
!!! TTCTGAAGATTTTTCCTTTT+TGG + Chr6:100942660-100942679 MsG0680035239.01.T01:intron 25.0%
!!! TTGATTTGTTGTTGAATTAG+AGG + Chr6:100941589-100941608 MsG0680035239.01.T01:intron 25.0%
!!! TTGATTTGTTGTTGAATTAG+TGG + Chr6:100941589-100941608 MsG0680035239.01.T01:intron 25.0%
!!! TTTTTAGAAACTGTTTTTGG+TGG + Chr6:100943082-100943101 MsG0680035239.01.T01:intron 25.0%
AAGTGAATTTGTCAATCAGA+CGG - Chr6:100943162-100943181 None:intergenic 30.0%
AATCAATCCAGCAAAGATTT+AGG - Chr6:100942595-100942614 None:intergenic 30.0%
AGATTAACTGGAACTGAATA+TGG + Chr6:100942685-100942704 MsG0680035239.01.T01:intron 30.0%
AGGCAGATATAAAACAAAGA+AGG - Chr6:100944878-100944897 None:intergenic 30.0%
CATTCATTATACTTCAAACC+GGG - Chr6:100942366-100942385 None:intergenic 30.0%
CCATTCATTATACTTCAAAC+CGG - Chr6:100942367-100942386 None:intergenic 30.0%
GGAACTCTATGCAAATATAT+AGG + Chr6:100944516-100944535 MsG0680035239.01.T01:intron 30.0%
! TAAAACTGAGTTTGAAGTGA+AGG + Chr6:100945159-100945178 MsG0680035239.01.T01:intron 30.0%
! TATTGTGCTGTGTTGTTAAA+TGG + Chr6:100944617-100944636 MsG0680035239.01.T01:intron 30.0%
! TTTGATTTAGATTTCGAACC+AGG - Chr6:100940966-100940985 None:intergenic 30.0%
!! AAAGTTGGTGTTGTTATCTT+GGG - Chr6:100940653-100940672 None:intergenic 30.0%
!! ATTTTAGAGAGAGAAACAGA+GGG - Chr6:100940278-100940297 None:intergenic 30.0%
!! GGTAATGTCATGTTTTTGTT+AGG + Chr6:100942706-100942725 MsG0680035239.01.T01:intron 30.0%
!! TTTAAGCTTTTTGACTGTTC+TGG + Chr6:100941420-100941439 MsG0680035239.01.T01:intron 30.0%
!!! ATTAGAGGTTTTAGATTTGC+AGG + Chr6:100941731-100941750 MsG0680035239.01.T01:intron 30.0%
!!! ATTAGTGGTTTTAGATATGC+AGG + Chr6:100941604-100941623 MsG0680035239.01.T01:intron 30.0%
!!! TTAGCTGTTGTAGTTTTTTC+AGG + Chr6:100943698-100943717 MsG0680035239.01.T01:intron 30.0%
!!! TTATAATACTCTGGTTTTCC+CGG + Chr6:100942345-100942364 MsG0680035239.01.T01:intron 30.0%
AAAAGTTTACTTTGCAGGAC+TGG + Chr6:100943302-100943321 MsG0680035239.01.T01:intron 35.0%
AACAGCATCACATTCTTTCT+TGG - Chr6:100941221-100941240 None:intergenic 35.0%
AATATCTTTCTCTCTCCTCA+TGG + Chr6:100940088-100940107 MsG0680035239.01.T01:exon 35.0%
AGAGCAATTCAAACAACTTG+AGG - Chr6:100944136-100944155 None:intergenic 35.0%
ATAATATAACAGCAGCAACC+CGG + Chr6:100940716-100940735 MsG0680035239.01.T01:intron 35.0%
CAAGTTGTTTGAATTGCTCT+TGG + Chr6:100944136-100944155 MsG0680035239.01.T01:intron 35.0%
TAGTACACAATCCGTATACA+AGG + Chr6:100944495-100944514 MsG0680035239.01.T01:intron 35.0%
TCACAGTATCTCTGCTAAAA+AGG - Chr6:100945036-100945055 None:intergenic 35.0%
TCCAGTTAATCTACCCAAAA+AGG - Chr6:100942677-100942696 None:intergenic 35.0%
TCGTACAATGTTGTGTATCA+CGG - Chr6:100944720-100944739 None:intergenic 35.0%
TCTAAATCAAAGAAGAGACC+AGG + Chr6:100940975-100940994 MsG0680035239.01.T01:CDS 35.0%
TGAAGGAAGTAAAAGAAGAC+CGG + Chr6:100940842-100940861 MsG0680035239.01.T01:CDS 35.0%
TGCAAGTCAAGAAAAACGTA+TGG - Chr6:100941834-100941853 None:intergenic 35.0%
TGCATAGAGTTCCTTGTATA+CGG - Chr6:100944509-100944528 None:intergenic 35.0%
TGGTTGAAAGAAGAAGAAGA+AGG - Chr6:100940218-100940237 None:intergenic 35.0%
TTGAAAGAAGAAGAAGAAGG+AGG - Chr6:100940215-100940234 None:intergenic 35.0%
TTTCCATTCATATGGTCCAT+TGG - Chr6:100943817-100943836 None:intergenic 35.0%
! AAAGTAAAAGGGTACAGACA+TGG - Chr6:100942641-100942660 None:intergenic 35.0%
! CCGGTTTGAAGTATAATGAA+TGG + Chr6:100942364-100942383 MsG0680035239.01.T01:intron 35.0%
! GTCTCTTTAGCATCATTTTC+TGG - Chr6:100945323-100945342 None:intergenic 35.0%
! TGCACTGTTTTCCATTCATA+TGG - Chr6:100943825-100943844 None:intergenic 35.0%
! TTGAAGCGTTTGAAATCTGA+AGG + Chr6:100940485-100940504 MsG0680035239.01.T01:CDS 35.0%
!! AGTTTGTTCCCTTTTTAGGA+CGG - Chr6:100940869-100940888 None:intergenic 35.0%
!! CAAAGTTGGTGTTGTTATCT+TGG - Chr6:100940654-100940673 None:intergenic 35.0%
!! CTCAAGTTTGTTCCCTTTTT+AGG - Chr6:100940873-100940892 None:intergenic 35.0%
!! GATTTTAGAGAGAGAAACAG+AGG - Chr6:100940279-100940298 None:intergenic 35.0%
!! TTGACTTGCAGTTGAATTAG+CGG + Chr6:100941844-100941863 MsG0680035239.01.T01:intron 35.0%
!!! TCCTTTTTGGGTAGATTAAC+TGG + Chr6:100942673-100942692 MsG0680035239.01.T01:intron 35.0%
AAAAGCGATGTTGTCAATCG+CGG - Chr6:100944815-100944834 None:intergenic 40.0%
AAAGAAGAAGAAGAAGGAGG+AGG - Chr6:100940212-100940231 None:intergenic 40.0%
AAGATTACCTCAGCATAAGG+TGG - Chr6:100940242-100940261 None:intergenic 40.0%
AGATTACCTCAGCATAAGGT+GGG - Chr6:100940241-100940260 None:intergenic 40.0%
AGCAGAGATACTGTGAATTC+TGG + Chr6:100945040-100945059 MsG0680035239.01.T01:intron 40.0%
ATATGGTCCATTGGCAATGT+AGG - Chr6:100943808-100943827 None:intergenic 40.0%
ATGTTGTCAATCGCGGATAA+TGG - Chr6:100944808-100944827 None:intergenic 40.0%
ATTTCTCCCTACATTGCCAA+TGG + Chr6:100943798-100943817 MsG0680035239.01.T01:intron 40.0%
CAGGGAAAATGAGTGTAACA+AGG - Chr6:100944898-100944917 None:intergenic 40.0%
CTGCTCAATTTCATCATCTG+TGG + Chr6:100942977-100942996 MsG0680035239.01.T01:intron 40.0%
CTGTGGCTGAATAACAAAGT+TGG - Chr6:100940668-100940687 None:intergenic 40.0%
CTTCCTTCAAGAACAGTACT+AGG - Chr6:100940831-100940850 None:intergenic 40.0%
GAAGGAAGTAAAAGAAGACC+GGG + Chr6:100940843-100940862 MsG0680035239.01.T01:CDS 40.0%
GAGAAGATTACCTCAGCATA+AGG - Chr6:100940245-100940264 None:intergenic 40.0%
GATTTAGATTTCGAACCAGG+AGG - Chr6:100940963-100940982 None:intergenic 40.0%
GCAGAGATACTGTGAATTCT+GGG + Chr6:100945041-100945060 MsG0680035239.01.T01:intron 40.0%
GCTGGATTGATTGCATTAGT+AGG + Chr6:100942603-100942622 MsG0680035239.01.T01:intron 40.0%
GGATTGTCCTAAATCTTTGC+TGG + Chr6:100942585-100942604 MsG0680035239.01.T01:intron 40.0%
GGTGTAGTTGAAACTGAAAC+CGG - Chr6:100940921-100940940 None:intergenic 40.0%
TATGGTCCATTGGCAATGTA+GGG - Chr6:100943807-100943826 None:intergenic 40.0%
TGCAAGTCAAGAAAAACGCA+TGG - Chr6:100941963-100941982 None:intergenic 40.0%
TTGCCAATGGACCATATGAA+TGG + Chr6:100943811-100943830 MsG0680035239.01.T01:intron 40.0%
TTGTTAGTAACAGCAGCAAC+AGG - Chr6:100940697-100940716 None:intergenic 40.0%
! TGTGCTGTGTTGTTAAATGG+TGG + Chr6:100944620-100944639 MsG0680035239.01.T01:intron 40.0%
!! CACAGCAATTGAAGCATTGA+AGG + Chr6:100940358-100940377 MsG0680035239.01.T01:CDS 40.0%
!! GAAGCATTGAAGGAGAAAGA+TGG + Chr6:100940368-100940387 MsG0680035239.01.T01:CDS 40.0%
!! GGATTCTGCTGTTGATTCTT+CGG - Chr6:100941104-100941123 None:intergenic 40.0%
AAACCGGACCACCTTGAATT+GGG - Chr6:100940905-100940924 None:intergenic 45.0%
AAACTCTCCGGCTGAATCTT+TGG - Chr6:100941008-100941027 None:intergenic 45.0%
AGTTTACTTTGCAGGACTGG+TGG + Chr6:100943305-100943324 MsG0680035239.01.T01:intron 45.0%
CAGCCTAGTACTGTTCTTGA+AGG + Chr6:100940825-100940844 MsG0680035239.01.T01:CDS 45.0%
CTCATCATTAAGCCCAAGTG+CGG - Chr6:100940793-100940812 None:intergenic 45.0%
CTGGTGAAGAGATCGAAGAT+GGG - Chr6:100940115-100940134 None:intergenic 45.0%
GCAGCAAATGGTATCACAGT+TGG - Chr6:100941125-100941144 None:intergenic 45.0%
TGGTTGAAGAGGTGGTTGTT+GGG - Chr6:100940174-100940193 None:intergenic 45.0%
TTTCAACTACACCGTCTCGA+GGG + Chr6:100940928-100940947 MsG0680035239.01.T01:CDS 45.0%
! ACAGGCCTTTTCCCAAAAGA+TGG - Chr6:100941376-100941395 None:intergenic 45.0%
!! ATCTTTTGGGAAAAGGCCTG+TGG + Chr6:100941375-100941394 MsG0680035239.01.T01:intron 45.0%
!! GGTGTTGTTATCTTGGGCTT+GGG - Chr6:100940647-100940666 None:intergenic 45.0%
!! TACTGCTGGTGGTGTTGTTT+CGG + Chr6:100941049-100941068 MsG0680035239.01.T01:CDS 45.0%
!! TCTTTTGGGAAAAGGCCTGT+GGG + Chr6:100941376-100941395 MsG0680035239.01.T01:intron 45.0%
!! TGGCTCCATCTTTTGGGAAA+AGG + Chr6:100941368-100941387 MsG0680035239.01.T01:intron 45.0%
!! TGGTGTTGTTATCTTGGGCT+TGG - Chr6:100940648-100940667 None:intergenic 45.0%
!! TTCTGCTGTTGATTCTTCGG+TGG - Chr6:100941101-100941120 None:intergenic 45.0%
AACCGGACCACCTTGAATTG+GGG - Chr6:100940904-100940923 None:intergenic 50.0%
ACGTCCACCAAAGATTCAGC+CGG + Chr6:100940998-100941017 MsG0680035239.01.T01:CDS 50.0%
AGATCGAAGATGGGTCCATG+AGG - Chr6:100940106-100940125 None:intergenic 50.0%
AGGTCTGGAAGAAGGTGAAG+CGG - Chr6:100940585-100940604 None:intergenic 50.0%
AGGTGGAGAAGGAGGTAATG+GGG - Chr6:100940555-100940574 None:intergenic 50.0%
ATGCTTCTGCTGAGCCTGTT+TGG + Chr6:100940766-100940785 MsG0680035239.01.T01:CDS 50.0%
CTTGTGACTCCGAGATCTAG+AGG + Chr6:100941191-100941210 MsG0680035239.01.T01:CDS 50.0%
GAAACCGGACCACCTTGAAT+TGG - Chr6:100940906-100940925 None:intergenic 50.0%
GAAGGAGGAGGAAGTTGTTG+TGG - Chr6:100940200-100940219 None:intergenic 50.0%
GAGGTGGAGAAGGAGGTAAT+GGG - Chr6:100940556-100940575 None:intergenic 50.0%
GCTATAGCAGTGTTGCGTAG+CGG + Chr6:100944760-100944779 MsG0680035239.01.T01:intron 50.0%
GCTGGTGAAGAGATCGAAGA+TGG - Chr6:100940116-100940135 None:intergenic 50.0%
GTAACAGCAGCAACAGGAAG+TGG - Chr6:100940691-100940710 None:intergenic 50.0%
GTACTAGGCTGAACAGCAAC+AGG - Chr6:100940816-100940835 None:intergenic 50.0%
GTGGTTCGAAGAGAAGACCA+GGG + Chr6:100941072-100941091 MsG0680035239.01.T01:CDS 50.0%
GTGGTTGAAGAGGTGGTTGT+TGG - Chr6:100940175-100940194 None:intergenic 50.0%
GTTATCTTGGGCTTGGGCTT+GGG - Chr6:100940641-100940660 None:intergenic 50.0%
GTTTCAACTACACCGTCTCG+AGG + Chr6:100940927-100940946 MsG0680035239.01.T01:CDS 50.0%
TACTTCTTAGGTCGACCCAC+AGG - Chr6:100941394-100941413 None:intergenic 50.0%
TGACTCCGAGATCTAGAGGA+AGG + Chr6:100941195-100941214 MsG0680035239.01.T01:CDS 50.0%
TGCTTCTGCTGAGCCTGTTT+GGG + Chr6:100940767-100940786 MsG0680035239.01.T01:CDS 50.0%
TGTTATCTTGGGCTTGGGCT+TGG - Chr6:100940642-100940661 None:intergenic 50.0%
TTACCTCAGCATAAGGTGGG+TGG - Chr6:100940238-100940257 None:intergenic 50.0%
TTCCCAAAAGATGGAGCCAG+CGG - Chr6:100941367-100941386 None:intergenic 50.0%
! CTTGGCCTTCCTCTAGATCT+CGG - Chr6:100941203-100941222 None:intergenic 50.0%
! TGAATCTTTGGTGGACGTCC+TGG - Chr6:100940996-100941015 None:intergenic 50.0%
!! ACTGCTGGTGGTGTTGTTTC+GGG + Chr6:100941050-100941069 MsG0680035239.01.T01:CDS 50.0%
!! GAGCCAGCGGATTAAGTCTA+GGG - Chr6:100941354-100941373 None:intergenic 50.0%
!! TGTTGTGGTGGTGGTTGAAG+AGG - Chr6:100940185-100940204 None:intergenic 50.0%
!!! AATCCGCTGGCTCCATCTTT+TGG + Chr6:100941361-100941380 MsG0680035239.01.T01:intron 50.0%
!!! ATCCGCTGGCTCCATCTTTT+GGG + Chr6:100941362-100941381 MsG0680035239.01.T01:intron 50.0%
AAGACCGGGCCGTCCTAAAA+AGG + Chr6:100940857-100940876 MsG0680035239.01.T01:CDS 55.0%
ACGCCCTAGACTTAATCCGC+TGG + Chr6:100941348-100941367 MsG0680035239.01.T01:intron 55.0%
AGACCGGGCCGTCCTAAAAA+GGG + Chr6:100940858-100940877 MsG0680035239.01.T01:CDS 55.0%
AGCCCCAATTCAAGGTGGTC+CGG + Chr6:100940899-100940918 MsG0680035239.01.T01:CDS 55.0%
AGTCCTCCAGCCCCAATTCA+AGG + Chr6:100940891-100940910 MsG0680035239.01.T01:CDS 55.0%
CAACCACCCACCTTATGCTG+AGG + Chr6:100940232-100940251 MsG0680035239.01.T01:CDS 55.0%
CTACCACGAGGTCTGGAAGA+AGG - Chr6:100940593-100940612 None:intergenic 55.0%
CTCTCCGGCTGAATCTTTGG+TGG - Chr6:100941005-100941024 None:intergenic 55.0%
CTGGAAGAAGGTGAAGCGGT+GGG - Chr6:100940581-100940600 None:intergenic 55.0%
CTTCTTCCAGACCTCGTGGT+AGG + Chr6:100940591-100940610 MsG0680035239.01.T01:CDS 55.0%
GAAGCCGGAGTGAAACTCTC+CGG - Chr6:100941020-100941039 None:intergenic 55.0%
GAGAGTTTCACTCCGGCTTC+TGG + Chr6:100941020-100941039 MsG0680035239.01.T01:CDS 55.0%
GAGGTGGTTGTTGGGTTCGA+CGG - Chr6:100940166-100940185 None:intergenic 55.0%
GCAGTACCAGTACCAGAAGC+CGG - Chr6:100941035-100941054 None:intergenic 55.0%
GGAGGAAGTTGTTGTGGTGG+TGG - Chr6:100940194-100940213 None:intergenic 55.0%
GGAGGAGGAAGTTGTTGTGG+TGG - Chr6:100940197-100940216 None:intergenic 55.0%
GGAGGTGGAGAAGGAGGTAA+TGG - Chr6:100940557-100940576 None:intergenic 55.0%
GGTGGTTCGAAGAGAAGACC+AGG + Chr6:100941071-100941090 MsG0680035239.01.T01:CDS 55.0%
TCACCTTCTTCCAGACCTCG+TGG + Chr6:100940587-100940606 MsG0680035239.01.T01:CDS 55.0%
TCAGCCGGAGAGTTTCACTC+CGG + Chr6:100941013-100941032 MsG0680035239.01.T01:CDS 55.0%
TCCTGCACAGGTGCAGCAAA+TGG - Chr6:100941137-100941156 None:intergenic 55.0%
TCTGGAAGAAGGTGAAGCGG+TGG - Chr6:100940582-100940601 None:intergenic 55.0%
TGATGCTGTTGCTGCTGTGC+CGG + Chr6:100941231-100941250 MsG0680035239.01.T01:CDS 55.0%
TGGAAGAAGGTGAAGCGGTG+GGG - Chr6:100940580-100940599 None:intergenic 55.0%
TTCACTCCGGCTTCTGGTAC+TGG + Chr6:100941026-100941045 MsG0680035239.01.T01:CDS 55.0%
TTGAGGGGTTGGGGCTTTCT+GGG - Chr6:100940617-100940636 None:intergenic 55.0%
TTGCTGCACCTGTGCAGGAA+GGG + Chr6:100941138-100941157 MsG0680035239.01.T01:CDS 55.0%
TTGTTGGGTTCGACGGCGAA+GGG - Chr6:100940159-100940178 None:intergenic 55.0%
TTTGAGGGGTTGGGGCTTTC+TGG - Chr6:100940618-100940637 None:intergenic 55.0%
TTTGCTGCACCTGTGCAGGA+AGG + Chr6:100941137-100941156 MsG0680035239.01.T01:CDS 55.0%
! ACCATTTGCTGCACCTGTGC+AGG + Chr6:100941133-100941152 MsG0680035239.01.T01:CDS 55.0%
! TCTGGAGCACTAGCAGTAGC+AGG - Chr6:100945305-100945324 None:intergenic 55.0%
!! GCTTCTGGTACTGGTACTGC+TGG + Chr6:100941035-100941054 MsG0680035239.01.T01:CDS 55.0%
!! GGAGCCAGCGGATTAAGTCT+AGG - Chr6:100941355-100941374 None:intergenic 55.0%
!! GGAGGTAATGGGGTGGATCT+AGG - Chr6:100940545-100940564 None:intergenic 55.0%
!! TCTGGTACTGGTACTGCTGG+TGG + Chr6:100941038-100941057 MsG0680035239.01.T01:CDS 55.0%
!! TGGAGAAGGAGGTAATGGGG+TGG - Chr6:100940552-100940571 None:intergenic 55.0%
!! TGTGGTGGTGGTTGAAGAGG+TGG - Chr6:100940182-100940201 None:intergenic 55.0%
!!! GTTCCCTTTTTAGGACGGCC+CGG - Chr6:100940864-100940883 None:intergenic 55.0%
ACAGTGCAGGCTGGAGTGGA+AGG + Chr6:100941161-100941180 MsG0680035239.01.T01:CDS 60.0%
ACTACACCGTCTCGAGGGAG+AGG + Chr6:100940933-100940952 MsG0680035239.01.T01:CDS 60.0%
ACTGGTAGAGGCAGAGGACG+TGG + Chr6:100941271-100941290 MsG0680035239.01.T01:CDS 60.0%
AGAGGCAGAGGACGTGGAAG+AGG + Chr6:100941277-100941296 MsG0680035239.01.T01:CDS 60.0%
AGCCTGTTTGGGCCGCACTT+GGG + Chr6:100940778-100940797 MsG0680035239.01.T01:CDS 60.0%
AGTGCAGGCTGGAGTGGAAG+GGG + Chr6:100941163-100941182 MsG0680035239.01.T01:CDS 60.0%
CAGTGCAGGCTGGAGTGGAA+GGG + Chr6:100941162-100941181 MsG0680035239.01.T01:CDS 60.0%
CCACCTTGAATTGGGGCTGG+AGG - Chr6:100940897-100940916 None:intergenic 60.0%
CCTCCAGCCCCAATTCAAGG+TGG + Chr6:100940894-100940913 MsG0680035239.01.T01:CDS 60.0%
CTCTTCCAGCAACACCACCG+CGG - Chr6:100941303-100941322 None:intergenic 60.0%
GAAGAAGGTGAAGCGGTGGG+GGG - Chr6:100940578-100940597 None:intergenic 60.0%
GCAGCAACAGGAAGTGGCTG+TGG - Chr6:100940685-100940704 None:intergenic 60.0%
GCGGTTGCTGCTACTGGTAG+AGG + Chr6:100941259-100941278 MsG0680035239.01.T01:CDS 60.0%
GCTGCTACTGGTAGAGGCAG+AGG + Chr6:100941265-100941284 MsG0680035239.01.T01:CDS 60.0%
GGAAGAAGGTGAAGCGGTGG+GGG - Chr6:100940579-100940598 None:intergenic 60.0%
GGACCACCTTGAATTGGGGC+TGG - Chr6:100940900-100940919 None:intergenic 60.0%
GGCTTGGGCTTGGGTTTGAG+GGG - Chr6:100940632-100940651 None:intergenic 60.0%
GGCTTGGGTTTGAGGGGTTG+GGG - Chr6:100940626-100940645 None:intergenic 60.0%
GGGCTTGGGCTTGGGTTTGA+GGG - Chr6:100940633-100940652 None:intergenic 60.0%
GGGCTTGGGTTTGAGGGGTT+GGG - Chr6:100940627-100940646 None:intergenic 60.0%
GTAGCAGCAACCGCAGCAAC+CGG - Chr6:100941253-100941272 None:intergenic 60.0%
GTTGCTGCGGTTGCTGCTAC+TGG + Chr6:100941253-100941272 MsG0680035239.01.T01:CDS 60.0%
GTTGCTGGAAGAGGACGTGG+TGG + Chr6:100941310-100941329 MsG0680035239.01.T01:intron 60.0%
GTTGTTGGGTTCGACGGCGA+AGG - Chr6:100940160-100940179 None:intergenic 60.0%
TAACAGCAGCAACCCGGCTG+TGG + Chr6:100940722-100940741 MsG0680035239.01.T01:intron 60.0%
TGATTCTTCGGTGGACGCCC+TGG - Chr6:100941092-100941111 None:intergenic 60.0%
TGCACTGTCCCTTCCTGCAC+AGG - Chr6:100941149-100941168 None:intergenic 60.0%
TGGGCTTGGGCTTGGGTTTG+AGG - Chr6:100940634-100940653 None:intergenic 60.0%
TGGGCTTGGGTTTGAGGGGT+TGG - Chr6:100940628-100940647 None:intergenic 60.0%
TGTGCAGGAAGGGACAGTGC+AGG + Chr6:100941148-100941167 MsG0680035239.01.T01:CDS 60.0%
TGTTGGGTTCGACGGCGAAG+GGG - Chr6:100940158-100940177 None:intergenic 60.0%
!! GCTGGTGGTGTTGTTTCGGG+TGG + Chr6:100941053-100941072 MsG0680035239.01.T01:CDS 60.0%
!! GGTGTTGCTGGAAGAGGACG+TGG + Chr6:100941307-100941326 MsG0680035239.01.T01:intron 60.0%
ACGGCGAAGGGGAACGGTGT+TGG - Chr6:100940147-100940166 None:intergenic 65.0%
AGAGGACGTGGAAGAGGCCG+CGG + Chr6:100941283-100941302 MsG0680035239.01.T01:CDS 65.0%
AGCCCAAGTGCGGCCCAAAC+AGG - Chr6:100940783-100940802 None:intergenic 65.0%
AGGGACAGTGCAGGCTGGAG+TGG + Chr6:100941157-100941176 MsG0680035239.01.T01:CDS 65.0%
CAGGAAGGGACAGTGCAGGC+TGG + Chr6:100941152-100941171 MsG0680035239.01.T01:CDS 65.0%
CCTGTGTCTGAGCCACAGCC+GGG - Chr6:100940737-100940756 None:intergenic 65.0%
CGGCGAAGGGGAACGGTGTT+GGG - Chr6:100940146-100940165 None:intergenic 65.0%
GAGCCTGTTTGGGCCGCACT+TGG + Chr6:100940777-100940796 MsG0680035239.01.T01:CDS 65.0%
GCCTGTGTCTGAGCCACAGC+CGG - Chr6:100940738-100940757 None:intergenic 65.0%
GCTGGAAGAGGACGTGGTGG+TGG + Chr6:100941313-100941332 MsG0680035239.01.T01:intron 65.0%
GGACGTCCTCTCCCTCGAGA+CGG - Chr6:100940942-100940961 None:intergenic 65.0%
GGCTTTCTGGGCCTACCACG+AGG - Chr6:100940605-100940624 None:intergenic 65.0%
GGTTCGACGGCGAAGGGGAA+CGG - Chr6:100940153-100940172 None:intergenic 65.0%
TCTGGGCCTACCACGAGGTC+TGG - Chr6:100940600-100940619 None:intergenic 65.0%
! AGGGGAACGGTGTTGGGAGG+CGG - Chr6:100940140-100940159 None:intergenic 65.0%
! CGAAGGGGAACGGTGTTGGG+AGG - Chr6:100940143-100940162 None:intergenic 65.0%
!! AGAGGACGTGGTGGTGGTCG+TGG + Chr6:100941319-100941338 MsG0680035239.01.T01:intron 65.0%
!! CGCGGTGGTGTTGCTGGAAG+AGG + Chr6:100941301-100941320 MsG0680035239.01.T01:intron 65.0%
!! CGTGGTGGTGGTCGTGGAAG+AGG + Chr6:100941325-100941344 MsG0680035239.01.T01:intron 65.0%
!! TGCTGCTGTGCCGGTTGCTG+CGG + Chr6:100941240-100941259 MsG0680035239.01.T01:CDS 65.0%
CCCGGCTGTGGCTCAGACAC+AGG + Chr6:100940734-100940753 MsG0680035239.01.T01:CDS 70.0%
CGAGGGAGAGGACGTCCTCC+TGG + Chr6:100940945-100940964 MsG0680035239.01.T01:CDS 70.0%
GAAGGTGAAGCGGTGGGGGG+AGG - Chr6:100940575-100940594 None:intergenic 70.0%
GTGGGGGGAGGTGGAGAAGG+AGG - Chr6:100940563-100940582 None:intergenic 70.0%
! ACGGTGTTGGGAGGCGGAGC+TGG - Chr6:100940134-100940153 None:intergenic 70.0%
!! AGAGGCCGCGGTGGTGTTGC+TGG + Chr6:100941295-100941314 MsG0680035239.01.T01:intron 70.0%
GCGGTGGGGGGAGGTGGAGA+AGG - Chr6:100940566-100940585 None:intergenic 75.0%
GGACGTGGAAGAGGCCGCGG+TGG + Chr6:100941286-100941305 MsG0680035239.01.T01:intron 75.0%
GGTGAAGCGGTGGGGGGAGG+TGG - Chr6:100940572-100940591 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
Chr6 gene 100940028 100945373 100940028 ID=MsG0680035239.01;Name=MsG0680035239.01
Chr6 mRNA 100940028 100945373 100940028 ID=MsG0680035239.01.T01;Parent=MsG0680035239.01;Name=MsG0680035239.01.T01;_AED=0.49;_eAED=0.52;_QI=79|0.33|0.25|1|1|1|4|0|374
Chr6 exon 100940028 100940253 100940028 ID=MsG0680035239.01.T01:exon:10490;Parent=MsG0680035239.01.T01
Chr6 exon 100940350 100940672 100940350 ID=MsG0680035239.01.T01:exon:10491;Parent=MsG0680035239.01.T01
Chr6 exon 100940731 100941304 100940731 ID=MsG0680035239.01.T01:exon:10492;Parent=MsG0680035239.01.T01
Chr6 exon 100945293 100945373 100945293 ID=MsG0680035239.01.T01:exon:10493;Parent=MsG0680035239.01.T01
Chr6 five_prime_UTR 100940028 100940106 100940028 ID=MsG0680035239.01.T01:five_prime_utr;Parent=MsG0680035239.01.T01
Chr6 CDS 100940107 100940253 100940107 ID=MsG0680035239.01.T01:cds;Parent=MsG0680035239.01.T01
Chr6 CDS 100940350 100940672 100940350 ID=MsG0680035239.01.T01:cds;Parent=MsG0680035239.01.T01
Chr6 CDS 100940731 100941304 100940731 ID=MsG0680035239.01.T01:cds;Parent=MsG0680035239.01.T01
Chr6 CDS 100945293 100945373 100945293 ID=MsG0680035239.01.T01:cds;Parent=MsG0680035239.01.T01
Gene Sequence

>MsG0680035239.01.T01

ATGGACCCATCTTCGATCTCTTCACCAGCTCCGCCTCCCAACACCGTTCCCCTTCGCCGTCGAACCCAACAACCACCTCTTCAACCACCACCACAACAACTTCCTCCTCCTTCTTCTTCTTCTTTCAACCACCCACCTTATGCTGAGATGATATACACAGCAATTGAAGCATTGAAGGAGAAAGATGGTTCAAGCAAAAGAGCAATATCAAAATACATAGAACATGTTTACAGAGATCAGCTTCCAAATTCAGAATCTCATCAAAACTTGTTAACTCATCACTTGAAGCGTTTGAAATCTGAAGGTTTACTTCAAATGATCAAAAACTCTTACATACTTCCTAGATCCACCCCATTACCTCCTTCTCCACCTCCCCCCACCGCTTCACCTTCTTCCAGACCTCGTGGTAGGCCCAGAAAGCCCCAACCCCTCAAACCCAAGCCCAAGCCCAAGATAACAACACCAACTTTCAACCCGGCTGTGGCTCAGACACAGGCTCAGCAGAATGCTTCTGCTGAGCCTGTTTGGGCCGCACTTGGGCTTAATGATGAGCCTGTTGCTGTTCAGCCTAGTACTGTTCTTGAAGGAAGTAAAAGAAGACCGGGCCGTCCTAAAAAGGGAACAAACTTGAGTCCTCCAGCCCCAATTCAAGGTGGTCCGGTTTCAGTTTCAACTACACCGTCTCGAGGGAGAGGACGTCCTCCTGGTTCGAAATCTAAATCAAAGAAGAGACCAGGACGTCCACCAAAGATTCAGCCGGAGAGTTTCACTCCGGCTTCTGGTACTGGTACTGCTGGTGGTGTTGTTTCGGGTGGTTCGAAGAGAAGACCAGGGCGTCCACCGAAGAATCAACAGCAGAATCCAACTGTGATACCATTTGCTGCACCTGTGCAGGAAGGGACAGTGCAGGCTGGAGTGGAAGGGGTTTCTCTTGTGACTCCGAGATCTAGAGGAAGGCCAAGAAAGAATGTGATGCTGTTGCTGCTGTGCCGGTTGCTGCGGTTGCTGCTACTGGTAGAGGCAGAGGACGTGGAAGAGGCCGCGAGAACAACACCTGCTACTGCTAGTGCTCCAGAAAATGATGCTAAAGAGACGATCTCAAGAAGAAACTTGAACACTTTGTAA
Protein sequence

>MsG0680035239.01.T01

MDPSSISSPAPPPNTVPLRRRTQQPPLQPPPQQLPPPSSSSFNHPPYAEMIYTAIEALKEKDGSSKRAISKYIEHVYRDQLPNSESHQNLLTHHLKRLKSEGLLQMIKNSYILPRSTPLPPSPPPPTASPSSRPRGRPRKPQPLKPKPKPKITTPTFNPAVAQTQAQQNASAEPVWAALGLNDEPVAVQPSTVLEGSKRRPGRPKKGTNLSPPAPIQGGPVSVSTTPSRGRGRPPGSKSKSKKRPGRPPKIQPESFTPASGTGTAGGVVSGGSKRRPGRPPKNQQQNPTVIPFAAPVQEGTVQAGVEGVSLVTPRSRGRPRKNVMLLLLCRLLRLLLLVEAEDVEEAARTTPATASAPENDAKETISRRNLNTL*